Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399699.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2944.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.24, C:0.11, G:0.09, T:0.26

Warning! 516 characters in sequence are not A, C, G, or T


Found at i:391 original size:167 final size:170

Alignment explanation


    Indices: 5--580  Score: 466
    Period size: 171  Copynumber: 3.4  Consensus size: 170

          1 CTCA

                                  *     *          **          *  *   *      
          5 AGAAACAT-AAGCAAAAGCCATCCATTGGCAAGAAAAGTTTATTTATAGTCGCTTAAGACTTCAA
          1 AGAAACATGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAA

               *         *   **********     *                 **  *        * 
         69 AAGCCTTATTACTTGCTNNNNNNNNNNTTATAGTCTCATAATTGATTTTACGTTGAATTTTTTTA
         66 AAGACTTATTACTCGCTTTAAATGGCTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTCA

                                 *     *            
        134 TATTTTTAGTTAAAACAGATTGTATTTGAATGTCTACCTT
        131 TATTTTTAGTTAAAACAGATTATATTTCAATGTCTACCTT

                       *                 *                                 * 
        174 AGGAAACATGATGCAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACTCAAGCCTTTA
          1 A-GAAACATGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCA

                *                                 *                          
        239 AAAGTCTTATTACTC-CTTTTAAATGGCTTTATAATCTTATAATTGA-TTTAAATTAAATTTTTT
         65 AAAGACTTATTACTCGC-TTTAAATGGCTTTATAATCTCATAATTGATTTTAAATTAAATTTTTT

                                                 *    
        302 CATATTTTT-GTTAAAACAGATTATATTTCAATGTCTGCCTT
        129 CATATTTTTAGTTAAAACAGATTATATTTCAATGTCTACCTT

              *         *                 *     *                           *
        343 -GTAACATGAAGTAAAAGCCA-TCTATTGATAAGAAGAGTCCATTTATAGTCACTCAAGCCTTCG
          1 AGAAACATGAAGCAAAAGCCATTC-ATTGACAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCA

            *                         *          **********     *            
        406 GAAGACTTATTACTCGCTTTAAATGGTTTTATAATCTNNNNNNNNNNTTTAAGTTAAACTTTTTT
         65 AAAGACTTATTACTCGCTTTAAATGGCTTTATAATCTCATAATTGATTTTAAATTAAA-TTTTTT

              *               * *   *  ** *     *      *
        471 -ACATTTTT-GATTAAAATATATTGTAACTAAATGTTTACCTCG
        129 CATATTTTTAG-TTAAAACAGATTATATTTCAATGTCTACCT-T

                                  *     *                     *   *   *      
        513 AGAAACATGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCCATTTATAGTTACTTAAGACTTCAA
          1 AGAAACATGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAA

               
        578 AAG
         66 AAG

        581 CCTGACTACT


Statistics
Matches: 325,  Mismatches: 71, Indels: 20
        0.78            0.17        0.05

Matches are distributed among these distances:
 166    2  0.01
 167   84  0.26
 168   19  0.06
 169   58  0.18
 170   30  0.09
 171  131  0.40
 172    1  0.00

ACGTcount: A:0.34, C:0.14, G:0.12, T:0.36


Consensus pattern (170 bp):   
AGAAACATGAAGCAAAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAA
AAGACTTATTACTCGCTTTAAATGGCTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTCA
TATTTTTAGTTAAAACAGATTATATTTCAATGTCTACCTT
Done.