Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399757.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_300.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9378
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.29
Warning! 1981 characters in sequence are not A, C, G, or T
Found at i:844 original size:171 final size:171
Alignment explanation
Indices: 647--1098 Score: 468
Period size: 171 Copynumber: 2.6 Consensus size: 171
637 NNNNNNNNNN
* * * * **
647 AGAAACGTGAAAGAAAATGAATTCATTTACAAGAAAGGTCTATTTATAGTCACTTATTCATTCAA
1 AGAAACATGAAAGAAAAGGCATTCATTGACAAGAAAAATCTATTTATAGTCACTTATTCATTCAA
*
712 AAGCCCTATTACTCACTTTAAATGGATTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTT
66 AAGCCCTATTACTCATTTTAAATGGATTTATAATCTCAAAATTGATTTTAAGTTCAA-TTTTTTT
* * ** *
777 ACTTTCTGA-TTGAAAACAGGTTATTA-TGAATGTCTACAG-CA
130 ACATTATGAGTT-AAAACAGACTATAATTGAATGTCTA-AGTCA
* * * * **
818 AGTAACAT-AAAGAAAAAGGCATTCATTGGCAAGAGAAAT-TCATTTATAGTCTCTTATTTTTTC
1 AGAAACATGAAAG-AAAAGGCATTCATTGACAAGAAAAATCT-ATTTATAGTCACTTATTCATTC
* * * *
881 AAAAG-CCTAATTACTCGTTTTAAAT-AATTTTATAATCTCATAATTGATTTTACGTTCAATTTT
64 AAAAGCCCT-ATTACTCATTTTAAATGGA-TTTATAATCTCAAAATTGATTTTAAGTTCAATTTT
* * **
944 TTTACATTATTAGTTAAAACAGACTATAATTGAATGTCTATGTTG
127 TTTACATTATGAGTTAAAACAGACTATAATTGAATGTCTAAGTCA
* * * * * *
989 AGAAACATGAAAGAAAAGGTATTTATTGAGAAGAAAAATCTCTTTATAGTCACTCATTCCTTCAA
1 AGAAACATGAAAGAAAAGGCATTCATTGACAAGAAAAATCTATTTATAGTCACTTATTCATTCAA
* * * *
1054 AAGCCTTAGTACTCATTTTAAATGGTTTTATTATCTCAAAATTGA
66 AAGCCCTATTACTCATTTTAAATGGATTTATAATCTCAAAATTGA
1099 NNNNNNNNNN
Statistics
Matches: 226, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
170 34 0.15
171 185 0.82
172 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (171 bp):
AGAAACATGAAAGAAAAGGCATTCATTGACAAGAAAAATCTATTTATAGTCACTTATTCATTCAA
AAGCCCTATTACTCATTTTAAATGGATTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTA
CATTATGAGTTAAAACAGACTATAATTGAATGTCTAAGTCA
Found at i:3230 original size:169 final size:168
Alignment explanation
Indices: 2306--3240 Score: 596
Period size: 170 Copynumber: 5.5 Consensus size: 168
2296 ACATTTTTGG
* * * * * ** *
2306 TTAAGACAAACTATAATTGAATGTCTACCAT-GAGAAACATGTAGAAAAAAGCATTCATTT-ATA
