Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397278.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_7.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2181410
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.18
Warning! 1087948 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:15166 original size:18 final size:18
Alignment explanation
Indices: 15143--15183 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
15133 TGTATTTGCT
15143 TCTCAATGGATGGCTTTG
1 TCTCAATGGATGGCTTTG
15161 TCTCAATGGATGGCTTTG
1 TCTCAATGGATGGCTTTG
*
15179 CCTCA
1 TCTCA
15184 CATTTCCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (18 bp):
TCTCAATGGATGGCTTTG
Found at i:18633 original size:18 final size:18
Alignment explanation
Indices: 18607--18647 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
18597 TTAGGAAATG
* *
18607 TGAGGCAAAGCCATCCAT
1 TGAGACAAAACCATCCAT
18625 TGAGACAAAACCATCCAT
1 TGAGACAAAACCATCCAT
18643 TGAGA
1 TGAGA
18648 AGCAAANNNN
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (18 bp):
TGAGACAAAACCATCCAT
Found at i:39044 original size:12 final size:12
Alignment explanation
Indices: 39027--39054 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
39017 CAAATCACTA
39027 AAAGCGAGTAAT
1 AAAGCGAGTAAT
39039 AAAGCGAGTAAT
1 AAAGCGAGTAAT
39051 AAAG
1 AAAG
39055 ATATCAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.25, T:0.14
Consensus pattern (12 bp):
AAAGCGAGTAAT
Found at i:46516 original size:170 final size:161
Alignment explanation
Indices: 46226--46550 Score: 334
Period size: 170 Copynumber: 2.0 Consensus size: 161
46216 TCATTTTTGA
* * *
46226 TTAAAAAGGATCATAATTTGTTATGTGCATTGGGAAACATGAAGCGAAAGCCATCCATTAACAAG
1 TTAAAAAGGATCATAATTTATTATGTGCATTGCGAAACATGAAGCGAAAACCATCCATTAACAAG
* * * *
46291 AAAAGTCTATCCATAGTTACTTATGTCTTTGAAAGCCTTGTTACTTGATTTAAATGGTTTCATAA
66 AAAAGTCTATCCATAGTTACTCATGTCTTCGAAAGCCTTATTACTCGATTTAAATGGTTTCATAA
* *
46356 TCTTAT-AAGGATTTTAAATTGAATCATTCNNNNNNNNNNG
131 TCATATAAAGGATGTTAAATTGAATCATTC----------G
* * * * *
46396 TTAAAATA-GATCATAATTTATTATTTGTATTGCGAAACGTGAAG-TAAACACCATCCATTGACA
1 TTAAAA-AGGATCATAATTTATTATGTGCATTGCGAAACATGAAGCGAAA-ACCATCCATTAACA
** * *
46459 AGAAAAGTCTATTTATAGTTACTCATG-CATTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTA
64 AGAAAAGTCTATCCATAGTTACTCATGTC-TTCGAAAGCCTTATTACTCGATTTAAATGGTTTCA
*
46523 TAATCATATAAATGATGTTAAATTGAAT
128 TAATCATATAAAGGATGTTAAATTGAAT
46551 TTTTTTTTCA
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
169 4 0.03
170 111 0.84
171 17 0.13
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.35
Consensus pattern (161 bp):
TTAAAAAGGATCATAATTTATTATGTGCATTGCGAAACATGAAGCGAAAACCATCCATTAACAAG
AAAAGTCTATCCATAGTTACTCATGTCTTCGAAAGCCTTATTACTCGATTTAAATGGTTTCATAA
TCATATAAAGGATGTTAAATTGAATCATTCG
Found at i:50106 original size:170 final size:171
Alignment explanation
Indices: 49902--50269 Score: 399
Period size: 170 Copynumber: 2.2 Consensus size: 171
49892 AATAATTAGG
* * * * *
49902 CTTTCAAAGGCATGAGTGA-TAATAAATGGACTTTTCTTGTAAATGGGTACCATTCCCTTCACGT
1 CTTTCGAAGGCATGAGTGACT-ATAAATAGACTTTTCTTGTAAATGGATAACATTCACTTCACGT
* *
49966 TTCCTTA-TGTAAACA-ACAACTTATGATCTACTTTAATCAA-AAATGAAAAA-AA-ATCAATTT
65 TTCCTAACAG-AAACATACAA-TTATGATCTACTTTAAT-AAGAAAT-AAAAATAAGATCAATTT
* * *
50026 AACACCATTTATAAGATTATAAAATCAATTAAAG-TGAGGAACAAGA
126 AAAAACATTTATAAGATTATAAAACCAATTAAAGCT-AGGAACAAGA
* * * *
50072 CTTTCGAAGGCATCAGTGACTATAAATAGACTTTTCTTGTCAATGGATAACTTTCACTTTACGTT
1 CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTAAATGGATAACATTCACTTCACGTT
* * * * *
50137 TCCTAACAGAGACATCCAATTATGATCTATTTTAATAAGAAATAAAAATAAGTTCGATTTAAAAA
66 TCCTAACAGAAACATACAATTATGATCTACTTTAATAAGAAATAAAAATAAGATCAATTTAAAAA
* * * * * *
50202 TATTTATAAGATTATACAACCATTTAAAGCTAGTAATAAGG
131 CATTTATAAGATTATAAAACCAATTAAAGCTAGGAACAAGA
*
50243 CTTTCGAAGGCATGAGTGGCTATAAAT
1 CTTTCGAAGGCATGAGTGACTATAAAT
50270 GNNNNNNNNN
Statistics
Matches: 164, Mismatches: 27, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
169 7 0.04
170 85 0.52
171 71 0.43
172 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (171 bp):
CTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTAAATGGATAACATTCACTTCACGTT
TCCTAACAGAAACATACAATTATGATCTACTTTAATAAGAAATAAAAATAAGATCAATTTAAAAA
CATTTATAAGATTATAAAACCAATTAAAGCTAGGAACAAGA
Found at i:50268 original size:171 final size:170
Alignment explanation
Indices: 49816--50463 Score: 405
Period size: 171 Copynumber: 3.8 Consensus size: 170
49806 NNCAAGAAAA
** * * * * * * * *
49816 TATGATCTGTTTTAACCAAAAATGAAAAAAATTGAATTCAAAATCACTTACAAAAATTATAAAA-
1 TATGATCTACTTTAATCAAAAATGAAAAAAAATCAATTTAAAAACATTTA-TAAGATTATAAAAC
* ** * * * * *
49880 TAATTTAAAACGAATAATTAGGCTTTCAAAGGCATGAGT-GATAATAAATGGACTTTTCTTGTAA
65 CAA-TTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGGCT-ATAAATAGACTTTTCTTGTAA
* * * * *
49944 ATGGGTACCATTCCCTTCACGTTTCCTTATGTAAACAACAACT
128 ATGGATAACATTCACTTCACGTTTCCTAAAGTAAACAACAACT
* * *
49987 TATGATCTACTTTAATCAAAAATGAAAAAAAATCAATTTAACACCATTTATAAGATTATAAAATC
1 TATGATCTACTTTAATCAAAAATGAAAAAAAATCAATTTAAAAACATTTATAAGATTATAAAACC
* * * * * *
50052 AATTAAAGTGAGGAACAAGACTTTCGAAGGCATCAGTGACTATAAATAGACTTTTCTTGTCAATG
66 AATTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTGTAAATG
* * * *
50117 GATAACTTTCACTTTACGTTTCCTAACAG-AGACATCCAA-T
131 GATAACATTCACTTCACGTTTCCTAA-AGTAAACA-ACAACT
* * * * *
50157 TATGATCTATTTTAAT-AAGAAAT-AAAAATAAGTTCGATTTAAAAATATTTATAAGATTATACA
1 TATGATCTACTTTAATCAA-AAATGAAAAA-AA-ATCAATTTAAAAACATTTATAAGATTATAAA
* *********
50220 ACCATTTAAAGCT-AGTAATAAGGCTTTCGAAGGCATGAGTGGCTATAAAT-GNNNNNNNNNNGT
63 ACCAATTAAAG-TGAGTAATAAGGCTTTCGAAGGCATGAGTGGCTATAAATAG-ACTTTTCTTGT
* ** ** * * * * *
50283 TAATGGATAGTATTTGCTTCATGTTTCCCAATGTAAACAATAAAT
126 AAATGGATAACATTCACTTCACGTTTCCTAAAGTAAACAACAACT
** * * * * *
50328 TATGAAT-TTTTTTAACCAAAAATGAAAAAAGAAATTCAATTTCATATCATTTATATGATTATAA
1 TATG-ATCTACTTTAATCAAAAATG-AAAAA-AAA-TCAATTTAAAAACATTTATAAGATTATAA
* * ** * ** * * *
50392 AACTATTTAAAGCAAATAATAAGGCTTTCGAAGGCATGAGTAACTATTAATGGACTTTTCTTGTT
62 AACCAATTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTGTA
50457 AATGGAT
127 AATGGAT
50464 GGCTTTCGCT
Statistics
Matches: 363, Mismatches: 96, Indels: 34
0.74 0.19 0.07
Matches are distributed among these distances:
169 7 0.02
170 109 0.30
171 158 0.44
172 5 0.01
173 83 0.23
174 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.33
Consensus pattern (170 bp):
TATGATCTACTTTAATCAAAAATGAAAAAAAATCAATTTAAAAACATTTATAAGATTATAAAACC
AATTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGGCTATAAATAGACTTTTCTTGTAAATG
GATAACATTCACTTCACGTTTCCTAAAGTAAACAACAACT
Found at i:63836 original size:169 final size:160
Alignment explanation
Indices: 63650--63967 Score: 329
Period size: 169 Copynumber: 1.9 Consensus size: 160
63640 NNGTTTCCCT
* *
63650 ATGCAAACATCAAATTATGATCTATTTTAAGCATAAG-AGAAAAAAATTCAATCTAAAATCATTT
1 ATGCAAACATCAAATTATGATCTATTTTAACCAAAAGTAG-AAAAAATTCAATCTAAAATCATTT
** * *
63714 ATAAAGTTGTAAAACCACAT-AAATCTAGTAACAAGACTTTTGAAGGCATGAATGAC-ATAAATA
65 ATAAAGTCATAAAACCACATGAAAT-GAGTAACAAGACTTTCGAAGGCATGAATGACTATAAA-A
*
63777 -GACTTTTCTTGTCAATGGATGACATTCGNNNNNNNNNNCCTA
128 GGACTTTTCTTATCAATGGATGACATTCG----------CCTA
* * * * *
63819 ATGCAAACATTAAATTATTATCTATTTTAACCAAAAGTAGATAAAATTCTATTTAAAATCATTTA
1 ATGCAAACATCAAATTATGATCTATTTTAACCAAAAGTAGAAAAAATTCAATCTAAAATCATTTA
* * * **
63884 TAAAGTCATAAAACCACATGAAATGAGTAACAATACTTTCGAATGCGTGCGTGACTATAAAAGGA
66 TAAAGTCATAAAACCACATGAAATGAGTAACAAGACTTTCGAAGGCATGAATGACTATAAAAGGA
*
63949 CTTTTGTTATCAATGGATG
131 CTTTTCTTATCAATGGATG
63968 GCTTTTGCTT
Statistics
Matches: 127, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
169 97 0.76
170 30 0.24
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.31
Consensus pattern (160 bp):
ATGCAAACATCAAATTATGATCTATTTTAACCAAAAGTAGAAAAAATTCAATCTAAAATCATTTA
TAAAGTCATAAAACCACATGAAATGAGTAACAAGACTTTCGAAGGCATGAATGACTATAAAAGGA
CTTTTCTTATCAATGGATGACATTCGCCTA
Found at i:90170 original size:19 final size:18
Alignment explanation
Indices: 90129--90181 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
90119 GCCTTATTAC
90129 TAAAT-TTAAAATG-TTT
1 TAAATCTTAAAATGATTT
90145 TATAATCTTATAAATGATTT
1 TA-AATCTTA-AAATGATTT
90165 TAAATC--AAAATGATTT
1 TAAATCTTAAAATGATTT
90181 T
1 T
90182 CATGGTTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 12 0.36
17 4 0.12
18 3 0.09
19 9 0.27
20 5 0.15
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (18 bp):
TAAATCTTAAAATGATTT
Found at i:94538 original size:16 final size:17
Alignment explanation
Indices: 94517--94549 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
94507 AAAACGTGAA
*
94517 GACAAAACAA-TCCATT
1 GACAAAAAAAGTCCATT
94533 GACAAAAAAAGTCCATT
1 GACAAAAAAAGTCCATT
94550 TATANNNNNN
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.21, G:0.09, T:0.18
Consensus pattern (17 bp):
GACAAAAAAAGTCCATT
Found at i:163173 original size:14 final size:14
Alignment explanation
Indices: 163154--163185 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
163144 TATGAAAAGT
*
163154 TCATTTATAGTCAC
1 TCATTTATAGTCAA
163168 TCATTTATAGTCAA
1 TCATTTATAGTCAA
163182 TCAT
1 TCAT
163186 GTCTTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (14 bp):
TCATTTATAGTCAA
Found at i:191675 original size:16 final size:16
Alignment explanation
Indices: 191641--191685 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
191631 GATGTGTATG
* **
191641 TGTATATCTACATGTA
1 TGTATATATACATACA
191657 TGTATATATACATACA
1 TGTATATATACATACA
*
191673 TGTAGATATACAT
1 TGTATATATACAT
191686 GTTTGCTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (16 bp):
TGTATATATACATACA
Found at i:247385 original size:20 final size:20
Alignment explanation
Indices: 247357--247407 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
247347 CTCTCTAATC
* *
247357 TATTGATACATTTGGCAGTG
1 TATTAATACATTTGGCAATG
247377 TATTAATACATTTGGCAATG
1 TATTAATACATTTGGCAATG
*
247397 TATCAATACAT
1 TATTAATACAT
247408 CTACCCTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (20 bp):
TATTAATACATTTGGCAATG
Found at i:261264 original size:20 final size:20
Alignment explanation
Indices: 261239--261289 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
261229 ATTAGGGTAG
*
261239 ATGTATTGATACATTGCCAA
1 ATGTATTGATACATGGCCAA
*
261259 ATGTATTAATACATGGCCAA
1 ATGTATTGATACATGGCCAA
*
261279 ATGTATCGATA
1 ATGTATTGATA
261290 GATCAGAGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATTGATACATGGCCAA
Found at i:303665 original size:25 final size:25
Alignment explanation
Indices: 303608--303667 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
303598 NNNNNNGCAA
*
303608 CCATGTATATCAACTTGTGGCCTAG
1 CCATGTATATCAACCTGTGGCCTAG
* * *
303633 CCACGTATATCATCCTGTGGCTTCAG
1 CCATGTATATCAACCTGTGGCCT-AG
303659 -CATGTATAT
1 CCATGTATAT
303668 ATATCATAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.33
Consensus pattern (25 bp):
CCATGTATATCAACCTGTGGCCTAG
Found at i:305255 original size:13 final size:13
Alignment explanation
Indices: 305237--305261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
305227 CCACCTTATT
305237 TCTTTTTCTCATC
1 TCTTTTTCTCATC
305250 TCTTTTTCTCAT
1 TCTTTTTCTCAT
305262 TTTCTCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (13 bp):
TCTTTTTCTCATC
Found at i:320555 original size:26 final size:26
Alignment explanation
Indices: 320525--320574 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
320515 TTGAGAACCT
320525 AACTTGCTTTGAAACGATTTTGTCCC
1 AACTTGCTTTGAAACGATTTTGTCCC
320551 AACTTGCTTTGAAACGATTTTGTC
1 AACTTGCTTTGAAACGATTTTGTC
320575 TGACCGGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (26 bp):
AACTTGCTTTGAAACGATTTTGTCCC
Found at i:344131 original size:14 final size:14
Alignment explanation
Indices: 344097--344123 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
344087 CTTTCTCCTT
344097 TCTTTTTTCTTCCA
1 TCTTTTTTCTTCCA
344111 TCTTTTTTCTTCC
1 TCTTTTTTCTTCC
344124 CTTTTTTTGN
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTTTTTCTTCCA
Found at i:444327 original size:62 final size:62
Alignment explanation
Indices: 444230--444419 Score: 206
Period size: 62 Copynumber: 3.1 Consensus size: 62
444220 NNNNNNNNNN
* * *
444230 GTTAAATTGGGCTTGAATTCCTTTTGT-CCTAACGTAACTAGACTTATACTTCTTAGATGCCA
1 GTTAAATTGGGCTT-AAATCTTTTTGTGCCTAACGTAACTAGACTTATACATCTTAGATGCCA
* * *
444292 GTTAAAGTGGGCTTAAACTCTTTTTGTGCC-AACGTAACTGGACTTATACATCTTGGATGCCA
1 GTTAAATTGGGCTTAAA-TCTTTTTGTGCCTAACGTAACTAGACTTATACATCTTAGATGCCA
* * * ** * * * *
444354 GATAAATTGGGCTTAAATCTCTTTGTG-CTAACATAGGTAGGCTTAAACATCTTGGATGCTA
1 GTTAAATTGGGCTTAAATCTTTTTGTGCCTAACGTAACTAGACTTATACATCTTAGATGCCA
444415 GTTAA
1 GTTAA
444420 NNNNNNNNNN
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
60 1 0.01
61 40 0.37
62 65 0.60
63 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (62 bp):
GTTAAATTGGGCTTAAATCTTTTTGTGCCTAACGTAACTAGACTTATACATCTTAGATGCCA
Found at i:470795 original size:55 final size:55
Alignment explanation
Indices: 470704--470809 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
470694 NNNNNNNATG
** *
470704 AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAA-TAATTTAAAGTTACA
1 AAAAAGATTTCAATTTAAAATCATTTACAAGATTATAAAACT-ATTTAAAGTTACA
* * *
470759 AAAAAGATTTCAATTTGAAATGATTTACAAGGTTATAAAACTATTTAAAGT
1 AAAAAGATTTCAATTTAAAATCATTTACAAGATTATAAAACTATTTAAAGT
470810 AAATAATTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 43 0.98
56 1 0.02
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (55 bp):
AAAAAGATTTCAATTTAAAATCATTTACAAGATTATAAAACTATTTAAAGTTACA
Found at i:476213 original size:23 final size:23
Alignment explanation
Indices: 476183--476251 Score: 129
Period size: 23 Copynumber: 3.0 Consensus size: 23
476173 GACTGGTTAG
476183 GCTTTCGATGGCATGAGTGACTA
1 GCTTTCGATGGCATGAGTGACTA
476206 GCTTTCGATGGCATGAGTGACTA
1 GCTTTCGATGGCATGAGTGACTA
*
476229 GCTTTCGATGGCATGGGTGACTA
1 GCTTTCGATGGCATGAGTGACTA
476252 TAAATAGACT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.30
Consensus pattern (23 bp):
GCTTTCGATGGCATGAGTGACTA
Found at i:483771 original size:19 final size:19
Alignment explanation
Indices: 483733--483771 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
483723 TTGTTTGTCA
*
483733 CTTAAAATTATTTTATAAT
1 CTTAAAATGATTTTATAAT
483752 CTTATAAATGATTTTA-AAT
1 CTTA-AAATGATTTTATAAT
483771 C
1 C
483772 AAAATCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.49
Consensus pattern (19 bp):
CTTAAAATGATTTTATAAT
Found at i:561778 original size:19 final size:19
Alignment explanation
Indices: 561754--561800 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
561744 TGGTCCACTG
* *
561754 AGAAATGAGGAATAAATAA
1 AGAAATGAAGAAAAAATAA
*
561773 AGAAATGAAGAAAAAATGA
1 AGAAATGAAGAAAAAATAA
561792 A-AAATGAAG
1 AGAAATGAAG
561801 GTGACGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (19 bp):
AGAAATGAAGAAAAAATAA
Found at i:578912 original size:17 final size:16
Alignment explanation
Indices: 578881--578932 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
578871 ACTAATAAAT
*
578881 AAAATATTATATTTTA
1 AAAATATTTTATTTTA
*
578897 ATAATATTTTTATTTTA
1 AAAATA-TTTTATTTTA
*
578914 AAAATATTTTATTTCA
1 AAAATATTTTATTTTA
578930 AAA
1 AAA
578933 TATNNNNNNN
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAATATTTTATTTTA
Found at i:588139 original size:19 final size:21
Alignment explanation
Indices: 588101--588141 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
588091 NNNNNNNNCT
*
588101 TCCTTTCTATTCTCTTCTTTC
1 TCCTTTCTATCCTCTTCTTTC
588122 TCCTTTCT-TCCT-TTCTTTC
1 TCCTTTCTATCCTCTTCTTTC
588141 T
1 T
588142 TTGCTTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 3 0.16
21 8 0.42
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.63
Consensus pattern (21 bp):
TCCTTTCTATCCTCTTCTTTC
Found at i:588443 original size:19 final size:21
Alignment explanation
Indices: 588419--588459 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
588409 TAGGAAGCAA
*
588419 AGAAAG-AGAGGA-AGAAAGG
1 AGAAAGAAGAGAATAGAAAGG
588438 AGAAAGAAGAGAATAGAAAGG
1 AGAAAGAAGAGAATAGAAAGG
588459 A
1 A
588460 NNNNNNNNNN
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 5 0.26
21 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (21 bp):
AGAAAGAAGAGAATAGAAAGG
Found at i:595066 original size:24 final size:25
Alignment explanation
Indices: 595034--595082 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
595024 TTCGCAACCG
595034 CATATATC-ACTAGTGGCCTAGCCA
1 CATATATCAACTAGTGGCCTAGCCA
* *
595058 CATATATCAACTTGTGGCCTTGCCA
1 CATATATCAACTAGTGGCCTAGCCA
595083 TGTATATCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (25 bp):
CATATATCAACTAGTGGCCTAGCCA
Found at i:608108 original size:19 final size:19
Alignment explanation
Indices: 608059--608105 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
608049 TTAAAATTTT
*
608059 AATAATATTTTATTTATAA
1 AATATTATTTTATTTATAA
608078 AATATTATTTTATTT-TAA
1 AATATTATTTTATTTATAA
608096 AATATT-TTTT
1 AATATTATTTT
608106 TTACTTATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 9 0.33
19 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATATTATTTTATTTATAA
Found at i:632607 original size:19 final size:18
Alignment explanation
Indices: 632575--632612 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
632565 NNNNGATTTT
*
632575 GATTTAAAATCATTTAAA
1 GATTTAAAACCATTTAAA
632593 GATTATAAAACCATTTAAA
1 GATT-TAAAACCATTTAAA
632612 G
1 G
632613 TAAGTAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (18 bp):
GATTTAAAACCATTTAAA
Found at i:636180 original size:167 final size:167
Alignment explanation
Indices: 635840--636241 Score: 402
Period size: 167 Copynumber: 2.4 Consensus size: 167
635830 CATTGATAAG
* * * * * **
635840 AAAAGTCCATTTATAGTCACTCATACCTGCGAAAGCCTAGTTACTCGCTTTAATCATTTTATAAT
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAATGGTTTTATAAT
* * *
635905 CTTATAAATGATTTTAAATCAAATCTTTTTTTTGTTGGTTCAAACATATCATAATTGGATAATTG
66 CTGATAAATGATTTTAAATCAAATCTTTTTTTTGTTGGTTAAAACAGATCATAATTGGATAATTG
** * * ** *
635970 CATTGGAAACATGAAGCGAATGATATTGATTGACAAG
131 CATAAGAAACATGAAGAGAATGACATTGATCAACAAA
* * *
636007 AAAAGTCCATTTATAGTCACTTATGCCTTCAAAAACCTTGTCACTCACTTTAACTGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAA-TGGTTTTATAA
* * * * *
636072 TCTGATAAATGATTTTCAGTCAAAATC-TTTTTTT-TT-GTTAAAATAGATCATATTTGGATATT
65 TCTGATAAATGATTTTAAATC-AAATCTTTTTTTTGTTGGTTAAAACAGATCATAATTGGATAAT
* * *
636134 TGCATCAAGAAACGTGAAGTAG-ATGCCATCT-ATCAAGAAA
129 TGCAT-AAGAAACATGAAG-AGAATGACAT-TGATCAACAAA
* * * * *
636174 AAAAGTCTATTTATAGTCACTCATG-TTATTGAAACCCTTGTTACTTACTTTAAATGGTTTTATA
1 AAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAACCTTGTTACTCACTTT-AATGGTTTTATA
636238 ATCT
64 ATCT
636242 TNNNNNNNNN
Statistics
Matches: 192, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
166 27 0.14
167 122 0.64
168 38 0.20
169 5 0.03
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (167 bp):
AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAATGGTTTTATAAT
CTGATAAATGATTTTAAATCAAATCTTTTTTTTGTTGGTTAAAACAGATCATAATTGGATAATTG
CATAAGAAACATGAAGAGAATGACATTGATCAACAAA
Found at i:658497 original size:170 final size:168
Alignment explanation
Indices: 657791--659097 Score: 866
Period size: 170 Copynumber: 7.7 Consensus size: 168
657781 AAGCTATGCG
* * * ** * *
657791 TTGATAAGAAAAGTCCATTTATAGTCACTTA-AGCCTTTGAAAGCCTTGCTACTC-ATGTTACAT
1 TTGACAAGAAAACTCCATTTATAGTCACTCATA-CCTTTGAAAGCCTTATTACTCGCT-TTAAAT
* * * * *
657854 -GATTTTATAGTCTTATAAATGATTTTAAGTT-AATTTATTTTCATTTTTGGTTGAAAA-AAATC
64 AG-TTTTATACT-TTATAAATGATTTTAAATTGAATTT-TTTTCACTTTTAGTT-AAAACAGATC
* * * * *
657916 ATAATTT-ATTGTTTGCATCAGGAAAAGTGAAGC-AACGACCATACA
125 ATAATTTGA-TGTTTACATTA-GAAACGTGAAGCGAAAG-CCATCCA
* * * * ** * * *
657961 CTGACAAGAAAAGTCCATTTATAATCACT-ATAGCCTTTGAAAGCGTGGTTTCTCACTTTAAATG
1 TTGACAAGAAAACTCCATTTATAGTCACTCATA-CCTTTGAAAGCCTTATTACTCGCTTTAAATA
* * **
658025 GTTTTATGA-TCTTGTAAATGATTTTGAATTGAATGTTTTTTCA-TTTTTTTTAAAA-AGATCAT
65 GTTTTAT-ACT-TTATAAATGATTTTAAATTGAAT-TTTTTTCACTTTTAGTTAAAACAGATCAT
* * * * * *
658087 AATTT-ATTGTTTACATCAAGAAACATTAGGTGAAATCCATCCA
127 AATTTGA-TGTTTACAT-TAGAAACGTGAAGCGAAAGCCATCCA
* * * * * * *
658130 TTGATAAGAATAGTCCATTTATAGTCACACATGCCTTCGAAAGTCC-AATTACAT-GCTTTAAAT
1 TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAG-CCTTATTAC-TCGCTTTAAAT
* * * * *
658193 GGTTTTATACTGCTATAAATGATTTCAAAATTGAATATTTCTT-A-TGTTTCA-TT-ACACTAGA
64 AGTTTTATACT-TTATAAATGATTT-TAAATTGAAT-TTTTTTCACT-TTT-AGTTAAAAC-AGA
* * ** **
658254 TCATAATTTGATGTTTTACGTCAAGAAACAAGAAGTAAAAGCCATCCA
123 TCATAATTTGATG-TTTACAT-TAGAAACGTGAAGCGAAAGCCATCCA
* ** * ** * * **
658302 TTGACAAGAAAAGTTTATATATAGTCACTCATATTTTTGAAAGCCTTGTTACTCGTTTTATGTAG
1 TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAATAG
* * * *
658367 TTTTATAGCTTTATAAATTATTTTAAATTGGATTTTTTTTACTTTTAGTTAAAATAGATCATAAT
66 TTTTATA-CTTTATAAATGATTTTAAATTGAATTTTTTTCACTTTTAGTTAAAACAGATCATAAT
* * *
658432 TTGATGTTTGCATTGAGAAACGTGAAGCAAAATCCATCCA
130 TTGATGTTTACATT-AGAAACGTGAAGCGAAAGCCATCCA
* * * * * *
658472 TTGATAAGAAAACTACATTTATAGTCACTCATGCCTTTGAAGGCCTTATTACTCGATTTAAGT-G
1 TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAATAG
* * * *
658536 ATTTTATAACTTTATAAATAATTTTAAATT-AATTTTTTTCATTTTCTA-TTAGAACAAATCATA
66 -TTTTAT-ACTTTATAAATGATTTTAAATTGAATTTTTTTCACTTT-TAGTTAAAACAGATCATA
* * * *
658599 ATTTAATGTCTACACTAGGAAATGTGAAGCGAAAGCCATCCA
128 ATTTGATGTTTACATTA-GAAACGTGAAGCGAAAGCCATCCA
** ** * * *
658641 TTGACAAGAAAGGTCCATTTATAGTCACTCATACCTTTGAAAGTGTAATTATTGGCTTTAAATAG
1 TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAATAG
* * * * * * *
658706 TTTTGTAATCTTATAAATGATTTTAAAAGTGAATTTTTCTCATTTTTAATTAAAACAAATCATAA
66 TTTTATACT-TTATAAATGATTTT-AAATTGAATTTTTTTCACTTTTAGTTAAAACAGATCATAA
* * *
658771 TTTGATGTTTGCATCTAAAAAC-TAGAATCG-AAGTCCATCCA
129 TTTGATGTTTACAT-TAGAAACGT-GAAGCGAAAG-CCATCCA
* *** * * * *
658812 TTGACAA-AAAAATTTTTTTATAGTCACTCATACCTTCGAAAGCCTAATTACTCACTTTAAATAA
1 TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAATAG
* * * *
658876 TTTTATATTCTTATAAATTATTTTAAAATTGAATTTTTCTCACTTTTAGTCAAAACAGATCATAA
66 TTTTATACT-TTATAAATGATTTT-AAATTGAATTTTTTTCACTTTTAGTTAAAACAGATCATAA
* * * * *
658941 TTTGATGTTTACATTATCAAATGTGAAACGGAAGCCATACA
129 TTTGATGTTTACATTA-GAAACGTGAAGCGAAAGCCATCCA
* * * * *** * * *
658982 TTAATAA-AAATAGC-CCATTTATAATCATTCACGTCTTCGAAAGCCTTATTACTAGCTTTATAT
1 TTGACAAGAAA-A-CTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAAT
* * *
659045 AGTTTTATAACTTTATAAATGATTTTCAATTGAATTTTTTTCATTTTTGGTTA
64 AGTTTTAT-ACTTTATAAATGATTTTAAATTGAATTTTTTTCACTTTTAGTTA
659098 GGGTCCGTTT
Statistics
Matches: 910, Mismatches: 182, Indels: 90
0.77 0.15 0.08
Matches are distributed among these distances:
168 4 0.00
169 235 0.26
170 386 0.42
171 183 0.20
172 100 0.11
173 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (168 bp):
TTGACAAGAAAACTCCATTTATAGTCACTCATACCTTTGAAAGCCTTATTACTCGCTTTAAATAG
TTTTATACTTTATAAATGATTTTAAATTGAATTTTTTTCACTTTTAGTTAAAACAGATCATAATT
TGATGTTTACATTAGAAACGTGAAGCGAAAGCCATCCA
Found at i:658834 original size:339 final size:341
Alignment explanation
Indices: 657791--659092 Score: 810
Period size: 341 Copynumber: 3.8 Consensus size: 341
657781 AAGCTATGCG
* * * * * *** *
657791 TTGATAAGAAAAGTCCATTTATAGTCACTTA-AGCCTTTGAAAGCCTTGCTACTCA-TGTTACAT
1 TTGACAAGAAAAATACATTTATAGTCACTCATA-CCTTCGAAAGCCTAATTACTCACT-TTAAAT
* * * * * * * *
657854 GATTTTATAGTCTTATAAATGATTTT-AAGTT-AATTTATTTTCATTTTTGGTTGAAAA-AAATC
64 AATTTTATACTCTTATAAATAATTTTAAAATTGAATTT-TTCTCACTTTTAG-TCAAAACAAATC
* * * * * * * * *
657916 ATAATTTATTGTTTGCA-TCAGGAAAAGTGAAGC-AACGACCATACACTGACAAGAAAAGTCCAT
127 ATAATTTAATGTCTACACT-AGCAAATGTGAAACGAAAG-CCATCCATTGACAAGAAAAGTCCAT
* * * ** * * * * *
657979 TTATAATCACT-ATAGCCTTTGAAAGCGTGGTTTCTCACTTTAAATGGTTTTAT-GATCTTGTAA
190 ATATAGTCACTCATA-CCTTTGAAAGCCTAATTACTCGCTTTAAATAGTTTTATAGCT-TTATAA
* * * ** * *
658042 ATGATTTTGAATTGAATGTTTTTTCA-TTTTTTTTAAAA-AGATCATAATTT-ATTGTTTACA-T
253 ATGATTTTAAAGTGAAT-TTTTCTCACTTTTAATTAAAACAAATCATAATTTGA-TGTTTGCATT
* * * * **
658103 CAAGAAACATTAGGTGAAATCCATCCA
316 GAA-AAACGTGAAGCAAAATCCATCCA
* * * * * * *
658130 TTGATAAGAATAGTCCATTTATAGTCACACATGCCTTCGAAAGTCC-AATTACAT-GCTTTAAAT
1 TTGACAAGAAAAATACATTTATAGTCACTCATACCTTCGAAAG-CCTAATTAC-TCACTTTAAAT
** * * * * * * *
658193 GGTTTTATACTGC-TATAAATGATTTCAAAATTGAATATTTCTTA-TGTTTCA-T-TACACTAGA
64 AATTTTATACT-CTTATAAATAATTTTAAAATTGAATTTTTCTCACT-TTT-AGTCAAAAC-AAA
* * * * *** *** **
658254 TCATAATTTGATGTTTTACGTCAAG-AAACAAGAAGTAAAAGCCATCCATTGACAAGAAAAGTTT
125 TCATAATTTAATG-TCTAC-ACTAGCAAATGTGAAACGAAAGCCATCCATTGACAAGAAAAGTCC
** ** * **
658318 ATATATAGTCACTCATATTTTTGAAAGCCTTGTTACTCGTTTTATGTAGTTTTATAGCTTTATAA
188 ATATATAGTCACTCATACCTTTGAAAGCCTAATTACTCGCTTTAAATAGTTTTATAGCTTTATAA
* * * * * * * *
658383 ATTATTTTAAATTGGATTTTTTTTACTTTTAGTTAAAATAGATCATAATTTGATGTTTGCATTGA
253 ATGATTTTAAAGTGAATTTTTCTCACTTTTAATTAAAACAAATCATAATTTGATGTTTGCATTGA
*
658448 GAAACGTGAAGCAAAATCCATCCA
318 AAAACGTGAAGCAAAATCCATCCA
* * * * * * * *
658472 TTGATAAGAAAACTACATTTATAGTCACTCATGCCTTTGAAGGCCTTATTACTCGA-TTTAAGTG
1 TTGACAAGAAAAATACATTTATAGTCACTCATACCTTCGAAAGCCTAATTACTC-ACTTTAAATA
* * * *
658536 ATTTTATAACT-TTATAAATAATTTT-AAATT-AATTTTTTTCATTTTCTA-TTAGAACAAATCA
65 ATTTTAT-ACTCTTATAAATAATTTTAAAATTGAATTTTTCTCACTTT-TAGTCAAAACAAATCA
* * * *
658597 TAATTTAATGTCTACACTAGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAAAGGTCCATTTA
128 TAATTTAATGTCTACACTAGCAAATGTGAAACGAAAGCCATCCATTGACAAGAAAAGTCCATATA
** * * * *
658662 TAGTCACTCATACCTTTGAAAGTGTAATTATTGGCTTTAAATAGTTTTGTA-ATCTTATAAATGA
193 TAGTCACTCATACCTTTGAAAGCCTAATTACTCGCTTTAAATAGTTTTATAGCT-TTATAAATGA
*
658726 TTTTAAAAGTGAATTTTTCTCATTTTTAATTAAAACAAATCATAATTTGATGTTTGCATCT-AAA
