Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399729.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2973.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2717
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.29

Warning! 523 characters in sequence are not A, C, G, or T


Found at i:845 original size:171 final size:171

Alignment explanation


    Indices: 663--1089  Score: 462
    Period size: 171  Copynumber: 2.5  Consensus size: 171

        653 NNNNNNTAGC

                *               *               *                     **     
        663 CAAATATGTAAAAAAATTCACCTTAAAATCAATTATGATATTATAAATCAATTTAAAGCAAGTAA
          1 CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATCATATTATAAATCAATTTAAAGTGAGTAA

              *                      *       *            * *      *         
        728 TACGGCTTTTGAAAGAATAGGTGACTATAAATGGACTTTTATTGCCGACGAATGCGTTTTTCTTC
         66 TAAGGCTTTTGAAAGAATAGGTGACGATAAATGAACTTTTATTGCCAAAGAATGCATTTTTCTTC

                               *  *         * *      *
        793 AAGTTTCTCTAAG-TAAACTTTGAATTATAGTTTGTTTTAAG
        131 AAGTTTCTC-AAGTTAAACATTCAATTATAGTCTATTTTAAA

                          *                 **********                       
        834 CAAAAATGTAAAAACATTCAACTTAAAATCAANNNNNNNNNNATAAAAT-AATTTAAAGTGAGTA
          1 CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATCATATTAT-AAATCAATTTAAAGTGAGTA

                  *                                  *    *                  
        898 ATAAGGATTTTGAAAGAATAGGTGACGATAAATGAACTTTTCTTGCTAAAGAATGCATTTTTCTT
         65 ATAAGGCTTTTGAAAGAATAGGTGACGATAAATGAACTTTTATTGCCAAAGAATGCATTTTTCTT

              *              *                        
        963 CATGTTTCTCAAGTTAAGCATTCAATTATAGTCTATTTTAAA
        130 CAAGTTTCTCAAGTTAAACATTCAATTATAGTCTATTTTAAA

                                    *           *            * *      *      
       1005 CAAAAATGTAAAAAAAAATTCAACGTAAAATCAATTTTCATATTATAAAACTATTTAAGGTGAGT
          1 CAAAAATGT--AAAAAAATTCAACTTAAAATCAATTATCATATTATAAATCAATTTAAAGTGAGT

                           *    
       1070 AATAAGGCTTTTGAAGGAAT
         64 AATAAGGCTTTTGAAAGAAT

       1090 NNNNNNNNNN


Statistics
Matches: 203,  Mismatches: 48, Indels: 8
        0.78            0.19        0.03

Matches are distributed among these distances:
 170    3  0.01
 171  140  0.69
 172    7  0.03
 173   53  0.26

ACGTcount: A:0.41, C:0.10, G:0.13, T:0.34


Consensus pattern (171 bp):   
CAAAAATGTAAAAAAATTCAACTTAAAATCAATTATCATATTATAAATCAATTTAAAGTGAGTAA
TAAGGCTTTTGAAAGAATAGGTGACGATAAATGAACTTTTATTGCCAAAGAATGCATTTTTCTTC
AAGTTTCTCAAGTTAAACATTCAATTATAGTCTATTTTAAA
Done.