Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399682.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2928.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2325
ACGTcount: A:0.13, C:0.06, G:0.05, T:0.14

Warning! 1433 characters in sequence are not A, C, G, or T


Found at i:2208 original size:22 final size:22

Alignment explanation


    Indices: 2183--2228  Score: 74
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2173 CAATATATTT

                *                 
       2183 TCAATATTGTAACCAACGATCA
          1 TCAACATTGTAACCAACGATCA

                             *    
       2205 TCAACATTGTAACCAACTATCA
          1 TCAACATTGTAACCAACGATCA

              
       2227 TC
          1 TC

       2229 NNNNNNNNNN


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28


Consensus pattern (22 bp):   
TCAACATTGTAACCAACGATCA
Done.