257 TTTT-AAAGTGAATTTTTCTCACTTTTAATTAAAACAAATCATAATTTGATGTTTGCAT-TGAAA
* * *
658790 AAC-TAGAATCGAAGTCCATCCA
320 AACGT-GAAGCAAAATCCATCCA
***
658812 TTGACAA-AAAAATTTTTTTATAGTCACTCATACCTTCGAAAGCCTAATTACTCACTTTAAATAA
1 TTGACAAGAAAAATACATTTATAGTCACTCATACCTTCGAAAGCCTAATTACTCACTTTAAATAA
* * *
658876 TTTTATATTCTTATAAATTATTTTAAAATTGAATTTTTCTCACTTTTAGTCAAAACAGATCATAA
66 TTTTATACTCTTATAAATAATTTTAAAATTGAATTTTTCTCACTTTTAGTCAAAACAAATCATAA
* * * * * * * * * *
658941 TTTGATGTTTACATTATCAAATGTGAAACGGAAGCCATACATTAATAA-AAATAGCCCATTTATA
131 TTTAATGTCTACACTAGCAAATGTGAAACGAAAGCCATCCATTGACAAGAAA-AGTCCATATATA
* * *** * * * * *
659005 ATCATTCACGTCTTCGAAAGCCTTATTACTAGCTTTATATAGTTTTATAACTTTATAAATGATTT
195 GTCACTCATACCTTTGAAAGCCTAATTACTCGCTTTAAATAGTTTTATAGCTTTATAAATGATTT
* * * *
659070 TCAATTGAATTTTTTTCATTTTT
260 TAAAGTGAATTTTTCTCACTTTT
659093 GGTTAGGGTC
Statistics
Matches: 754, Mismatches: 168, Indels: 81
0.75 0.17 0.08
Matches are distributed among these distances:
338 9 0.01
339 224 0.30
340 162 0.21
341 239 0.32
342 114 0.15
343 6 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (341 bp):
TTGACAAGAAAAATACATTTATAGTCACTCATACCTTCGAAAGCCTAATTACTCACTTTAAATAA
TTTTATACTCTTATAAATAATTTTAAAATTGAATTTTTCTCACTTTTAGTCAAAACAAATCATAA
TTTAATGTCTACACTAGCAAATGTGAAACGAAAGCCATCCATTGACAAGAAAAGTCCATATATAG
TCACTCATACCTTTGAAAGCCTAATTACTCGCTTTAAATAGTTTTATAGCTTTATAAATGATTTT
AAAGTGAATTTTTCTCACTTTTAATTAAAACAAATCATAATTTGATGTTTGCATTGAAAAACGTG
AAGCAAAATCCATCCA
Found at i:659061 original size:510 final size:512
Alignment explanation
Indices: 658039--659091 Score: 1165
Period size: 510 Copynumber: 2.1 Consensus size: 512
658029 TATGATCTTG
* * * * *
658039 TAAATGATTTTGAATTGAATGTTTTTTCATTTT-TTTTA-AA-AAGATCATAATTTATTGTTTAC
1 TAAATAATTTTAAATTGAAT-TTTTTTCATTTTCTATTAGAACAA-ATCATAATTTAATGTCTAC
* * * * * * *
658101 ATCAAGAAACAT-T-AGGTGAAATCCATCCATTGATAAGAATAGTCCATTTATAGTCACACATGC
64 A-CTAGGAA-ATGTGAAGCGAAAGCCATCCATTGACAAGAATAGTCCATTTATAGTCACACATAC
* * *
658164 CTTCGAAAGTCCAATTACATGCTTTAAATGGTTTTATACTGCTATAAATGATTTCAAAATTGAAT
127 CTTCGAAAGTCCAATTACATGCTTTAAATAGTTTTATAATGCTATAAATGATTTCAAAAGTGAAT
* * * * *
658229 ATTTCTTATGTTTCATTACACTAGATCATAATTTGATGTTTTACGTCAAGAAACAAGAAGTAAAA
192 ATTTCTCATGTTTAATTAAACTAAATCATAATTTGATGTTTTACATCAAGAAACAAGAAGTAAAA
* ** * ** **
658294 GCCATCCATTGACAAGAAAAGTTTATATATAGTCACTCATATTTTTGAAAGCCTTGTTACTCGTT
257 GCCATCCATTGACAAGAAAAATTTATATATAGTCACTCATACCTTCGAAAGCCTAATTACTCACT
** * * * * * *
658359 TTATGTAGTTTTATAGCTTTATAAATTATTTTAAATTGGATTTTTTTTACTTTTAGTTAAAATAG
322 TTAAATAATTTTATAGCTTTATAAATTATTTTAAATTGAATTTTTCTCACTTTTAGTCAAAACAG
* * * * * *
658424 ATCATAATTTGATGTTTGCATTGAGAAACGTGAAGCAAAATCCATCCATTGATAAGAAAACTACA
387 ATCATAATTTGATGTTTACATTGACAAACGTGAAACAAAAGCCATACATTAATAAGAAAACTACA
* * * * *
658489 TTTATAGTCACTCATGCCTTTGAAGGCCTTATTACTCGATTTAAGTGATTTTATAACTTTA
452 TTTATAATCACTCACGCCTTCGAAAGCCTTATTACTAGATTTAAGTGATTTTATAACTTTA
658550 TAAATAATTTTAAATT-AATTTTTTTCATTTTCTATTAGAACAAATCATAATTTAATGTCTACAC
1 TAAATAATTTTAAATTGAATTTTTTTCATTTTCTATTAGAACAAATCATAATTTAATGTCTACAC
*
658614 TAGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAA-AGGTCCATTTATAGTCACTCATACCTT
66 TAGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAATA-GTCCATTTATAGTCACACATACCTT
* ** * * * *
658678 TGAAAGTGTAATTA-TTGGCTTTAAATAGTTTTGTAAT-CTTATAAATGATTTTAAAAGTGAATT
130 CGAAAGTCCAATTACAT-GCTTTAAATAGTTTTATAATGC-TATAAATGATTTCAAAAGTGAATA
* * * **
658741 TTTCTCATTTTTAATTAAAAC-AAATCATAATTTGATG-TTTGCATCTAA-AAACTAGAA-TCGA
193 TTTCTCATGTTTAATT-AAACTAAATCATAATTTGATGTTTTACATC-AAGAAACAAGAAGTAAA
* *
658802 AGTCCATCCATTGACAA-AAAAATTTTTTTATAGTCACTCATACCTTCGAAAGCCTAATTACTCA
256 AG-CCATCCATTGACAAGAAAAATTTATATATAGTCACTCATACCTTCGAAAGCCTAATTACTCA
*
658866 CTTTAAATAATTTTATA-TTCTTATAAATTATTTTAAAATTGAATTTTTCTCACTTTTAGTCAAA
320 CTTTAAATAATTTTATAGCT-TTATAAATTATTTT-AAATTGAATTTTTCTCACTTTTAGTCAAA
* **
658930 ACAGATCATAATTTGATGTTTACATT-ATCAAATGTGAAACGGAAGCCATACATTAATAA-AAAT
383 ACAGATCATAATTTGATGTTTACATTGA-CAAACGTGAAACAAAAGCCATACATTAATAAGAAA-
* * * *
658993 AGC-CCATTTATAATCATTCACGTCTTCGAAAGCCTTATTACTAGCTTTATA-T-AGTTTTATAA
446 A-CTACATTTATAATCACTCACGCCTTCGAAAGCCTTATTACTAGATTTA-AGTGA-TTTTATAA
659055 CTTTA
508 CTTTA
* *
659060 TAAATGATTTTCAATTGAATTTTTTTCATTTT
1 TAAATAATTTTAAATTGAATTTTTTTCATTTT
659092 TGGTTAGGGT
Statistics
Matches: 451, Mismatches: 72, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
508 1 0.00
509 88 0.20
510 182 0.40
511 175 0.39
512 5 0.01
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (512 bp):
TAAATAATTTTAAATTGAATTTTTTTCATTTTCTATTAGAACAAATCATAATTTAATGTCTACAC
TAGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAATAGTCCATTTATAGTCACACATACCTTC
GAAAGTCCAATTACATGCTTTAAATAGTTTTATAATGCTATAAATGATTTCAAAAGTGAATATTT
CTCATGTTTAATTAAACTAAATCATAATTTGATGTTTTACATCAAGAAACAAGAAGTAAAAGCCA
TCCATTGACAAGAAAAATTTATATATAGTCACTCATACCTTCGAAAGCCTAATTACTCACTTTAA
ATAATTTTATAGCTTTATAAATTATTTTAAATTGAATTTTTCTCACTTTTAGTCAAAACAGATCA
TAATTTGATGTTTACATTGACAAACGTGAAACAAAAGCCATACATTAATAAGAAAACTACATTTA
TAATCACTCACGCCTTCGAAAGCCTTATTACTAGATTTAAGTGATTTTATAACTTTA
Found at i:659289 original size:14 final size:15
Alignment explanation
Indices: 659270--659299 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
659260 ACTTTTAAAC
659270 TAAGTTT-ATGAATA
1 TAAGTTTGATGAATA
659284 TAAGTTTGATGAATA
1 TAAGTTTGATGAATA
659299 T
1 T
659300 TAATTTTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (15 bp):
TAAGTTTGATGAATA
Found at i:659579 original size:74 final size:74
Alignment explanation
Indices: 659449--659589 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 74
659439 ATAAATGGAA
* * * *
659449 TAAATCTTACTAATAATTATAATAAAAAATATTTCAATGATCATCATTTGATGAATACACATTTA
1 TAAATCTTACTAATAATTATAATAAAAAATATTTCAATAATCATAATTTAAGGAATACACATTTA
659514 TAGTAGGTT
66 TAGTAGGTT
* ** * *
659523 TAAATCTTA-TAAATAATTATAATAAAGAATATTTCAATAATTGTAATTTAAGGAATATATATTT
1 TAAATCTTACT-AATAATTATAATAAAAAATATTTCAATAATCATAATTTAAGGAATACACATTT
659587 ATA
65 ATA
659590 AGTATAGGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
73 1 0.02
74 56 0.98
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (74 bp):
TAAATCTTACTAATAATTATAATAAAAAATATTTCAATAATCATAATTTAAGGAATACACATTTA
TAGTAGGTT
Found at i:663210 original size:21 final size:20
Alignment explanation
Indices: 663166--663207 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
663156 TGTTAAGTGA
663166 TTAATTTATGTTATTTTAGT
1 TTAATTTATGTTATTTTAGT
663186 TTAATTTTATGTTATTTT-GT
1 TTAA-TTTATGTTATTTTAGT
663206 TT
1 TT
663208 TAAATTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (20 bp):
TTAATTTATGTTATTTTAGT
Found at i:670437 original size:25 final size:26
Alignment explanation
Indices: 670389--670444 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
670379 CATGGTTAAA
*
670389 GCCATAGTTTGTGATATACGTGGCAAG
1 GCCATAGGTTGT-ATATACGTGGCAAG
* *
670416 GCCATAGGTTGT-TATATGTGGCTAG
1 GCCATAGGTTGTATATACGTGGCAAG
670441 GCCA
1 GCCA
670445 CAAGTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 15 0.58
27 11 0.42
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (26 bp):
GCCATAGGTTGTATATACGTGGCAAG
Found at i:679217 original size:25 final size:26
Alignment explanation
Indices: 679149--679217 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 26
679139 CTATTAGACA
679149 TGGCTAGGGCCAT-AGTTTGTGATATACG
1 TGGCTA-GGCCATAAG-TTGT-ATATACG
* * * *
679177 TGGCAAGGGCACAAGTTGT-TATATG
1 TGGCTAGGCCATAAGTTGTATATACG
679202 TGGCTAGGCCATAAGT
1 TGGCTAGGCCATAAGT
679218 AATATTCATG
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
25 18 0.55
27 8 0.24
28 7 0.21
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (26 bp):
TGGCTAGGCCATAAGTTGTATATACG
Found at i:694871 original size:342 final size:342
Alignment explanation
Indices: 694051--694908 Score: 799
Period size: 344 Copynumber: 2.5 Consensus size: 342
694041 AAGTCTATCC
* ** ** *
694051 ATAGTCACTCATACCTTTGAAAGCCTTGTTACTCATTTTAAATAGTTTTATAATCTTATAAATGA
1 ATAGTCACTCATGCCTTCAAAAGCCTAATTACTCACTTTAAATAGTTTTATAATCTTATAAATGA
* * * *
694116 TATTAAATTGAATTGTTCTTC-TTTTTTAGTTAAAACATATCACAATTTATTGTTTGCATTAGGA
66 TTTTAAATT-AATTGTTTTTCATTTTTT-GTTAAAACAGATCATAATTTATTGTTTGCA-TAGGA
* * * **
694180 AATGTG-AAGCAAGCGCCATCCATTAACAAGAAAAGTCCATTTATAGTCACCAACGCTTTGGAAA
128 AATGTGAAAGCAAGAGCCACCCATTAACAAGAAAAGTCCATTTATAGTCACCAACGCCTTAAAAA
* * *
694244 GCCTTATTACTCGCTTTAAATGGTTTTATAATCTTATAAATGGTATTAAATTGAATCTCTTTTTT
193 GCCTTATTACTCGCTTTAAATGATTTTATAATATTATAAATGGTACTAAATTGAATCTCTTTTTT
* * *
694309 CAGGTTTTGTTAAAACATATCATAATTTCTTGTTTGCATTGGGAAATATGAAAGAAACGCCAACC
258 CA-GTTTTGTTAAAACAGATCATAATTTCTTGTTTGCATTAGGAAACATGAAAGAAACGCCAACC
* * **
694374 ATTGACTGGAAAAACCCATTT
322 ACTAACAAGAAAAACCCATTT
* ** *
694395 ATAGTCACTTATGCCTTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAAT-A
1 ATAGTCACTCATGCCTTCAAAAGCCTAATTACTCACTTTAAATAGTTTTATAATCTTATAAATGA
* * * * * *
694459 TTTTTAAATCAAAATTGTTTTT-ATTTCTTGCTAAAATAGATCATAA-TTAGATGTTTGTATCAG
66 -TTTTAAAT--TAATTGTTTTTCATTTTTTGTTAAAACAGATCATAATTTA-TTGTTTGCAT-AG
* * * *** *
694522 GAAATGTGAAATG-AA-AGTCACCCATTAACAATAAAAGTCCATTTCTAGTCATTGATGCCTTAA
126 GAAATGTGAAA-GCAAGAGCCACCCATTAACAAGAAAAGTCCATTTATAGTCACCAACGCCTTAA
* * * *
694585 AAAGCCTTGTTACTCGTTTTAATTGATTTTATAATATTATAAATGGTGCTAAATTGAAT-T-TTT
190 AAAGCCTTATTACTCGCTTTAAATGATTTTATAATATTATAAATGGTACTAAATTGAATCTCTTT
* * * * *
694648 TTTCA-TTTTGGATTAAAGCAGATCATAATTTGTTGTTTGCATTAGGAAACATGAAAGGAATGCT
255 TTTCAGTTTT-G-TTAAAACAGATCATAATTTCTTGTTTGCATTAGGAAACATGAAAGAAACGCC
* **
694712 ACCCACTAACAAGAAAAGTCCATTT
318 AACCACTAACAAGAAAAACCCATTT
********** * *
694737 ATTA-TCACTCATGCNNNNNNNNNNCTAATTATTCACTTTAAATTGTTTTATAATCTTATAAATG
1 A-TAGTCACTCATGCCTTCAAAAGCCTAATTACTCACTTTAAATAGTTTTATAATCTTATAAATG
* * *
694801 ATTTTGAATTAATTGTTTTTTCATTTTTTGTTCAAACAGATCATAATTTATTATTTGCGAT-GGA
65 ATTTTAAATTAATTG-TTTTTCATTTTTTGTTAAAACAGATCATAATTTATTGTTTGC-ATAGG-
* * * * *
694865 AAATGTG-AAGCAA-ATGCCATCCTTTGATAAGAAAAGTCTATTTA
127 AAATGTGAAAGCAAGA-GCCACCCATTAACAAGAAAAGTCCATTTA
694909 AAATCANNNN
Statistics
Matches: 413, Mismatches: 82, Indels: 40
0.77 0.15 0.07
Matches are distributed among these distances:
340 10 0.02
341 13 0.03
342 175 0.42
343 14 0.03
344 182 0.44
345 18 0.04
346 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (342 bp):
ATAGTCACTCATGCCTTCAAAAGCCTAATTACTCACTTTAAATAGTTTTATAATCTTATAAATGA
TTTTAAATTAATTGTTTTTCATTTTTTGTTAAAACAGATCATAATTTATTGTTTGCATAGGAAAT
GTGAAAGCAAGAGCCACCCATTAACAAGAAAAGTCCATTTATAGTCACCAACGCCTTAAAAAGCC
TTATTACTCGCTTTAAATGATTTTATAATATTATAAATGGTACTAAATTGAATCTCTTTTTTCAG
TTTTGTTAAAACAGATCATAATTTCTTGTTTGCATTAGGAAACATGAAAGAAACGCCAACCACTA
ACAAGAAAAACCCATTT
Found at i:695503 original size:170 final size:169
Alignment explanation
Indices: 694051--697601 Score: 1403
Period size: 171 Copynumber: 20.8 Consensus size: 169
694041 AAGTCTATCC
* * ** *** * *
694051 ATAGTCACTCATACCTTTGAAAGCCTTGTTACTCATTTTAAATAGTTTTATAATCTTATAAATGA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATCA
* * * * * * *
694116 TATTAAATTGAATTGTTCTTCTTTTTTAGTTAAAACATATCACAATTT-ATTGTTTGCATTAGGA
65 TTTTAAATTGAATT-TTTTTCATTTTTAGATAAAACAAATCATAATTTGA-TGTTTGCATTGGGA
* ** * * *
694180 AATGTGAAGCAAGCGCCATCCATTAACAAGAAAAGTCCATTT
128 AACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * ** * * *
694222 ATAGTCA-CCAACGCTTTGGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTTATAAATG
1 ATAGTCATTC-ATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATC
* * * * * **
694286 GTATTAAATTGAATCTCTTTTTTCAGGTTTT-GTTAAAACATATCATAATTTCTTGTTTGCATTG
64 ATTTTAAATTGAA--T-TTTTTTCA-TTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTG
** * * ** *
694350 GGAAATATGAAAG-AAACGCCAACCATTGACTGGAAAAA-CCCATTT
125 GGAAACGTG-AAGCAAAAGCCATCCATTGA-TAAAAAAAGTCCATTT
**
694395 ATAGTCACTT-ATGCCTTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAAT-
1 ATAGTCA-TTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATC
** * * * * * **
694458 ATTTTTAAATCAAAATTGTTTTT-ATTTCTT-GCTAAAATAGATCATAATTAGATGTTTGTATCA
64 A-TTTTAAAT-TGAATT-TTTTTCATTT-TTAGATAAAACAAATCATAATTTGATGTTTGCATTG
* *** * * * * *
694521 GGAAATGTGAAATGAAAGTCACCCATTAACAATAAAAGTCCATTT
125 GGAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * * * **
694566 CTAGTCATTGATGCCTTAAAAAGCCTTGTTACTCGTTTTAATTGATTTTATAATATTATAAATGG
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTATAATCTTATAAATCA
** * * * * *
694631 TGCTAAATTGAATTTTTTTTCA-TTTTGGATTAAAGCAGATCATAATTTGTTGTTTGCATTAGGA
65 TTTTAAATTGAA-TTTTTTTCATTTTTAGA-TAAAACAAATCATAATTTGATGTTTGCATTGGGA
* * * * * * * * *
694695 AACATGAAAG-GAATGCTACCCACTAACAAGAAAAGTCCATTT
128 AACGTG-AAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* ********** ** * *
694737 ATTA-TCACTCATGCNNNNNNNNNNCTAATTA-TTCACTTTAAATTGTTTTATAATCTTATAAAT
1 A-TAGTCATTCATGCCTTCAAAAGCCTTGTTACTT-GCTTTAAA-GGTTTTATAATCTTATAAAT
* * * * * * *
694800 GATTTTGAATT-AATTGTTTTTTCATTTTTTGTTCAAACAGATCATAATTT-ATTATTTGCGA-T
63 CATTTTAAATTGAA-T-TTTTTTCATTTTTAGATAAAACAAATCATAATTTGA-TGTTTGC-ATT
* * * * * *
694862 GGAAAATGTGAAGCAAATGCCATCCTTTGATAAGAAAAGTCTATTT
124 GGGAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * ********************* ** * *
694908 AAAATCANNNNNNNNNNNNNNNNNNNNNTTACTCACTTTAAGTGGTTTTATAA-CTTTATAAATG
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTATAATC-TTATAAATC
* * * * * * *
694972 A-TTTAAATTGAATTTTTTGT-ATTTTTGGTTCAAATAGATTATAATTTGATGTTTGCATCT-AG
64 ATTTTAAATTGAATTTTTT-TCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCAT-TGGG
* ** *
695034 AAACGTAGAA-CAAACGCCATGTATTGATAAGAAAAA-TCCAATT
127 AAACGT-GAAGCAAAAGCCATCCATTGATAA-AAAAAGTCCATTT
* * ** ** * *
695077 ATGGTC-TTCCATGTCTTTGAAAGCCTAATTA-TTCGCTTTAAACGGTTTTATAATCATATAAAA
1 ATAGTCATT-CATGCCTTCAAAAGCCTTGTTACTT-GCTTTAAA-GGTTTTATAATCTTATAAAT
* * * * * * * * *
695140 GATTTTAAGTTAAATTTTCTTTCATTTCTGGTTAAAA-AGGATCATAATTTGTTGTGTGCATTAG
63 CATTTTAAATTGAATTTT-TTTCATTTTTAGATAAAACA-AATCATAATTTGATGTTTGCATT-G
* * * * * ** * **
695204 GG-AACATGAACCGAAAGCCATCCGTTGACT-AGAGTAGTCTATCC
125 GGAAACGTGAAGCAAAAGCCATCCATTGA-TAAAAAAAGTCCATTT
*** * * * * * *
695248 ATAGTTGCTCAAGCTTTCATAAGCCTTGTTACTCGCTTTAAATGGTTTTATAAACTTATAAATGA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATCA
** * * ** * * *
695313 TTTTAAAATAAAACTTTTTTCATTTTTTGATAAAACAAAAAATAATTTAATATTTGCAAT-GGAA
65 TTTT-AAATTGAATTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGAA
* * * *
695377 ACATGAAGCAAATGCTATCCATTGATAAGAAAAGTCCATTT
129 ACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * *
695418 ATAGTCATTGATGCCTTCAAAAGCCTTATTACTTGCTTTAAAGCATTTTGATAATCTTATAAATT
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAAG-GTTTT-ATAATCTTATAAATC
* * * * * * * *
695483 ATTTTGAATTGAATTTTTTTCATTTTTGGCTCAAATAGATCATAATTTGCTATTTGCATTGGGAA
64 ATTTTAAATTGAATTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGAA
** * ** * *
695548 ACGTGTGGTAAAAGTTATCCATTGATAAAAAAAATCCATCT
129 ACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * *
695589 ATAGTCACTCATGCTTTCGAAAA-CCTTGTTACTTGCTTTAAATGG-TTTATAATCTTATAAATA
1 ATAGTCATTCATGCCTTC-AAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATC
* * * * * * * * *
695652 ATTTTAAGTTGCATTTTTTTTCATTTTT-CATCAAAACATATCACT-GTTTGATGCTCGGATGGG
64 ATTTTAAATTG-AATTTTTTTCATTTTTAGAT-AAAACAAATCA-TAATTTGATGTTTGCATTGG
* * ** * *
695715 GAACCGTAAAGTGAAAGCCATCCATTGATAAAAAATGTGCATTT
126 GAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * *
695759 ATATTCACTT-ATACATTCAAAAGCCTTCTTATTTGCTTTAAGTGGTTTTATAAAT-TTATAAAA
1 ATAGTCA-TTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTAT-AATCTTATAAAT
* * ** * * * * * ***
695822 CATTATAAGTTGAAATTTAATTCATTTTTTTGCTAAAGCAAATCATAATTTGTTGTTTGTATCAA
63 CATTTTAAATTG-AATTTTTTTCA-TTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGG
* *
695887 GAAACTTGAAGCAAAAGCCATCCAATGATAAAAAAAGTCCATTT
126 GAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * **
695931 ATAGAT-ACTCATACCTTCGAAACCCTTATTACTCGCTTTCAATTGTTTTATAATCTTATAAATC
1 ATAG-TCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTT-AAAGGTTTTATAATCTTATAAATC
* * * ** * * *
695995 ATGTTAAATT-AATTTTTTTTCAATTTTAGTTAAAACGGATTATAATTTGATGTTTGCATTAGCA
64 ATTTTAAATTGAA-TTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGA
* *
696059 AACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
128 AACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* ** * * * * * *
696101 ATA-TCACTCATGCCTTTGAAAGCCTTATTACTCGATTTAAGTGGTTGTAT-AGCTCTATAAAT-
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTATAATCT-TATAAATC
* * * * * * *
696163 GTTTTCAATTGAGGTTTTTTTTATTTTTAG-TCTAAACAAATCATAATTTGTTGTTTTCATTGGG
64 ATTTTAAATTGA-ATTTTTTTCATTTTTAGAT-AAAACAAATCATAATTTGATGTTTGCATTGGG
* * *** *
696227 AATCATGAAGCAAAAATGATCCATTGATAAAAAAAGTCTATTT
127 AAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * *
696270 ATAGTCACTT-ATGCCTTCAAAAGCCGTGTTACTAGCTTT-ATGTAGTTTTATAA-CATTATAAA
1 ATAGTCA-TTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAAG--GTTTTATAATC-TTATAAA
* * * * * * *
696332 TGATTTTAAATTGAATTTTTTTCACTTATAGTTAAAACAAATCATAATTTGATATTTACATTGGA
62 TCATTTTAAATTGAATTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGG
** ** ** *
696397 AAACGTGAAGTGAAA-CGCATCCATAAATAAGGAAAGCCCATTT
127 AAACGTGAAGCAAAAGC-CATCCATTGATAAAAAAAGTCCATTT
* * * * * * *
696440 ATAATCATTAATGCCTTTAAAAGCCTTGTTACTTGCTTTAAGTGGCTTTATAA-CTATATAATTG
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTATAATCT-TATAAATC
* * * * * * *
696504 ACTTTAGATTGAATTTTTTTTCACTTTTAGTTAAAATATATCATAATTT-ATTATTTGCATTGGG
64 ATTTTAAATTGAA-TTTTTTTCATTTTTAGATAAAACAAATCATAATTTGA-TGTTTGCATTGGG
* * *
696568 AAACATGAAGCGAACAA--CATCCATTGA-AAAAAATG-CTATTT
127 AAACGTGAAGC-AA-AAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * * * *
696609 ATAGTCATTTACT-CATTCGAAAGCTTTTTTACTCGTTTTAAGTGGTTTAATAAGT-TTATAAAT
1 ATAGTCATTCA-TGCCTTCAAAAGCCTTGTTACTTGCTTTAA-AGGTTTTATAA-TCTTATAAAT
* * * * * * * * ** * * * **
696672 GATTTTAAATTGAAGTGTTTTTCACTTTTGGTTCATATAGGTCATAATTTGGTGTCTACATCAGG
63 CATTTTAAATTGAA-TTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGG
** ** * * * *
696737 AAATATGAAGTGAAAGTCACCCAATTG-CAAGAAAAGTCCATTT
127 AAACGTGAAGCAAAAGCCATCC-ATTGATAAAAAAAGTCCATTT
* * ** * * *** *
696780 ATACTC-TCACATGCCTTTGAAAG-CTTAGCTA-TTCGCTTTAAATGATTTTACGGTGTTATAAA
1 ATAGTCAT-TCATGCCTTCAAAAGCCTT-GTTACTT-GCTTTAAA-GGTTTTATAATCTTATAAA
* * * * * * * * * **
696842 TTATTTTAAGTTGAATTTTCTTTCATTTTTGGTTAAAA-AGGATCAAAATTTGTTGTGTGTATCA
62 TCATTTTAAATTGAATTTT-TTTCATTTTTAGATAAAACA-AATCATAATTTGATGTTTGCATTG
* * * ** **
696906 GGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTTAATCC
125 GGAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * ** * *
696951 ACAGTCCTTCAT-TCTTCGAAAGTCTTGTTACTTGCTTTAAATAATTTTATAATCTTATAACTGA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATCA
* * * ***
697015 TTTCAAAATTGAATTTTTCTT-ATTTTTGGTTAAAACTGGTCATAATTTGATGTTTGC--TGGG-
65 TTT-TAAATTGAATTTTT-TTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGA
* ** * *
697076 AACTTGAAGCAAAAATTC-TCTATTGATAAGAAAAA-TCCATTG
128 AACGTGAAGC-AAAAGCCATCCATTGATAA-AAAAAGTCCATTT
* * * * * * * * * *
697118 ATAGTCATTCATGGCTTCGAAAGCATTATTAGTCGCTTTAAATGATTTTATAGTTTTATAAATGA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATCA
* ** * * * * *
697183 ATTTAGGTTGAGTTTTCCTTCATTTTT-GATTTAAACAAATCATAATTTGTTGTTTGAATTGGGA
65 TTTTAAATTGAATTTT-TTTCATTTTTAGA-TAAAACAAATCATAATTTGATGTTTGCATTGGGA
* * **
697247 AACATGAAGCAACAATG--ATCTATTGGCAAAAAAAGTCCATTT
128 AACGTGAAGCAA-AA-GCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * * * * *
697289 ATAGTCATTTATGCCTGCGAAAGCCTTATTACTTGCTTTATATGGATATATAATCTTCTGAATAA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTA-AAGGTTTTATAATCTTATAAATCA
* * * * * * * ** *
697354 TTTTCAATTAAATTAGTTTTTAATCTTTGGATGAAA-AGATCATAATTTTTTGCTTGCATTGGGA
65 TTTTAAATTGAATT--TTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGA
* * * *
697418 AACGTGAAGCGAAAGCCATCTATTTATAAAAAAAATCCATTT
128 AACGTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
* * * * * * * * *
697460 ATAGTCACTGATGCTTTTAAAAACTTTGTTAC-TCCTTTAAACGG-TTCATAATCTTATAAATAA
1 ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAA-GGTTTTATAATCTTATAAATCA
* * * * * * *
697523 TTTAAAATTGAGTTTATTTCATTTTTGGCTAAAACAGATCATAATTTGATGCTTGCATTGGGAAA
65 TTTTAAATTGAATTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGAAA
697588 CGTG-AGTCAAAAGC
130 CGTGAAG-CAAAAGC
697602 TATCNNNNNN
Statistics
Matches: 2569, Mismatches: 659, Indels: 307
0.73 0.19 0.09
Matches are distributed among these distances:
167 62 0.02
168 139 0.05
169 389 0.15
170 642 0.25
171 1025 0.40
172 165 0.06
173 133 0.05
174 14 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (169 bp):
ATAGTCATTCATGCCTTCAAAAGCCTTGTTACTTGCTTTAAAGGTTTTATAATCTTATAAATCAT
TTTAAATTGAATTTTTTTCATTTTTAGATAAAACAAATCATAATTTGATGTTTGCATTGGGAAAC
GTGAAGCAAAAGCCATCCATTGATAAAAAAAGTCCATTT
Found at i:695785 original size:511 final size:505
Alignment explanation
Indices: 695263--696600 Score: 1199
Period size: 511 Copynumber: 2.6 Consensus size: 505
695253 TGCTCAAGCT
* * *
695263 TTCATAAGCCTTGTTACTCGCTTTAAATGGTTTTATAAACTTATAAATGATTTTAAAATAAAACT
1 TTCAAAAGCCTTGTTACTAGCTTTAAGTGGTTTTATAAACTTATAAATGATTTTAAAATAAAA-T
** * *
695328 TTTTTCATTTTTTGATAAAACAAAAAATAATTTAATATTTGCAATGGAAACATGAAGCAAATGCT
65 TTTTTCATTTTTTGATAAAACAAATCATAATTTGATATTTGCAATGGAAACATGAAGCAAAAGC-
*
695393 ATCCATTGATAAGAAAAGTCCATTTATAGTCATTGATGCCTTCAAAAGCCTTATTACTTGCTTTA
129 ATCCATTGATAAGAAAAGTCCATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTTGCTTTA
* * * *
695458 AAGCATTTTGATAATCTTATAAATTATTTTGAATTGAA-TTTTTTTCATTTTTGGCTCAAATAGA
194 AAGC-TTTT-ATAATCTTATAAATTATTTT-AATTGAATTTTTTTTCAATTTTAGTTAAAATAGA
* ** * ** *
695522 TCATAATTTGCTATTTGCATTGGGAAACGTGTGGTAAAAGTTATCCATTGATAAAAAAAATCCAT
256 TCATAATTTGATATTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAAAAAAAATCCAT
* * * *
695587 CTATAGTCACTCATG-CTTTCGAAAACCTTGTTACTTGCTTTAAATGGTT-TATA-ATCTTATAA
321 CTATA-TCACTCATGCCTTT-GAAAACCTTATTACTCGATTTAAATGGTTGTATAGCTC-TATAA
* * *
695649 ATAATTTT-AAGTTGCA-TTTTTTTTCATTTTTCA-TCAAAACATATCACT-GTTTGATGCTCGG
383 AT-ATTTTCAA-TTG-AGTTTTTTTT-ATTTTT-AGTCAAAACAAATCA-TAATTTGATGCTCGC
* ** * * *
695710 ATGGGGAACCGTAAAGTGAAAGCCATCCATTGATAAAAAATGTGC-ATTTATATTCACTTATACA
442 ATGGGGAACCATAAAGCAAAAACCATCCATTGATAAAAAAAGT-CTATTTATAGTCACTTATACA
* * * * ** * ** *
695774 TTCAAAAGCCTTCTTATTTGCTTTAAGTGGTTTTATAAATTTATAAAACATTATAAGTTGAAATT
1 TTCAAAAGCCTTGTTACTAGCTTTAAGTGGTTTTATAAACTTATAAATGATTTTAAAATAAAATT
* * * * * *
695839 TAATTCATTTTTTTGCTAAAGCAAATCATAATTTGTTGTTTGTATCAA--GAAACTTGAAGCAAA
66 T-TTTCA-TTTTTTGATAAAACAAATCATAATTTGATATTTG---CAATGGAAACATGAAGCAAA
* * * * * * * *
695902 AGCCATCCAATGATAAAAAAAGTCCATTTATAGAT-ACTCATACCTTCGAAACCCTTATTACTCG
126 AG-CATCCATTGATAAGAAAAGTCCATTTATAG-TCATTAATGCCTTCAAAAGCCTTATTACTTG
* * *
695966 CTTTCAATTG-TTTTATAATCTTATAAATCATGTTAAATT-AATTTTTTTTCAATTTTAGTTAAA
189 CTTT-AA-AGCTTTTATAATCTTATAAATTAT-TTTAATTGAATTTTTTTTCAATTTTAGTTAAA
** * * * * * *
696029 ACGGATTATAATTTGATGTTTGCATTAGCAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAG
251 ATAGATCATAATTTGATATTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAAAAAAAA
* * *
696094 TCCATTTATATCACTCATGCCTTTGAAAGCCTTATTACTCGATTTAAGTGGTTGTATAGCTCTAT
316 TCCATCTATATCACTCATGCCTTTGAAAACCTTATTACTCGATTTAAATGGTTGTATAGCTCTAT
* * * * ** *
696159 AAATGTTTTCAATTGAGGTTTTTTTTATTTTTAGTCTAAACAAATCATAATTTGTTGTTTTCATT
381 AAATATTTTCAATTGA-GTTTTTTTTATTTTTAGTCAAAACAAATCATAATTTGATGCTCGCATG
* * ** * *
696224 GGGAATCATGAAGCAAAAATGATCCATTGATAAAAAAAGTCTATTTATAGTCACTTATGCC
445 GGGAACCATAAAGCAAAAACCATCCATTGATAAAAAAAGTCTATTTATAGTCACTTATACA
* * * * * *
696285 TTCAAAAGCCGTGTTACTAGCTTTATGTAGTTTTAT-AACATTATAAATGATTTTAAATTGAATT
1 TTCAAAAGCCTTGTTACTAGCTTTAAGTGGTTTTATAAAC-TTATAAATGATTTTAAAATAAAAT
* * * * * * * * *
696349 TTTTTCACTTATAGTTAAAACAAATCATAATTTGATATTTACATTGGAAAACGTGAAGTGAAACG
65 TTTTTCATTTTTTGATAAAACAAATCATAATTTGATATTTGCAATGG-AAACATGAAG-CAAAAG
** * * * * *
696414 CATCCATAAATAAGGAAAGCCCATTTATAATCATTAATGCCTTTAAAAGCCTTGTTACTTGCTTT
128 CATCCATTGATAAGAAAAGTCCATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTTGCTTT
* * *
696479 AAGTGGC-TTTATAA-C-TATATAATTGACTTTAGATTGAATTTTTTTTCACTTTTAGTTAAAAT
193 AA--AGCTTTTATAATCTTATA-AATT-ATTTTA-ATTGAATTTTTTTTCAATTTTAGTTAAAAT
* *
696541 ATATCATAATTT-ATTATTTGCATTGGGAAACATGAAGCGAACAA--CATCCATTGA-AAAAAA
253 AGATCATAATTTGA-TATTTGCATTGGGAAACGTGAAGC-AA-AAGCCATCCATTGACAAAAAA
696601 TGCTATTTAT
Statistics
Matches: 657, Mismatches: 135, Indels: 72
0.76 0.16 0.08
Matches are distributed among these distances:
506 2 0.00
507 4 0.01
508 11 0.02
509 102 0.16
510 80 0.12
511 223 0.34
512 150 0.23
513 77 0.12
514 4 0.01
515 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (505 bp):
TTCAAAAGCCTTGTTACTAGCTTTAAGTGGTTTTATAAACTTATAAATGATTTTAAAATAAAATT
TTTTCATTTTTTGATAAAACAAATCATAATTTGATATTTGCAATGGAAACATGAAGCAAAAGCAT
CCATTGATAAGAAAAGTCCATTTATAGTCATTAATGCCTTCAAAAGCCTTATTACTTGCTTTAAA
GCTTTTATAATCTTATAAATTATTTTAATTGAATTTTTTTTCAATTTTAGTTAAAATAGATCATA
ATTTGATATTTGCATTGGGAAACGTGAAGCAAAAGCCATCCATTGACAAAAAAAATCCATCTATA
TCACTCATGCCTTTGAAAACCTTATTACTCGATTTAAATGGTTGTATAGCTCTATAAATATTTTC
AATTGAGTTTTTTTTATTTTTAGTCAAAACAAATCATAATTTGATGCTCGCATGGGGAACCATAA
AGCAAAAACCATCCATTGATAAAAAAAGTCTATTTATAGTCACTTATACA
Found at i:695981 original size:172 final size:170
Alignment explanation
Indices: 695268--696500 Score: 578
Period size: 170 Copynumber: 7.2 Consensus size: 170
695258 AAGCTTTCAT
* * * ** * * *
695268 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAAACTTATAAATGATTTTAAAATAAAACTTT-TT
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATAAAACATGTT-AAATTAAA-TTTAAT
* * * ** * * * * * * *
695332 TCATTTTTTGATAAAACAAAAAATAATTTAATATTTGCA-ATGGAAACATGAAGCAAATGCTATC
