Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399684.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_293.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4722
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.17

Warning! 2567 characters in sequence are not A, C, G, or T


Found at i:3931 original size:171 final size:170

Alignment explanation


    Indices: 3646--3988  Score: 461
    Period size: 171  Copynumber: 2.0  Consensus size: 170

       3636 NNNNNNNNNN

                     * *                          *   *               *      
       3646 AGGCTTTCGTAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGACATATTTTTCTTCAC
          1 AGGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTTATTGACAATGGACATATTTTCCTTCAC

                       *   *                *     *                  *       
       3711 GTTTCTTAAAGTAGATAATCAATTATAATATATTTTAATAAAAAATATAAAAAAATTTAAATTAA
         66 GTTTCTTAAAGCAGACAATCAATTATAATATACTTTAAGAAAAAATAT-AAAAAATTCAAATTAA

                *                 *         *        
       3776 AATCCATTATAAGGTTATAAAATTATTTAATGTGAGTAATA
        130 AATCAATTATAAGGTTATAAAAATATTTAATGCGAGTAATA

                            *       *                         *  *           
       3817 AGGCTTTCGAAAGCATTGGTGACTCTAAATGGACTTTTATTGACAATGGATATCTTTTCCTTCAC
          1 AGGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTTATTGACAATGGACATATTTTCCTTCAC

                *    *       *           * *                    *            
       3882 GTTTTTTAAGGCAGACATTCAATTATAATCTGCTTTAAGAAAAAATATAAAATATTCAAATTAAA
         66 GTTTCTTAAAGCAGACAATCAATTATAATATACTTTAAGAAAAAATATAAAAAATTCAAATTAAA

                     *                              
       3947 ATCAATTATGAGGTTATAAAAATATTTAATGCGAGTAATA
        131 ATCAATTATAAGGTTATAAAAATATTTAATGCGAGTAATA

              
       3987 AG
          1 AG

       3989 NNNNNNNNNN


Statistics
Matches: 148,  Mismatches: 24, Indels: 1
        0.86            0.14        0.01

Matches are distributed among these distances:
 170   53  0.36
 171   95  0.64

ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37


Consensus pattern (170 bp):   
AGGCTTTCGAAAGCATGGGTGACTATAAATGGACTTTTATTGACAATGGACATATTTTCCTTCAC
GTTTCTTAAAGCAGACAATCAATTATAATATACTTTAAGAAAAAATATAAAAAATTCAAATTAAA
ATCAATTATAAGGTTATAAAAATATTTAATGCGAGTAATA
Done.