Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399748.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2992.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1931
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.30

Warning! 479 characters in sequence are not A, C, G, or T


Found at i:520 original size:171 final size:170

Alignment explanation


    Indices: 171--520  Score: 373
    Period size: 171  Copynumber: 2.1  Consensus size: 170

        161 NNNNNNNNNN

                     *                                                       
        171 ATTTTAAGTTAAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACGTTTGCCTTGACA
          1 ATTTTAAGTGAAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACGTTTGCCTTGACA

            * *                                          *     *      *  * **
        236 TACGTGAAGAAAAAACATTCATTGACAAGAAAAGTCTATTCTTAGGCTCTCGTTCCTTTAATAGC
         66 AAAGTGAAGAAAAAACATTCATTGACAAGAAAAGTCTATTCTTAGCCTCTCATTCCTTCAAAAAA

               *   *                        ********
        301 CTTTTTACTCGTTCTAAATAGTTTTATAATCTNNNNNNNN
        131 CTTATTAATCGTTCTAAATAGTTTTATAATCTAATAATTG

            **        *                 *       *            * *    *      * 
        341 NNTTTAAGTGCAAATTTTTTACATTTTTTATTAAAATAGACTATAATTGGATGTTTTCCTTGAGA
          1 ATTTTAAGTGAAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACGTTTGCCTTGACA

                                                                 *           
        406 AAAGTGAAGAAAAAAACATTCATT-AGCAAGAAAAGTCTATT-TATAGCCTCTTATTCCTTCAAA
         66 AAAGTGAAG-AAAAAACATTCATTGA-CAAGAAAAGTCTATTCT-TAGCCTCTCATTCCTTCAAA

                        *                               
        469 AAACTTATTAATTGCTT-TAAATAGTTTTATAATCTAATAATTG
        128 AAACTTATTAATCG-TTCTAAATAGTTTTATAATCTAATAATTG

                     
        512 ATTTTAAGT
          1 ATTTTAAGT

        521 TGAATNNNNN


Statistics
Matches: 144,  Mismatches: 32, Indels: 7
        0.79            0.17        0.04

Matches are distributed among these distances:
 170   64  0.44
 171   78  0.54
 172    2  0.01

ACGTcount: A:0.35, C:0.12, G:0.11, T:0.39


Consensus pattern (170 bp):   
ATTTTAAGTGAAAATTTTTTACATTTTTCATTAAAACAGACTATAATTGAACGTTTGCCTTGACA
AAAGTGAAGAAAAAACATTCATTGACAAGAAAAGTCTATTCTTAGCCTCTCATTCCTTCAAAAAA
CTTATTAATCGTTCTAAATAGTTTTATAATCTAATAATTG
Done.