64 TCAATTTTAGCTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCATC
* * * * * *
695396 CATTGATAAGAAAAGTCCATTTATAGTCATTGATGCCTTCAA
129 CATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* ** ** * * * **
695438 AAGCCTTATTACTTGCTTTAAAG-CATTTTGATAATCTTATAAATTATTTTGAATTGAATTTTTT
1 AAGCCTTATTACTCGCTTT-AAGTGGTTTT-ATAATCTTATAAAACATGTTAAATTAAATTTAAT
* * * * * * * ** * ** * **
695502 TCATTTTTGGCTCAAATAGATCATAATTTGCTATTTGCATTGGGAAACGTGTGGTAAAAGTTATC
64 TCAATTTTAGCTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCATC
* * * * *
695567 CATTGATAAAAAAAATCCATCTATAGTCACTCATGCTTTCGA
129 CATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* * * * * * * * **
695609 AAACCTTGTTACTTGCTTTAAATGG-TTTATAATCTTATAAATA-ATTTTAAGTTGCATTTTTTT
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATAAA-ACATGTTAAATT-AAATTTAAT
* * * * * * * ** * * * **
695672 TCATTTTTCATC-AAAACATATCACT-GTTTGATGCTCGGATGGGGAACCGTAAAGTGAAAGCCA
64 TCAATTTT-AGCTAAAACAAATCA-TAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCA
* * * * * *
695735 TCCATTGATAAAAAATGTGCATTTATATTCACTTATACATTCAA
127 TCCATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* * * *
695779 AAGCCTTCTTATTTGCTTTAAGTGGTTTTATAAAT-TTATAAAACAT-TATAAGTTGAAATTTAA
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTAT-AATCTTATAAAACATGT-TAAATT-AAATTTAA
* * * * * *
695842 TTCATTTTTTTGCTAAAGCAAATCATAATTTGTTGTTTGTATCAAG-AAACTTGAAGCAAAAGCC
63 TTCA-ATTTTAGCTAAAACAAATCATAATTTGATGTTTGCAT-AAGCAAACGTGAAGCAAAAGCC
*
695906 ATCCAATGATAAAAAAAGTCCATTTATAGAT-ACTCATACCTTCGA
126 ATCCATTGATAAAAAAAGTCCATTTATA-ATCACTCATACCTTCGA
* * * * **
695951 AACCCTTATTACTCGCTTTCAA-TTGTTTTATAATCTTATAAATCATGTTAAATTAATTTTTTTT
1 AAGCCTTATTACTCGCTTT-AAGTGGTTTTATAATCTTATAAAACATGTTAAATTAAATTTAATT
* ** * *
696015 CAATTTTAGTTAAAACGGATTATAATTTGATGTTTGCATTAGCAAACGTGAAGCAAAAGCCATCC
65 CAATTTTAGCTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCATCC
* * * *
696080 ATTGACAAGAAAAGTCCATTTAT-ATCACTCATGCCTTTGA
130 ATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* * * ** * * ** **
696120 AAGCCTTATTACTCGATTTAAGTGGTTGTAT-AGCTCTAT-AAATGTTTTCAATTGAGGTTTTTT
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCT-TATAAAACATGTTAAATT-AAATTTAAT
* * * * ** * * * ***
696183 TTATTTTTAGTCT-AAACAAATCATAATTTGTTGTTTTCATTGGGAATCATGAAGCAAAAATGAT
64 TCAATTTTAG-CTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCAT
* * * * *
696247 CCATTGATAAAAAAAGTCTATTTATAGTCACTTATGCCTTCAA
128 CCATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* * * * * ** * * **
696290 AAGCCGTGTTACTAGCTTTATGTAGTTTTATAA-CATTATAAATGATTTTAAATTGAATTTTTTT
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATC-TTATAAAACATGTTAAATTAAATTTAATT
* * * * * ** * **
696354 CACTTATAGTTAAAACAAATCATAATTTGATATTTACATTGGAAAACGTGAAGTGAAA-CGCATC
65 CAATTTTAGCTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGC-CATC
** ** * * * * **
696418 CATAAATAAGGAAAGCCCATTTATAATCATTAATGCCTTTAA
129 CATTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
* * *
696460 AAGCCTTGTTACTTGCTTTAAGTGGCTTTATAA-CTATATAA
1 AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCT-TATAA
696501 TTGACTTTAG
Statistics
Matches: 823, Mismatches: 206, Indels: 68
0.75 0.19 0.06
Matches are distributed among these distances:
168 16 0.02
169 143 0.17
170 399 0.48
171 146 0.18
172 114 0.14
173 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (170 bp):
AAGCCTTATTACTCGCTTTAAGTGGTTTTATAATCTTATAAAACATGTTAAATTAAATTTAATTC
AATTTTAGCTAAAACAAATCATAATTTGATGTTTGCATAAGCAAACGTGAAGCAAAAGCCATCCA
TTGATAAAAAAAGTCCATTTATAATCACTCATACCTTCGA
Found at i:696272 original size:339 final size:340
Alignment explanation
Indices: 695854--696615 Score: 809
Period size: 339 Copynumber: 2.2 Consensus size: 340
695844 CATTTTTTTG
*** * * *
695854 CTAAAGCAAATCATAATTTGTTGTTTGT-ATCAAGAAACTTGAAGCAAAAGCCATCCAATGATAA
1 CTAAA-CAAATCATAATTTGTTGTTT-TCATTGGGAAACATGAAGCAAAA-ACATCCATTGATAA
* * * *
695918 AAAAAGTCCATTTATAGAT-ACTCATACCTTCGAAACCCTTATTACTCGCTTTCAAT-T-GTTTT
63 AAAAAGTCTATTTATAG-TCACTCATACCTTCAAAACCCGTATTACTAGCTTT--ATGTAGTTTT
* ** *
695980 ATAATC-TTATAAATCATGTTAAATT-AATTTTTTTTCAATTTTAGTTAAAACGGATTATAATTT
125 ATAA-CATTATAAATCATGTTAAATTGAA-TTTTTTTCAATTATAGTTAAAACAAATCATAATTT
* * * ** *
696043 GATGTTTGCATTAGCAAACGTGAAGCAAAA-GCCATCCATTGACAAGAAAAGTCCATTTAT-ATC
188 GATATTTACATTAGAAAACGTGAAGCAAAACG-CATCCATAAACAAGAAAAGCCCATTTATAATC
* * * * *
696106 ACTCATGCCTTTGAAAGCCTTATTACTCGATTTAAGTGG-TTGTATAGCTCTATAAATG-TTTTC
252 ACTAATGCCTTTAAAAGCCTTATTACTCGATTTAAGTGGCTT-TATAACTATATAAATGACTTT-
* *
696169 A-ATTGAGGTTTTTTTT-ATTTTTAGT
315 AGATTGA-ATTTTTTTTCACTTTTAGT
* *
696194 CTAAACAAATCATAATTTGTTGTTTTCATTGGGAATCATGAAGCAAAAATGATCCATTGATAAAA
1 CTAAACAAATCATAATTTGTTGTTTTCATTGGGAAACATGAAGCAAAAA-CATCCATTGATAAAA
* * * *
696259 AAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCGTGTTACTAGCTTTATGTAGTTTTATAAC
65 AAAGTCTATTTATAGTCACTCATACCTTCAAAACCCGTATTACTAGCTTTATGTAGTTTTATAAC
* * *
696324 ATTATAAATGATTTTAAATTGAATTTTTTTCACTTATAGTTAAAACAAATCATAATTTGATATTT
130 ATTATAAATCATGTTAAATTGAATTTTTTTCAATTATAGTTAAAACAAATCATAATTTGATATTT
* ** * * *
696389 ACATTGGAAAACGTGAAGTGAAACGCATCCATAAATAAGGAAAGCCCATTTATAATCATTAATGC
195 ACATTAGAAAACGTGAAGCAAAACGCATCCATAAACAAGAAAAGCCCATTTATAATCACTAATGC
* * * *
696454 CTTTAAAAGCCTTGTTACTTGCTTTAAGTGGCTTTATAACTATATAATTGACTTTAGATTGAATT
260 CTTTAAAAGCCTTATTACTCGATTTAAGTGGCTTTATAACTATATAAATGACTTTAGATTGAATT
696519 TTTTTTCACTTTTAGT
325 TTTTTTCACTTTTAGT
* * * *
696535 -TAAA-ATATATCATAATTTATTATTTGCATTGGGAAACATGAAGCGAACAACATCCATTGA-AA
1 CTAAACA-A-ATCATAATTTGTTGTTTTCATTGGGAAACATGAAGC-AAAAACATCCATTGATAA
*
696597 AAAATG-CTATTTATAGTCA
63 AAAAAGTCTATTTATAGTCA
696616 TTTACTCATT
Statistics
Matches: 353, Mismatches: 53, Indels: 33
0.80 0.12 0.08
Matches are distributed among these distances:
337 2 0.01
338 4 0.01
339 206 0.58
340 78 0.22
341 59 0.17
342 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (340 bp):
CTAAACAAATCATAATTTGTTGTTTTCATTGGGAAACATGAAGCAAAAACATCCATTGATAAAAA
AAGTCTATTTATAGTCACTCATACCTTCAAAACCCGTATTACTAGCTTTATGTAGTTTTATAACA
TTATAAATCATGTTAAATTGAATTTTTTTCAATTATAGTTAAAACAAATCATAATTTGATATTTA
CATTAGAAAACGTGAAGCAAAACGCATCCATAAACAAGAAAAGCCCATTTATAATCACTAATGCC
TTTAAAAGCCTTATTACTCGATTTAAGTGGCTTTATAACTATATAAATGACTTTAGATTGAATTT
TTTTTCACTTTTAGT
Found at i:696796 original size:340 final size:340
Alignment explanation
Indices: 695854--696803 Score: 744
Period size: 339 Copynumber: 2.8 Consensus size: 340
695844 CATTTTTTTG
* * * *** * ** *
695854 CTAAAGCAAATCATAATTTGTTGTTTGTATCAAGAAACTTGAAGCAAAAGCCATCCAATGATAAA
1 CTAAA-CAAATCATAATTTATTATTTGCATTGGGAAACATGAAGCAAAAATCATCCATTGATAAA
* * * * * * * * * * *
695919 AAAAGTCCATTTATAGAT-ACTCATACCTTCGAAACCCTTATTACTCGCTTTCAA-TTGTTTTAT
65 AAAAGTCTATTTATAG-TCACTTATGCATTCAAAAGCCGTGTTACTAGCTTT-AAGTAGTTTAAT
* * * * * ** *
695982 AATC-TTATAAATCATGTTAAATT-AATTTTTTTTCAATTTTAGTTAAAACGGATTATAATTTGA
128 AA-CATTATAAATGATTTTAAATTGAA-TGTTTTTCACTTATAGTTAAAACAAATCATAATTTGA
* * * * * *
696045 TGTTTGCATTA-GCAAACGTGAAG-CAAAAGCCAT-C-C-ATTGACAAGAAAAGTCCATTTATAT
191 TATCTACA-TAGGAAAAC-TGAAGTGAAACG-CATCCACAATTG-CAAGAAAAGTCCATTTATAT
* * * * *
696105 CACTCATGCCTTTGAAAGCCTTATTACTCGATTTAAGTGGTTGTATAGCTCTATAAATGTTTTCA
252 CTCACATGCCTTTGAAAGCCTTATTACTCGATTTAAGTGGTTGTATAACTATATAAATGCTTTCA
* *
696170 ATTGAGGTTTTTTTTATTTTTAGT
317 ATTGAGATTTTTTTTACTTTTAGT
* * * * *
696194 CTAAACAAATCATAATTTGTTGTTTTCATTGGGAATCATGAAGCAAAAATGATCCATTGATAAAA
1 CTAAACAAATCATAATTTATTATTTGCATTGGGAAACATGAAGCAAAAATCATCCATTGATAAAA
* * *
696259 AAAGTCTATTTATAGTCACTTATGCCTTCAAAAGCCGTGTTACTAGCTTTATGTAGTTTTATAAC
66 AAAGTCTATTTATAGTCACTTATGCATTCAAAAGCCGTGTTACTAGCTTTAAGTAGTTTAATAAC
* *
696324 ATTATAAATGATTTTAAATTGAATTTTTTTCACTTATAGTTAAAACAAATCATAATTTGATATTT
131 ATTATAAATGATTTTAAATTGAATGTTTTTCACTTATAGTTAAAACAAATCATAATTTGATATCT
* * * * * *
696389 ACATTGGAAAACGTGAAGTGAAACGCATCCATAAAT--AAGGAAAGCCCATTTATAATCATTA-A
196 ACATAGGAAAAC-TGAAGTGAAACGCATCCACAATTGCAAGAAAAGTCCATTTAT-ATC-TCACA
* * * * *
696451 TGCCTTTAAAAGCCTTGTTACTTGCTTTAAGTGGCTT-TATAACTATATAATTGACTTT-AGATT
258 TGCCTTTGAAAGCCTTATTACTCGATTTAAGTGG-TTGTATAACTATATAAATG-CTTTCA-ATT
696514 GA-ATTTTTTTTCACTTTTAGT
320 GAGATTTTTTTT-ACTTTTAGT
*
696535 -TAAA-ATATATCATAATTTATTATTTGCATTGGGAAACATGAAGCGAACAA-CATCCATTGA-A
1 CTAAACA-A-ATCATAATTTATTATTTGCATTGGGAAACATGAAGC-AAAAATCATCCATTGATA
* * * ** * * * *
696596 AAAAATG-CTATTTATAGTCATTTACT-CATTCGAAAGCTTTTTTACTCGTTTTAAGTGGTTTAA
63 AAAAAAGTCTATTTATAGTCACTTA-TGCATTCAAAAGCCGTGTTACTAGCTTTAAGTAGTTTAA
** * * * * * ** *
696659 TAAGTTTATAAATGATTTTAAATTGAAGTGTTTTTCACTTTTGGTTCATATAGGTCATAATTTGG
127 TAACATTATAAATGATTTTAAATTGAA-TGTTTTTCACTTATAGTTAAAACAAATCATAATTTGA
*
696724 TGTCTACATCAGGAAATA-TGAAGTGAAA-GTCA-CC-CAATTGCAAGAAAAGTCCATTTATACT
191 TATCTACAT-AGGAAA-ACTGAAGTGAAACG-CATCCACAATTGCAAGAAAAGTCCATTTATA-T
696785 CTCACATGCCTTTGAAAGC
252 CTCACATGCCTTTGAAAGC
696804 TTAGCTATTC
Statistics
Matches: 494, Mismatches: 89, Indels: 54
0.78 0.14 0.08
Matches are distributed among these distances:
338 7 0.01
339 258 0.52
340 158 0.32
341 64 0.13
342 7 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (340 bp):
CTAAACAAATCATAATTTATTATTTGCATTGGGAAACATGAAGCAAAAATCATCCATTGATAAAA
AAAGTCTATTTATAGTCACTTATGCATTCAAAAGCCGTGTTACTAGCTTTAAGTAGTTTAATAAC
ATTATAAATGATTTTAAATTGAATGTTTTTCACTTATAGTTAAAACAAATCATAATTTGATATCT
ACATAGGAAAACTGAAGTGAAACGCATCCACAATTGCAAGAAAAGTCCATTTATATCTCACATGC
CTTTGAAAGCCTTATTACTCGATTTAAGTGGTTGTATAACTATATAAATGCTTTCAATTGAGATT
TTTTTTACTTTTAGT
Found at i:697159 original size:168 final size:170
Alignment explanation
Indices: 695276--697328 Score: 476
Period size: 170 Copynumber: 12.1 Consensus size: 170
695266 ATAAGCCTTG
** * * **
695276 TTACTCGCTTTAAATGGTTTTATAAACTTATAAATGATTTTAAAATAAAACTTTT--TTCATTTT
1 TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAATTT-AAATTGAA-TTTTCCTTCA-TTT
** * * * *
695339 TTGA-TAAAACAAAAAATAATTTAATATTTGCAAT-GGAAACATGAAGC--AAATGCTATCCATT
63 TTGATTAAAACAAATCATAATTTGATGTTTG-ACTGGGAAACATGAAGCAAAAATG--ATCTATT
* * * * * * *
695400 GATAAGAAAAGTCCATTTATAGTCATTGATGCCTTCAAAAGCCTTA
125 GACAAAAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
* ** * * * *
695446 TTACTTGCTTTAAAGCATTTTGATAATCTTATAAATTATTTTGAATTGAATTTT-TTTCATTTTT
1 TTACTCGCTTTAAATAATTTT-ATAATCTTATAAATGAATTTAAATTGAATTTTCCTTCATTTTT
** * * * * * * * ** * * * * *
695510 GGCTCAAATAGATCATAATTTGCTATTTGCATTGGGAAACGTGTGGTAAAAGTTATCCATTGATA
65 GATTAAAACAAATCATAATTTGATGTTTG-ACTGGGAAACATGAAGCAAAAATGATCTATTGACA
* * * * * * *
695575 AAAAAAATCCATCT-ATAGTCACTCATGCTTTCGAAAACCTTG
129 AAAAAAGTCCAT-TGATAGTCATTCATGCCTGCGAAAGCATTA
* ** * * **
695617 TTACTTGCTTTAAAT-GGTTTATAATCTTATAAAT-AATTTTAAGTTGCATTTTTTTTCATTTTT
1 TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAA-TTTAAATTGAATTTTCCTTCATTTTT
* * * * ** * * * ** *** *
695680 CATCAAAACATATCACT-GTTTGATGCTCGGA-TGGGGAACCGTAAAGTGAAAGCCATCCATTGA
65 GATTAAAACAAATCA-TAATTTGATG-TTTGACT-GGGAAACATGAAGCAAAAATGATCTATTGA
* * * * * * * * * * *
695743 TAAAAAATGTGCATTTATATTCACTT-ATACATTCAAAAGCCTTC
127 CAAAAAAAGTCCATTGATAGTCA-TTCATGCCTGCGAAAGCATTA
* * * ** * * **
695787 TTATTTGCTTTAAGTGGTTTTATAAAT-TTATAAA--ACATTATAAGTTGAAATTTAATTCATTT
1 TTACTCGCTTTAAATAATTTTAT-AATCTTATAAATGA-ATT-TAAATTGAATTTTCCTTCA--T
* * * ** * *** * *
695849 TTTTG-CTAAAGCAAATCATAATTTGTTGTTTGTA-TCAAGAAACTTGAAGCAAAAGCCATCCAA
61 TTTTGATTAAAACAAATCATAATTTGATGTTTG-ACT-GGGAAACATGAAGCAAAAATGATCTAT
* * * * * * *
695912 TGATAAAAAAAGTCCATTTATAGAT-ACTCATACCTTCGAAACCCTTA
124 TGACAAAAAAAGTCCATTGATAG-TCATTCATGCCTGCGAAAGCATTA
* ** * ** *
695959 TTACTCGCTTTCAATTGTTTTATAATCTTATAAAT-CATGTTAAATT-AATTTTTTTTCAATTTT
1 TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAAT-TTAAATTGAATTTTCCTTCATTTTT
** * * * * * *** *
696022 -AGTTAAAACGGATTATAATTTGATGTTTGCATTAGCAAACGTGAAGCAAAAGCCATCCATTGAC
65 GA-TTAAAACAAATCATAATTTGATGTTTG-ACTGGGAAACATGAAGCAAAAATGATCTATTGAC
* * * ** *
696086 AAGAAAAGTCCATTTATA-TCACTCATGCCTTTGAAAGCCTTA
128 AAAAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
* * ** * * * * * * *
696128 TTACTCGATTTAAGTGGTTGTAT-AGCTCTATAAATG-TTTTCAATTGAGGTTTT-TTTTATTTT
1 TTACTCGCTTTAAATAATTTTATAATCT-TATAAATGAATTTAAATTGA-ATTTTCCTTCATTTT
* * * * *
696190 T-AGTCT-AAACAAATCATAATTTGTTGTTTTCATTGGGAATCATGAAGCAAAAATGATCCATTG
64 TGA-T-TAAAACAAATCATAATTTGATG-TTTGACTGGGAAACATGAAGCAAAAATGATCTATTG
* * * * * ** *
696253 ATAAAAAAAGTCTATTTATAGTCACTT-ATGCCTTCAAAAGCCGTG
126 ACAAAAAAAGTCCATTGATAGTCA-TTCATGCCTGCGAAAGCATTA
* ** * * * * *
696298 TTACTAGCTTTATGTAGTTTTATAA-CATTATAAATGATTTTAAATTGAATTTT-TTTCACTTAT
1 TTACTCGCTTTAAATAATTTTATAATC-TTATAAATGAATTTAAATTGAATTTTCCTTCATTTTT
* * * ** * * **
696361 -AGTTAAAACAAATCATAATTTGATATTT-ACATTGGAAAACGTGAAG-TGAAACGCATCCATAA
65 GA-TTAAAACAAATCATAATTTGATGTTTGAC--TGGGAAACATGAAGCAAAAATG-ATCTATTG
* ** * * * * *** * *
696423 ATAAGGAAAGCCCATTTATAATCATTAATGCCTTTAAAAGCCTTG
126 ACAAAAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
* * *** * * * ** *
696468 TTACTTGCTTTAAGTGGCTTTATAA-CTATATAATTGACTTTAGATTGAATTTTTTTTCACTTTT
1 TTACTCGCTTTAAATAATTTTATAATCT-TATAAATGAATTTAAATTGAATTTTCCTTCATTTTT
* * * * * * *
696532 -AGTTAAAATATATCATAATTT-ATTATTTGCATTGGGAAACATGAAGCGAACAA-CATCCATTG
65 GA-TTAAAACAAATCATAATTTGA-TGTTTG-ACTGGGAAACATGAAGC-AAAAATGATCTATTG
* * * * * * * *
696594 A-AAAAAATG-CTATTTATAGTCATTTACT-CATTCGAAAGCTTTT
126 ACAAAAAAAGTCCATTGATAGTCATTCA-TGCCTGCGAAAGCATTA
* * ** * * *
696637 TTACTCGTTTTAAGTGGTTTAATAAGT-TTATAAATGATTTTAAATTGAAGTGTTT--TTCACTT
1 TTACTCGCTTTAAATAATTTTATAA-TCTTATAAATGAATTTAAATTGAA-T-TTTCCTTCATTT
* * * * ** * * * * ** * * * *
696699 TTGGTTCATATAGGTCATAATTTGGTGTCT-ACATCAGGAAATATGAAGTGAAAGTCACCCAATT
63 TTGATTAAAACAAATCATAATTTGATGTTTGAC-T-GGGAAACATGAAGCAAAAATGA-TCTATT
* * * * **
696763 G-CAAGAAAAGTCCATTTATACTC-TCACATGCCTTTGAAAGC-TTA
125 GACAAAAAAAGTCCATTGATAGTCAT-TCATGCCTGCGAAAGCATTA
* * * *** * * * * *
696807 GCTATTCGCTTTAAATGATTTTACGGTGTTATAAATTATTTTAAGTTGAATTTTCTTTCATTTTT
1 -TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAATTTAAATTGAATTTTCCTTCATTTTT
* * * * * * *** *
696872 GGTTAAAA-AGGATCAAAATTTGTTGTGTGTA-TCAGGAAACATGAAGCAAAAGCCATCCATTGA
65 GATTAAAACA-AATCATAATTTGATGTTTG-ACT-GGGAAACATGAAGCAAAAATGATCTATTGA
* ** ** * * * * *
696935 CAAGAAAAGTTAATCCACAGTCCTTCAT-TCTTCGAAAGTC-TTG
127 CAAAAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAG-CATTA
* * *
696978 TTACTTGCTTTAAATAATTTTATAATCTTATAACTG-ATTTCAAAATTGAATTTTTCTT-ATTTT
1 TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAATTT--AAATTGAATTTTCCTTCATTTT
* *** * ** *
697041 TGGTTAAAACTGGTCATAATTTGATGTTTG-CTGGG-AACTTGAAGCAAAAATTCTCTATTGATA
64 TGATTAAAACAAATCATAATTTGATGTTTGACTGGGAAACATGAAGCAAAAATGATCTATTGACA
* *
697104 AGAAAAA-TCCATTGATAGTCATTCATGGCTTCGAAAGCATTA
129 A-AAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
* * * * ** *
697146 TTAGTCGCTTTAAATGATTTTATAGTTTTATAAATGAATTTAGGTTGAGTTTTCCTTCATTTTTG
1 TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAATTTAAATTGAATTTTCCTTCATTTTTG
* * * * *
697211 ATTTAAACAAATCATAATTTGTTGTTTGAATTGGGAAACATGAAGCAACAATGATCTATTGGCAA
66 ATTAAAACAAATCATAATTTGATGTTTG-ACTGGGAAACATGAAGCAAAAATGATCTATTGACAA
* * *
697276 AAAAAGTCCATTTATAGTCATTTATGCCTGCGAAAGCCTTA
130 AAAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
*
697317 TTACTTGCTTTA
1 TTACTCGCTTTA
697329 TATGGATATA
Statistics
Matches: 1441, Mismatches: 350, Indels: 183
0.73 0.18 0.09
Matches are distributed among these distances:
167 49 0.03
168 91 0.06
169 282 0.20
170 493 0.34
171 404 0.28
172 108 0.07
173 14 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (170 bp):
TTACTCGCTTTAAATAATTTTATAATCTTATAAATGAATTTAAATTGAATTTTCCTTCATTTTTG
ATTAAAACAAATCATAATTTGATGTTTGACTGGGAAACATGAAGCAAAAATGATCTATTGACAAA
AAAAGTCCATTGATAGTCATTCATGCCTGCGAAAGCATTA
Found at i:699819 original size:170 final size:170
Alignment explanation
Indices: 699303--700820 Score: 847
Period size: 170 Copynumber: 8.9 Consensus size: 170
699293 ATGTAGACAC
* * * * *
699303 CAAATTATGACCTGTATTAACAAAAAGTGAAAAACACTTCAATTTAAAATCATTTATAAACTTAT
1 CAAATTATGATCTGTTTTAACTAAAAGTGAAAAA-AATTCAATTTAAAATCATTTAT-AAGTTAT
* * * ** *
699368 TAAACCACTTAAAACGAGTAA-AAGAGCTTTCGAA-TAAGTAAATGACTATAAATAG-CATTTT-
64 AAAACCACTTAAAGCGAGTAACAAGA-CTTTCAAAGGCAGTAAGTGACTATAAATAGAC-TTTTC
*
699429 TT-TCAATGGATGG-TGTTCGCTTCATGTTTGCCAATGCAAATAA
127 TTGTCAATGGATGGCT-TTCGCTTCATGTTTGCCAATGCAAACAA
* * * * *
699472 TAAATTATGATCTGTTTTAACTAAAACTGAAAAAAAATTCAATCTAAAGTCAATTATATAGTTAT
1 CAAATTATGATCTGTTTTAACTAAAAGTG-AAAAAAATTCAATTTAAAATCATTTATA-AGTTAT
* * * * * * * *
699537 AAAGCCACTTAAAGCAAGTAACAAGGCTTTTAAAGGCATTAA-TGATTATAAATGGGCTTTTCTT
64 AAAACCACTTAAAGCGAGTAACAAGACTTTCAAAGGCAGTAAGTGACTATAAATAGACTTTTCTT
** * * * *
699601 GTTTATGGATGGCTTTCGCTTCACGTTTTCCAATGTAAACAT
129 GTCAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
* *
699643 CAAATTATGATTTGTTTTAACTATAAGTGAAAAAAATTCAATTTAAAATCATTTATAATGTTATA
1 CAAATTATGATCTGTTTTAACTAAAAGTGAAAAAAATTCAATTTAAAATCATTTATAA-GTTATA
* * * * *
699708 AAACCACATAAAGCTAGTAACACGACTTGT-GAAGGCA-TAAGTGACTATAAGTAGACTTCTT-T
65 AAACCACTTAAAGCGAGTAACAAGACTT-TCAAAGGCAGTAAGTGACTATAAATAGACTT-TTCT
*** ** * *
699770 TGTCAATGGATCATTTTTACTTCATGATTCCCAATGCAAACAA
128 TGTCAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
* * * * * * *
699813 CAAATTATGATTTG-TTTAGACCAAAAATAAAAAAAAACTCAATTGAAAATCATTTATAGAGCTA
1 CAAATTATGATCTGTTTTA-ACTAAAAGT-GAAAAAAATTCAATTTAAAATCATTTATA-AGTTA
* * * * * *
699877 TACAACCACTTAAATCGAGTAATAAGGCTTTCAAAGGCA-TGAGTGA-TATAAATGGACTTTTCT
63 TAAAACCACTTAAAGCGAGTAACAAGACTTTCAAAGGCAGTAAGTGACTATAAATAGACTTTTCT
* * *
699940 TGTCAATGGATGGCTTTTGCTTCATGTTTGCTAATGCAAACAT
128 TGTCAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
* * * * *
699983 CAAATTATAATCCGTTTTAACTAAAAGTAAAAAAAATT-AATTTAACATGATTTATAAGATTATA
1 CAAATTATGATCTGTTTTAACTAAAAGTGAAAAAAATTCAATTTAAAATCATTTATAAG-TTATA
* * * * * * *
700047 AAA-CAATTGAAAGCGATTCATA-AAG-GTTTCGAAGGTA-TGAGT-ATCTATAAATGGACTTTT
65 AAACCACTT-AAAGCGAGT-A-ACAAGACTTTCAAAGGCAGTAAGTGA-CTATAAATAGACTTTT
* * * * ** * *
700107 TTTGTCAATAGATGGCTTTTGCTTCAAGTTT-CTTGATACAAATAA
126 CTTGTCAATGGATGGCTTTCGCTTCATGTTTGC-CAATGCAAACAA
* * * * * * * * ** *
700152 CAAATTATGAT-TCGATTTAGCAAAAAAATGAATAACATTTCAACTTATAATGTTTTATAAATTT
1 CAAATTATGATCT-GTTTTAAC-TAAAAGTGAA-AAAAATTCAATTTAAAATCATTTAT-AAGTT
* * * * * ** * *
700216 ATAAAATCACTTAAAACGAATAAGAAGGCTTTTGAAGGTA-TAAGTGAATATAAAT-GAACATTT
62 ATAAAACCACTTAAAGCGAGTAACAAGACTTTCAAAGGCAGTAAGTGACTATAAATAG-AC-TTT
* * * * * * * * *
700279 T-TTGTCAATGGTTGGCTTTCGCTTTACGGTTCCCCATCCGAACAT
125 TCTTGTCAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
* * * * * * *
700324 CAAA-CAGTGATATGTTTTGA-TGAAAACTTAAAAAAAATGCAACTTAAAATCATTTATAAGATT
1 CAAATTA-TGATCTGTTTTAACT-AAAA-GTGAAAAAAATTCAATTTAAAATCATTTATAAG-TT
* * ** * * * * * *
700387 ATAAAACCATTTAAAGCAAGTAACAAGGTTTTCGAAA-GTA-TGAGCGACTATAGATGGATTTTT
62 ATAAAACCACTTAAAGCGAGTAACAAGACTTTC-AAAGGCAGTAAGTGACTATAAATAGACTTTT
* * ** * ** * * *
700450 TTTATCAATGGATAACTTTTGCCACATGTTTCCCAATGCAAATAG
126 CTTGTCAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
* * * * * * *
700495 CAAATTATGATCTATTTGAGCCAAAAATGAAAAACATTCAATTCAAAATCATTTATAAGATTATC
1 CAAATTATGATCTGTTTTAACTAAAAGTGAAAAAAATTCAATTTAAAATCATTTATAAG-TTAT-
* * * * * ** *
700560 AAAATGC-TTTAAAGCGAATAATAAGGCTTTTGAAGGCA-TCAA-TGACTATAAATGGACTTTTC
64 AAAA-CCACTTAAAGCGAGTAACAAGACTTTCAAAGGCAGT-AAGTGACTATAAATAGACTTTTC
* * * * * *
700622 TTCTTAATGGATAGCATTT-GCTTCATGTTT-CCATTGCAAATAT
127 TTGTCAATGGATGGC-TTTCGCTTCATGTTTGCCAATGCAAACAA
* ** * * * * * *
700665 TAAATTATTTTTTGTTTTATCAAAAAATGAAAAAAGTTTCATTTTAAAATCATTTATAAGTTTAT
1 CAAATTATGATCTGTTTTAACTAAAAGTGAAAAAA-ATTCAATTTAAAATCATTTATAAG-TTAT
* * * * * * ** **
700730 AAAACCATTTCAAGCGAGTAACAAGGCTTAT-GAAGGCA-TGAGTAACTATGGATAGACTACTCT
64 AAAACCACTTAAAGCGAGTAACAAGACTT-TCAAAGGCAGTAAGTGACTATAAATAGACTTTTCT
*
700793 AGTCAATGGATGGCTTTCGCTTCATGTT
128 TGTCAATGGATGGCTTTCGCTTCATGTT
700821 CCCTAANNNN
Statistics
Matches: 1047, Mismatches: 245, Indels: 113
0.75 0.17 0.08
Matches are distributed among these distances:
167 7 0.01
168 44 0.04
169 180 0.17
170 358 0.34
171 338 0.32
172 107 0.10
173 13 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (170 bp):
CAAATTATGATCTGTTTTAACTAAAAGTGAAAAAAATTCAATTTAAAATCATTTATAAGTTATAA
AACCACTTAAAGCGAGTAACAAGACTTTCAAAGGCAGTAAGTGACTATAAATAGACTTTTCTTGT
CAATGGATGGCTTTCGCTTCATGTTTGCCAATGCAAACAA
Found at i:728289 original size:11 final size:11
Alignment explanation
Indices: 728270--728307 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
728260 TAATTGGCTC
*
728270 AATGCTTATAT
1 AATGATTATAT
728281 AATGATTATAT
1 AATGATTATAT
728292 AAT-ATTATA-
1 AATGATTATAT
728301 AATGATT
1 AATGATT
728308 TTAAAATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 3 0.12
10 9 0.36
11 13 0.52
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (11 bp):
AATGATTATAT
Found at i:769834 original size:20 final size:19
Alignment explanation
Indices: 769802--769839 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
769792 NNNNNNTCGC
769802 TTTAAATTGTTTTATAGTTT
1 TTTAAATTGTTTTA-AGTTT
769822 TTTAAA-TGATTTTAAGTT
1 TTTAAATTG-TTTTAAGTT
769840 GAATTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.61
Consensus pattern (19 bp):
TTTAAATTGTTTTAAGTTT
Found at i:804554 original size:161 final size:164
Alignment explanation
Indices: 804277--804636 Score: 388
Period size: 161 Copynumber: 2.2 Consensus size: 164
804267 ATTTAAAAAT
* *
804277 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAATGCCTTCGAAGGCATAAATGAGTATAA
1 ATTTATAAGATTATAAAA-CATTT-AA---AGTAACAAT--CTTCGAAAGCATAAATGACTATAA
* * * * * * * *
804342 ATGGACTTTTCTTTTCAATGGATGGCGTTCGCTTCATGTTTCTTAATGCAAACAATAAATTATGA
59 ATGCACTTTTCTTATCAATGGATGACATTAGCTTCACGTTTCTGAATGCAAACAATAAATTATAA
* * * *
804407 TCTCTTTTAA-CCAAGAATAAATA-AATT-AATTT-AATATC
124 TCTCTTTTAATCAAAAAAGAAACACAATTCAATTTAAAT-TC
* * * *
804445 ATTTATAAGATTATAAAATCATTTAAAGTAACAAT-TTCGAAAGTATGAGTGACTATATATGCAC
1 ATTTATAAGATTATAAAA-CATTTAAAGTAACAATCTTCGAAAGCATAAATGACTATAAATGCAC
* * *
804509 TTTTCTTATCAATGGATGACATTAGCTTCACGTTTCTGAATGCAAATAATAAATTATAATGTGTT
65 TTTTCTTATCAATGGATGACATTAGCTTCACGTTTCTGAATGCAAACAATAAATTATAATCTCTT
* *
804574 TTAATGAAAAAAGAAACACAATTCAATTTAAATTG
130 TTAATCAAAAAAGAAACACAATTCAATTTAAATTC
804609 ATTTATAAGATTATAAAACTATTTAAAG
1 ATTTATAAGATTATAAAAC-ATTTAAAG
804637 CAAGTAACAA
Statistics
Matches: 163, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
161 81 0.50
162 8 0.05
163 5 0.03
164 41 0.25
165 3 0.02
167 2 0.01
168 23 0.14
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (164 bp):
ATTTATAAGATTATAAAACATTTAAAGTAACAATCTTCGAAAGCATAAATGACTATAAATGCACT
TTTCTTATCAATGGATGACATTAGCTTCACGTTTCTGAATGCAAACAATAAATTATAATCTCTTT
TAATCAAAAAAGAAACACAATTCAATTTAAATTC
Found at i:805834 original size:171 final size:160
Alignment explanation
Indices: 805607--805916 Score: 322
Period size: 171 Copynumber: 1.9 Consensus size: 160
805597 CTTTTGAAAT
* * * *
805607 TGAGTGACTATAAATGGACTTGTCTTATCAATGGATAGCTTTTGCTTCACGTTTCCTGATGTAAA
1 TGAGTGACTATAAATGAACTTGTCTTATCAATAGATAGCTTTCGCTTCACGTTTCCTAATGTAAA
* * *
805672 CAAAAAATTATGTTATGTTTTAACCAA-A-AAATAAAGAAAATCCAACTTAAAATCATTTATAAA
66 CAAAAAATTATGATATATTTT---CAATAGAAATAAAAAAAATCCAACTTAAAATCATTTAT-AA
805735 AC-TATAAAACCATTTAAAATGAGNNNNNNNNNNTTCATAGGTA
127 ACTTATAAAACCATTTAAAATGAG----------TTCATAGGTA
* * * *
805778 TGAGTGATTGTAAATGAACTTTTCTTATCAATA-AGTAGCTTTCGCTTCATGTTTCCTAATGTAA
1 TGAGTGACTATAAATGAACTTGTCTTATCAATAGA-TAGCTTTCGCTTCACGTTTCCTAATGTAA
** * *
805842 ACATTAAATTATGATATATTTTCAATAGAAATAAAAAAAATTCAATTTAAAATCATTTATAAACT
65 ACAAAAAATTATGATATATTTTCAATAGAAATAAAAAAAATCCAACTTAAAATCATTTATAAACT
805907 TATAAAACCA
130 TATAAAACCA
805917 CCTAAATCGA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
168 3 0.03
169 5 0.04
170 40 0.33
171 72 0.60
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.35
Consensus pattern (160 bp):
TGAGTGACTATAAATGAACTTGTCTTATCAATAGATAGCTTTCGCTTCACGTTTCCTAATGTAAA
CAAAAAATTATGATATATTTTCAATAGAAATAAAAAAAATCCAACTTAAAATCATTTATAAACTT
ATAAAACCATTTAAAATGAGTTCATAGGTA
Found at i:825615 original size:170 final size:169
Alignment explanation
Indices: 825146--825636 Score: 501
Period size: 170 Copynumber: 2.9 Consensus size: 169
825136 TCGCTTTCAG
* * *
825146 TGGTTTTATAA-CTTTATAAATGATTTTAAATTGAATTTTTTTT--GTTTCAGTTAAAACAGATC
1 TGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAAAAGATC
* * * * *
825208 ATAATTT-TTTATTTACATTGGGAAACATGAATTGAAAGCCATCCACTGACAAGAAAAGTAGATC
65 ATAATTTGTTT-TTT-CACTAGGAAACATGAATTGAAAG-CATCCATTGACAAGAAAAGTAAATT
* * *
825272 TATAGTCACTCGTGCCTTCAAAAGCCTTGTTACTCACTTTAAA
127 TATAGTCACTCATGCCTTCAAAAGCCTTATAACTCACTTTAAA
* * * * *
825315 TGG-TTTATAATCTCATAAATAATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAAAATATAA
1 TGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAAAAGATCA
** * ** * * *
825379 TAATTTGTTGTTTGAATCCA-GAAATGTGAATTGAAAGCAATCCATTGATAATAAAAGTTAATTT
66 TAATTTGTT-TTTTCA-CTAGGAAACATGAATTGAAAGC-ATCCATTGACAAGAAAAGTAAATTT
* * * *
825443 ATAGTCTCTCATACCTTCGAAAGCCTTATAACTCATTTTAAA
128 ATAGTCACTCATGCCTTCAAAAGCCTTATAACTCACTTTAAA
* ** *
825485 TGGTTTTATAATCTTATAAATGGTTTTAGGTTG-ATTTTTTTTCATTTTTAGTTAAAATAGATCA
1 TGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAAAAGATCA
* * * * * **
825549 CAATTTGATTTTTTCACTAGGAAACCTGAAGTGAAAGTCACCCATTAACAAGAAAAGTCCATTTA
66 TAATTTG-TTTTTTCACTAGGAAACATGAATTGAAAG-CATCCATTGACAAGAAAAGTAAATTTA
825614 TAGTCACTCATGCCTTCAAAAGC
129 TAGTCACTCATGCCTTCAAAAGC
825637 NNNNNNNNNN
Statistics
Matches: 258, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
168 35 0.14
169 7 0.03
170 184 0.71
171 31 0.12
172 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (169 bp):
TGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTAGTTAAAAAAGATCA
TAATTTGTTTTTTCACTAGGAAACATGAATTGAAAGCATCCATTGACAAGAAAAGTAAATTTATA
GTCACTCATGCCTTCAAAAGCCTTATAACTCACTTTAAA
Found at i:871091 original size:170 final size:168
Alignment explanation
Indices: 870807--871737 Score: 670
Period size: 170 Copynumber: 5.5 Consensus size: 168
870797 ATGCTTTTGT
*
870807 GCTTTAAATGATTTTATACTATTATAAATGATTTTAAGTTGAATTTGTTTTTCATTTTTAGTTAA
1 GCTTTAAATGATTTTATAATATTATAAATGATTTTAAGTTG-ATTT-TTTTTCA-TTTTAGTTAA
* * * *
870872 AATAGATCACAA-TTCAATGTTTGCATTGGAAA-ATGTGAAGCAAAAGCCATTCATTGACATGAA
63 AGTAGATCACAATTTC-ATGTTTGCATAGGAAACA--TGAAGCAAAAGCCATCCATTGACAAGAA
* *
870935 AAGTCCATTTATAGTTACTCATGCCTTCAAATGCCTTGTTACTC
125 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC
* * * * *
870979 GCTTTAAATGGTTTTACAATTTTATAAATAATTTTAAGTTGATCTTTTTTCATCTTTAGTTAAAG
1 GCTTTAAATGATTTTATAATATTATAAATGATTTTAAGTTGATTTTTTTTCAT-TTTAGTTAAAG
* * ** *
871044 CAGATCACAATTTCATGTTTGCATCAAGAAACATGAAGCGTAAGCCATCCATTGATAAGAAAAGT
65 TAGATCACAATTTCATGTTTGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGT
* * * * *
871109 CCATTTACAATCATTTATGCCTTCAAAAGCGTTGTTACTC
129 CCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC
* * * * *
871149 GCTTTAAATGGTTTCATAATATTATAAATGACTTTAAATTGATTTTTTTTTATTTCTAGTTAAAG
1 GCTTTAAATGATTTTATAATATTATAAATGATTTTAAGTTGATTTTTTTTCATTT-TAGTTAAAG
* * * * * *
871214 TAGATCAGAGTTTGATGTTTGCATTAGGAAACATGAAGAAAAAGCCACCCATTAACAAGAAAAGT
65 TAGATCACAATTTCATGTTTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGT
* * * *
871279 CTATTTTATAGTCACACATGCCTTTAAAAGCCTAGTTACTC
129 CCA-TTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC
* * * ** *
871320 GCTTTGAATAATTTTATAATCTTATAAATGATTTTGAA-TCAAAATATTTTTT-ATTCATT-GTT
1 GCTTTAAATGATTTTATAATATTATAAATGATTTT-AAGT--TGATTTTTTTTCATT--TTAGTT
** * * * ** * * *** *
871382 AAAACA-AACTATAGTTGGATGTTTGCATCAGGAAATATGAAGCAAAA-CTGATTTGTTGACAAA
61 AAAGTAGATC-ACAATTTCATGTTTGCAT-AGGAAACATGAAGCAAAAGC-CATCCATTGACAAG
* * * * * *
871445 AAAAGCCCATTTATAGTCACTCTTGCATTTAAAAGCCTTATTACTT
123 AAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC
* * * ** *
871491 GCTTTAAATGATTTTATATTCTTACAAATGATAAT-AGATTGAACGTTTTTTTCATTTTTAGTTG
1 GCTTTAAATGATTTTATAATATTATAAATGATTTTAAG-TTG-A-TTTTTTTTCA-TTTTAGTT-
* * *** * * *
871555 AAAG-A-ATCATAATGTGTC--GTTTTCACT-GGAAACATGAAATGAAAGCCGTCCATTAACTAG
61 AAAGTAGATCACAAT-T-TCATGTTTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * * *
871615 AAAAGTCTATTTATAGTCACTAAT-ACTGTCGAAAGCCTTGTTTCTC
123 AAAAGTCCATTTATAGTCACTCATGCCT-TCAAAAGCCTTGTTACTC
* * * * * * *
871661 ACTTTAAATGGTTTTATAATCTTATAAAAGATTTTAAATTAATTTCTTTT-ATTTTTCA-TTAAA
1 GCTTTAAATGATTTTATAATATTATAAATGATTTTAAGTTGATTTTTTTTCA-TTTT-AGTTAAA
* *
871724 ATAGATCATAATTT
64 GTAGATCACAATTT
871738 GTTATTTACA
Statistics
Matches: 595, Mismatches: 132, Indels: 70
0.75 0.17 0.09
Matches are distributed among these distances:
166 4 0.01
167 10 0.02
168 15 0.03
169 6 0.01
170 287 0.48
171 155 0.26
172 103 0.17
173 14 0.02
174 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (168 bp):
GCTTTAAATGATTTTATAATATTATAAATGATTTTAAGTTGATTTTTTTTCATTTTAGTTAAAGT
AGATCACAATTTCATGTTTGCATAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
ATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTC
Found at i:871457 original size:342 final size:341
Alignment explanation
Indices: 870807--871504 Score: 712
Period size: 342 Copynumber: 2.0 Consensus size: 341
870797 ATGCTTTTGT
* * * * *
870807 GCTTTAAATGATTTTATACTATTATAAATGATTTTAAGTTGAATTTGTTTTTCATTTTTAGTTAA
1 GCTTTAAATGATTTCATAATATTATAAATGACTTTAAATTGAATTTGTTTTTCATTTCTAGTTAA
* ** * *
870872 AATAGATCACAATTCAATGTTTGCATTGGAAAATGTGAAGCAAAAGCCATTCATTGACATGAAAA
66 AATAGATCACAATTCAATGTTTGCATTGGAAAA-GTGAAGAAAAAGCCACCCATTAACAAGAAAA
* * * * ** *
870937 GTCCATTTATAGTTACTCATGCCTTCAAATGCCTTGTTACTCGCTTTAAATGGTTTTACAATTTT
130 GTCCATTTATAGTCACACATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAATTTTACAATCTT
** * * * * *
871002 ATAAATAATTTTAAGTTGATCTTTTTTCATCTTTAGTTAAAGCAGATCACAATTTCATGTTTGCA
195 ATAAATAATTTTAAGTAAATATTTTTTCATCATTAGTTAAAACAAATCACAATTGCATGTTTGCA
* * * * *
871067 TCAAGAAACATGAAGCGTAAGCCATCCATTGATAAGAAAAGTCCATTTACAATCATTTATGCCTT
260 TCAAGAAACATGAAGCGAAAACCATCCATTGACAAAAAAAGCCCATTTACAATCATTTATGCCTT
871132 CAAAAGCGTTGTTACTC
325 CAAAAGCGTTGTTACTC
* *
871149 GCTTTAAATGGTTTCATAATATTATAAATGACTTTAAATTG-ATTT-TTTTTTATTTCTAGTTAA
1 GCTTTAAATGATTTCATAATATTATAAATGACTTTAAATTGAATTTGTTTTTCATTTCTAGTTAA
* * * **
871212 AGTAGATCAGAGTTTGATGTTTGCATTAGGAAACA-TGAAGAAAAAGCCACCCATTAACAAGAAA
66 AATAGATCACAATTCAATGTTTGCATT-GGAAA-AGTGAAGAAAAAGCCACCCATTAACAAGAAA
* * * *
871276 AGTCTATTTTATAGTCACACATGCCTTTAAAAGCCTAGTTACTCGCTTTGAATAATTTTATAATC
129 AGTCCA-TTTATAGTCACACATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAATTTTACAATC
* * * *
871341 TTATAAATGATTTTGAA-TCAAAATATTTTTT-ATTCATT-GTTAAAACAAA-CTATAGTTGGAT
193 TTATAAATAATTTT-AAGT--AAATATTTTTTCA-TCATTAGTTAAAACAAATC-ACAATTGCAT
* * * *** * *
871402 GTTTGCATCAGGAAATATGAAGC-AAAACTGATTTGTTGACAAAAAAAGCCCATTTATAGTCACT
253 GTTTGCATCAAGAAACATGAAGCGAAAAC-CATCCATTGACAAAAAAAGCCCATTTACAATCA-T
* * * * * *
871466 CT-TGCATTTAAAAGCCTTATTACTT
316 TTATGCCTTCAAAAGCGTTGTTACTC
871491 GCTTTAAATGATTT
1 GCTTTAAATGATTT
871505 TATATTCTTA
Statistics
Matches: 287, Mismatches: 59, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
340 67 0.23
341 75 0.26
342 131 0.46
343 14 0.05
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (341 bp):
GCTTTAAATGATTTCATAATATTATAAATGACTTTAAATTGAATTTGTTTTTCATTTCTAGTTAA
AATAGATCACAATTCAATGTTTGCATTGGAAAAGTGAAGAAAAAGCCACCCATTAACAAGAAAAG
TCCATTTATAGTCACACATGCCTTCAAAAGCCTAGTTACTCGCTTTAAATAATTTTACAATCTTA
TAAATAATTTTAAGTAAATATTTTTTCATCATTAGTTAAAACAAATCACAATTGCATGTTTGCAT
CAAGAAACATGAAGCGAAAACCATCCATTGACAAAAAAAGCCCATTTACAATCATTTATGCCTTC
AAAAGCGTTGTTACTC
Found at i:897154 original size:16 final size:16
Alignment explanation
Indices: 897133--897163 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
897123 TAAAATTTAC
897133 ATTTTGATTCTTTTGG
1 ATTTTGATTCTTTTGG
*
897149 ATTTTGATTTTTTTG
1 ATTTTGATTCTTTTG
897164 ATATTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.16, T:0.68
Consensus pattern (16 bp):
ATTTTGATTCTTTTGG
Found at i:915359 original size:11 final size:11
Alignment explanation
Indices: 915343--915372 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
915333 GAAAGCTTAA
*
915343 CTCCATCGGAT
1 CTCCATAGGAT
915354 CTCCATAGGAT
1 CTCCATAGGAT
915365 CTCCATAG
1 CTCCATAG
915373 CCATGGCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (11 bp):
CTCCATAGGAT
Found at i:916881 original size:8 final size:8
Alignment explanation
Indices: 916863--916916 Score: 85
Period size: 8 Copynumber: 7.0 Consensus size: 8
916853 CTATTTTTTT
916863 CTTTC-TC
1 CTTTCTTC
916870 CTTTCTTC
1 CTTTCTTC
916878 CTTTCTTC
1 CTTTCTTC
916886 CTTTCTTC
1 CTTTCTTC
916894 CTTTCTT-
1 CTTTCTTC
*
916901 CTTTCTTT
1 CTTTCTTC
916909 CTTTCTTC
1 CTTTCTTC
916917 ATTTGCTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
7 12 0.27
8 32 0.73
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (8 bp):
CTTTCTTC
Found at i:916889 original size:16 final size:16
Alignment explanation
Indices: 916863--916916 Score: 85
Period size: 15 Copynumber: 3.5 Consensus size: 16
916853 CTATTTTTTT
916863 CTTTC-TCCTTTCTTC
1 CTTTCTTCCTTTCTTC
916878 CTTTCTTCCTTTCTTC
1 CTTTCTTCCTTTCTTC
*
916894 CTTTCTT-CTTTCTTT
1 CTTTCTTCCTTTCTTC
916909 CTTTCTTC
1 CTTTCTTC
916917 ATTTGCTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
15 19 0.53
16 17 0.47
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTTCTTCCTTTCTTC
Found at i:916908 original size:4 final size:4
Alignment explanation
Indices: 916860--916915 Score: 62
Period size: 4 Copynumber: 14.5 Consensus size: 4
916850 TTTCTATTTT
* * * *
916860 TTTC TTTC -TCC TTTC TTCC TTTC TTCC TTTC TTCC TTTC -TTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
916906 TTTC TTTC TT
1 TTTC TTTC TT
916916 CATTTGCTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
3 5 0.12
4 37 0.88
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:919261 original size:344 final size:344
Alignment explanation
Indices: 918822--919504 Score: 795
Period size: 344 Copynumber: 2.0 Consensus size: 344
918812 AAACAATTCA
* * * ** * * * *
918822 ATTTAATATCATTTATAAAGTTATAAAATCACTTAAAATGAGTAATTAGGCTTTCGAATGCATAA
1 ATTTAAAATCATTTATAAAGCTATAAAACCACTTAAAATGAACAACTAAGCTTTCAAAGGCATAA
* * *
918887 GTGATTATAAATGGACTACTCTTATCAATGGAT-ATCTTTCACTTCACGTTTCCTAATGCAAACA
66 GTGACTATAAATGGACTACTCTTATCAATGGATGA-CTTTCACATCACATTTCCTAATGCAAACA
* * * *
918951 ACAAATTATAATCTATTTGAATCAAAAATTAAAAAAAATTTAATAT-AAAATTATTTATAAAATT
130 ACAAATTATAATCTATTTGAACCAAAAATGAAAAAAAATTCAAT-TCAAAATCATTTATAAAATT
* * * * * * * *
919015 ATAATACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGTATAAGTGACTATATATGGACTTTTCT
194 ATAAAACCATTTAAAGCGAGTAAAAAAGCTTCCAAAGGCATAAGTGACTATAAAT-GAATTTT-T
* ** * * * * *
919080 T-ACTAATGGATGGTTTTTGCTTCATGTTTTCCAAGGTAAACAATATATTATGATCTGTTTTAAT
257 TAACTAATGGATGGCTTTTGCTTCACATTTCCCAAGGAAAACAACAAATTATGATATGTTTTAAT
919144 -AAATAATGAAAAA-AAATATTTT
322 CAAA-AATGAAAAACAAATATTTT
*
919166 ATTTAAAATCATTTAT-AAGACTATAAAACCATTTAAAATGAACAACTAAGCTTTCAAAGGCATA
1 ATTTAAAATCATTTATAAAG-CTATAAAACCACTTAAAATGAACAACTAAGCTTTCAAAGGCATA
** * * *
919230 AGTGACTATAAATGGA-TTTTTTTGGTCAATGGATGACTTTCACATCACATTTTCTAATGCAAAC
65 AGTGACTATAAATGGACTACTCTT-ATCAATGGATGACTTTCACATCACATTTCCTAATGCAAAC
** * * * *
919294 ATGAAATTATGATTTGTTTGAACCAAAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAGTT
129 AACAAATTATAATCTATTTGAACCAAAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAATT
* * *
919359 ATAAAACCGTTTAAAGCGAGTAAAAAAGCTTCCAAAGGCGTGAGTGACTATAAATGAATTTTTTA
194 ATAAAACCATTTAAAGCGAGTAAAAAAGCTTCCAAAGGCATAAGTGACTATAAATGAATTTTTTA
* ** *
919424 ATTAATGGATGGCTTTTGCTTCACATTTCCCATTGAAAATAACAAATTATGATATGTTTTAATCA
259 ACTAATGGATGGCTTTTGCTTCACATTTCCCAAGGAAAACAACAAATTATGATATGTTTTAATCA
919489 AAAATGAAAAACAAAT
324 AAAATGAAAAACAAAT
919505 TCAAGTTAAC
Statistics
Matches: 281, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
342 2 0.01
343 74 0.26
344 204 0.73
345 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (344 bp):
ATTTAAAATCATTTATAAAGCTATAAAACCACTTAAAATGAACAACTAAGCTTTCAAAGGCATAA
GTGACTATAAATGGACTACTCTTATCAATGGATGACTTTCACATCACATTTCCTAATGCAAACAA
CAAATTATAATCTATTTGAACCAAAAATGAAAAAAAATTCAATTCAAAATCATTTATAAAATTAT
AAAACCATTTAAAGCGAGTAAAAAAGCTTCCAAAGGCATAAGTGACTATAAATGAATTTTTTAAC
TAATGGATGGCTTTTGCTTCACATTTCCCAAGGAAAACAACAAATTATGATATGTTTTAATCAAA
AATGAAAAACAAATATTTT
Found at i:919305 original size:173 final size:168
Alignment explanation
Indices: 918639--920058 Score: 783
Period size: 171 Copynumber: 8.3 Consensus size: 168
918629 TGAAAATTAA
* * * * * * * * * * *
918639 AAAAAAAATTCAATTCAAAATTATTTATCATGTTATATAACCACTCAAACTGAGTAACGAGGCTT
1 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGTAA-TAAGCTT
* * * * * * ** * * * *
918704 TCAAAAGTATTAGTGTCTATAAATAGACTTTTCTTCTGGATGGATGGCTTTCACTTTATGTTTCC
65 TCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGACTTTCACTTCACGTTTTC
* * * * * * *
918769 TAATGCAAATAAGAAATTAAGTTATGCTTTAACAAAAAAATG
130 TAATGCAAA-CATAAATTATGATCTG-TTTGA-ATAAAAATG
* * * * * *
918811 -AAAACAATTCAATTTAATATCATTTATAAAGTTATAAAATCACTTAAAATGAGTAATTAGGCTT
1 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGTAA-TAAGCTT
* * * ** *
918875 TCGAATGCATAAGTGATTATAAATGGACTACTCTTATCAATGGAT-ATCTTTCACTTCACGTTTC
65 TCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGA-CTTTCACTTCACGTTTT
* * * *
918939 CTAATGCAAACAACAAATTATAATCTATTTGAATCAAAAATT
129 CTAATGCAAAC-ATAAATTATGATCTGTTTGAAT-AAAAATG
* * * * *
918981 AAAAAAAATTTAATATAAAATTATTTATAAAATTATAATACCATTTAAAGTGAGTAATAAGGCTT
1 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGTAATAA-GCTT
* * ** ** *
919046 TCAAAGGTATAAGTGACTATATATGGACTTTTCTTA-CTAATGGATGGTTTTTGCTTCATGTTTT
65 TCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATC-AATGGATGACTTTCACTTCACGTTTT
* * * * *
919110 CCAAGGTAAACAATATATTATGATCTGTTTTAATAAATAATG
129 CTAATGCAAAC-ATAAATTATGATCTGTTTGAATAAA-AATG
* * **
919152 AAAAAAAATATTTTATTTAAAATCATTTAT-AAGACTATAAAACCATTTAAAATGAACAACTAAG
1 -AAAAAAA-ATTTAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAATGAGTAA-TAAG
* * * *
919216 CTTTCAAAGGCATAAGTGACTATAAATGGA-TTTTTTTGGTCAATGGATGACTTTCACATCACAT
62 CTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTT-ATCAATGGATGACTTTCACTTCACGT
* *
919280 TTTCTAATGCAAACATGAAATTATGATTTGTTTGAACCAAAAATG
126 TTTCTAATGCAAACAT-AAATTATGATCTGTTTGAA-TAAAAATG
* * * ** *
919325 AAAAAAAATTCAATTCAAAATCATTTATAAAGTTATAAAACCGTTTAAAGCGAGTAAAAAAGCTT
1 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGT-AATAAGCTT
* * * * * * ** * *
919390 CCAAAGGCGTGAGTGACTATAAAT-GAATTTT-TTAATTAATGGATGGCTTTTGCTTCACATTTC
65 TCAAAGGCATAAGTGACTATAAATGGACTTTTCTT-ATCAATGGATGACTTTCACTTCACGTTTT
* * * * * * *
919453 CCATTGAAAATAACAAATTATGATATGTTTTAATCAAAAATG
129 CTAATGCAAA-CATAAATTATGATCTGTTTGAAT-AAAAATG
* * * * * * * * * * * *
919495 AAAAACAAATTCAAGTTAACATTATTTACAAAGTTCTGAAACCACTTAAATTTAATAATGAGGCT
1 AAAAA-AAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGTAAT-AAGCT
* ** * * * * * * * *
919560 TTTAGAA-GCATTGGTGTCTATAAATGGACCTTTCTTGTTATTGAATGGCTTTCACTTCATG-TT
64 TTCA-AAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGACTTTCACTTCACGTTT
* * * *
919623 TCTAAATGGAAACAAGAAATTATGATCTGTTTTAACAAAAAATG
128 TCT-AATGCAAAC-ATAAATTATGATCTGTTTGAA-TAAAAATG
* * * * * ** *
919667 -AAAACAATTCAATTTAATATCATTTATAAGGTCATAAAACCACTTT-AAGCGCA-TAACTAGGC
1 AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCA-TTTAAAATG-AGTAA-TAAGC
** * * * * * *
919729 TTTTGAAGGCATGAGTGACTATAAATAGACTATTCTTGTCAATGGATGGCTTTCACTTCATGTTT
63 TTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGACTTTCACTTCACGTTT
* *
919794 T-TGAGA-GCAAACAATAAATTATGATTTGTTTGAACCAAAAATG
128 TCT-A-ATGCAAAC-ATAAATTATGATCTGTTTGAA-TAAAAATG
** * * ** *** *
919837 AAAAAAAAGGTTCT-ATACAAAATCCTTTAT-AAGATTACAAAACTGTTTAAAGCAAGTAATACG
1 AAAAAAAA--TT-TAATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAAATGAGTAATA-A
* * * * * ** *
919900 GCTTTCGAAGGCATGAGTGACTATAGATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGT
61 GCTTTCAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGACTTTCACTTCACGT
* * * * * *
919965 TTCCTAATGCAAACATCAATTTGTGAGCTGTTTTAACCAAAAAT-
126 TTTCTAATGCAAACAT-AAATTATGATCTGTTTGAA-TAAAAATG
*
920009 AAAAAACAATTCAGCA-TT-AAATCATTTAT-AAGTTTATAAAACCATTTAAA
1 AAAAAA-AATTTA--ATTTAAAATCATTTATAAAG-TTATAAAACCATTTAAA
920059 GCAAGTACAA
Statistics
Matches: 973, Mismatches: 225, Indels: 101
0.75 0.17 0.08
Matches are distributed among these distances:
169 3 0.00
170 201 0.21
171 420 0.43
172 103 0.11
173 238 0.24
174 8 0.01
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (168 bp):
AAAAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAACCATTTAAAATGAGTAATAAGCTTT
CAAAGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATGACTTTCACTTCACGTTTTCT
AATGCAAACATAAATTATGATCTGTTTGAATAAAAATG
Found at i:935773 original size:172 final size:173
Alignment explanation
Indices: 935429--935864 Score: 467
Period size: 172 Copynumber: 2.6 Consensus size: 173
935419 NNNNNNNNNN
** * * * * *
935429 GTTTCCCATTGCAAGCAACAAATTATGTTATGGTTGAACCAAAAATGAAAAAAAAAATCAATTAA
1 GTTTCCCATTGCAAGCAACAAATTATGACATGTTTTAACTAAAAATGAAAAAAAAATTCAATTTA
* * * * * *
935494 AAATCATTTATAAA--TAAAAAACCACTT--AATGCTAGTAATGAGGTTTTCAAAAGCGTTGGTG
66 AAATCATTTATAAAGTTATAAAATCACTTAAAATGC-AGTAATAAGGCTTTCAAAAGCATTAGTG
* * * * *
935555 GCTATAAAAGAACTTTTCTTATAAATGGATGGGTTTTGCTTCAT
130 ACAATAAAAGAACTTTTCTTATAAATGGATGGCTTTCGCCTCAT
* *
935599 GTTTCCCATTGCAAGTAACAAATTATGACATGTTTTAACTACAAATGAAAAAAAAATTCAATTTA
1 GTTTCCCATTGCAAGCAACAAATTATGACATGTTTTAACTAAAAATGAAAAAAAAATTCAATTTA
* * * *
935664 AAACCATTGATAAAGTTATAAAATCACTTAAAATG-AGTAATAAGGCTTTCGAAGGCATTAGTGA
66 AAATCATTTATAAAGTTATAAAATCACTTAAAATGCAGTAATAAGGCTTTCAAAAGCATTAGTGA
* * *
935728 CAATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCCTCAT
131 CAATAAAAGAACTTTTCTTATAAATGGATGGCTTTCGCCTCAT
* * * * * *
935771 GTTTCCTAATGCAAACAACAAATTATGATC-TATTTTAA-TCAAAAAT-ATAAAAAACTT-AATT
1 GTTTCCCATTGCAAGCAACAAATTATGA-CATGTTTTAACT-AAAAATGAAAAAAAAATTCAATT
* *
935832 TAAAATCATTTATAAGGTTATGAAATCACTTAA
64 TAAAATCATTTATAAAGTTATAAAATCACTTAA
935865 TGCCCGTAAC
Statistics
Matches: 221, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
170 101 0.46
171 10 0.05
172 105 0.48
173 1 0.00
174 4 0.02
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.33
Consensus pattern (173 bp):
GTTTCCCATTGCAAGCAACAAATTATGACATGTTTTAACTAAAAATGAAAAAAAAATTCAATTTA
AAATCATTTATAAAGTTATAAAATCACTTAAAATGCAGTAATAAGGCTTTCAAAAGCATTAGTGA
CAATAAAAGAACTTTTCTTATAAATGGATGGCTTTCGCCTCAT
Found at i:935918 original size:170 final size:171
Alignment explanation
Indices: 935558--935955 Score: 423
Period size: 170 Copynumber: 2.3 Consensus size: 171
935548 GTTGGTGGCT
* * * * * **
935558 ATAAAAGAACTTTTCTTATAAATGGATGGGTTTTGCTTCATGTTTCCCATTGCAAGTAACAAATT
1 ATAAATGAACTTTTCTTGTAAATGGATGGCTTTTGCTTCATGTTTCCTAATGCAAACAACAAATT
* *
935623 ATGACATGTTTTAACTACAAATGAAAAAAAAATTCAATTTAAAACCATTGATAAAGTTATAAAAT
66 ATGACATATTTTAACTAAAAATGAAAAAAAAATTCAATTTAAAACCATTGATAAAGTTATAAAAT
* * * *
935688 CACTTAAAATGAGTAATAAGGCTTTCGAAGGCATTAGTGACA
131 CACTT-AAATGAGTAAAAAGCCTTTCAAAGGCATAAGTGACA
* * *
935730 ATAAATGAACTTTTCTTGTCAATGGATGGCTTTCGCCTCATGTTTCCTAATGCAAACAACAAATT
1 ATAAATGAACTTTTCTTGTAAATGGATGGCTTTTGCTTCATGTTTCCTAATGCAAACAACAAATT
* * * * * *
935795 ATGATC-TATTTTAA-TCAAAAAT-ATAAAAAACTT-AATTTAAAATCATTTATAAGGTTATGAA
66 ATGA-CATATTTTAACT-AAAAATGAAAAAAAAATTCAATTTAAAACCATTGATAAAGTTATAAA
* *
935856 ATCACTT-AATGCCCGTAACAAAGCCTTT-AAAGGCATAACG-GACT
129 ATCACTTAAATG--AGTAA-AAAGCCTTTCAAAGGCATAA-GTGACA
* * ** *
935900 ATAAATTAATTTTTCTTGTTGATGGACGGCTTTTGCTTCATGTTTCCTAATGCAAA
1 ATAAATGAACTTTTCTTGTAAATGGATGGCTTTTGCTTCATGTTTCCTAATGCAAA
935956 TAGCAAACTC
Statistics
Matches: 189, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
168 4 0.02
170 95 0.50
171 18 0.10
172 71 0.38
173 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.34
Consensus pattern (171 bp):
ATAAATGAACTTTTCTTGTAAATGGATGGCTTTTGCTTCATGTTTCCTAATGCAAACAACAAATT
ATGACATATTTTAACTAAAAATGAAAAAAAAATTCAATTTAAAACCATTGATAAAGTTATAAAAT
CACTTAAATGAGTAAAAAGCCTTTCAAAGGCATAAGTGACA
Found at i:943167 original size:171 final size:170
Alignment explanation
Indices: 942676--943477 Score: 660
Period size: 171 Copynumber: 4.7 Consensus size: 170
942666 NNNNNNNNNN
* * * * * ** **
942676 GCTTTCAAAGGCATTAGTGACTATGAA-AGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACA
1 GCTTTCGAAGGTATGAGTGACTATAAATAG-ACTTTTCTTATCAATGGATAACTTTTGCTTCATG
* * * * * * *
942740 TTTCCTAATGTAAATAACAAATTATAATCTATTTTAACCAAAAGT-ACACAAAATTCAATTCAAA
65 TTTCCCATTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAAAAC-AAATTCAATTCAAA
* * * * * * *
942804 ATGATTTATAAGATTATAGAACCACTGAAAGCCAGTAACAAA
129 ATTATTTATAAGATTATAAAACCATTTAAAGTCAATAACAAG
* * * ** * **
942846 GCTTTCAAAGGCATGAGTGACTATAAATAAACTTTTCTTATTGATGGATAACTTTTGTTTCACAT
1 GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAACTTTTGCTTCATGT
* * * * *
942911 TTCCCGA-TGCAAACATCAAATTGTAATCTATTTTAACCAGAAATAAAAAAAATATGCAACTT-A
66 TTCCC-ATTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAAAACAAAT-T-CAA-TTCA
* *
942974 AAATTATTTATAAGAGTATAAAACCATTTAAAGTGAATAACAAG
127 AAATTATTTATAAGATTATAAAACCATTTAAAGTCAATAACAAG
* * * *
943018 GCTTTCGAAGGTATGAGTGAGTATAGATAGACTTTTC-TATCAATGGATGACTTTTTCTTCATGT
1 GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAACTTTTGCTTCATGT
* * * * *
943082 TTCTCATTGAAAATAACAAACTT-TGATATGTTTTAACCAAAAATGAAAAGCAAATTCAATTCAA
66 TTCCCATTGCAAACAACAAA-TTATGATCTATTTTAACCAAAAAT-AAAA-CAAATTCAATTCAA
**
943146 AATTATTTATAAGATTATAAAACCATTTAAA-TCAAGTATTAAG
128 AATTATTTATAAGATTATAAAACCATTTAAAGTCAA-TAACAAG
* * *
943189 GCTTTCGAAGGGATAAGTGACTATAAATAGACTTTT-TCTATCAATAGATAACTTTTGCTTAACA
1 GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCT-TATCAATGGATAACTTTTGCTT--CA
* * * * * * * * *
943253 T-TTT-TCAATGCAAACAATAAACTGTGATCTATTGTAACCAAAAATGAAGAA-ACATT-TATGC
63 TGTTTCCCATTGCAAACAACAAATTATGATCTATTTTAACCAAAAAT-AA-AACAAATTCAATTC
* * * * *
943314 TAAAATTATATATAA-AGTTATAAAACTATTTAACGTGAGTAACAAG
126 -AAAATTATTTATAAGA-TTATAAAACCATTTAAAGTCAATAACAAG
* * * * * *
943360 GCTTTTGAAGGTGTGAATGACTATAAATGGACTTTTCTTGTCAATCGATAGA-TTTTGCTTCATG
1 GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGATA-ACTTTTGCTTCATG
* * * *
943424 GTTCCCATTGCAAACAATAAATTATGACCTGTTTTAACCAAAAATAAAACAAAT
65 TTTCCCATTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAAAACAAAT
943478 GATTAAAAAT
Statistics
Matches: 512, Mismatches: 94, Indels: 52
0.78 0.14 0.08
Matches are distributed among these distances:
169 5 0.01
170 110 0.21
171 248 0.48
172 135 0.26
173 11 0.02
174 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (170 bp):
GCTTTCGAAGGTATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAACTTTTGCTTCATGT
TTCCCATTGCAAACAACAAATTATGATCTATTTTAACCAAAAATAAAACAAATTCAATTCAAAAT
TATTTATAAGATTATAAAACCATTTAAAGTCAATAACAAG
Found at i:943423 original size:343 final size:339
Alignment explanation
Indices: 942771--943477 Score: 791
Period size: 343 Copynumber: 2.1 Consensus size: 339
942761 TTATAATCTA
* * *
942771 TTTTAACCAAAAGT-ACACAAAATTCAATTCAAAATGATTTATAAGATTATAGAACCACTGAAAG
1 TTTTAACCAAAAATAAAAC-AAATTCAATTCAAAATGATTTATAAGATTATAAAACCACTGAAAG
* * ** *
942835 CCAGTAACAAAGCTTTCAAAGGCATGAGTGACTATAAATAAACTTTTCTTATTGATGGATAACTT
65 CAAGTAACAAAGCTTTCAAAGGCATAAGTGACTATAAATAAACTTTTCTTATCAATAGATAACTT
* * * * * *
942900 TTGTTTCACATTTCCCGATGCAAACATCAAATTGTAATCTATTTTAACCAGAAATAAAAAAAATA
130 TTGCTTAACATTTCCCAATGCAAACATCAAACTGTAATCTATTGTAACCAAAAATAAAAAAAATA
*
942965 TGCAACTTAAAATTATTTATAAGAGTATAAAACCATTTAAAGTGAATAACAAGGCTTTCGAAGGT
195 TG--ACTTAAAATTATATATAAGAGTATAAAACCATTTAAAGTGAATAACAAGGCTTTCGAAGGT
* * * * * * *
943030 ATGAGTGAGTATAGATAGACTTTTCTATCAATGGATGACTTTTTCTTCATGTTTCTCATTGAAAA
258 ATGAATGACTATAAATAGACTTTTCTATCAATCGATGACTTTTGCTTCATGGTTCCCATTGAAAA
* *
943095 TAACAAACTT-TGATATG
323 CAACAAA-TTATGACATG
* * *
943112 TTTTAACCAAAAATGAAAAGCAAATTCAATTCAAAATTATTTATAAGATTATAAAACCATTTAAA
1 TTTTAACCAAAAAT-AAAA-CAAATTCAATTCAAAATGATTTATAAGATTATAAAACCACTGAAA
* ** * * * *
943177 TCAAGTATTAAGGCTTTCGAAGGGATAAGTGACTATAAATAGACTTTT-TCTATCAATAGATAAC
64 GCAAGTAACAAAGCTTTCAAAGGCATAAGTGACTATAAATAAACTTTTCT-TATCAATAGATAAC
** *
943241 TTTTGCTTAACATTTTTCAATGCAAACAAT-AAACTGTGATCTATTGTAACCAAAAATGAAGAAA
128 TTTTGCTTAACATTTCCCAATGCAAAC-ATCAAACTGTAATCTATTGTAACCAAAAAT-AA-AAA
** * * * *
943305 CATTTATG-C-TAAAATTATATATAA-AGTTATAAAACTATTTAACGTGAGTAACAAGGCTTTTG
190 -AAATATGACTTAAAATTATATATAAGAG-TATAAAACCATTTAAAGTGAATAACAAGGCTTTCG
* * *
943367 AAGGTGTGAATGACTATAAATGGACTTTTCTTGTCAATCGATAGA-TTTTGCTTCATGGTTCCCA
253 AAGGTATGAATGACTATAAATAGACTTTTC-TATCAATCGAT-GACTTTTGCTTCATGGTTCCCA
* * *
943431 TTGCAAACAATAAATTATGACCTG
316 TTGAAAACAACAAATTATGACATG
943455 TTTTAACCAAAAATAAAACAAAT
1 TTTTAACCAAAAATAAAACAAAT
943478 GATTAAAAAT
Statistics
Matches: 305, Mismatches: 49, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
341 20 0.07
342 77 0.25
343 193 0.63
344 7 0.02
345 3 0.01
346 5 0.02
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (339 bp):
TTTTAACCAAAAATAAAACAAATTCAATTCAAAATGATTTATAAGATTATAAAACCACTGAAAGC
AAGTAACAAAGCTTTCAAAGGCATAAGTGACTATAAATAAACTTTTCTTATCAATAGATAACTTT
TGCTTAACATTTCCCAATGCAAACATCAAACTGTAATCTATTGTAACCAAAAATAAAAAAAATAT
GACTTAAAATTATATATAAGAGTATAAAACCATTTAAAGTGAATAACAAGGCTTTCGAAGGTATG
AATGACTATAAATAGACTTTTCTATCAATCGATGACTTTTGCTTCATGGTTCCCATTGAAAACAA
CAAATTATGACATG
Found at i:947318 original size:170 final size:169
Alignment explanation
Indices: 947132--948095 Score: 778
Period size: 171 Copynumber: 5.6 Consensus size: 169
947122 CTTTGAGTGA
*
947132 TTTTATAA-CTTTATAAATAATTTTGAA-TTGAATTTTTTTT-ATTTTTGTTTAAAACATATCAT
1 TTTTATAATC-TTATAAATGATTTT-AAGTTGAATTTTTTTTAATTTTTG-TTAAAACATATCAT
* *
947194 AATTTGTTGTTTGCAATGGGAAACTTGAAGCGAAAGCCTCCCATTGACAAGAAAAGTCCATCTAT
63 AATTTGTTGTTTGCATTGGGAAACTTGAAGCGAAAGCCT-CCATTGACAAGAAAAGTCCATTTAT
* * * *
947259 AGTCACTCATGCCTTTGAAAGCTTTTTTAGTTGTTTTAAATGG
127 AGTCACTCATGCCTTCGAAAGCCTTTTTACTTGTTTTAAATAG
* * * * * *
947302 TCTTATAATCTTATAAATGATTTTAACTTGAATTGTTTTTTAATTTTCAGTGAAAACAGATCACA
1 TTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTAATTTT-TGTTAAAACATATCATA
* * * * * * * *
947367 CTTCGATGTTCGCATTGGGAAACATT-AATCAAAAGTCATCCATTGAAAAGATAAA-TCCATTTA
64 ATTTGTTGTTTGCATTGGGAAAC-TTGAAGCGAAAG-CCTCCATTGACAAGA-AAAGTCCATTTA
* * *** * * *
947430 TTGTCACTCATGCCTTCAAAAGCCTTTTTACTCACTTTGAGTGG
126 TAGTCACTCATGCCTTCGAAAGCCTTTTTACTTGTTTTAAATAG
* * *
947474 TTCTATAA-CTTTATAAATAATTTTGAA-TTGAATTGTTTTCT-ATTTTTAGTTAAAACATATCA
1 TTTTATAATC-TTATAAATGATTTT-AAGTTGAATT-TTTTTTAATTTTT-GTTAAAACATATCA
* * *
947536 TAATTTGATT-TTTGCATTGGGAAA-TGTGAAGCGAAAGCCACTTATTGAGC-AGAAAAGTCCAC
62 TAATTTG-TTGTTTGCATTGGGAAACT-TGAAGCGAAAGCCTC-CATTGA-CAAGAAAAGTCCAT
* ** * *
947598 TTATGGTCACTCATGCCTTCGAAAGCCTAGTTA-TTCTCTTTAAATTG
123 TTATAGTCACTCATGCCTTCGAAAGCCTTTTTACTTGT-TTTAAATAG
* * * *
947645 TTTTATAGTCTTATAAATGGTTTTAAGCT-AATTTGTTTTTCATTATTTGTTAAAACATATCATA
1 TTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTTAATT-TTTGTTAAAACATATCATA
* * * * *
947709 ATTT-TTGTTTGCCTTGGGAAA-TATGATGTGAAAGCCATCGATTGACATTGAAAAGTCCATTTA
64 ATTTGTTGTTTGCATTGGGAAACT-TGAAGCGAAAGCC-TCCATTGACA-AGAAAAGTCCATTTA
* * * *
947772 TAGTCACTGATGCCTTCGAAAGCCTTATTGCTTG-CTTATAATAG
126 TAGTCACTCATGCCTTCGAAAGCCTTTTTACTTGTTTTA-AATAG
* * * * * *
947816 TTTTATAATCTTATAAATGATTTTAAATT-ATTTTTTTTTTCATTTTTTTTAAAACCTATCTTAA
1 TTTTATAATCTTATAAATGATTTTAAGTTGA-ATTTTTTTTAATTTTTGTTAAAACATATCATAA
* * * * * * * *
947880 TTTGTCGTTTGTATTGGCAAACATGAAGCAAAATCCATCCATTTACAAGAAAAGTCGATTTATAG
65 TTTGTTGTTTGCATTGGGAAACTTGAAGCGAAAGCC-TCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
947945 TCACTTATGCATTCAAAAGCTTTTTTACTCGTTTTAAATAG
129 TCACTCATGCCTTCGAAAGCCTTTTTACTTGTTTTAAATAG
* * *
947986 TTTTATAATCTTATAACTGATTTTAAGTTAAATGTTTTTTTTTTAATTTTTGGTTAAAACTTATC
1 TTTTATAATCTTATAAATGATTTTAAGTTGAA----TTTTTTTTAATTTTT-GTTAAAACATATC
* * * * *
948051 ACATTTTGATGTTTGCA-TGAGAAAACATGAAGC-AAAGCCATCCAT
61 ATAATTTGTTGTTTGCATTG-GGAAACTTGAAGCGAAAGCC-TCCAT
948096 CAACNNNNNN
Statistics
Matches: 634, Mismatches: 120, Indels: 76
0.76 0.14 0.09
Matches are distributed among these distances:
169 7 0.01
170 169 0.27
171 251 0.40
172 136 0.21
173 10 0.02
174 27 0.04
175 34 0.05
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (169 bp):
TTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTAATTTTTGTTAAAACATATCATAAT
TTGTTGTTTGCATTGGGAAACTTGAAGCGAAAGCCTCCATTGACAAGAAAAGTCCATTTATAGTC
ACTCATGCCTTCGAAAGCCTTTTTACTTGTTTTAAATAG
Found at i:947438 original size:172 final size:171
Alignment explanation
Indices: 947105--947625 Score: 423
Period size: 172 Copynumber: 3.0 Consensus size: 171
947095 TAATACTTTT
** * * * *
947105 AAAAGCCTCGTTACTCACTTTGAGTGATTTTATAACTTTATAAATAATTTTGAATTGAATT-TTT
1 AAAAGCCTTTTTACTCACTTTAAATGGTTCTATAACTTTATAAATAATTTTGAATTGAATTGTTT
* * * * * * * * * * *
947169 TTTATTTT-TGTTTAAAACATATCATAATTTGTTGTTTGCAATGGGAAAC-TTGAAGCGAAAG-C
66 TCTATTTTCAG-TGAAAACAGATCACAATTCGATGTTCGCATTGGGAAACATT-AATCAAAAGTC
* * *
947231 CTCCCATTGACAAGAAAAGTCCATCTATAGTCACTCATGCCTTT
129 AT-CCATTGAAAAGAAAAGTCCATCTATAGTCACTCATGCCTTC
* * * *** *
947275 GAAAGCTTTTTTAGTTGTTTTAAATGG-TCTTATAA-TCTTATAAATGATTTT-AACTTGAATTG
1 AAAAGCCTTTTTACTCACTTTAAATGGTTC-TATAACT-TTATAAATAATTTTGAA-TTGAATTG
* *
947337 TTTTTTAATTTTCAGTGAAAACAGATCACACTTCGATGTTCGCATTGGGAAACATTAATCAAAAG
63 TTTTCT-ATTTTCAGTGAAAACAGATCACAATTCGATGTTCGCATTGGGAAACATTAATCAAAAG
* *
947402 TCATCCATTGAAAAGATAAA-TCCATTTATTGTCACTCATGCCTTC
127 TCATCCATTGAAAAGA-AAAGTCCATCTATAGTCACTCATGCCTTC
* *
947447 AAAAGCCTTTTTACTCACTTTGAGTGGTTCTATAACTTTATAAATAATTTTGAATTGAATTGTTT
1 AAAAGCCTTTTTACTCACTTTAAATGGTTCTATAACTTTATAAATAATTTTGAATTGAATTGTTT
* * * * * * * ** * * * *
947512 TCTATTTTTAGTTAAAACATATCATAATTTGATTTTTGCATTGGGAAATGTGAAGCGAAAGCCA-
66 TCTATTTTCAGTGAAAACAGATCACAATTCGATGTTCGCATTGGGAAACATTAATCAAAAGTCAT
* ** *
947576 CTTATTGAGCAGAAAAGTCCA-CTTATGGTCACTCATGCCTTC
131 C-CATTGAAAAGAAAAGTCCATC-TATAGTCACTCATGCCTTC
*
947618 GAAAGCCT
1 AAAAGCCT
947626 AGTTATTCTC
Statistics
Matches: 277, Mismatches: 59, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
169 4 0.01
170 45 0.16
171 90 0.32
172 125 0.45
173 13 0.05
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (171 bp):
AAAAGCCTTTTTACTCACTTTAAATGGTTCTATAACTTTATAAATAATTTTGAATTGAATTGTTT
TCTATTTTCAGTGAAAACAGATCACAATTCGATGTTCGCATTGGGAAACATTAATCAAAAGTCAT
CCATTGAAAAGAAAAGTCCATCTATAGTCACTCATGCCTTC
Found at i:947617 original size:171 final size:171
Alignment explanation
Indices: 947013--948095 Score: 733
Period size: 171 Copynumber: 6.3 Consensus size: 171
947003 CCATTCCAGC
* * * * ** **
947013 AAACATATTATAATTTATTGTTTGCAATGCGAAACGTGAAGC-AAATGCCATCCATCAACAAGAA
1 AAACATATCATAATTTGTTGTTTGCATTGGGAAATATGAAGCGAAA-GCCATCCATTGAC-AGAA
** * * * * ** * * * * *
947077 AAGTCCATTTATAAACATTAATACTTTTAAAAGCCTCGTTACTCACTTTGAGTGATTTTATAACT
64 AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTCTATAACT
947142 -TTATAAATAATTTTGAA-TTGAATT-TTTTTT-ATTTTTGTTTA
129 CTTATAAATAATTTT-AACTTGAATTGTTTTTTAATTTTTG-TTA
*
947183 AAACATATCATAATTTGTTGTTTGCAATGGGAAACT-TGAAGCGAAAGCC-TCCCATTGACAAGA
1 AAACATATCATAATTTGTTGTTTGCATTGGGAAA-TATGAAGCGAAAGCCAT-CCATTGAC-AGA
* * * * * ***
947246 AAAGTCCATCTATAGTCACTCATGCCTTTGAAAGCTTTTTTAGTTGTTTTAAATGG-TCTTATAA
63 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTC-TATAA
* * *
947310 -TCTTATAAATGATTTTAACTTGAATTGTTTTTTAATTTTCAGTGA
127 CTCTTATAAATAATTTTAACTTGAATTGTTTTTTAATTTT-TGTTA
* * * * * * * * * * * *
947355 AAACAGATCACACTTCGATGTTCGCATTGGGAAACATTAATCAAAAGTCATCCATTGAAAAGATA
1 AAACATATCATAATTTGTTGTTTGCATTGGGAAATATGAAGCGAAAGCCATCCATTG-ACAGA-A
* * * * *
947420 AA-TCCATTTATTGTCACTCATGCCTTCAAAAGCCTTTTTACTCACTTTGAGTGGTTCTATAACT
64 AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTCTATAACT
*
947484 -TTATAAATAATTTTGAA-TTGAATTGTTTTCT-ATTTTTAGTTA
129 CTTATAAATAATTTT-AACTTGAATTGTTTTTTAATTTTT-GTTA
* *
947526 AAACATATCATAATTTGATT-TTTGCATTGGGAAATGTGAAGCGAAAGCCA-CTTATTGAGCAGA
1 AAACATATCATAATTTG-TTGTTTGCATTGGGAAATATGAAGCGAAAGCCATC-CATTGA-CAGA
* * * * * * * *
947589 AAAGTCCACTTATGGTCACTCATGCCTTCGAAAGCCTAGTTATTCTCTTTAAATTGTTTTAT-AG
63 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTCTATAAC
** *
947653 TCTTATAAATGGTTTTAAGC-T-AATT-TGTTTTTCATTATTTGTTA
128 TCTTATAAATAATTTTAA-CTTGAATTGT-TTTTTAATT-TTTGTTA
* * * *
947697 AAACATATCATAATTT-TTGTTTGCCTTGGGAAATATGATGTGAAAGCCATCGATTGACATTGAA
1 AAACATATCATAATTTGTTGTTTGCATTGGGAAATATGAAGCGAAAGCCATCCATTGACA--GAA
* * * ** * *
947761 AAGTCCATTTATAGTCACTGATGCCTTCGAAAGCCTTATTGCTTGC-TTATAATAGTTTTATAA-
64 AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTA-AATGGTTCTATAAC
* * * * * *
947824 TCTTATAAATGATTTTAAATT-ATTTTTTTTTTCATTTTTTTTA
128 TCTTATAAATAATTTTAACTTGAATTGTTTTTTAATTTTTGTTA
* * * * * * * * *
947867 AAACCTATCTTAATTTGTCGTTTGTATTGGCAAACATGAAGCAAAATCCATCCATTTACAAGAAA
1 AAACATATCATAATTTGTTGTTTGCATTGGGAAATATGAAGCGAAAGCCATCCATTGAC-AGAAA
* * * * * * ** * *
947932 AGTCGATTTATAGTCACTTATGCATTCAAAAGCTTTTTTACTCGTTTTAAATAGTTTTATAA-TC
65 AGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTCTATAACTC
* * * * *
947996 TTATAACTGATTTTAAGTTAAATGTTTTTTTTTTAATTTTTGGTTA
130 TTATAAATAATTTTAACTTGAA---TTGTTTTTTAATTTTT-GTTA
* * * * * *
948042 AAACTTATCACATTTTGATGTTTGCA-TGAGAAAACATGAAGC-AAAGCCATCCAT
1 AAACATATCATAATTTGTTGTTTGCATTG-GGAAATATGAAGCGAAAGCCATCCAT
948096 CAACNNNNNN
Statistics
Matches: 729, Mismatches: 140, Indels: 84
0.76 0.15 0.09
Matches are distributed among these distances:
169 10 0.01
170 256 0.35
171 259 0.36
172 131 0.18
173 11 0.02
174 28 0.04
175 34 0.05
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (171 bp):
AAACATATCATAATTTGTTGTTTGCATTGGGAAATATGAAGCGAAAGCCATCCATTGACAGAAAA
GTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAATGGTTCTATAACTCT
TATAAATAATTTTAACTTGAATTGTTTTTTAATTTTTGTTA
Found at i:949052 original size:175 final size:159
Alignment explanation
Indices: 948813--949150 Score: 288
Period size: 174 Copynumber: 2.0 Consensus size: 159
948803 TTTAAATTGA
* * * *
948813 TTTTTTTTTCATTGTTGTTTAAAACCTATCATAATTTGTTGTTTGTATTGGCAAACAAGAAGCAA
1 TTTTTTTTTCATTGTTGGTTAAAACCTATCACAATTTGATGTTTGTATTGGAAAACAAGAAGC-A
* ** * * * * *
948878 AATCCATCCATTTACAAGAAAAGTCGATTTATAGTCT-CTTATGCGTTCAAAAGCTTTT-TTACT
65 AAGCCATCCATCAACAAAAAAAGTCCATTTATAGT-TACTCATCCCTTCAAAAG-TTTTGTTACT
* *
948941 CGTTTTAAATGGTTTTATAATCTTATAANNNNNNNNNNNNNNNATGT
128 AGCTTTAAATGGTTTTATAATCTTATAA---------------ATGT
* * * * *
948988 TTTTTTTTTCATTTTTGGTTAAAACTTATCACATTTTGATGTTTGTA-TGATAAAACATGAAGCA
1 TTTTTTTTTCATTGTTGGTTAAAACCTATCACAATTTGATGTTTGTATTG-GAAAACAAGAAGCA
*
949052 AAGCCATCCATCAACAAAAAAAGTCCATTTATTGTTACTCATCCCTTCAAAAGTTTTGTTACTAG
65 AAGCCATCCATCAACAAAAAAAGTCCATTTATAGTTACTCATCCCTTCAAAAGTTTTGTTACTAG
*
949117 CTTTAAGTGGTTTTATAATCTTATAAAT-T
130 CTTTAAATGGTTTTATAATCTTATAAATGT
949146 TTTTT
1 TTTTT
949151 AAATTGAATC
Statistics
Matches: 139, Mismatches: 21, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
158 6 0.04
159 2 0.01
173 5 0.04
174 75 0.54
175 51 0.37
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.42
Consensus pattern (159 bp):
TTTTTTTTTCATTGTTGGTTAAAACCTATCACAATTTGATGTTTGTATTGGAAAACAAGAAGCAA
AGCCATCCATCAACAAAAAAAGTCCATTTATAGTTACTCATCCCTTCAAAAGTTTTGTTACTAGC
TTTAAATGGTTTTATAATCTTATAAATGT
Found at i:954178 original size:172 final size:170
Alignment explanation
Indices: 953840--954208 Score: 397
Period size: 172 Copynumber: 2.2 Consensus size: 170
953830 TTTTACAATC
* * * * *
953840 TTATAAATGATTTTAAGTTGAA--TTTTCTTCCTTTTTAGTTA-AA-ATAGATCATAATTTGTTA
1 TTATAAATGATTTTAAATTGAATTTTTTTTTCATTTGTACTTAGAACAT-G-TCATAATTTGTTA
* * * * * * * *
953901 TTTTCATTAGTAAACATGAGGCAAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTAA
64 CTTGCAATAGAAAACATGAAGCAAAACCCATCCATTGACAAGAAAAGTTTATTTATAGCCACCAA
* * * * ** *
953966 TGCCTTCGAAAGCCTTATTAGTCGTTTTAGGTGATTTTATAACT
129 CGCCTTCGAAAGCCTCATTACTAGCATTAAGTGATTTTAT-A-T
* *
954010 TTATCAATGATTTTAAATTGCATTTTTTTTTCATTTGTACTTAGAACATGTCATAATTTGTTACT
1 TTATAAATGATTTTAAATTGAATTTTTTTTTCATTTGTACTTAGAACATGTCATAATTTGTTACT
* * *
954075 TGCAATGGAAAACATGAAGCAAAACCCATCCATTTACAAGAAAAGTTCT-TTTGTAGCCACCAAC
66 TGCAATAGAAAACATGAAGCAAAACCCATCCATTGACAAGAAAAGTT-TATTTATAGCCACCAAC
* * *
954139 GCTTTTGAAAGCCTCATTACTAGCATTAAGTGGTTTTATAT
130 GCCTTCGAAAGCCTCATTACTAGCATTAAGTGATTTTATAT
*
954180 TTATAAATGATTTTTAATTGAATTTTTTT
1 TTATAAATGATTTTAAATTGAATTTTTTT
954209 CATTTTTGGT
Statistics
Matches: 163, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
170 46 0.28
171 1 0.01
172 110 0.67
173 4 0.02
174 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (170 bp):
TTATAAATGATTTTAAATTGAATTTTTTTTTCATTTGTACTTAGAACATGTCATAATTTGTTACT
TGCAATAGAAAACATGAAGCAAAACCCATCCATTGACAAGAAAAGTTTATTTATAGCCACCAACG
CCTTCGAAAGCCTCATTACTAGCATTAAGTGATTTTATAT
Found at i:954522 original size:169 final size:170
Alignment explanation
Indices: 954311--954639 Score: 400
Period size: 170 Copynumber: 1.9 Consensus size: 170
954301 TCATGTCTTT
* * **
954311 GAAAGCCTTGTTACTTGCTTTAAATAGTTTTATAATCTTATAAATGATTTTAA-GTTGAATTCTT
1 GAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAAACTTATAAATGA-TTTAATGCAGAATTCTT
* *
954375 TATCATATTTTT-CTAAAACATAT-CAAAATTTGATATTTACATT-GAAAAACATGAAGCAAAAG
65 TATCA-ATTTTTAATAAAACAGATCCAAAA-TTGATATTTACATTAG-AAAACATGAAGC-AAAG
*
954437 G-CATCCATTGAAAAGAAAAGTCCATTTATAGTCTCCATACCTTC
126 GCCATCCATTGAAAAGAAAAGTCCATCTATAGTCTCCATACCTTC
* * *
954481 GAAAGTCTTG-TACTCGCTTTAAATGGTTTTATAAACTTATAAATGATTTAATGCAGAATTTTTT
1 GAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAAACTTATAAATGATTTAATGCAGAATTCTTT
* * * * * * *
954545 TTTAATTTTTGAATAAAACAGCTCCCAAATTGATGTTTGCATTAGGAAACATGAAGCAAAGGCCA
66 ATCAATTTTT-AATAAAACAGATCCAAAATTGATATTTACATTAGAAAACATGAAGCAAAGGCCA
*
954610 TCCATTGACAAGAAAAGTCCATCTATAGTC
130 TCCATTGAAAAGAAAAGTCCATCTATAGTC
954640 ACTCATGCCT
Statistics
Matches: 135, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
168 11 0.08
169 49 0.36
170 70 0.52
171 5 0.04
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (170 bp):
GAAAGCCTTGTTACTCGCTTTAAATAGTTTTATAAACTTATAAATGATTTAATGCAGAATTCTTT
ATCAATTTTTAATAAAACAGATCCAAAATTGATATTTACATTAGAAAACATGAAGCAAAGGCCAT
CCATTGAAAAGAAAAGTCCATCTATAGTCTCCATACCTTC
Found at i:973352 original size:20 final size:19
Alignment explanation
Indices: 973319--973360 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
973309 AAAAGCTTAA
* *
973319 TTATTCTTTTTAAATGGTT
1 TTATTCTTTATAAATGATT
973338 TTATATCTTTATAAATGATT
1 TTAT-TCTTTATAAATGATT
973358 TTA
1 TTA
973361 GGCGAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.60
Consensus pattern (19 bp):
TTATTCTTTATAAATGATT
Found at i:1008117 original size:10 final size:10
Alignment explanation
Indices: 1008102--1008126 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1008092 AATCACTCAT
1008102 GCCTTTGGAA
1 GCCTTTGGAA
1008112 GCCTTTGGAA
1 GCCTTTGGAA
1008122 GCCTT
1 GCCTT
1008127 GTAACTCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.24, G:0.28, T:0.32
Consensus pattern (10 bp):
GCCTTTGGAA
Found at i:1032823 original size:21 final size:22
Alignment explanation
Indices: 1032799--1032844 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
1032789 GAGGCTTTCG
1032799 CTTGGT-AATAAATGGACTTTT-
1 CTTGGTCAATAAAT-GACTTTTA
*
1032820 CTT-GTCAATAGATGACTTTTA
1 CTTGGTCAATAAATGACTTTTA
1032841 CTTG
1 CTTG
1032845 ATGTTTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (22 bp):
CTTGGTCAATAAATGACTTTTA
Found at i:1037494 original size:36 final size:36
Alignment explanation
Indices: 1037412--1037543 Score: 187
Period size: 36 Copynumber: 3.7 Consensus size: 36
1037402 NNNNNTGTTT
* * *
1037412 AATTTAATCAATGAGGCCTAATAACTTAATTGAAC-
1 AATTTAATCAATTAGGCCTAATAACTTGATTAAACA
*
1037447 AATTTGATCAATTAGG-CTAAATAACTTGATTAAACA
1 AATTTAATCAATTAGGCCT-AATAACTTGATTAAACA
* *
1037483 AATTTAGTCAATTAGGCCTAATAACTTGATGAAACA
1 AATTTAATCAATTAGGCCTAATAACTTGATTAAACA
1037519 AATTTAATCAATTAGGCCTAATAAC
1 AATTTAATCAATTAGGCCTAATAAC
1037544 NNNNNNNNNN
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
34 2 0.02
35 28 0.33
36 54 0.63
37 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AATTTAATCAATTAGGCCTAATAACTTGATTAAACA
Found at i:1045675 original size:25 final size:24
Alignment explanation
Indices: 1045639--1045694 Score: 85
Period size: 25 Copynumber: 2.3 Consensus size: 24
1045629 CTCATGGTCT
*
1045639 GTGATATATGTGGCAAGGCCACGA
1 GTGATATATGTGGCAAGGCCACAA
*
1045663 GTAGATATATGTGGCTAGGCCACAA
1 GT-GATATATGTGGCAAGGCCACAA
1045688 GTGATAT
1 GTGATAT
1045695 CCGTGNNNNN
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.25
Consensus pattern (24 bp):
GTGATATATGTGGCAAGGCCACAA
Found at i:1047360 original size:21 final size:21
Alignment explanation
Indices: 1047336--1047375 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1047326 TTAGCCTGGT
1047336 AATAAATGGACTTTT-CTTGTC
1 AATAAATGG-CTTTTACTTGTC
*
1047357 AATAGATGGCTTTTACTTG
1 AATAAATGGCTTTTACTTG
1047376 ATGTTTCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (21 bp):
AATAAATGGCTTTTACTTGTC
Found at i:1056467 original size:32 final size:34
Alignment explanation
Indices: 1056429--1056536 Score: 103
Period size: 36 Copynumber: 3.1 Consensus size: 34
1056419 CACTTGATTA
*
1056429 AAATTGTTTAATTAAGTT-GT-GCCTAATTCATT
1 AAATTGTTTAATCAAGTTAGTAGCCTAATTCATT
* * *
1056461 AAATTGTTTCATCAAGTTATTAGGCCTAATTGATT
1 AAATTGTTTAATCAAGTTAGTA-GCCTAATTCATT
* * * *
1056496 AAATTTGTTTCATCAAGGTATTAGGCCTAATTGATT
1 AAA-TTGTTTAATCAAGTTAGTA-GCCTAATTCATT
1056532 AAATT
1 AAATT
1056537 TNNNNNNNNN
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
32 16 0.24
33 1 0.01
35 16 0.24
36 34 0.51
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (34 bp):
AAATTGTTTAATCAAGTTAGTAGCCTAATTCATT
Found at i:1056511 original size:36 final size:36
Alignment explanation
Indices: 1056449--1056537 Score: 153
Period size: 36 Copynumber: 2.5 Consensus size: 36
1056439 ATTAAGTTGT
* *
1056449 GCCTAATTCATTAAA-TTGTTTCATCAAGTTATTAG
1 GCCTAATTGATTAAATTTGTTTCATCAAGGTATTAG
1056484 GCCTAATTGATTAAATTTGTTTCATCAAGGTATTAG
1 GCCTAATTGATTAAATTTGTTTCATCAAGGTATTAG
1056520 GCCTAATTGATTAAATTT
1 GCCTAATTGATTAAATTT
1056538 NNNNNNNNNN
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 14 0.27
36 37 0.73
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.43
Consensus pattern (36 bp):
GCCTAATTGATTAAATTTGTTTCATCAAGGTATTAG
Found at i:1083966 original size:32 final size:34
Alignment explanation
Indices: 1083929--1084066 Score: 113
Period size: 36 Copynumber: 4.0 Consensus size: 34
1083919 AACTGTCTAA
*
1083929 TTAAG-TTGTGCCTAATTCATTAAA-TTGTTTAC
1 TTAAGTTTGGGCCTAATTCATTAAATTTGTTTAC
1083961 TTAAGTTATTGGGCCTAATTCATTAAATTTGTTTAAC
1 TTAAG-T-TTGGGCCTAATTCATTAAATTTGTTT-AC
* * *
1083998 -CAAGTTATTGGGCCTAATTGATTAAATTTGTTTAA
1 TTAAG-T-TTGGGCCTAATTCATTAAATTTGTTTAC
* * * *
1084033 TTACGTTATTGGGCTTAATTGATCAAA-TTGTTTA
1 TTAAG-T-TTGGGCCTAATTCATTAAATTTGTTTA
1084067 ATTNNNNNNN
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
32 5 0.05
35 26 0.28
36 59 0.64
37 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (34 bp):
TTAAGTTTGGGCCTAATTCATTAAATTTGTTTAC
Found at i:1083979 original size:35 final size:35
Alignment explanation
Indices: 1083938--1084202 Score: 233
Period size: 35 Copynumber: 7.5 Consensus size: 35
1083928 ATTAAGTTGT
* *
1083938 GCCTAATTCATTAAATTGTTTACTTAAGTTATTGG
1 GCCTAATTGATTAAATTGTTTAATTAAGTTATTGG
* **
1083973 GCCTAATTCATTAAATTTGTTTAACCAAGTTATTGG
1 GCCTAATTGATTAAA-TTGTTTAATTAAGTTATTGG
*
1084009 GCCTAATTGATTAAATTTGTTTAATTACGTTATTGG
1 GCCTAATTGATTAAA-TTGTTTAATTAAGTTATTGG
* * **********
1084045 GCTTAATTGATCAAATTGTTTAATTNNNNNNNNNN
1 GCCTAATTGATTAAATTGTTTAATTAAGTTATTGG
* **** *
1084080 GCCTCATTGATTAAATTAAACAATTATGTTATTGG
1 GCCTAATTGATTAAATTGTTTAATTAAGTTATTGG
* * * *
1084115 ACCTAATTGATTAAATTTATTTAATCAAGTTATTGA
1 GCCTAATTGATTAAA-TTGTTTAATTAAGTTATTGG
* *
1084151 GCCTAATTAATTAAATTATTTAATTAAGTTATTGG
1 GCCTAATTGATTAAATTGTTTAATTAAGTTATTGG
1084186 GCCTAATTGATTAAATT
1 GCCTAATTGATTAAATT
1084203 AANNNNNNNN
Statistics
Matches: 179, Mismatches: 49, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
35 90 0.50
36 89 0.50
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.43
Consensus pattern (35 bp):
GCCTAATTGATTAAATTGTTTAATTAAGTTATTGG
Found at i:1084022 original size:71 final size:71
Alignment explanation
Indices: 1083938--1084202 Score: 253
Period size: 71 Copynumber: 3.7 Consensus size: 71
1083928 ATTAAGTTGT
* * * * *
1083938 GCCTAATTCATTAAATTGTTTACTTAAGTTATTGGGCCTAATTCATTAAATTTGTTTAACCAAGT
1 GCCTAATTGATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAATCAAGT
*
1084003 TATTGG
66 TATTGA
* * * * ****
1084009 GCCTAATTGATTAAATTTGTTTAATTACGTTATTGGGCTTAATTGATCAAA-TTGTTTAATTNNN
1 GCCTAATTGATTAAA-TTATTTAATTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAATCAAG
*******
1084073 NNNNNNN
65 TTATTGA
* *** * * *
1084080 GCCTCATTGATTAAATTAAACAATTATGTTATTGGACCTAATTGATTAAATTTATTTAATCAAGT
1 GCCTAATTGATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAATCAAGT
1084145 TATTGA
66 TATTGA
*
1084151 GCCTAATTAATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAATT
1 GCCTAATTGATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAATT
1084203 AANNNNNNNN
Statistics
Matches: 146, Mismatches: 46, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
70 27 0.18
71 89 0.61
72 30 0.21
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.43
Consensus pattern (71 bp):
GCCTAATTGATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAATTTGTTTAATCAAGT
TATTGA
Found at i:1086062 original size:35 final size:34
Alignment explanation
Indices: 1085983--1086103 Score: 143
Period size: 35 Copynumber: 3.4 Consensus size: 34
1085973 NNNNNTAAAC
* *
1085983 AATTAAGTTATTGGACCTAATTGATTAAATTTGTTT
1 AATTAAGTTATTGG-CCTAATTAATTAAA-TTATTT
*
1086019 AATCAAGTTATTGAGCCTAATTAATTAAATTATTT
1 AATTAAGTTATTG-GCCTAATTAATTAAATTATTT
* **
1086054 AATTAAGTTATTGGGTCTAATTAATTAAATTAAAT
1 AATTAAGTTATT-GGCCTAATTAATTAAATTATTT
1086089 AATTAAGTTAATTGG
1 AATTAAGTT-ATTGG
1086104 GNNNNNNNNN
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
35 45 0.60
36 29 0.39
37 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (34 bp):
AATTAAGTTATTGGCCTAATTAATTAAATTATTT
Found at i:1096012 original size:36 final size:36
Alignment explanation
Indices: 1095972--1096065 Score: 118
Period size: 35 Copynumber: 2.6 Consensus size: 36
1095962 NNNNNNNNNN
* *
1095972 TATTGGGCCTAATTGATTAAATTTGTTTGATTAAGT
1 TATTGGGCCTAATTGATTAAATTTGTTTAATAAAGT
* * * *
1096008 TATTGGACTTAATCGATCAAA-TTGTTTAATAAAGT
1 TATTGGGCCTAATTGATTAAATTTGTTTAATAAAGT
*
1096043 TATTGGGCCTCATTGATTAAATT
1 TATTGGGCCTAATTGATTAAATT
1096066 AAACAATTAA
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 28 0.61
36 18 0.39
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.44
Consensus pattern (36 bp):
TATTGGGCCTAATTGATTAAATTTGTTTAATAAAGT
Found at i:1128200 original size:20 final size:20
Alignment explanation
Indices: 1128175--1128213 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1128165 AACTACTCAC
* *
1128175 TTTAAATGGTTTTATAATTT
1 TTTAAATGATTTTAAAATTT
1128195 TTTAAATGATTTTAAAATT
1 TTTAAATGATTTTAAAATT
1128214 GATTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTAAATGATTTTAAAATTT
Found at i:1143265 original size:16 final size:16
Alignment explanation
Indices: 1143244--1143275 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1143234 TAAAACAAGT
*
1143244 AATTAGGCTTTCAAAG
1 AATTAGACTTTCAAAG
1143260 AATTAGACTTTCAAAG
1 AATTAGACTTTCAAAG
1143276 GCATGAGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (16 bp):
AATTAGACTTTCAAAG
Found at i:1147058 original size:171 final size:162
Alignment explanation
Indices: 1146818--1147145 Score: 340
Period size: 171 Copynumber: 2.0 Consensus size: 162
1146808 GTAAAAAAAT
* * * *
1146818 ATCATAATTTGATGTTTGCATTAGAAAACATGAAAAGGAAGCCATCGATTAACTAGAAAAGCCCA
1 ATCATAATTGGATGTTTGCATTAGAAAACATGAAAAGGAAACCATCCATTAACTAGAAAAGCACA
**
1146883 TTTATAGTCAC-CTATGCCTTCGAAAGCATAGTTGTTCACTTTAAATGGTTTTATAATCTTATAA
66 TTTATAGTCACTC-ATGCCTTCGAAAGCATAGTTACTCACTTTAAATGGTTTTATAATCTTATAA
* *
1146947 ATGTTTTTAAA-TTGAANNNNNNNNNNTGTTTATTTTAAATAG
130 ATGATTCTAAAGTTGAA----------TGTTTATTTTAAATAG
** * * *
1146989 ATCATAATTGGATGTTTGCATCTAG-AAACATGAAGTGTAAACCATCCATTGAC-ATGAAAAGTA
1 ATCATAATTGGATGTTTGCAT-TAGAAAACATGAAAAGGAAACCATCCATTAACTA-GAAAAGCA
* ** *
1147052 CATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCGGTTTAAATGGTTTTATAATCTTGTA
64 CATTTATAGTCACTCATGCCTTCGAAAGCATAGTTACTCACTTTAAATGGTTTTATAATCTTATA
*
1147117 AATGATTCTAAAGTTGAATTTTTTATTTT
129 AATGATTCTAAAGTTGAA-TGTTTATTTT
1147146 TAGTTAAAAC
Statistics
Matches: 134, Mismatches: 19, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
163 9 0.07
170 1 0.01
171 115 0.86
172 9 0.07
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.37
Consensus pattern (162 bp):
ATCATAATTGGATGTTTGCATTAGAAAACATGAAAAGGAAACCATCCATTAACTAGAAAAGCACA
TTTATAGTCACTCATGCCTTCGAAAGCATAGTTACTCACTTTAAATGGTTTTATAATCTTATAAA
TGATTCTAAAGTTGAATGTTTATTTTAAATAG
Found at i:1192627 original size:18 final size:18
Alignment explanation
Indices: 1192593--1192630 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1192583 AAAAAAATTC
*
1192593 AATTTAAAATCATTTTAA
1 AATTTAAAACCATTTTAA
1192611 AATTATAAAACCA-TTTAA
1 AATT-TAAAACCATTTTAA
1192629 AA
1 AA
1192631 CGAGCAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTTAAAACCATTTTAA
Found at i:1211266 original size:20 final size:20
Alignment explanation
Indices: 1211241--1211278 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
1211231 TCACTTTAAC
1211241 TTTATAACTTTATAAATGGA
1 TTTATAACTTTATAAATGGA
1211261 TTTATAACTTTATAAATG
1 TTTATAACTTTATAAATG
1211279 ATTCTAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (20 bp):
TTTATAACTTTATAAATGGA
Found at i:1279745 original size:343 final size:338
Alignment explanation
Indices: 1278948--1279748 Score: 771
Period size: 343 Copynumber: 2.4 Consensus size: 338
1278938 ACCCAAAATG
* * * * * * *
1278948 AAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACTACTTCAAGCGAGTAACTAGGCTTT
1 AAAAAAATTCAATATAAAATCATGTATAAGATTATAAAACCATTTCAAGTGAGTAATTAGGCTTT
* * *
1279013 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTT-GCTTCATGTTTCTT
66 TGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCACGTTTCTT
* * * * * * *
1279077 GTTCCAGAAATCAGATTATGATCTATTTTAACTAAAAATGAGAAAAAAGTAATTTAAAATCATTT
131 GATCCAAAAAACAAATTATGATCTATTTTAACCAAAAATGACAAAAAAGTAATGTAAAATCATTT
*
1279142 ATAAGATTATGAAACCACTTAAATCAAGTAACTAGACTTTCAAACATGAGTGAATATTAATGGAC
196 ATAAGATTATGAAACCACTTAAATCAAGTAACTAGACTTTCAAACATGAGTGAATATTAATGAAC
* * ** ** **
1279207 TATTCTTGTCAATGGATGGATTTTGCTCGTGTTTCCCAGTGGAACCATCAATTTGCGATCTGTTT
261 TATTCTTGTCAATGGATGGATTTCGCTCATGTTTCCCAGTCCAAAAATCAATTTGCGATCTACTT
1279272 TCACCTAAAATAA
326 TCACCTAAAATAA
** * * *
1279285 AAAAAACATTCAACCTAAAACCA-GTTATAAGATTATAAAATCATTTCAAGCT-AGTACTTAGGC
1 AAAAAA-ATTCAATATAAAATCATG-TATAAGATTATAAAACCATTTCAAG-TGAGTAATTAGGC
** * * * * * *
1279348 TCGTAAAGGGATTAGTGACTATAAATGGACTATTT-TTGACAACGGATGGCTTTCGCTTCACGTT
63 TTTTGAAGGCATAAGTGACTATAAATGGACT-TTTCTTGTCAATGGATAGCTTTCGCTTCACGTT
* * *
1279412 TCCTT-ATGCAAAACAACAAATTATGATCTATTTTAACCAAAAATG-CAAACAATTCAATGTAAA
127 T-CTTGATCCAAAA-AACAAATTATGATCTATTTTAACCAAAAATGACAAAAAAGT-AATGTAAA
* * * * * * * ** *
1279475 ATTATTTATAAGATTATTAAACCATTTAAGGTGAA-TAACTTGATTTTCGAAGGTATGAGTGACT
189 ATCATTTATAAGATTATGAAACCACTTAA-ATCAAGTAACTAGACTTTC-AA-ACATGAGTGAAT
* * * * * *
1279539 -TCTAATGAATTTTTTTTGTCAATGGAT-GACTTTCGCTTCATGTTTTCCATTCCAAAAATTAAT
251 AT-TAATGAACTATTCTTGTCAATGGATGGA-TTTCGC-TCATGTTTCCCAGTCCAAAAATCAA-
*
1279602 TTTGC-ATTTACTTT-AGCC-AAGAATGAA
312 TTTGCGATCTACTTTCA-CCTAA-AAT-AA
* * * *
1279629 AAAAAAATTCAATATAAATTCATGTACAAGATTATGAAACCATTTAAAGTGAGTAATTAGGCTTT
1 AAAAAAATTCAATATAAAATCATGTATAAGATTATAAAACCATTTCAAGTGAGTAATTAGGCTTT
* * *
1279694 TGAAGGTATAAGTGACTATAAATCGACTTTTCTTGTTAATGGATAGCTTTCGCTT
66 TGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTT
1279749 TAAATTTTCC
Statistics
Matches: 367, Mismatches: 76, Indels: 36
0.77 0.16 0.08
Matches are distributed among these distances:
337 6 0.02
338 83 0.23
339 24 0.07
340 75 0.20
341 8 0.02
342 42 0.11
343 115 0.31
344 14 0.04
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (338 bp):
AAAAAAATTCAATATAAAATCATGTATAAGATTATAAAACCATTTCAAGTGAGTAATTAGGCTTT
TGAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCACGTTTCTT
GATCCAAAAAACAAATTATGATCTATTTTAACCAAAAATGACAAAAAAGTAATGTAAAATCATTT
ATAAGATTATGAAACCACTTAAATCAAGTAACTAGACTTTCAAACATGAGTGAATATTAATGAAC
TATTCTTGTCAATGGATGGATTTCGCTCATGTTTCCCAGTCCAAAAATCAATTTGCGATCTACTT
TCACCTAAAATAA
Found at i:1280522 original size:170 final size:170
Alignment explanation
Indices: 1280217--1280545 Score: 419
Period size: 170 Copynumber: 1.9 Consensus size: 170
1280207 AAAACTGGAC
* * * *
1280217 TTTTCTTATCAATGGATATCTTTCACTTCATGTTTCCCAATGCAAACATCAATTTAAAATCTGTT
1 TTTTCTTAACAATGGATATCTTTCACCTCATGTTTCCCAATGCAAACATCAAATTAAAATCTATT
* * ** * ** **
1280282 TTAACCCAAAATAAAAACAATTCAATTTAAAATCTTTTATAAGATTATAAATCCATTTCGAGTGA
66 TTAACCAAAAATAAAAACAATTCAATCTAAAATCCCTTATAAGATTATAAAACCATTTAAAGCAA
1280347 GTAACTAAGCGTTTT-AAGGCATGAGTGACAACAAATGGCT
131 GTAACTAAGC-TTTTGAAGGCATGAGTGACAACAAATGGCT
**
1280387 TTTTCTTAACAATGGATGA-CTTTCACCTCATGTTTCCCAATGCAAACATCAAATTATGATCTAT
1 TTTTCTTAACAATGGAT-ATCTTTCACCTCATGTTTCCCAATGCAAACATCAAATTAAAATCTAT
** * * * *
1280451 TTTAACCAAAAATTGAAATAGTTGAATCTAAAATCCCTTATAAGATTATAAAACTATTTAAAGCA
65 TTTAACCAAAAATAAAAACAATTCAATCTAAAATCCCTTATAAGATTATAAAACCATTTAAAGCA
* *
1280516 AGTAACTAGGCTTTTGAAGGCTTGAGTGAC
130 AGTAACTAAGCTTTTGAAGGCATGAGTGAC
1280546 TATAAATAGA
Statistics
Matches: 134, Mismatches: 23, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
169 4 0.03
170 129 0.96
171 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (170 bp):
TTTTCTTAACAATGGATATCTTTCACCTCATGTTTCCCAATGCAAACATCAAATTAAAATCTATT
TTAACCAAAAATAAAAACAATTCAATCTAAAATCCCTTATAAGATTATAAAACCATTTAAAGCAA
GTAACTAAGCTTTTGAAGGCATGAGTGACAACAAATGGCT
Found at i:1337621 original size:170 final size:169
Alignment explanation
Indices: 1337354--1338361 Score: 693
Period size: 170 Copynumber: 5.9 Consensus size: 169
1337344 AAAGCCATTG
* * * * ** ** * *
1337354 ATTGAAAAGAAAAGTCCATTTAAAGTTACTCATACCTTTAAAAGCCTAACTACTCGCTCTAAA-C
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTACTTTAAATG
* * * * * * *
1337418 GTTTTATAATCTTATAAATGATTTTACATTGAATTGTTTTTATTTTTTGTTAAAATAGATCATAA
66 GTTTTATAATCTTGTAAATGATTTGAAATTGAATT-TTTTCATTTTTGGTTGAAACAGATCATAA
* * *
1337483 TTTGATGTTTACATTGAGAAACATGAAGCAAGAGCCATCT
130 TTTGATATTTACAATGAGAAACATGAAGCAAGAGCCATCC
* * * * *
1337523 ATTGACAACAAAAGTCCATTCATAGTCACTCATCCCTTCAAAAGTCTAGTTACTTACTTGAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTACTTTAAATG
* * * *
1337588 GTTTTATGATCTTGTAAATGATTTGAAATTGAATTTTTCTTTCATTTTTTG-TGAAAGCAAATGA
66 GTTTTATAATCTTGTAAATGATTTGAAATTGAA--TTT-TTTCATTTTTGGTTGAAA-CAGATCA
* * ** * *
1337652 TAATTTGTTTTTTTGGAATGAGTAACATGAAGTGAA-AGCCATCC
127 TAATTTG-ATATTTACAATGAGAAACATGAAG-CAAGAGCCATCC
* * * * *
1337696 ATTGACAAGAAAAGTTCATTTATAGTCACTCATACCTCCGAAAGCCTTGTTA-ATAGCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTA-CTTTAAAT
* * * * *
1337760 GGATTTATAA-CTT-TATAGATAATTTTAAATCGAAGTTTTTTCATTTTTGGCTGAAACAGATCA
65 GGTTTTATAATCTTGTA-A-ATGATTTGAAATTGAA-TTTTTTCATTTTTGGTTGAAACAGATCA
* * *
1337823 TAATTTGATAATTACAAT-AGGAAACGTGAA--TAGAGACTCATCC
127 TAATTTGATATTTACAATGA-GAAACATGAAGCAAGAG-C-CATCC
* * * * * * * * *
1337866 ATTGATAAGAAAAGTCTATATATATTCTCTCATTCCTTCGAAAA-CCTTGTCACTTACTTTAAGT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTC-AAAAGCCTAGTTACTTACTTTAAAT
* * * *
1337930 GGTTTCATAA-CTCTGTAAATGATTTTAAATTGAATTTTTGTCATTTTTGGGTGAAACATATCAT
65 GGTTTTATAATCT-TGTAAATGATTTGAAATTGAATTTTT-TCATTTTTGGTTGAAACAGATCAT
* * * *
1337994 AATTTAATACTTACATTGAGAAACATGAAGCGAATG-G-AATCC
128 AATTTGATATTTACAATGAGAAACATGAAGC-AA-GAGCCATCC
** * * * * * * **
1338036 ATTGACATTAAAAGTCCATTTATA-ACGACTCATGCCTACGAATGTCTAGTTACACACTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTC-ACTCATACCTTCAAAAGCCTAGTTACTTACTTTAAAT
* * * * ** ** *
1338100 AGTTTTAAAATTTTGTAAATGATTTGTAATTGGGTTTGTTTTCATTTTTGGTT-AGGCAGATGAT
65 GGTTTTATAATCTTGTAAATGATTTGAAATT-GAATT-TTTTCATTTTTGGTTGAAACAGATCAT
* ** * * *
1338164 AATTTGATTTTTGGAATGGGAAACGTGAAGTAA-ACGCCATCC
128 AATTTGATATTTACAATGAGAAACATGAAGCAAGA-GCCATCC
* * * * *
1338206 ATTGACAAGAAAAATCTATTTATAGTCACTCATACCTTTAAAAGCCTAGTTGCTTGCTTTAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTACTTTAAATG
* * * ** * * * *
1338271 ATTTTGTAATCTTATAAGGGAGTTTCG--ATTAAACTATTTTCATTTTTGATTGAAACATATCAT
66 GTTTTATAATCTTGTAAATGA-TTT-GAAATTGAA-TTTTTTCATTTTTGGTTGAAACAGATCAT
* * *
1338334 AATTTGATGTTTGCATTGAGAAACATGA
128 AATTTGATATTTACAATGAGAAACATGA
1338362 GGTGAAAGTC
Statistics
Matches: 641, Mismatches: 160, Indels: 75
0.73 0.18 0.09
Matches are distributed among these distances:
167 1 0.00
168 2 0.00
169 76 0.12
170 359 0.56
171 57 0.09
172 44 0.07
173 99 0.15
174 3 0.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (169 bp):
ATTGACAAGAAAAGTCCATTTATAGTCACTCATACCTTCAAAAGCCTAGTTACTTACTTTAAATG
GTTTTATAATCTTGTAAATGATTTGAAATTGAATTTTTTCATTTTTGGTTGAAACAGATCATAAT
TTGATATTTACAATGAGAAACATGAAGCAAGAGCCATCC
Found at i:1361693 original size:11 final size:11
Alignment explanation
Indices: 1361677--1361702 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1361667 GTCTTATAAA
1361677 TGAATTTACAT
1 TGAATTTACAT
1361688 TGAATTTACAT
1 TGAATTTACAT
1361699 TGAA
1 TGAA
1361703 AAGGAAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (11 bp):
TGAATTTACAT
Found at i:1362386 original size:171 final size:169
Alignment explanation
Indices: 1362182--1362590 Score: 480
Period size: 169 Copynumber: 2.4 Consensus size: 169
1362172 NTCCATTTGA
* * * * * *
1362182 AGTCACTCATGCATTCGAAAGCCTAGTTACTCGCTTTAAATGATTTTCTAATCTTTTAAATAATT
1 AGTCACTCATGCCTTTGAAAGCCTAGCTACTCGCTTTAAATGGTTTTATAATCTTTTAAATGATT
* * * * * * * * * *
1362247 TTGGATTGAATTTTTTTTATTTTTGGTTAAAAACATATCATGATTTGATGTTTGGATCAGAAAAC
66 TT-AAATAAAATATTTTCATTTTTGGTT-AAAACAGATCATAATTTGATATTTGAATCAGAAAAC
* * * *
1362312 ATGAAACAAAAGCCATTCACTGATAAGAAACGTACACTAAT
129 ATGAAACAAAAACCATCCACTGACAAGAAAAGTACACTAAT
* ** *
1362353 AGTCACTCATGCCTTTGAAAACCTAGCTACTCGCTGGAAATGGTTTTATAATCTTATAAATGATT
1 AGTCACTCATGCCTTTGAAAGCCTAGCTACTCGCTTTAAATGGTTTTATAATCTTTTAAATGATT
* * *
1362418 TTAAATAAAATATTTTCATTTTTGGTTAAAACAGATCATAATTTGATATTTGAATTAGGAAATAT
66 TTAAATAAAATATTTTCATTTTTGGTTAAAACAGATCATAATTTGATATTTGAATCAGAAAACAT
* * * *
1362483 GAAGCAAAAACCATCCATTGACAAGAAAAGTCCATTAAT
131 GAAACAAAAACCATCCACTGACAAGAAAAGTACACTAAT
* * *
1362522 AGCCACTCATGCCTTTGAAAGCGTAGCTACTCACTTTAAATGGTTTTATAA-C-TTTAAATGATT
1 AGTCACTCATGCCTTTGAAAGCCTAGCTACTCGCTTTAAATGGTTTTATAATCTTTTAAATGATT
1362585 TTAAAT
66 TTAAAT
1362591 CAATTTTTNN
Statistics
Matches: 200, Mismatches: 38, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
167 16 0.08
168 1 0.00
169 107 0.54
170 19 0.09
171 57 0.28
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (169 bp):
AGTCACTCATGCCTTTGAAAGCCTAGCTACTCGCTTTAAATGGTTTTATAATCTTTTAAATGATT
TTAAATAAAATATTTTCATTTTTGGTTAAAACAGATCATAATTTGATATTTGAATCAGAAAACAT
GAAACAAAAACCATCCACTGACAAGAAAAGTACACTAAT
Found at i:1388171 original size:171 final size:168
Alignment explanation
Indices: 1387825--1388363 Score: 425
Period size: 170 Copynumber: 3.2 Consensus size: 168
1387815 CGGTCGTTAC
* * * * * * * * * *
1387825 ACTTTTTTTACCAATGGACGACTTTTGCTTCACGTTTCCTAAGGCAAACATTCAAATATAATTTA
1 ACTTTTCTTATCAATGGATGAGTTTTGCTTCAAG-TTCTTGAGACAGACATTCAAATATAATCTA
* * * * * ** *
1387890 TTTTCATAAAAAATATAACAAAAT-TCAACTTAAAATTAATAAG-AAGATTATAAAA-TCACTT-
65 TTATAACAAAAAATATAA-AAAATAT-AACCTAAAATCAAT-AGTGGGACTATAAAACT-A-TTC
* * * *
1387951 AAA-CGAGTAATAAAGCTATCGAAGGCTTGAATGACTATAAATAG
125 AAAGCAAGTAATAAGGCTTTC-AAGGCTTGAGTGACTATAAATAG
* * * ** **
1387995 ACTTTTCTTATCAATGGATGAGTTTTGGTTCACGTTTTCTGAGGTAGACATTCAGTTATAA-CTT
1 ACTTTTCTTATCAATGGATGAGTTTTGCTTCAAGTTCT-TGAGACAGACATTCAAATATAATC-T
* *
1388059 ATTATAACTAAAAATAT-AAAAATATTAAACCTAAAATCAATTA-TGGGACTAT-AAAGTCATTC
64 ATTATAACAAAAAATATAAAAAATA-T-AACCTAAAATCAA-TAGTGGGACTATAAAACT-ATTC
*
1388121 AAAGCAAGTAATAAGGCTTTCAATGGCTTGAGTGACTATAAATGG
125 AAAGCAAGTAATAAGGCTTTCAA-GGCTTGAGTGACTATAAATAG
* * * * *
1388166 ACTTTTCTTACCAACGCATG-GTTTTTCCTTCAAGTTCTTGAGACAGACATTTAAATATAATCTA
1 ACTTTTCTTATCAATGGATGAG-TTTTGCTTCAAGTTCTTGAGACAGACATTCAAATATAATCTA
* * * * *
1388230 TTTTAACAAAAAATATAAAAAATATAACTTAAAATCAATAGTGGGATTATAAAACTATTTAAAGT
65 TTATAACAAAAAATATAAAAAATATAACCTAAAATCAATAGTGGGACTATAAAACTATTCAAAGC
* * * *
1388295 GAGTAGTAAGGCTATTGAAGGCTTGAGTGACTGTAAATAG
130 AAGTAATAAGGCT-TTCAAGGCTTGAGTGACTATAAATAG
* *
1388335 ACTTTT-TTGTTAATGGATGAGTTTTGCTT
1 ACTTTTCTTATCAATGGATGAGTTTTGCTT
1388364 AAATATAATT
Statistics
Matches: 294, Mismatches: 58, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
168 22 0.07
169 72 0.24
170 129 0.44
171 71 0.24
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (168 bp):
ACTTTTCTTATCAATGGATGAGTTTTGCTTCAAGTTCTTGAGACAGACATTCAAATATAATCTAT
TATAACAAAAAATATAAAAAATATAACCTAAAATCAATAGTGGGACTATAAAACTATTCAAAGCA
AGTAATAAGGCTTTCAAGGCTTGAGTGACTATAAATAG
Found at i:1388326 original size:169 final size:171
Alignment explanation
Indices: 1387872--1388340 Score: 474
Period size: 170 Copynumber: 2.8 Consensus size: 171
1387862 CCTAAGGCAA
* * * * * **
1387872 ACATTCAAATATAATTTATTTTCATAAAAAATATAACAAAAT-TCAACTTAAAATTAATAAG-AA
1 ACATTCAAATATAATCTATTTTAACAAAAAATATAA-AAAATATAAACTTAAAATCAAT-AGTGG
* * * *
1387935 GATTATAAAATCACTTAAA-CGAGTAATAAAGCTATCGAAGGCTTGAATGACTATAAATAGACTT
64 GATTATAAAATCATTTAAAGCGAGTAATAAGGCTATTGAAGGCTTGAGTGACTATAAATAGACTT
* * * ** * * **
1387999 TTCTTATCAATGGATGAGTTTTGGTTCACGTTTTCTGAGGTAG
129 TTCTTACCAACGCATGAGTTTTCCTTCAAGTTCTCTGAGACAG
** * * *
1388042 ACATTCAGTTATAA-CTTATTATAACTAAAAATAT-AAAAATATTAAACCTAAAATCAATTA-TG
1 ACATTCAAATATAATC-TATTTTAACAAAAAATATAAAAAATA-TAAACTTAAAATCAA-TAGTG
* * * * * *
1388104 GGACTATAAAGTCATTCAAAGCAAGTAATAAGGCT-TTCAATGGCTTGAGTGACTATAAATGGAC
63 GGATTATAAAATCATTTAAAGCGAGTAATAAGGCTATTGAA-GGCTTGAGTGACTATAAATAGAC
1388168 TTTTCTTACCAACGCATG-GTTTTTCCTTCAAGTTCT-TGAGACAG
127 TTTTCTTACCAACGCATGAG-TTTTCCTTCAAGTTCTCTGAGACAG
*
1388212 ACATTTAAATATAATCTATTTTAACAAAAAATATAAAAAATAT-AACTTAAAATCAATAGTGGGA
1 ACATTCAAATATAATCTATTTTAACAAAAAATATAAAAAATATAAACTTAAAATCAATAGTGGGA
* * *
1388276 TTATAAAA-CTATTTAAAGTGAGTAGTAAGGCTATTGAAGGCTTGAGTGACTGTAAATAGACTTT
66 TTATAAAATC-ATTTAAAGCGAGTAATAAGGCTATTGAAGGCTTGAGTGACTATAAATAGACTTT
1388340 T
130 T
1388341 TTGTTAATGG
Statistics
Matches: 240, Mismatches: 46, Indels: 27
0.77 0.15 0.09
Matches are distributed among these distances:
168 8 0.03
169 67 0.28
170 96 0.40
171 69 0.29
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (171 bp):
ACATTCAAATATAATCTATTTTAACAAAAAATATAAAAAATATAAACTTAAAATCAATAGTGGGA
TTATAAAATCATTTAAAGCGAGTAATAAGGCTATTGAAGGCTTGAGTGACTATAAATAGACTTTT
CTTACCAACGCATGAGTTTTCCTTCAAGTTCTCTGAGACAG
Found at i:1388718 original size:171 final size:171
Alignment explanation
Indices: 1388393--1391243 Score: 2530
Period size: 171 Copynumber: 16.7 Consensus size: 171
1388383 GCAAAATTTT
* * * * * ** *
1388393 AAAAAATTCAACTTAAAATCAGTAATGAGTTTGTAAAACCATTTAACGTTACCAATAAGACTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * *
1388458 GAAGGCTTGAGTGACTATAAATGGACTTTTTTTTATCAATGGATGGCTTTTGCTTCATGTTTCCC
66 AAAGGCTTGAGTGACTATAAATGGAC-TTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCT
* * **** *
1388523 GAGGTAGATATTTTGTTATAATTTATTTTAACCAAAAATATA
130 AAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* * * * *
1388565 AAAAAATTCAATTTAAAATCAATTATGAGATTATAAAACAATTTAAAGTGAGCAATGAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * *
1388630 AAAAGCTTGAGGGAATATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCA
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
* * ** * * **
1388695 AGGTAAACATTTAGTTGTAATTTATTTTAATTAAAAATATA
131 AGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* * * * * *
1388736 AAAATATTCAACTCAAAATCAATTATGAGATTATAAAACTATTGAAAGTGAGAAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * * * * *
1388801 AATGGCTTGAGTGACTAGAAATAGACTTTTCTTACCAATTGATAGCTTTTGATTCACGTTTTTTG
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
* * *
1388866 AGGTAAACATTC-AA-ATAATATATTTTAA-CAAAATATATT
131 AGGTAGACATTCAAATATAATCTATTTTAACCAAAA-ATATA
* * * * * * *
1388905 AAAAAATTCAATTTAACATCAATAATGACATTATAAAATCATTTAAAGTGCG-AACTAAAGCTAT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAA-TAAGGCTTT
* * ** ** *
1388969 CAAAGGCTTGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGATTTTTTTTTCATG-TTTCT
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTC-
* ** * * * *
1389033 TGAGACAGGCATTCAAATATAATCTGTTTTAACTAAAAATGTGA
129 TAAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATAT-A
* * * *
1389077 AAAAAA-TCAATTTAAAATCAATAATGAGACTATAAAGCCATTTAAAGTGAGTAACAAGG-TTAT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT-T
* * * *
1389140 TAAAGGCTTGAGTAACTATAAATAGACTTTT-TT-TGCAATTGGATGGCTTTTGCTTCAC-ATTT
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTAT-CAA-TGGATGGCTTTTGCTTCACGTTTT
** * * *
1389202 CATAAGGTAGACATTCAGTTATAATATATTTTAATCAAAAATGTCA
128 C-TAAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATAT-A
* * * *
1389248 AAAAAATTCAACTTAATATCAATTATGAGAATATCAAAACCATTTAAAGAGAGTAATAAGGCTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTAT-AAAACCATTTAAAGTGAGTAATAAGGCTTT
* * * *
1389313 CGAAGGCTAGAGTGACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTCT
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCT
* * * * ** *
1389378 GAGGCAGACATTCTAATATAATCTGTTTTAAGGAAAAAT-TT
130 AAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* *
1389419 AAAAAATTCAGCTTAAAATCAATAATGAAATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TTT
* * * * * * * **
1389484 C-AGGGCTTGAGTGACTAGAAATGGCCTTTTTTTA-CTAATGGATGACTTATGATTCATATTTTT
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTTGCTTCA-CGTTTT
* * * * **
1389547 CGAA-GTAGACATTTAATTATAATATATTTTAATTAAAAATATAA
128 CTAAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATAT-A
* * * ** * * * *
1389591 AAAAAATTTAACTTATAATCAATTATGAGGCTATCAAACCATTCAAAGTAAGTATTAAGG-TTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* ** * ** * ** * * * * * *
1389655 AAAAGAATGGGTGACTATAAATAAACTTTTCTTGTGGACGAATAGCTTTTTCTTCATGTTTCCTG
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCT-
** * * *
1389720 AAGCAAG-CACTT-AAATATAATCTATTTTAACTAAAAATTTT
130 AAGGTAGACA-TTCAAATATAATCTATTTTAACCAAAAATATA
* * * ** * * * * * *
1389761 ATAAAATTAAACTTAAAATTAGCAATCAGATTGTAAAACTATTTAAAGCGAGTAATAAGGTTTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * *
1389826 AAAGGCTTGGGTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTTTCTG
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
*
1389891 AGGTAGACATT-ATAATATAATCTATTTTAATCAAAAAT-TAA
131 AGGTAGACATTCA-AATATAATCTATTTTAACCAAAAATAT-A
* * * *
1389932 AAAAAATTCAACTTAAAATCAATAATGAGATTATAATACTATTTAAAGCGAATAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * *
1389997 AAAGGTTTGAGTGACAAT-AATGAACTTTGCTTATCAGTGGATGGCTTTTGCTTCATGTTTT-TC
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCT-
* * *
1390060 AAGGCAGACATTCAAATATAATTTATTTTAA-AAAAAATATA
130 AAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* * *
1390101 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTATC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * * * *
1390166 GAAGGCTTAAGTTACTATAAATGGACTTTTTTTTGTCAATAGAGGGCTTTTGCTTCATG-TTTCT
66 AAAGGCTTGAGTGACTATAAATGGAC-TTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCT
* * * *
1390230 CAAGATAGGCATTCAAATATAATCTGTTTTAACC-AAAATGTGA
130 -AAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATAT-A
* * **
1390273 AAAAAATT-AACTTAAAATCAATAATGAGACTATAAAGCCATTTAAAGCAAGTAATAAGGCTATT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT-TT
* * ** * * * *
1390337 -GAAGGCTTGAGTGACTATAAATAGACTTTTCTTGCCTATGGATGACTTTTACTTTACG-TTTCA
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTC-
* ** * * *
1390400 TGAGACAGACATTC-AGTCATAATATATTTTAACCAAAAATGTAA
129 TAAGGTAGACATTCAAAT-ATAATCTATTTTAACCAAAAATAT-A
* *
1390444 AAAAAATTCAACTTAAAATCAA-ATATGAGATTATCAAAACTATTTAAAGGGAGTAATAAGGCTT
1 AAAAAATTCAACTTAAAATCAATA-ATGAGATTAT-AAAACCATTTAAAGTGAGTAATAAGGCTT
* ** * *
1390508 TCGAAGGCTACAGTGACTATGAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTT
64 TCAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTC
** * * * * ** *
1390573 TAAGACAGACATTCTAATGTAATTTGTTTTAATGAAAAATTTA
129 TAAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
** *
1390616 AAAGCATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * * *
1390681 AAACGTTTGAGTGACTATAAATGGACTTTTCTTACCAATAGATAGCTTTTGATTCATCTTTTTC-
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCA-CGTTTTCT
* * * ** * ** * *
1390745 GAGGAAGGCATTCAGTTATAATTTATTTTAATTAAAAATGTG
130 AAGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* * * * * *
1390787 AACAAATTCAACTGAAAATCAATGATGAGATTGTAAAACCATTTCAAGTAAGTAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * ** * * * *
1390852 AATGGCTGGAGTGACAATAAATAGACTTTTCTTGCCAATGAATGGGTTTT-TTTCATGTTTTCTA
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
* * **
1390916 AGGTAGATATTCAAATATAATCTGTTTTAACCAAAAACGTA
131 AGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* * * * **
1390957 AAAAAATTCAACTTAAAATCAATTATCAGACTATAAAACCGTTTAAAGCAAGTAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
* * * * * * *
1391022 GAAGGCTTGAGTGACTATAAATGAACTTTTGTTGTCAATGGATGACTTTTACTTCACGTTTTCCA
66 AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
* * * *
1391087 AGATAAAGAGTCAAATATAATCTATTTTAACCAAAAATATA
131 AGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
* **
1391128 AAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCT-AGTAATAAGTTTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAG-TGAGTAATAAGGCTTT
** * * *
1391191 TGAGGGCTTGAGTAACTATAAATGGACTTTTCTTA-CTAATAGATGGCTTTTGC
65 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTTGC
1391244 CTCATGTTCT
Statistics
Matches: 2171, Mismatches: 452, Indels: 114
0.79 0.17 0.04
Matches are distributed among these distances:
168 9 0.00
169 212 0.10
170 509 0.23
171 986 0.45
172 235 0.11
173 203 0.09
174 16 0.01
175 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC
AAAGGCTTGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTTCTA
AGGTAGACATTCAAATATAATCTATTTTAACCAAAAATATA
Found at i:1389072 original size:340 final size:339
Alignment explanation
Indices: 1388392--1393118 Score: 3716
Period size: 341 Copynumber: 13.9 Consensus size: 339
1388382 TGCAAAATTT
* * * * * * ** *
1388392 TAAAAAATTCAACTTAAAATCAGTAATGAGTTTGTAAAACCATTTAACGTTACCAATAAGACTTT
1 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
* * * **
1388457 CGAAGGCTTGAGTGACTATAAATGGACTTTTTTTTATCAATGGATGGCTTTTGCTTCATGTTTCC
66 C-AAGGCTTGAGTGACTATAAATGGAC-TTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTT
* * *** * * *
1388522 CGAGGTAGATATTTTGTTATAATTTATTTTAACCAAAAATATAAAAAAATTCAATTTAAAATCAA
129 TGAGGTAGACA-TTCAATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATCAA
* * * * * *
1388587 TTATGAGATTATAAAACAATTTAAAGTGAGCAATGAGGCTTTCAAAAGCTTGAGGGAATATAAAT
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAT
* * * *** ** * * ** * *
1388652 GGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGTAAACATTTAGTTGTAATT
258 GAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATAATC
* *
1388717 TATTTTAATTAAAAATA
323 TATTTTAACTAAAAATG
* * * *
1388734 TAAAAATATTCAACTCAAAATCAATTATGAGATTATAAAACTATTGAAAGTGAGAAATAAGGCTT
1 TAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * *
1388799 TCAATGGCTTGAGTGACTAGAAATAGACTTTTCTTACCAATTGATAGCTTTTGATTCACGTTTTT
65 TCAA-GGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTT
* * * *
1388864 TGAGGTAAACATTCAA-ATAATATATTTTAA-CAAAATATATTAAAAAATTCAATTTAACATCAA
129 TGAGGTAGACATTCAATATAATATATTTTAATCAAAA-ATATAAAAAAATTCAACTTAAAATCAA
* * * * * *
1388927 TAATGACATTATAAAATCATTTAAAGTGCG-AACTAAAGCTATCAAAGGCTTGAGTGACTATAAA
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAA-TAAGGCTTTCAAAGGCTTGAGTGACTATAAA
* ** * *
1388991 TGAACTTTTCTTGTCAATGGATGATTTTTTTTTCATGTTTCTTGAGACAGGCATTCAAATATAAT
257 TGAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATAAT
*
1389056 CTGTTTTAACTAAAAATG
322 CTATTTTAACTAAAAATG
* * * * * * *
1389074 TGAAAAAAATCAATTTAAAATCAATAATGAGACTATAAAGCCATTTAAAGTGAGTAACAAGGTTA
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT-
* * * ** * *
1389139 TTAAAGGCTTGAGTAACTATAAATAGACTTTT-TTTGCAATTGGATGGCTTTTGCTTCACATTTC
64 TTCAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAA-TGGATGGCTTTTGCTTCACGTTTT
* * * * *
1389203 ATAAGGTAGACATTCAGTTATAATATATTTTAATCAAAAATGTCAAAAAAATTCAACTTAATATC
128 TTGAGGTAGACATTCA-ATATAATATATTTTAATCAAAAATAT-AAAAAAATTCAACTTAAAATC
* * * * *
1389268 AATTATGAGAATATCAAAACCATTTAAAGAGAGTAATAAGGCTTTCGAAGGCTAGAGTGACTATG
191 AATTATGAGATTAT-AAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATA
* * * *
1389333 AATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTT-TCTGAGGCAGACATTCTAATAT
255 AATGAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCT-TGAGACAGACATTCAAATAT
* ** *
1389397 AATCTGTTTTAAGGAAAAATT
319 AATCTATTTTAACTAAAAATG
* * *
1389418 TAAAAAATTCAGCTTAAAATCAATAATGAAATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
1 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC-TT
* * * * * * * * ** *
1389483 TCAGGGCTTGAGTGACTAGAAATGGCCTTTTTTTACTAATGGATGACTTATGATTCATATTTTTC
65 TCAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTTT
* * * * *
1389548 GAAGTAGACATTTAATTATAATATATTTTAATTAAAAATATAAAAAAAATTTAACTTATAATCAA
130 GAGGTAGACATTCAA-TATAATATATTTTAATCAAAAATAT-AAAAAAATTCAACTTAAAATCAA
** * * * * * ** *
1389613 TTATGAGGCTATCAAACCATTCAAAGTAAGTATTAAGG-TTTCAAAAGAATGGGTGACTATAAAT
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAT
* ** * * * * *
1389677 AAACTTTTCTTGTGGACGAAT-AGCTTTTTCTTCATGTTTCCTGA-AGCA-AGCACTT-AAATAT
258 GAACTTTTCTTGTCAATGGATGA-CTTTTGCTTCACGTTTCTTGAGA-CAGA-CA-TTCAAATAT
*
1389738 AATCTATTTTAACTAAAAATTT
319 AATCTATTTTAACTAAAAA-TG
* * * *** * * * * *
1389760 TATAAAATTAAACTTAAAATTAGCAATCAGATTGTAAAACTATTTAAAGCGAGTAATAAGGTTTT
1 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGG-CTT
* * * * * *
1389825 TAAAGGCTTGGGTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTTTCT
65 TCAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTTT
* *
1389890 GAGGTAGACATTATAATATAATCTATTTTAATCAAAAAT-TAAAAAAAATTCAACTTAAAATCAA
130 GAGGTAGACATT-CAATATAATATATTTTAATCAAAAATAT-AAAAAAATTCAACTTAAAATCAA
* * * * * * *
1389954 TAATGAGATTATAATACTATTTAAAGCGAATAATAAGGCTTTCAAAGGTTTGAGTGACAAT-AAT
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAT
* * * * * * *
1390018 GAACTTTGCTTATCAGTGGATGGCTTTTGCTTCATGTTT-TTCAAGGCAGACATTCAAATATAAT
258 GAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTT-GAGACAGACATTCAAATATAAT
* * *
1390082 TTATTTTAA-AAAAAATA
322 CTATTTTAACTAAAAATG
* * * *
1390099 TAAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTA
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * ** * * * *
1390164 TCGAAGGCTTAAGTTACTATAAATGGACTTTTTTTTGTCAATAGAGGGCTTTTGCTTCATGTTTC
65 TC-AAGGCTTGAGTGACTATAAATGGAC-TTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTT
** * * * * * *
1390229 TCAAGATAGGCATTCAAATATAATCTGTTTTAA-CCAAAATGTGAAAAAAATT-AACTTAAAATC
128 TTGAGGTAGACATTC-AATATAATATATTTTAATCAAAAATAT-AAAAAAATTCAACTTAAAATC
* * * ** *
1390292 AATAATGAGACTATAAAGCCATTTAAAGCAAGTAATAAGGCTATT-GAAGGCTTGAGTGACTATA
191 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT-TTCAAAGGCTTGAGTGACTATA
* * * * * *
1390356 AAT-AGACTTTTCTTGCCTATGGATGACTTTTACTTTACGTTTCATGAGACAGACATTC-AGTCA
255 AATGA-ACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAAT-A
* *
1390419 TAATATATTTTAACCAAAAATG
318 TAATCTATTTTAACTAAAAATG
* * *
1390441 TAAAAAAAATTCAACTTAAAATCAAATATGAGATTATCAAAACTATTTAAAGGGAGTAATAAGGC
1 T--AAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATTTAAAGTGAGTAATAAGGC
** * *
1390506 TTTCGAAGGCTACAGTGACTATGAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTTT
63 TTTC-AAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTT
* ** * * * * * **
1390571 TTTAAGACAGACATTCTAATGTAATTTGTTTTAATGAAAAATTTAAAAGCATTCAACTTAAAATC
127 TTTGAGGTAGACATTC-AATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATC
* * * *
1390636 AATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAACGTTTGAGTGACTATAA
191 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAA
* ** * * * **
1390701 ATGGACTTTTCTTACCAATAGAT-AGCTTTTGATTCATC-TTT-TTCGAGGA-AGGCATTCAGTT
256 ATGAACTTTTCTTGTCAATGGATGA-CTTTTGCTTCA-CGTTTCTT-GA-GACAGACATTCAAAT
* *
1390762 ATAATTTATTTTAATTAAAAATG
317 ATAATCTATTTTAACTAAAAATG
* * * * * *
1390785 TGAACAAATTCAACTGAAAATCAATGATGAGATTGTAAAACCATTTCAAGTAAGTAATAAGGCTT
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* * * * * * * * *
1390850 TCAATGGCTGGAGTGACAATAAATAGACTTTTCTTGCCAATGAATGGGTTTT-TTTCATGTTTTC
65 TCAA-GGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTT
* * * * * **
1390914 TAAGGTAGATATTCAAATATAATCTGTTTTAACCAAAAACGTAAAAAAATTCAACTTAAAATCAA
129 TGAGGTAGACATTC-AATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATCAA
* * * ** *
1390979 TTATCAGACTATAAAACCGTTTAAAGCAAGTAATAAGGCTTTCGAAGGCTTGAGTGACTATAAAT
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAT
* * ** * * * *
1391044 GAACTTTTGTTGTCAATGGATGACTTTTACTTCACGTTT-TCCAAGATAAAGAGTCAAATATAAT
258 GAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCT-TGAGACAGACATTCAAATATAAT
* *
1391108 CTATTTTAACCAAAAATA
322 CTATTTTAACTAAAAATG
**
1391126 TAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCT-AGTAATAAGTTT
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-TGAGTAATAAG-GC
* * * * * * * *
1391189 TTTGAGGGCTTGAGTAACTATAAATGGACTTTTCTTACTAATAGATGGCTTTTGCCTCATG-TTC
63 TTTCAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTT
* *
1391253 TCGAGGT----A-T---T-T--TA-A---T--T-AAAAATATAAAAAAATTTAACTTAAAATCAA
128 TTGAGGTAGACATTCAATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATCAA
* * * *
1391300 TTATGAGATTATAAAACCGTTTAAAGTGAATAATAAGGCTATCGAAA-GTTTGAGTGACTATAAA
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC-AAAGGCTTGAGTGACTATAAA
* * * * * * *
1391364 T-AGATTTTTCTT-ACTAATGGAT-AGTTTTTGCTTCACGTTTCCTAAGATAGATATTCAAATAT
257 TGA-ACTTTTCTTGTC-AATGGATGA-CTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATAT
*
1391426 AATCTATTTTAACCAAAAATG
319 AATCTATTTTAACTAAAAATG
* * ** * * *
1391447 TAAAAAAATTTAACTTAAATTCAATTATGAGATTATAAAATAATTTAAAGCGAGCAATGAGGCTT
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
** * ** * * * **
1391512 TCAAAGGCTTGAGCAATTATAAAAAGACTTTTCTTACCAATGGATGTCTTTTACTTCACATTTCC
65 TC-AAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTT
* * * * * *
1391577 TGAGGTAGACAAT-AGTTATGATTTATTTTAATAAAAAATATAAAAAAATTCAGC-TAAAATCAA
129 TGAGGTAGACATTCA-ATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATCAA
* * * *
1391640 TTATGAGACTATAAAACCATTTAAAGTGAGTAATAAGGGTTTCAATGACTTGAGTGACTATAAAT
193 TTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAT
* ** * ** * *
1391705 AAACTTTTCTTACCAATGAATGGTTTTTGCTTCACGTTTCCTGAAACAGACATTCAAATATAATC
258 GAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATAATC
*
1391770 TATTTTAA-TAAAAAATA
323 TATTTTAACT-AAAAATG
* * * *
1391787 TAAAAAATTCAACTTAAAAT-GATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTT
1 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
* * * *
1391851 CGAAGACTTGAGTGACTGTAAA-GGAACTTTTCTTATCAATGAATGGCTTTT-CTTCA--TATTT
66 C-AAGGCTTGAGTGACTATAAATGG-ACTTTTCTTACCAATGGATGGCTTTTGCTTCACGT-TTT
* ** * * * * * *
1391912 TCGAGAAAGGCATTCAGTTATAATATGTTTTAA-CTAAAAATGTAAAAAAGTTTAACTTAAAATC
128 TTGAGGTAGACATTCA-ATATAATATATTTTAATC-AAAAATATAAAAAAATTCAACTTAAAATC
* * * ** * ** *
1391976 AATCATAAGATTACAAAACCATTTAAAAAGAGTAATAAGTCTTTTGAAGGCTTGAATGACTATAA
191 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAA
* * * ** *
1392041 ATAAATTTTTCTTGCCAATGGA-GGTTTTTGCTTCACGTTTCTTGAGACAAACATTCAAATATAA
256 ATGAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATAA
* * * *
1392105 TCTGTTTTTACAAAAAATT
321 TCTATTTTAACTAAAAATG
* * *
1392124 TAAAACAATTCAAC-TAAAATTCAATTATGAGATTATAAAACAATTTAAAGGGAGAAATAAGGCT
1 TAAAA-AATTCAACTTAAAA-TCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* ** * ** * * *
1392188 TTTAATACCTTGAGTGACTATAAAGGGCACTTGCCTTGCCAATAGATGGCTTTTGCTTCATGTTT
64 TTCAA-GGCTTGAGTGACTATAAATGG-ACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTT
**** * * * * * * *
1392253 CCCAAGGTAAACAATCAAATATAATTTATTTTAATCATAAATGTAAAACAATTCAACTTAAATTC
127 TTTGAGGTAGACATTC-AATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATC
* * * *
1392318 AATTATGAGATTATAAAACAATTTAAAGTGAGCAATAAGGCTTTTAAGGGCTTGAGTGACTATAA
191 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAA
* * * * * * * **
1392383 AT-AGACTTTTCCTGCCAATGCATGTCTTTTGCTTCACATTTCCTGAGGCAGACATTCAGTTATA
256 ATGA-ACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATA
*
1392447 ATTTATTTTAA-TAAAAAATG
320 ATCTATTTTAACT-AAAAATG
* **
1392467 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCT-AGTACTAAGTTT
1 T-AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-TGAGTAATAAG-GC
* * * * * * * *
1392531 TTTGAGGGTTTGAGTGACTATAAATAGACTATTCTCT-CAAATGGATGGCTTTTACTTCACGTAT
63 TTTCAAGGCTTGAGTGACTATAAATGGACTTTTCT-TACCAATGGATGGCTTTTGCTTCACGTTT
**** * * * ** * *
1392595 CCCAAGGCAGACACTCAGTTATAATATGCTTTAA-CTAAAAATCTAAAAAAAATT-AACCTAAAA
127 TTTGAGGTAGACATTCA-ATATAATATATTTTAATC-AAAAATAT-AAAAAAATTCAACTTAAAA
* * * * * * *
1392658 TCAATCATGAGATTATAAAATCATTCAAAACT-AGTAGTAAGGCTTTCGAAGGCTTGAATGACTA
189 TCAATTATGAGATTATAAAACCATT-TAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTA
* * * ** *
1392722 TAAAT-AGACTTTTCAT-ACTAATGGATG-CTTTTGCTTCATGTTTTCTAAAG-CAGACATTTAA
253 TAAATGA-ACTTTTCTTGTC-AATGGATGACTTTTGCTTCACG-TTTCTTGAGACAGACATTCAA
* * * *
1392783 TTATAATATATTTTAATTAAAAATA
315 ATATAATCTATTTTAACTAAAAATG
* ** * * * * * ** *
1392808 TAAAAACATTTAGTTTAAAATCAATTATGAGGTTTTCAAACCACTTAGAGCAAGTAATAAGGTTT
1 TAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* ** * * * ** * * * * *
1392873 TCGAAAGAATGTA-TAACTATATATAGACTTTTCTTGTCGATGAATGGCTTTTTCTTTATGTTTT
65 TC-AAGGCTTG-AGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTT
** * * * *
1392937 TCAAGGTAGACAGTTAAATATAATCTACTTTAATAAAAAATATAAAACAAATTCAACTTAAAATC
128 TTGAGGTAGACA-TTCAATATAATATATTTTAATCAAAAATATAAAA-AAATTCAACTTAAAATC
* * * * * *
1393002 AGTAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTGT-GAAGGTTTGAATGACTATA
191 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT-TCAAAGGCTTGAGTGACTATA
* * * ** *
1393066 AATGAACTTTTTTTGTCAGTGGATGGCTTTTGCTTCATATTTCTTAAGACAGA
255 AATGAACTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGA
1393119 TGTCAGTTAA
Statistics
Matches: 3519, Mismatches: 727, Indels: 277
0.78 0.16 0.06
Matches are distributed among these distances:
320 3 0.00
321 159 0.05
322 90 0.03
323 8 0.00
324 1 0.00
327 1 0.00
328 2 0.00
330 1 0.00
331 2 0.00
332 1 0.00
334 1 0.00
335 3 0.00
336 11 0.00
337 101 0.03
338 166 0.05
339 88 0.03
340 663 0.19
341 699 0.20
342 661 0.19
343 542 0.15
344 310 0.09
345 6 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (339 bp):
TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT
CAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGGCTTTTGCTTCACGTTTTTTG
AGGTAGACATTCAATATAATATATTTTAATCAAAAATATAAAAAAATTCAACTTAAAATCAATTA
TGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATGAA
CTTTTCTTGTCAATGGATGACTTTTGCTTCACGTTTCTTGAGACAGACATTCAAATATAATCTAT
TTTAACTAAAAATG
Found at i:1390845 original size:855 final size:850
Alignment explanation
Indices: 1388393--1393118 Score: 3996
Period size: 855 Copynumber: 5.6 Consensus size: 850
1388383 GCAAAATTTT
* * * * ** **
1388393 AAAAAATTCAACTTAAAATCAGTAATGAGTTTGTAAAACCATTTAACGTTACCAAT-AAGACTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAG-CTTT
* * * *
1388457 CGAAGGCTTGAGTGACTATAAATGGACTTTTTTTTATCAATGGATGGCTTTTGCTTCATGTTTCC
65 CGAAGGCTTAAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTT-T
* * * **** * *
1388522 CGAGGTAGATATTTTGTTATAATTTATTTTAACCAAAAATATAAAAAAATTCAATTTAAAATCAA
128 CAAGATAGACATTCAAATATAATCTATTTTAA-CAAAAATATAAAAAAATT-AACTTAAAATCAA
* ** * * ** * * *
1388587 TTATGAGATTATAAAACAATTTAAAGTGAGCAATGAGGCTTTCAAAAGCTTGAGGGAATATAAAT
191 TTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAAT
* * * *** * * * * *
1388652 GGACTTTTCTT-ATCAATGGATGGCTTTTGCTTCACGTTTCCCAAGGTAAACATTTAGTTGTAAT
256 AGACTTTTCTTGA-CTATGGATGGCTTTTGCTTTACGTTTCATGAGATAGACATTCA-ATATAAT
* * * * *
1388716 TTATTTTAATTAAAAATAT-AAAAATATTCAACTCAAAATCAATTATGAGATTATAAAACTATTG
319 ATATTTTAATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * * *
1388780 AAAGTGAGAAATAAGGCTTTC-AATGGCTTGAGTGACTAGAAATAGACTTTTCTTACCAATTGAT
384 AAAGTGAGTAATAAGGCTTTCGAA-AGCTTGAGTGACTATAAATAGACTTTTCTTATCAATGGAT
* * * ** * *
1388844 AGCTTTTGATTCACGTTTTTTGAGGTAAACATTC-AA-ATAATATATTTTAA-CAAAATATATTA
448 AGCTTTTGCTTCACGTTTCTTAAGACAGACATTCAAATATAATCTATTTTAATCAAAA-AT-TTA
* * * * * * *
1388906 AAAAATTCAATTTAACATCAATAATGACATTATAAAATC-ATTTAAAGTGCG-AACTAAAGCTAT
511 AAAAATTCAACTTAAAATCAATAATGAGATTATAAAA-CAATTTAAAGCGAGCAA-TAAGGCTTT
* ** **
1388969 CAAAGGCTTGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGAT-TTTT--TTTTCATGTTT
574 CAAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATG-TCTTTTGATTCACAT-TTT
* ** * * *
1389031 CTTGA-GACAGGCATTCAAATATAATCTGTTTTAACT-AAAAATGTGAAAAAAA-TCAATTTAAA
637 C-TGAGGA-AGACATTCAGTTATAATTTATTTTAA-TAAAAAATGT-AAAAAAATTCAACTTAAA
* * * * * *
1389093 ATCAATAATGAGACTATAAAGCCATTTAAAGTGAGTAACAAGG-TTATTAAAGGCTTGAGTAACT
698 ATCAATAATGAGATTATAAAACCATTTAAAGTAAGTAATAAGGCTT-TCAAAGGCTTGAGTGACT
* * * *
1389157 ATAAATAGACTTT-TTTTGCAATTGGATGGCTTTTGCTTCACATTTCAT-AAGGTAGACATTCAG
762 ATAAATAGACTTTCTTAT-CAA-TGGATGGCTTTTGCTTCACGTTTC-TCAAGGCAGACATTCAA
* *
1389220 TTATAATATATTTTAATC-AAAAATGTCA
824 ATATAATATATTTTAA-CAAAAAATAT-A
* * * * *
1389248 AAAAAATTCAACTTAATATCAATTATGAGAATATCAAAACCATTTAAAGAGAGTAATAAGGCTTT
1 AAAAAATTCAACTTAAAATCAATAATGAGATTAT-AAAACCATTTAAAGCGAGTAATAAAGCTTT
* *
1389313 CGAAGGC-TAGAGTGACTATGAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACGTTTTC
65 CGAAGGCTTA-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTC
* ** * * * * *
1389377 TGAGGCAGACATTCTAATATAATCTGTTTTAAGGAAAAAT-TTAAAAAATTCAGCTTAAAATCAA
129 -AAGATAGACATTCAAATATAATCTATTTTAA-CAAAAATATAAAAAAATT-AACTTAAAATCAA
* * ** * * *
1389441 TAATGAAATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTCAGGGCTTGAGTGACTAGAAAT
191 TTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAAT
* * * * * * ** *
1389506 GGCCTTTT-TTTACTAATGGATGACTTATGATTCATATTTTTC--GA-AGTAGACATTTAATTAT
256 AGACTTTTCTTGACT-ATGGATGGCTTTTGCTT--TACGTTTCATGAGA-TAGACATTCAA-TAT
* * ** *
1389567 AATATATTTTAATTAAAAATATAAAAAAAATTTAACTTATAATCAATTATGAGGCTATCAAACCA
316 AATATATTTTAATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA
* * * * ** * * * ** * *
1389632 TTCAAAGTAAGTATTAAGG-TTTCAAAAGAATGGGTGACTATAAATAAACTTTTCTTGTGGACGA
381 TTTAAAGTGAGTAATAAGGCTTTCGAAAGCTTGAGTGACTATAAATAGACTTTTCTTATCAATGG
* * *
1389696 ATAGCTTTTTCTTCATGTTTCCTGAAG-CA-AGCACTT-AAATATAATCTATTTTAA-CTAAAAA
446 ATAGCTTTTGCTTCACGTTT-CTTAAGACAGA-CA-TTCAAATATAATCTATTTTAATC-AAAAA
* * * ** * * * * *
1389757 TTTTATAAAATTAAACTTAAAATTAGCAATCAGATTGTAAAACTATTTAAAGCGAGTAATAAGGT
507 -TTTAAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACAATTTAAAGCGAGCAATAAGGC
* * * * * *
1389822 TTTTAAAGGCTTGGGTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTTGCTTCACATTT
571 TTTCAAAGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGTCTTTTGATTCACATTT
* * *
1389887 TCTGAGGTAGACATT-A-TAATATAATCTATTTTAATCAAAAAT-TAAAAAAAATTCAACTTAAA
636 TCTGAGGAAGACATTCAGT--TATAATTTATTTTAATAAAAAATGT-AAAAAAATTCAACTTAAA
* * * * *
1389949 ATCAATAATGAGATTATAATACTATTTAAAGCGAA-TAATAAGGCTTTCAAAGGTTTGAGTGACA
698 ATCAATAATGAGATTATAAAACCATTTAAAG-TAAGTAATAAGGCTTTCAAAGGCTTGAGTGACT
* * *
1390013 AT-AAT-GAACTTTGCTTATCAGTGGATGGCTTTTGCTTCATGTTTTTCAAGGCAGACATTCAAA
762 ATAAATAG-ACTTT-CTTATCAATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAAA
*
1390076 TATAATTTATTTTAA-AAAAAATATA
825 TATAATATATTTTAACAAAAAATATA
*
1390101 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTATC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
* * * *
1390166 GAAGGCTTAAGTTACTATAAATGGACTTTTTTTTGTCAATAGAGGGCTTTTGCTTCATGTTTCTC
66 GAAGGCTTAAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTT-TC
* * * * *
1390231 AAGATAGGCATTCAAATATAATCTGTTTTAACCAAAATGTGAAAAAAATTAACTTAAAATCAATA
129 AAGATAGACATTCAAATATAATCTATTTTAACAAAAATAT-AAAAAAATTAACTTAAAATCAATT
* * *
1390296 ATGAGACTATAAAGCCATTTAAAGCAAGTAATAAGGCTATTGAAGGCTTGAGTGACTATAAATAG
193 ATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATAG
* * * * *
1390361 ACTTTTCTTGCCTATGGATGACTTTTACTTTACGTTTCATGAGACAGACATTCAGTCATAATATA
258 ACTTTTCTTGACTATGGATGGCTTTTGCTTTACGTTTCATGAGATAGACATTCAAT-ATAATATA
** * * *
1390426 TTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAAATATGAGATTATCAAAACTATTTAA
322 TTTTAATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATTTAA
* * ** * * *
1390491 AGGGAGTAATAAGGCTTTCGAAGGCTACAGTGACTATGAATGGACTTTTCTTATCAATGGATGGC
386 AGTGAGTAATAAGGCTTTCGAAAGCTTGAGTGACTATAAATAGACTTTTCTTATCAATGGATAGC
* * * * * * *
1390556 TTTTGCTTCACGTTTTTTAAGACAGACATTCTAATGTAATTTGTTTTAATGAAAAATTTAAAAGC
451 TTTTGCTTCACGTTTCTTAAGACAGACATTCAAATATAATCTATTTTAATCAAAAATTTAAAA-A
* * *
1390621 ATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAACG
515 ATTCAACTTAAAATCAATAATGAGATTATAAAACAATTTAAAGCGAGCAATAAGGCTTTCAAAGG
* * *
1390686 TTTGAGTGACTATAAATGGACTTTTCTTACCAATAGATAG-CTTTTGATTCATCTTTTTC-GAGG
580 CTTGAGTGACTATAAATGGACTTTTCTTACCAATGGAT-GTCTTTTGATTCA-CATTTTCTGAGG
* * * * * *
1390749 AAGGCATTCAGTTATAATTTATTTTAATTAAAAATGTGAACAAATTCAACTGAAAATCAATGATG
643 AAGACATTCAGTTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATG
* * * * *
1390814 AGATTGTAAAACCATTTCAAGTAAGTAATAAGGCTTTCAATGGCTGGAGTGACAATAAATAGACT
708 AGATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATAGAC-
** * * * * * * * *
1390879 TTTCTTGCCAATGAATGGGTTTT-TTTCATGTTT-TCTAAGGTAGATATTCAAATATAATCTGTT
772 TTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCTC-AAGGCAGACATTCAAATATAATATATT
* **
1390942 TTAACCAAAAACGTA
836 TTAACAAAAAATATA
* * * * * *
1390957 AAAAAATTCAACTTAAAATCAATTATCAGACTATAAAACCGTTTAAAGCAAGTAATAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
* * * * * *
1391022 GAAGGCTTGAGTGACTATAAATGAACTTTTGTTGTCAATGGATGACTTTTACTTCACGTTTTCCA
66 GAAGGCTTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTT-CA
* * *
1391087 AGATAAAGAGTCAAATATAATCTATTTTAACCAAAAATATAAAAAAATTAACTTAAAATCAATTA
130 AGATAGACATTCAAATATAATCTATTTTAA-CAAAAATATAAAAAAATTAACTTAAAATCAATTA
* ** * * *
1391152 TGAGATTATAAAACCATTTAAAGCTAGTAATAAGTTTTTTGAGGGCTTGAGTAACTATAAATGGA
194 TGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATAGA
* ** **
1391217 CTTTTCTT-ACTAATAGATGGCTTTTGC----C---TC-----AT-G---TTC--T-CGAGGTAT
259 CTTTTCTTGACT-ATGGATGGCTTTTGCTTTACGTTTCATGAGATAGACATTCAATATAATATAT
* *
1391262 TTTAATTAAAAATAT-AAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCGTTTAAAG
323 TTTAATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG
* * * * *
1391326 TGAATAATAAGGCTATCGAAAGTTTGAGTGACTATAAATAGATTTTTCTTA-CTAATGGATAGTT
388 TGAGTAATAAGGCTTTCGAAAGCTTGAGTGACTATAAATAGACTTTTCTTATC-AATGGATAGCT
* * * * *
1391390 TTTGCTTCACGTTTCCTAAGATAGATATTCAAATATAATCTATTTTAACCAAAAATGTAAAAAAA
452 TTTGCTTCACGTTTCTTAAGACAGACATTCAAATATAATCTATTTTAATCAAAAAT-TTAAAAAA
* * * * *
1391455 TTTAACTTAAATTCAATTATGAGATTATAAAATAATTTAAAGCGAGCAATGAGGCTTTCAAAGGC
516 TTCAACTTAAAATCAATAATGAGATTATAAAACAATTTAAAGCGAGCAATAAGGCTTTCAAAGGC
** * ** * *
1391520 TTGAGCAATTATAAAAAGACTTTTCTTACCAATGGATGTCTTTT-ACTTCACATTTCCTGAGGTA
581 TTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGTCTTTTGA-TTCACATTTTCTGAGGAA
* * * * *
1391584 GACAAT-AGTTATGATTTATTTTAATAAAAAATATAAAAAAATTCAGC-TAAAATCAATTATGAG
645 GACATTCAGTTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAG
* * * * * *
1391647 ACTATAAAACCATTTAAAGTGAGTAATAAGGGTTTCAATGACTTGAGTGACTATAAATAAACTTT
710 ATTATAAAACCATTTAAAGTAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATAGAC-TT
* * * * * *
1391712 TCTTACCAATGAATGGTTTTTGCTTCACGTTTCCTGAA-ACAGACATTCAAATATAATCTATTTT
774 TCTTATCAATGGATGGCTTTTGCTTCACGTTT-CTCAAGGCAGACATTCAAATATAATATATTTT
*
1391776 AATAAAAAATAT-
838 AACAAAAAATATA
*
1391788 AAAAAATTCAACTTAAAAT-GATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
* * * * * * *
1391852 GAAGACTTGAGTGACTGTAAA-GGAACTTTTCTTATCAATGAATGGCTTTT-CTTCATATTTTCG
66 GAAGGCTTAAGTGACTATAAATGG-ACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCA
* * ** * * * * *
1391915 AGAAAGGCATTCAGTTATAATATGTTTTAACTAAAAATGTAAAAAAGTTTAACTTAAAATCAATC
130 AGATAGACATTCAAATATAATCTATTTTAAC-AAAAATATAAAAAA-ATTAACTTAAAATCAATT
* * * * *
1391980 ATAAGATTACAAAACCATTTAAA-AAGAGTAATAAGTCTTTTGAAGGCTTGAATGACTATAAATA
193 ATGAGATTATAAAACCATTTAAAGCA-AGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATA
* * * * * * * * * *
1392044 AATTTTTCTTGCCAATGGA-GGTTTTTGCTTCACGTTTCTTGAGACAAACATTCAAATATAATCT
257 GACTTTTCTTGACTATGGATGGCTTTTGCTTTACGTTTCATGAGATAGACATTC-AATATAATAT
* * ** * * *
1392108 GTTTTTACAAAAAAT-TTAAAACAATTCAAC-TAAAATTCAATTATGAGATTATAAAACAATTTA
321 ATTTTAATTAAAAATATAAAAAAAATTCAACTTAAAA-TCAATTATGAGATTATAAAACCATTTA
* * * * ** ** ** *
1392171 AAGGGAGAAATAAGGCTTT-TAATACCTTGAGTGACTATAAAGGGCACTTGCCTTGCCAATAGAT
385 AAGTGAGTAATAAGGCTTTCGAA-AGCTTGAGTGACTATAAATAG-ACTTTTCTTATCAATGGAT
* * ** ** * * * * *
1392235 GGCTTTTGCTTCATGTTTCCCAAGGTAAACAATCAAATATAATTTATTTTAATCATAAATGTAAA
448 AGCTTTTGCTTCACGTTTCTTAAGACAGACATTCAAATATAATCTATTTTAATCAAAAATTTAAA
* * * *
1392300 ACAATTCAACTTAAATTCAATTATGAGATTATAAAACAATTTAAAGTGAGCAATAAGGCTTTTAA
513 A-AATTCAACTTAAAATCAATAATGAGATTATAAAACAATTTAAAGCGAGCAATAAGGCTTTCAA
* * * * * * *
1392365 GGGCTTGAGTGACTATAAATAGACTTTTCCTGCCAATGCATGTCTTTTGCTTCACATTTCCTGAG
577 AGGCTTGAGTGACTATAAATGGACTTTTCTTACCAATGGATGTCTTTTGATTCACATTTTCTGAG
* *
1392430 GCAGACATTCAGTTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
642 GAAGACATTCAGTTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATAAT
* ** ** * *
1392495 GAGATTATAAAACCATTTAAAGCT-AGTACTAAGTTTTTTGAGGGTTTGAGTGACTATAAATAGA
707 GAGATTATAAAACCATTTAAAG-TAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATAGA
* * * * * ** *
1392559 CTATTC-TCTCAAATGGATGGCTTTTACTTCACGTATCCCAAGGCAGACACTCAGTTATAATATG
771 CT-TTCTTATC-AATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAAATATAATATA
* * *
1392623 CTTTAACTAAAAATCTAA
834 TTTTAACAAAAAATAT-A
* * * * * * * *
1392641 AAAAAATT-AACCTAAAATCAATCATGAGATTATAAAATCATTCAAAACTAGTAGTAAGGCTTTC
1 AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
* * *
1392705 GAAGGCTTGAA-TGACTATAAATAGACTTTTCAT-ACTAATGGAT-GCTTTTGCTTCATGTTTTC
66 GAAGGCTT-AAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCATGTTTTC
* * * * * * **
1392767 TAA-AGCAGACATTTAATTATAATATATTTTAATTAAAAATATAAAAACATTTAGTTTAAAATCA
129 -AAGA-TAGACATTCAAATATAATCTATTTTAA-CAAAAATATAAAAA-AATTAACTTAAAATCA
* * * * * * ** *
1392831 ATTATGAGGTTTTCAAACCACTTAGAGCAAGTAATAAGG-TTTTCGAAAGAATGTA-TAACTATA
190 ATTATGAGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTT-GAAGGCTTG-AGTGACTATA
* * * * * * * *
1392894 TATAGACTTTTCTTGTCGATGAATGGCTTTTTCTTTATGTTTTTCA--AGGTAGACAGTTAAATA
253 AATAGACTTTTCTTGACTATGGATGGCTTTTGCTTTACG--TTTCATGAGATAGACA-TTCAATA
* * * * * *
1392957 TAATCTACTTTAATAAAAAATATAAAACAAATTCAACTTAAAATCAGTAATGAGATTATAAAACC
315 TAATATATTTTAATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC
* * * * * * *
1393022 ATTTAAAGCGAGTAATAAGGCTTGT-GAAGGTTTGAATGACTATAAAT-GAACTTTTTTTGTCAG
380 ATTTAAAGTGAGTAATAAGGCTT-TCGAAAGCTTGAGTGACTATAAATAG-ACTTTTCTTATCAA
* **
1393085 TGGATGGCTTTTGCTTCATATTTCTTAAGACAGA
443 TGGATAGCTTTTGCTTCACGTTTCTTAAGACAGA
1393119 TGTCAGTTAA
Statistics
Matches: 3129, Mismatches: 608, Indels: 268
0.78 0.15 0.07
Matches are distributed among these distances:
827 1 0.00
828 43 0.01
829 92 0.03
830 80 0.03
831 108 0.03
832 82 0.03
833 216 0.07
834 39 0.01
835 18 0.01
837 1 0.00
839 3 0.00
840 1 0.00
842 1 0.00
843 1 0.00
844 3 0.00
847 9 0.00
848 87 0.03
849 181 0.06
850 45 0.01
851 125 0.04
852 72 0.02
853 337 0.11
854 349 0.11
855 754 0.24
856 439 0.14
857 37 0.01
858 5 0.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (850 bp):
AAAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTC
GAAGGCTTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTCAA
GATAGACATTCAAATATAATCTATTTTAACAAAAATATAAAAAAATTAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATAGACT
TTTCTTGACTATGGATGGCTTTTGCTTTACGTTTCATGAGATAGACATTCAATATAATATATTTT
AATTAAAAATATAAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGA
GTAATAAGGCTTTCGAAAGCTTGAGTGACTATAAATAGACTTTTCTTATCAATGGATAGCTTTTG
CTTCACGTTTCTTAAGACAGACATTCAAATATAATCTATTTTAATCAAAAATTTAAAAAATTCAA
CTTAAAATCAATAATGAGATTATAAAACAATTTAAAGCGAGCAATAAGGCTTTCAAAGGCTTGAG
TGACTATAAATGGACTTTTCTTACCAATGGATGTCTTTTGATTCACATTTTCTGAGGAAGACATT
CAGTTATAATTTATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATAATGAGATTATA
AAACCATTTAAAGTAAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAATAGACTTTCTTATC
AATGGATGGCTTTTGCTTCACGTTTCTCAAGGCAGACATTCAAATATAATATATTTTAACAAAAA
ATATA
Found at i:1391353 original size:151 final size:150
Alignment explanation
Indices: 1391109--1391381 Score: 395
Period size: 151 Copynumber: 1.8 Consensus size: 150
1391099 AAATATAATC
1391109 TATTTTAACCAAAAATATAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
1 TATTTTAACCAAAAATATAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
* ** * * ** *
1391174 GCTAGTAATAAGTTTTTTGAGGGCTTGAGTAACTATAAATGGACTTTTCTTACTAATAGATGGCT
66 GCTAATAATAAGGCTATCGAAAGCTTGAGTAACTATAAATAGACTTTTCTTACTAATAGATGGCT
1391239 TTTGCCTCATGTTCTCGAGG
131 TTTGCCTCATGTTCTCGAGG
** *
1391259 TATTTTAATTAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCGTTTAA
1 TATTTTAACCAAAAATATAAAAAAA-TTAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * *
1391324 AG-TGAATAATAAGGCTATCGAAAGTTTGAGTGACTATAAATAGATTTTTCTTACTAAT
65 AGCT-AATAATAAGGCTATCGAAAGCTTGAGTAACTATAAATAGACTTTTCTTACTAAT
1391382 GGATAGTTTT
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
150 24 0.22
151 83 0.78
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.36
Consensus pattern (150 bp):
TATTTTAACCAAAAATATAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAA
GCTAATAATAAGGCTATCGAAAGCTTGAGTAACTATAAATAGACTTTTCTTACTAATAGATGGCT
TTTGCCTCATGTTCTCGAGG
Found at i:1391546 original size:171 final size:171
Alignment explanation
Indices: 1391259--1393118 Score: 1447
Period size: 171 Copynumber: 10.9 Consensus size: 171
1391249 GTTCTCGAGG
* * *
1391259 TATTTTAATTAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAACCGTTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * *
1391324 AGTGAATAATAAGGCTATCGAAA-GTTTGAGTGACTATAAATAGATTTTTCTTACTAATGGATAG
66 AGCGAGTAATAAGGCTTTC-AAAGGCTTGAGTGACTATAAAAAGACTTTTCTTACCAATGGATGG
* * * *
1391388 TTTTTGCTTCACGTTTCCTAAGATAGATATTCAAATATAATC
130 TTTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
** * * * **
1391430 TATTTTAACCAAAAATGTAAAAAAATTTAACTTAAATTCAATTATGAGATTATAAAATAATTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * ** *
1391495 AGCGAGCAATGAGGCTTTCAAAGGCTTGAGCAATTATAAAAAGACTTTTCTTACCAATGGAT-GT
66 AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAGACTTTTCTTACCAATGGATGGT
* * * ** * * * *
1391559 CTTTTACTTCACATTTCCTGAGGTAGACAAT-AGTTATGATT
131 -TTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
* *
1391600 TATTTTAATAAAAAATATAAAAAAATTCAGC-TAAAATCAATTATGAGACTATAAAACCATTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * *
1391664 AGTGAGTAATAAGGGTTTCAATGACTTGAGTGACTATAAATAA-ACTTTTCTTACCAATGAATGG
66 AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA-AAGACTTTTCTTACCAATGGATGG
* *
1391728 TTTTTGCTTCACGTTTCCTGAA-ACAGACATTCAAATATAATC
130 TTTTTGCTTCACGTTTCCT-AAGACAGACATTCAATTATAATA
* *
1391770 TATTTTAATAAAAAATAT-AAAAAATTCAACTTAAAAT-GATAATGAGATTATAAAACCATTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * *
1391833 AGCGAGTAATAAAGCTTTCGAAGACTTGAGTGACTGT-AAAGGAACTTTTCTTATCAATGAATGG
66 AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAG-ACTTTTCTTACCAATGGATGG
* ** * * * * *
1391897 CTTTT-CTTCATATTTTC-GAGAAAGGCATTCAGTTATAATA
130 TTTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
* * * * * * *
1391937 TGTTTTAACT-AAAAATGTAAAAAAGTTTAACTTAAAATCAATCATAAGATTACAAAACCATTTA
1 TATTTTAA-TAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
** * ** * * *
1392001 AAAAGAGTAATAAGTCTTTTGAAGGCTTGAATGACTATAAATAA-ATTTTTCTTGCCAATGGA-G
65 AAGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAA-AAGACTTTTCTTACCAATGGATG
* * * * *
1392064 GTTTTTGCTTCACGTTTCTTGAGACAAACATTCAAATATAATC
129 GTTTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
* * * * * *
1392107 TGTTTTTACAAAAAATTTAAAACAATTCAAC-TAAAATTCAATTATGAGATTATAAAACAATTTA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAA-TCAATTATGAGATTATAAAACCATTTA
* * * * ** ** * *
1392171 AAGGGAGAAATAAGGCTTTTAATA-CCTTGAGTGACTATAAAGGGCACTTGCCTTGCCAATAGAT
65 AAGCGAGTAATAAGGCTTTCAA-AGGCTTGAGTGACTATAAAAAG-ACTTTTCTTACCAATGGAT
* * * ** * * * *
1392235 GGCTTTTGCTTCATGTTTCCCAAGGTAAACAATCAAATATAATT
128 GGTTTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
* * * * * *
1392279 TATTTTAATCATAAATGTAAAACAATTCAACTTAAATTCAATTATGAGATTATAAAACAATTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * * * * * * *
1392344 AGTGAGCAATAAGGCTTTTAAGGGCTTGAGTGACTATAAATAGACTTTTCCTGCCAATGCAT-GT
66 AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAGACTTTTCTTACCAATGGATGGT
* * * * *
1392408 CTTTTGCTTCACATTTCCTGAGGCAGACATTCAGTTATAATT
131 -TTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
*
1392450 TATTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * ** ** * * * * *
1392515 AGCTAGTACTAAGTTTTTTGAGGGTTTGAGTGACTATAAATAGACTATTCTCT-CAAATGGATGG
66 AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAGACTTTTCT-TACCAATGGATGG
* * * * * * *
1392579 CTTTTACTTCACGTATCCCAAGGCAGACACTCAGTTATAATA
130 TTTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
** * * * * *
1392621 TGCTTTAACT-AAAAATCTAAAAAAAATT-AACCTAAAATCAATCATGAGATTATAAAATCATTC
1 TATTTTAA-TAAAAAATAT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT
* * * * * * * *
1392684 AAAACTAGTAGTAAGGCTTTCGAAGGCTTGAATGACTATAAATAGACTTTTCATACTAATGGAT-
64 AAAGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAGACTTTTCTTACCAATGGATG
* * * *
1392748 GCTTTTGCTTCATGTTTTCTAA-AGCAGACATTTAATTATAATA
129 GTTTTTGCTTCACGTTTCCTAAGA-CAGACATTCAATTATAATA
* * * ** * * * * *
1392791 TATTTTAATTAAAAATATAAAAACATTTAGTTTAAAATCAATTATGAGGTTTTCAAACCACTTAG
1 TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* * ** * * * ** * *
1392856 AGCAAGTAATAAGGTTTTCGAAA-GAATGTA-TAACTATATATAGACTTTTCTTGTCGATGAATG
66 AGCGAGTAATAAGGCTTTC-AAAGGCTTG-AGTGACTATAAAAAGACTTTTCTTACCAATGGATG
* * * ** * *
1392919 GCTTTTT-CTTTATGTTT-TTCAAGGTAGACAGTT-AAATATAATC
129 G-TTTTTGCTTCACGTTTCCT-AAGACAGACA-TTCAATTATAATA
* * *
1392962 TACTTTAATAAAAAATATAAAACAAATTCAACTTAAAATCAGTAATGAGATTATAAAACCATTTA
1 TATTTTAATAAAAAATATAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA
* * * * * ** *
1393027 AAGCGAGTAATAAGGCTTGT-GAAGGTTTGAATGACTAT-AAATGAACTTTTTTTGTCAGTGGAT
65 AAGCGAGTAATAAGGCTT-TCAAAGGCTTGAGTGACTATAAAAAG-ACTTTTCTTACCAATGGAT
* ** *
1393090 GGCTTTTGCTTCATATTTCTTAAGACAGA
128 GGTTTTTGCTTCACGTTTCCTAAGACAGA
1393119 TGTCAGTTAA
Statistics
Matches: 1349, Mismatches: 292, Indels: 95
0.78 0.17 0.05
Matches are distributed among these distances:
166 1 0.00
167 30 0.02
168 35 0.03
169 276 0.20
170 287 0.21
171 484 0.36
172 229 0.17
173 7 0.01
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
TATTTTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
AGCGAGTAATAAGGCTTTCAAAGGCTTGAGTGACTATAAAAAGACTTTTCTTACCAATGGATGGT
TTTTGCTTCACGTTTCCTAAGACAGACATTCAATTATAATA
Found at i:1395216 original size:28 final size:28
Alignment explanation
Indices: 1395168--1395238 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
1395158 CCTTCATTTC
* *
1395168 TCTCTTTTCTATCTTTCTTTCCTGTCTTT
1 TCTCTTTTCT-TCTTTCTTTCCTCTCCTT
1395197 TCTCTTTTCTTCTTTCTTTCCTCTCCTT
1 TCTCTTTTCTTCTTTCTTTCCTCTCCTT
*
1395225 TCTCTTTTATTCTT
1 TCTCTTTTCTTCTT
1395239 GGTTGTGGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 29 0.74
29 10 0.26
ACGTcount: A:0.03, C:0.30, G:0.01, T:0.66
Consensus pattern (28 bp):
TCTCTTTTCTTCTTTCTTTCCTCTCCTT
Found at i:1430560 original size:170 final size:170
Alignment explanation
Indices: 1430378--1430765 Score: 417
Period size: 170 Copynumber: 2.3 Consensus size: 170
1430368 ACTAATTCAT
* * * *
1430378 GCCTTCAAAAGCCTAATTACT-ACCTTTAAATAATTTTATAATCTCATAAATGAT-TTCAAATAA
1 GCCTTCAAAAGCCTAGTTACTCA-CTTTAAATGATTTTATAATCTAATAAATAATCTT-AAAT-A
* * * * *
1430441 AAAGTTT-T-TCATTTTTGGTCAAAACATATCATAATTTGATCTTTGGATTAAGGAACGTGAAGC
63 AAAGTTTATATCATTTTTGGTCAAAAAAAATCATAATTTGATCTTTGGATCAAGAAACGCGAAGC
* * *
1430504 AAATGCCATCCATTGATAAGAAAAGTCCATATATAGTCACTTAA
128 AAAAGCCATCCATTG-CAAGAAAAGTCCATATATAGCCACTTAA
* * * * * **
1430548 GCCTTCAAAAGCCTTGTTA-TCAATTTAAGTGATTTTATAATTTTATAAATAATCTTAAATTGAA
1 GCCTTCAAAAGCCTAGTTACTCACTTTAAATGATTTTATAATCTAATAAATAATCTTAAATAAAA
* * * * * * * *
1430612 TTTTATATCATTTTTGTTTAAAAAAAATCTTAGTTTGATGTTTGTATCGAGAAACGCGAAGCAAA
66 GTTTATATCATTTTTGGTCAAAAAAAATCATAATTTGATCTTTGGATCAAGAAACGCGAAGCAAA
* *
1430677 AGCCATCCATTGCAAGAAAAGTCCATTTATAGCCACTTAT
131 AGCCATCCATTGCAAGAAAAGTCCATATATAGCCACTTAA
* * *
1430717 GCCTTCAAATGCCTAGTTACTCACTTGAAATGGTTTTATAATCTAATAA
1 GCCTTCAAAAGCCTAGTTACTCACTTTAAATGATTTTATAATCTAATAA
1430766 TAAAAATTCT
Statistics
Matches: 177, Mismatches: 36, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
168 5 0.03
169 72 0.41
170 100 0.56
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (170 bp):
GCCTTCAAAAGCCTAGTTACTCACTTTAAATGATTTTATAATCTAATAAATAATCTTAAATAAAA
GTTTATATCATTTTTGGTCAAAAAAAATCATAATTTGATCTTTGGATCAAGAAACGCGAAGCAAA
AGCCATCCATTGCAAGAAAAGTCCATATATAGCCACTTAA
Found at i:1458281 original size:169 final size:168
Alignment explanation
Indices: 1458019--1458428 Score: 438
Period size: 169 Copynumber: 2.4 Consensus size: 168
1458009 TTATAACTTT
* * * * * *
1458019 ATAAATTA-TTGAAATTAAATTTTTT-ATTTTTGTTCAAACAGATTATAATTTAATATTT-CTAT
1 ATAAATGATTTGAAGTTGAATTTTTTCATTTTTGTTAAAACAGATCATAATTTGATATTTAC-AT
**
1458081 CAGGAAATGTGAAGCAAAATCCATCCATTGACATA-AAAAGTCCATTTATAGTCACTCATGCCTT
65 CAGGAAACATGAAGCAAAATCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTT
* * * ** * *
1458145 TCAAAGCCTAGTTGCT-TCTTTTAAATGCTTTCATAATTTT
129 TAAAAGCCTAGTTACTAGC-TTTAAATAATTTCATAATCTC
* *
1458185 ATAAATGATTT-TAGATTG-ATTTTTTCATTTTTGGTTAAAACATATCATAAATTTGATATTTAC
1 ATAAATGATTTGAAG-TTGAATTTTTTCATTTTT-GTTAAAACAGATCAT-AATTTGATATTTAC
* * * * ** *
1458248 ATCAGGCAACATGAAGCAAAATCTATTCATTGACAAGAAAATTTGATTTATAGTCACTCATGTCT
63 ATCAGGAAACATGAAGCAAAATCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
*
1458313 TTAAAAGCCTAGTTACTAGCTTTAAATAATTTTATAATCTC
128 TTAAAAGCCTAGTTACTAGCTTTAAATAATTTCATAATCTC
* *
1458354 ATAAATGATTTGAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGATCATAATTTGATGTTTAC
1 ATAAATGATTTGAAGTTGAA-TTTTTT-CA-TTTTTGTTAAAACAGATCATAATTTGATATTTAC
*
1458419 ATTAGGAAAC
63 ATCAGGAAAC
1458429 GTGCAACGAA
Statistics
Matches: 200, Mismatches: 31, Indels: 21
0.79 0.12 0.08
Matches are distributed among these distances:
166 15 0.08
167 10 0.05
168 13 0.06
169 110 0.55
170 5 0.03
171 27 0.14
172 15 0.08
173 5 0.03
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (168 bp):
ATAAATGATTTGAAGTTGAATTTTTTCATTTTTGTTAAAACAGATCATAATTTGATATTTACATC
AGGAAACATGAAGCAAAATCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTA
AAAGCCTAGTTACTAGCTTTAAATAATTTCATAATCTC
Found at i:1468581 original size:20 final size:20
Alignment explanation
Indices: 1468556--1468607 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
1468546 NNNNNNACTC
1468556 TAAATGATTTTATAATCTTA
1 TAAATGATTTTATAATCTTA
1468576 TAAATGATTTTATAATCTTA
1 TAAATGATTTTATAATCTTA
*
1468596 TATATGATTTTA
1 TAAATGATTTTA
1468608 AATTGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (20 bp):
TAAATGATTTTATAATCTTA
Found at i:1471058 original size:29 final size:29
Alignment explanation
Indices: 1471026--1471088 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
1471016 GATTCTACGG
1471026 GAGCATGCATGTTTCCGTTGAATTGACGT
1 GAGCATGCATGTTTCCGTTGAATTGACGT
*
1471055 GAGCATGCATGTTTCCGTTGAATTGATGT
1 GAGCATGCATGTTTCCGTTGAATTGACGT
1471084 GAGCA
1 GAGCA
1471089 AGTTGTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (29 bp):
GAGCATGCATGTTTCCGTTGAATTGACGT
Found at i:1476244 original size:171 final size:168
Alignment explanation
Indices: 1475936--1476244 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 168
1475926 TTGCTTACTC
*
1475936 TAAATGATTTTAAATTGAATTTTTTTAGTTTTGATTCAAACAGATTATAATTTGATGTTTACATT
1 TAAATGATTTTAAATTGAATTTTTTTAGTTTTGATTAAAACAGATTATAATTTGATGTTTACATT
* * * * * *
1476001 AACCAACGTGAAACAAAATCCATCCATCGACAAGAAAAGTCCATTTATAGTCATCCATGCCTTTG
66 AA-CAACATGAAACAAAAGCCATCCATCGACAAGAAAAGTCCATTTACAATCATCCATACCTTCG
*
1476066 CAAGCCTAATTACTCGCTTTAAATAATTTTATAATCTTA
130 AAAGCCTAATTACTCGCTTTAAATAATTTTATAATCTTA
*
1476105 TAAATGATTTTAAATTGAATTTTTTTATATTTTTTG-TTAAAACAGATTATAATTTGATGTTTAC
1 TAAATGATTTTAAATTGAA-TTTTTT-TA-GTTTTGATTAAAACAGATTATAATTTGATGTTTAC
* * * * * * *
1476169 ATCTGGA-AACATGTAGCAAAAGCTATCCATTGATAAGAAAAGT-CATTTTACAATTA-CTCATA
63 AT-T-AACAACATGAAACAAAAGCCATCCATCGACAAGAAAAGTCCA-TTTACAATCATC-CATA
1476231 CCTTCGAAAGCCTA
124 CCTTCGAAAGCCTA
1476245 GTTAGTTGCT
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
169 19 0.16
170 9 0.08
171 82 0.70
172 6 0.05
173 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.39
Consensus pattern (168 bp):
TAAATGATTTTAAATTGAATTTTTTTAGTTTTGATTAAAACAGATTATAATTTGATGTTTACATT
AACAACATGAAACAAAAGCCATCCATCGACAAGAAAAGTCCATTTACAATCATCCATACCTTCGA
AAGCCTAATTACTCGCTTTAAATAATTTTATAATCTTA
Found at i:1507130 original size:19 final size:18
Alignment explanation
Indices: 1507106--1507153 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
1507096 ACCTTATCTT
1507106 TTTCTTTTTCTTTTTCTCC
1 TTTCTTTTTCTTTTT-TCC
1507125 TTTC--TTTCTTTTTTCC
1 TTTCTTTTTCTTTTTTCC
1507141 TTTCTCTTTTCTT
1 TTTCT-TTTTCTT
1507154 CCTTTCTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.27
17 9 0.35
19 10 0.38
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTCTTTTTCTTTTTTCC
Found at i:1507134 original size:17 final size:16
Alignment explanation
Indices: 1507112--1507160 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
1507102 TCTTTTTCTT
1507112 TTTCTTTTTCTCCTTTC
1 TTTCTTTTT-TCCTTTC
1507129 TTTCTTTTTTCCTTTC
1 TTTCTTTTTTCCTTTC
1507145 --TCTTTTCTTCCTTTC
1 TTTCTTTT-TTCCTTTC
1507160 T
1 T
1507161 CAATTTGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.20
15 8 0.27
16 7 0.23
17 9 0.30
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTTTTTTCCTTTC
Found at i:1524279 original size:168 final size:169
Alignment explanation
Indices: 1523298--1524618 Score: 895
Period size: 170 Copynumber: 7.8 Consensus size: 169
1523288 NNNNNNNNNN
* * * * * * * * *
1523298 TTTTTCAATTTTAGTTAAAACAGCTCATAATTTGATCTTGGCATTAGAAAACATGAAGCAAAAAC
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATT-GAGAACGTGAAGCAAAAGC
* * ** * * * * *
1523363 TATCCATTGACAAGAAAAATGAAATTATAGTCACTCATGCCTTTGAAAGCTTTGTTACTTGCTCT
65 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTT
* * * * *
1523428 AGGTCGG-TTTAT-AAGTTTTAAGGTAATTTTAATTTGA-TT
130 AAGT-GGATTTATAAATTTTTAA-ATGATTTTAAATTGATTT
* * * * * * * * * * * *
1523467 TTTTTCAATTCTAGTTACAAGGGATTATAATTTGATATTTGTATAGGGAAATGTGAAGCAAAAAC
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAG-AACGTGAAGCAAAAGC
* * * * * * * * * ** **
1523532 CAGCCATTTACAATAAAAGTCTATTTAAAGTCGCTTATGCCCTT-TAAAGCCTTATTTTTCGGGT
65 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGCCTTGTTACTCGCTT
* * ********** *
1523596 TAGGTGGATTTATAAATATTTNNNNNNNNNNAAATTGATTG
129 TAAGTGGATTTATAAATTTTTAAATGATTTTAAATTGATTT
* * * * * *
1523637 TTTTTCATTTTCGATTAACATGGATCATAATTTGATGTGTGCATTGAGAAACATGAAGCAAAAGC
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAG-AACGTGAAGCAAAAGC
*** * * *** * *
1523702 CATCCATTGACAAGAAAAGTCCATTTATAGTTGTTTATGCCTTTGAAATTATTGTTATTTGCTTT
65 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTT
********** * *
1523767 NNNNNNNNNNATAACTTTTTAACTGATTTTAAATTGATTT
130 AAGTGGATTTATAAATTTTTAAATGATTTTAAATTGATTT
* * * ** * * *
1523807 CTTTTCATATTTGGTTAAAACGGATCATAATATGATGTTTGCATCAAAAAATGTGAAGCAACAGC
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCAT-TGAGAACGTGAAGCAAAAGC
* * * * * * * * *
1523872 TATCCATTGACAAAAAAAGTCTATTTATAGT-AGCTTATACCTTTGAAAGCCATGTTACTTGCTC
65 CATCCATTGACAAGAAAAGTCCATTTATAGTCA-CTCATGCCTTCGAAAGCCTTGTTACTCGCTT
* ** * * *
1523936 TAAGTTGATTTATACCTTTTTAAATAATTTGAAATTGAATT
129 TAAGTGGATTTATAAATTTTTAAATGATTTTAAATTGATTT
*
1523977 TTTTTCATATTTTGGATGT-AAACGGATCATAATTTGATGTTTGCATATGAAAACGTGAAGCAAA
1 TTTTTCAT-TTTTGG-T-TAAAACGGATCATAATTTGATGTTTGCAT-TGAGAACGTGAAGCAAA
* * * * * *
1524041 AGTCATCCATTAACAAGAAAAGTCCATTTATAGTCGCTCATACCTTCAAAAG-CTGTGTTACTCA
62 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTACTCG
* *
1524105 CTTTAAGTGCATTTATAAATTTTTAACTGATTTTAAATTGATTT
126 CTTTAAGTGGATTTATAAATTTTTAAATGATTTTAAATTGATTT
* * * * * ** *
1524149 TTTTTTATTTTTGGTTAAAACAGA-CATAATTTGATGTTTGCATTGGGAATGTAAAGTGAAGGCC
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAGAACGTGAAGCAAAAGCC
*
1524213 ATCCATTGACAA-AAGAAGTCCATTTATAGTTACTCATGCCTTCGAAAGCCTTGTTACTCGCTTT
66 ATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTT
* *
1524277 AAGTGGATTTATAACTTTTTTAAATGACTTTAAATTGAATCTT
130 AAGTGGATTTATAA-ATTTTTAAATGATTTTAAATTG-AT-TT
* * * * *
1524320 TTTTACATTTTTGTTTAAAACGGATCATAATTTGATGTTTACA-TCAGAAAGCATGAAGCAAAAG
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAG-AA-CGTGAAGCAAAAG
* * ** ** * * *
1524384 CCATCCATTAACAAGGAAAA-TCTATTTACGGTCGTTCATGCCTTCAAAAGCCTTGTTACTTGTT
64 CCATCCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT
* * *
1524448 TTTAGTGGA-TTATAAATTATT-AATCAATTTTAAATTGATTT
128 TTAAGTGGATTTATAAATTTTTAAAT-GATTTTAAATTGATTT
* * * * * * *
1524489 TTTTTCATTTTTTGTTAAAACGGATCATAATTTGATATTAGCATTGGGAACATAAAGCAAAAGCG
1 TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAGAACGTGAAGCAAAAGCC
* * ** * * *
1524554 ATCCATTGACAATAAAAGTCCATTTAAAGTCACTTTTGCCCTCGAAAGCCTTATTACTCACTTTA
66 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTA
1524619 GGNNNNNNNN
Statistics
Matches: 877, Mismatches: 248, Indels: 55
0.74 0.21 0.05
Matches are distributed among these distances:
167 6 0.01
168 138 0.16
169 190 0.22
170 268 0.31
171 51 0.06
172 156 0.18
173 64 0.07
174 2 0.00
175 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.38
Consensus pattern (169 bp):
TTTTTCATTTTTGGTTAAAACGGATCATAATTTGATGTTTGCATTGAGAACGTGAAGCAAAAGCC
ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTA
AGTGGATTTATAAATTTTTAAATGATTTTAAATTGATTT
Found at i:1524391 original size:341 final size:338
Alignment explanation
Indices: 1523777--1524618 Score: 966
Period size: 341 Copynumber: 2.5 Consensus size: 338
1523767 NNNNNNNNNN
* * * *
1523777 ATAACTTTTTAACTGATTTTAAATTGATTTCTTTTCATATTTGGTTAAAACGGATCATAATATGA
1 ATAAATTTTTAACTGATTTTAAATTGATTTTTTTTCATTTTTGGTTAAAACGGATCATAATTTGA
**** * * * *
1523842 TGTTTGCATCAAAAAATGTGAAGCAACAGCTATCCATTGACAAAAAAAGTCTATTTATAG-TAGC
66 TGTTTGCAT-TGGGAATGTAAAG-AAAAGCCATCCATTGAC-AAAAAAGTCCATTTATAGTTA-C
* * * * * *
1523906 TTATACCTTTGAAAGCCATGTTACTTGCTCTAAGTTGATTTATACCTTTTTAAATAATTTGAAAT
127 TTATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGATTTATACCTTTTTAAATAATTTGAAAT
* *
1523971 TGAATTTTTTTCATATTTTGGATGTAAACGGATCATAATTTGATGTTTGCATATGAAAACGTGAA
192 TGAATTTTTTTCATATTTTGGATGTAAACGGATCATAATTTGATGTTTACATATGAAAACATGAA
* *
1524036 GCAAAAGTCATCCATTAACAA-GAAAAGTCCATTTATAGTCGCTCATACCTTCAAAAG-CTGTGT
257 GCAAAAGCCATCCATTAACAAGGAAAA-TCCATTTACAGTCGCTCATACCTTCAAAAGCCT-TGT
1524099 TACTCACTTTAAGTGCATTT
320 TACTCACTTTAAGTGCA-TT
* *
1524119 ATAAATTTTTAACTGATTTTAAATTGATTTTTTTTTATTTTTGGTTAAAACAGA-CATAATTTGA
1 ATAAATTTTTAACTGATTTTAAATTGATTTTTTTTCATTTTTGGTTAAAACGGATCATAATTTGA
* * *
1524183 TGTTTGCATTGGGAATGTAAAGTGAAGGCCATCCATTGACAAAAGAAGTCCATTTATAGTTACTC
66 TGTTTGCATTGGGAATGTAAAG-AAAAGCCATCCATTGACAAAA-AAGTCCATTTATAGTTACTT
* *
1524248 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGATTTATAACTTTTTTAAATGACTTT-AAAT
129 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGATTTAT-ACCTTTTTAAAT-AATTTGAAAT
* *
1524312 TGAATCTTTTTTACAT-TTTT-G-TTTAAAACGGATCATAATTTGATGTTTACATCA-GAAAGCA
192 TGAAT-TTTTTT-CATATTTTGGATGT-AAACGGATCATAATTTGATGTTTACAT-ATGAAAACA
* * * *
1524373 TGAAGCAAAAGCCATCCATTAACAAGGAAAATCTATTTACGGTCGTTCATGCCTTCAAAAGCCTT
253 TGAAGCAAAAGCCATCCATTAACAAGGAAAATCCATTTACAGTCGCTCATACCTTCAAAAGCCTT
*** * *
1524438 GTTACTTGTTTTTAGTGGATT
318 GTTACTCACTTTAAGTGCATT
* * *
1524459 ATAAATTATTAA-TCAATTTTAAATTGATTTTTTTTCATTTTTTGTTAAAACGGATCATAATTTG
1 ATAAATTTTTAACT-GATTTTAAATTGATTTTTTTTCATTTTTGGTTAAAACGGATCATAATTTG
* * ** * * *
1524523 ATATTAGCATTGGGAACATAAAGCAAAAGCGATCCATTGACAATAAAAGTCCATTTAAAGTCACT
65 ATGTTTGCATTGGGAATGTAAAG-AAAAGCCATCCATTGACAA-AAAAGTCCATTTATAGTTACT
* * * *
1524588 TTTGCCCTCGAAAGCCTTATTACTCACTTTA
128 TATGCCTTCGAAAGCCTTGTTACTCGCTTTA
1524619 GGNNNNNNNN
Statistics
Matches: 426, Mismatches: 61, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
339 5 0.01
340 122 0.29
341 223 0.52
342 73 0.17
343 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (338 bp):
ATAAATTTTTAACTGATTTTAAATTGATTTTTTTTCATTTTTGGTTAAAACGGATCATAATTTGA
TGTTTGCATTGGGAATGTAAAGAAAAGCCATCCATTGACAAAAAAGTCCATTTATAGTTACTTAT
GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGATTTATACCTTTTTAAATAATTTGAAATTGAA
TTTTTTTCATATTTTGGATGTAAACGGATCATAATTTGATGTTTACATATGAAAACATGAAGCAA
AAGCCATCCATTAACAAGGAAAATCCATTTACAGTCGCTCATACCTTCAAAAGCCTTGTTACTCA
CTTTAAGTGCATT
Found at i:1525999 original size:15 final size:15
Alignment explanation
Indices: 1525979--1526008 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1525969 CTCAAACATT
1525979 TAACTCACAATCCAC
1 TAACTCACAATCCAC
1525994 TAACTCACAATCCAC
1 TAACTCACAATCCAC
1526009 ATACTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (15 bp):
TAACTCACAATCCAC
Found at i:1536458 original size:170 final size:170
Alignment explanation
Indices: 1536175--1536553 Score: 564
Period size: 170 Copynumber: 2.2 Consensus size: 170
1536165 NNNNNNNNNN
*
1536175 ACATCAAGTTATGATCTGTTTGAACTAAAAATGTAAAAAATATTCAACCTAAAAGCATTTAAAAA
1 ACATCAAGTTATGATCTGTTTGAACTAAAAATGTAAAAAATATTCAACCTAAAAACATTTAAAAA
* *
1536240 GTTATAAATACACTTCGAGCGATTAACAAGGCTTTTGAAGGCATGAGCGACTATAAATAGACTTT
66 GTTATAAATACACTTCGAGCGAGTAACAAGGCTTTCGAAGGCATGAGCGACTATAAATAGACTTT
1536305 TCTTGTCAATAGATGATCTCACTTCACATTCTTGATGCAC
131 TCTTGTCAATAGATGATCTCACTTCACATTCTTGATGCAC
* *
1536345 ACATCAAGTTATGATTTGTTTGAACTAAAAATGTAAAAAATATTTAACCTAAAAACATTTAAAAA
1 ACATCAAGTTATGATCTGTTTGAACTAAAAATGTAAAAAATATTCAACCTAAAAACATTTAAAAA
* *
1536410 GTTATAAATCCACTTCGAGCGAGTAACAAGGCTTTCGAAGGTATGAGCGACTATAAATAGACTTT
66 GTTATAAATACACTTCGAGCGAGTAACAAGGCTTTCGAAGGCATGAGCGACTATAAATAGACTTT
* * * ** *
1536475 TCTTGTCAATGGATGA-CTTTAGCTTCATATTTCTCAATGCAA
131 TCTTGTCAATAGATGATC-TCA-CTTCACA-TTCTTGATGCAC
** * *
1536517 ACATCAAAATAGGATCTGTTTTAACTAAAAATG-AAAA
1 ACATCAAGTTATGATCTGTTTGAACTAAAAATGTAAAA
1536554 CAAAANNNNN
Statistics
Matches: 188, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
169 1 0.01
170 140 0.74
171 10 0.05
172 37 0.20
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (170 bp):
ACATCAAGTTATGATCTGTTTGAACTAAAAATGTAAAAAATATTCAACCTAAAAACATTTAAAAA
GTTATAAATACACTTCGAGCGAGTAACAAGGCTTTCGAAGGCATGAGCGACTATAAATAGACTTT
TCTTGTCAATAGATGATCTCACTTCACATTCTTGATGCAC
Found at i:1542672 original size:24 final size:24
Alignment explanation
Indices: 1542613--1542674 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
1542603 GCCATGGTCT
*
1542613 GTGATATATGTGGCAAGGTCACAA
1 GTGATATATGTGGCAAGGCCACAA
* **
1542637 GTGGATATATGTGGCTAGGCCGTAA
1 GT-GATATATGTGGCAAGGCCACAA
1542662 GTGATATATGTGG
1 GTGATATATGTGG
1542675 TTGCAACCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 13 0.39
25 20 0.61
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (24 bp):
GTGATATATGTGGCAAGGCCACAA
Found at i:1547317 original size:21 final size:21
Alignment explanation
Indices: 1547291--1547340 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
1547281 TTTTCATATT
1547291 TTTGATGTAAACTGATCATAA
1 TTTGATGTAAACTGATCATAA
1547312 TTTGATGTAAACTGATCATAA
1 TTTGATGTAAACTGATCATAA
1547333 TTTGATGT
1 TTTGATGT
1547341 TTGTATCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (21 bp):
TTTGATGTAAACTGATCATAA
Found at i:1555066 original size:21 final size:19
Alignment explanation
Indices: 1555041--1555080 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
1555031 TTGTTACTCA
*
1555041 TTTTAAGTGCATTTTATAATT
1 TTTTAACTG-ATTTTA-AATT
1555062 TTTTAACTGATTTTAAATT
1 TTTTAACTGATTTTAAATT
1555081 GATTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 6 0.33
21 8 0.44
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTAACTGATTTTAAATT
Found at i:1566146 original size:171 final size:169
Alignment explanation
Indices: 1565851--1566367 Score: 574
Period size: 171 Copynumber: 3.0 Consensus size: 169
1565841 NNNNNNNNNN
* *
1565851 GATGACCTTCGCTTCACATTCTTGATGTGCACATCAAGTTATGATCTGTTTGAACTAAAAATGCA
1 GATGACCTTCGCTTCACATTCTTGAT-TGCACATCAAGATATGATCAGTTTGAACTAAAAATG-A
* * * * *
1565916 AAAAATATTCAACCTAAAAACATTTAAAAAGTTATAAATCTACTTCGAGCGATTAACAAGGCTTC
64 AAACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTAGAGTGATTAACAAGGCTTT
*
1565981 CGAAAACATGAACGACTATAAATAGACTTTTCTTGTAAATA
129 CGAAAGCATGAACGACTATAAATAGACTTTTCTTGTAAATA
* *
1566022 GATGACCTTCGCTTCACATTCTTGATTCGCACATCAAGCTATGATCAGTTTGAACCAAAAATGTA
1 GATGACCTTCGCTTCACATTCTTGATT-GCACATCAAGATATGATCAGTTTGAACTAAAAATG-A
* * *
1566087 AAACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTTGAGTGAATAACAAGGGTTT
64 AAACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTAGAGTGATTAACAAGGCTTT
* * * *
1566152 CGAAGGCATGAGCGACTATAAATAGACTTTTCTTGTCAATG
129 CGAAAGCATGAACGACTATAAATAGACTTTTCTTGTAAATA
* * * ** * * * *
1566193 GATAACTTTAGCTTCATGTT-TCTCATTGCAAACATCAAAATAGGAT-ATGTTTTAACTAAAAAT
1 GATGACCTTCGCTTCACATTCT-TGATTGC--ACATCAAGATATGATCA-GTTTGAACTAAAAAT
* * ** * * * *
1566256 GAAAACAAAATCAATTTAAAATCAATTAAAAATTTATAAATCCACTTAAAGTGATTAACAAGGCT
62 GAAAACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTAGAGTGATTAACAAGGCT
* * * *
1566321 TTC-AAAGGCATGAAAGACTATAAATGGA-TATTTCTTGTTAATT
127 TTCGAAA-GCATGAACGACTATAAATAGACT-TTTCTTGTAAATA
1566364 GATG
1 GATG
1566368 GCTTTTGCTT
Statistics
Matches: 294, Mismatches: 45, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
170 7 0.02
171 261 0.89
172 26 0.09
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (169 bp):
GATGACCTTCGCTTCACATTCTTGATTGCACATCAAGATATGATCAGTTTGAACTAAAAATGAAA
ACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTAGAGTGATTAACAAGGCTTTCG
AAAGCATGAACGACTATAAATAGACTTTTCTTGTAAATA
Found at i:1566401 original size:171 final size:170
Alignment explanation
Indices: 1565898--1566573 Score: 551
Period size: 171 Copynumber: 3.9 Consensus size: 170
1565888 GTTATGATCT
* ** * * * *
1565898 GTTTGAACTAAAAATGCAAAA-AATATTCAACCTAAAAACATTTAAAAAGTTATAAATCTACTTC
1 GTTTTAACTAAAAATG-AAAACAA-ATTCAATTTAAAATCAATTAAAAAGTTATAAATCCACTTA
* * * * * * * *
1565962 GAGCGATTAACAAGGCTTCCGAAA-ACATGAACGACTATAAATAGACTTTTCTTGTAAATAGATG
64 AAGTGAATAACAAGGCTTTC-AAAGGCATGAGCGACTATAAATAGACTTTTCTTGTTAATGGATG
* * * ** ** * ** *
1566026 ACCTTCGCTTCACATTCTTGATTCGC--ACATCAAGCTATGAT-C
128 GCTTTTGCTTCATGTT-TCCAAT-GCAAACATCAAAATAGGATAC
* * * ** * * *
1566068 AGTTTGAACCAAAAATGTAAAACATATTCAACCTAAAAACATTTAAAAAGTTATAAATCCACTTT
1 -GTTTTAACTAAAAATG-AAAACAAATTCAATTTAAAATCAATTAAAAAGTTATAAATCCACTTA
* * * * **
1566133 GAGTGAATAACAAGGGTTTCGAAGGCATGAGCGACTATAAATAGACTTTTCTTGTCAATGGATAA
64 AAGTGAATAACAAGGCTTTCAAAGGCATGAGCGACTATAAATAGACTTTTCTTGTTAATGGATGG
* * *
1566198 CTTTAGCTTCATGTTTCTCATTGCAAACATCAAAATAGGATAT
129 CTTTTGCTTCATGTTTC-CAATGCAAACATCAAAATAGGATAC
* *
1566241 GTTTTAACTAAAAATGAAAACAAAATCAATTTAAAATCAATTAAAAATTTATAAATCCACTTAAA
1 GTTTTAACTAAAAATGAAAACAAATTCAATTTAAAATCAATTAAAAAGTTATAAATCCACTTAAA
* ** * *
1566306 GTGATTAACAAGGCTTTCAAAGGCATGAAAGACTATAAATGGA-TATTTCTTGTTAATTGATGGC
66 GTGAATAACAAGGCTTTCAAAGGCATGAGCGACTATAAATAGACT-TTTCTTGTTAATGGATGGC
* * * *
1566370 TTTTGCTTCATGTTTCCAAATGCACACATCAAATTATGATCC
130 TTTTGCTTCATGTTTCC-AATGCAAACATCAAAATAGGATAC
* * * *
1566412 GTTTTAATTAAAAAAG-AAACAGAATTCAATTTAAAATCAATGAAAAAGTTATAAATCCACCTAA
1 GTTTTAACTAAAAATGAAAACA-AATTCAATTTAAAATCAATTAAAAAGTTATAAATCCACTTAA
* * * * * * * *
1566476 AG-CAAGTAACAACGCTTTTAAGGGCAT-ATGCGATTTTAAATAGACTTTTATTATTAATGGATG
65 AGTGAA-TAACAAGGCTTTCAAAGGCATGA-GCGACTATAAATAGACTTTTCTTGTTAATGGATG
* *
1566539 GCTTTTGCTTCATGTTTCCCAATGCCAATATCAAA
128 GCTTTTGCTTCATGTTT-CCAATGCAAACATCAAA
1566574 TTATGATCTA
Statistics
Matches: 417, Mismatches: 75, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
170 14 0.03
171 373 0.89
172 30 0.07
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (170 bp):
GTTTTAACTAAAAATGAAAACAAATTCAATTTAAAATCAATTAAAAAGTTATAAATCCACTTAAA
GTGAATAACAAGGCTTTCAAAGGCATGAGCGACTATAAATAGACTTTTCTTGTTAATGGATGGCT
TTTGCTTCATGTTTCCAATGCAAACATCAAAATAGGATAC
Found at i:1587840 original size:18 final size:19
Alignment explanation
Indices: 1587807--1587843 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
1587797 GTTACTCGCT
1587807 TTAACTGGATTATAAATTA
1 TTAACTGGATTATAAATTA
*
1587826 TTAACT-GATTTTAAATTA
1 TTAACTGGATTATAAATTA
1587844 ATTTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (19 bp):
TTAACTGGATTATAAATTA
Found at i:1617153 original size:169 final size:169
Alignment explanation
Indices: 1616851--1617209 Score: 382
Period size: 169 Copynumber: 2.1 Consensus size: 169
1616841 NNNNNNNNNN
* * * *
1616851 TAACTGATTTTAAATTGATTTTTTTTCATATTAGTTAAAATAGGCCATAATTTGATATTTGCATT
1 TAACTGATTTTAAATTGATTTTTTCTCATATTAGTTAAAACAGACCATAATTTGATATTTGCACT
* * *** ** ** *
1616916 GGAAAACATGTAGCAAAAGGTATCCATTCACAAGAAAAGTCCATGTATAGTTGCTCATGCTTTCA
66 AGAAAACATGAAGCAAAAACCATCCATTCACAAGAAAAGTCCATGTATAGTCACTCACACCTTCA
* ** * *
1616981 AAAGCCTTGTTACTTTCTTTAAATGAATTTATAAATTTT
131 AAAGCCTTATTACTCGCTTGAAATGAATTTATAAACTTT
* * *
1617020 TAACTGATTTTAAATTGATTTTTTCTCATTTTTGGTTAAAACAGATCATAATTTGATATTTGCAC
1 TAACTGATTTTAAATTGATTTTTTCTCA-TATTAGTTAAAACAGACCATAATTTGATATTTGCAC
** *
1617085 TAGAAAATGTGAAGCAAAAACCATCCATTGA-AAGGAAAAGTCCAT-TACT-GTCACTCACACCT
65 TAGAAAACATGAAGCAAAAACCATCCATTCACAA-GAAAAGTCCATGTA-TAGTCACTCACACCT
** * * * *
1617147 TCAAAAGTTTTATTGCTCGCTTGAGATGGATTTATAACCTTT
128 TCAAAAGCCTTATTACTCGCTTGAAATGAATTTATAAACTTT
*
1617189 CAACTGATTTTAAATTGATTT
1 TAACTGATTTTAAATTGATTT
1617210 NNNNNNNNNN
Statistics
Matches: 155, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
169 90 0.58
170 65 0.42
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (169 bp):
TAACTGATTTTAAATTGATTTTTTCTCATATTAGTTAAAACAGACCATAATTTGATATTTGCACT
AGAAAACATGAAGCAAAAACCATCCATTCACAAGAAAAGTCCATGTATAGTCACTCACACCTTCA
AAAGCCTTATTACTCGCTTGAAATGAATTTATAAACTTT
Found at i:1625306 original size:17 final size:17
Alignment explanation
Indices: 1625284--1625317 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1625274 GGAAATGTGA
*
1625284 AGCAAAAGCTATCTATT
1 AGCAAAAGATATCTATT
1625301 AGCAAAAGATATCTATT
1 AGCAAAAGATATCTATT
1625318 TATAGTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (17 bp):
AGCAAAAGATATCTATT
Found at i:1638032 original size:336 final size:340
Alignment explanation
Indices: 1637574--1638315 Score: 793
Period size: 336 Copynumber: 2.2 Consensus size: 340
1637564 CTTGTTAGTC
* * * * *
1637574 GCTTGAGGTTGATTTATAATTTTTGTAA-TGATTTTAGATTGAATGTGTTTTACATTTTTCATTA
1 GCTTGAAGTGGATTTATAATTTTT-TAATTGATTTTAAATTGATTTTGTTTT-CATTTTT-ATTA
* * * *
1637638 AAACGCATCGTAATTTGATGTTTGCATTGAGAAACATCAAGCCAAAGCAATCCATTGACAAAAAA
63 AAACACATCATAATTTGATATTTGCATTGAGAAACATCAAGCAAAAGCAATCCATTGACAAAAAA
* * * * * * **
1637703 ACTCCGTTTATAGTCACTTATGCTTTCAAAAGTCTTGTTACTCGCTTTAAGTAGAATTATAGCTT
128 ACTCCATGTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAGTAGAATTATAAATT
*
1637768 TATAAATGATTTTAAATTAA-ATTTTTT-TATAGTTTTGGTTAAAATAGATCATAATTTGATATT
193 TATAAATGATTTTAAATTAATATTTTTTCTATAGTTTTGGTTAAAACAGATCATAATTTGATATT
*** **
1637831 AGCA-TGGGAAACATGAAGCAAAGGGCACCCATTGACAAGAAAAGTCC-A-T-TCACTCATACCT
258 AGCACCAAGAAACATGAAGCAAAAAGCACCCATTGACAAGAAAAGTCCTATTGTCACTCATACCT
* *
1637892 TTAAAACCCTTCTTACTA
323 TCAAAACCCTTATTACTA
*
1637910 GCTTTAAGTGGATTTATAAGTTTTTTAATTGATTTTAAATTGATTTTGTTTTCATTTTTGATTAA
1 GCTTGAAGTGGATTTATAA-TTTTTTAATTGATTTTAAATTGATTTTGTTTTCATTTTT-ATTAA
* * * ** * *
1637975 AACATATCATAATTTGATATTTTCATT-AGAAAACGTGTAGTAAAAGGC-ATCCATTGACAAGAA
64 AACACATCATAATTTGATATTTGCATTGAG-AAACATCAAGCAAAA-GCAATCCATTGACAAAAA
* * * * * *
1638038 AAGTCTATGTATAGTCGCTCAAGCCTTCAAAAGCCTTGTTCCTCGCTTTAAGTGGATTTATAAAT
127 AACTCCATGTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAGTAGAATTATAAAT
* * * * * * *
1638103 TTTTAATTGATTTTAAATTAATTTTTTTTCTTTATTTTTGGTTATAACAGATCATAATTTGATGT
192 TTATAAATGATTTTAAATTAATATTTTTTCTATAGTTTTGGTTAAAACAGATCATAATTTGATAT
* * * * * *
1638168 TTGCACCAAGAAACATGAAGTAAAAATCATCCATTGATAAGAAAAGTCCATTATTGTCACTCATG
257 TAGCACCAAGAAACATGAAGCAAAAAGCACCCATTGACAAGAAAAGTCC--TATTGTCACTCATA
* ** * *
1638233 CCTTCGAAAGTCTTATTGCTT
320 CCTTCAAAACCCTTATTACTA
* * *
1638254 GCTTGAGGTGGATTTCTAACTTTTTAATTGATTTTAAATTGATTTT-TTTTCATTTTTATTAA
1 GCTTGAAGTGGATTTATAATTTTTTAATTGATTTTAAATTGATTTTGTTTTCATTTTTATTAA
1638316 GAGAGGATCA
Statistics
Matches: 332, Mismatches: 62, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
335 2 0.01
336 147 0.44
337 33 0.10
338 34 0.10
339 34 0.10
341 5 0.02
342 12 0.04
343 27 0.08
344 38 0.11
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (340 bp):
GCTTGAAGTGGATTTATAATTTTTTAATTGATTTTAAATTGATTTTGTTTTCATTTTTATTAAAA
CACATCATAATTTGATATTTGCATTGAGAAACATCAAGCAAAAGCAATCCATTGACAAAAAAACT
CCATGTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAGTAGAATTATAAATTTAT
AAATGATTTTAAATTAATATTTTTTCTATAGTTTTGGTTAAAACAGATCATAATTTGATATTAGC
ACCAAGAAACATGAAGCAAAAAGCACCCATTGACAAGAAAAGTCCTATTGTCACTCATACCTTCA
AAACCCTTATTACTA
Done.