1 TTAAAACAGACTATAATTGAATGCCTGCC-TCAAGAAACATGTAGAAAAACCCATTTATTTGA-A
* * * * * **
2369 AGAAAAGTTCATTTATAGTCTCCCATTCCTTCAAAAACCTTATTATTCACTTTAAAT-AGTTTTA
64 AGAAAAGTCCATTTATAGTCTCTCACTCCTTCAAAAACTTTATTACTCGTTTTAAATGA-TTTTA
* ******** * *
2433 TAATCTTATAATTGATTTTNNNNNNNNNNATTTTTACTTTTTTGA
128 TAATCTCATAATTGATTTT--AAAATGAAATTTTT--TATTTTCA
* * * * * * ** ** * *
2478 TTAAAACAGATTATAATTGAATGTCTACATTAAGAAACGTAAAGCAAAAA-GTATTTATTGGCAA
1 TTAAAACAGACTATAATTGAATGCCTGCCTCAAGAAACATGTAG-AAAAACCCATTTATTTGAAA
* * * * * * *
2542 GAAAAGTCCATTTATAATCAC-CTATTCCTTCAAAAGCCTTATTATTCGTTTTAAATGGTTTTAT
65 GAAAAGTCCATTTATAGTCTCTC-ACTCCTTCAAAAACTTTATTACTCGTTTTAAATGATTTTAT
* ********** *
2606 AATCTCATGATTGATTTNNNNNNNNNNTTTTTTACATTTCACA
129 AATCTCATAATTGATTTTAAAATGAAATTTTTT--ATTT-TCA
* * * * * *
2649 TTAAAACAAACTATAATTGAATGCTTGTCTTGAA-AAATATGTAGAAAAACTCATTTATTT-AAG
1 TTAAAACAGACTATAATTGAATGCCTG-CCTCAAGAAACATGTAGAAAAACCCATTTATTTGAA-
* * * * *
2712 AGAAAAGTCCATTTATAGTCT-TCCACTCCTTCACAAA-TCCTATTACTAGCTTTAAATGCTTTT
64 AGAAAAGTCCATTTATAGTCTCT-CACTCCTTCAAAAACT-TTATTACTCGTTTTAAATGATTTT
* * * * *
2775 CTAATCTCATAATTGATTTT-AAGTAGAAGTTTTTAAATTTTTCG
127 ATAATCTCATAATTGATTTTAAAAT-GAAATTTTT-TA-TTTTCA
* * * * * ** * *
2819 TTAAAACAAACTATAATTGAATGCATGCCTCGAGAGACATATAGAAAAAGTCATTTATTTGGAAT
1 TTAAAACAGACTATAATTGAATGCCTGCCTCAAGAAACATGTAGAAAAACCCATTTATTTGAAAG
* * * * * * * *
2884 AAAAGTCTATTTATAGTCTCTTATTCCTTCAAAAGCCTTATTAGTCATTTTAAATAATTTTATAA
66 AAAAGTCCATTTATAGTCTCTCACTCCTTCAAAAACTTTATTACTCGTTTTAAATGATTTTATAA
******* * * *
2949 TCTCATAATTGATTTTAANNNNNNNNNNTTATATATTTT-T
131 TCTCATAATTGATTTTAA---AATGAAATTTTTTATTTTCA
* * *
2989 TTAAAACAGACTATAATTGAATGTCTGCCTCGAGAAACATGTAGAAACACCCATTTATTTGAAAG
1 TTAAAACAGACTATAATTGAATGCCTGCCTCAAGAAACATGTAGAAAAACCCATTTATTTGAAAG
* *
3054 AAAAGTCCATTTATAGTCTCTCACTCCTTTAAAAACTTTATTACTCGTTTTAAATGGTTTTATAA
66 AAAAGTCCATTTATAGTCTCTCACTCCTTCAAAAACTTTATTACTCGTTTTAAATGATTTTATAA
3119 TCTCATAATTGATTTTAAAATGAAATTTTTTATTATTCA
131 TCTCATAATTGATTTTAAAATGAAATTTTTTATT-TTCA
* * ** *
3158 TTAAAATAGATTATAATTGAATGCCTGCCTCAAGAAATGTGTAGAAAAACCCATTTATTTGGAAG
1 TTAAAACAGACTATAATTGAATGCCTGCCTCAAGAAACATGTAGAAAAACCCATTTATTTGAAAG
3223 AAAAGTCCATTTATAGTC
66 AAAAGTCCATTTATAGTC
3241 NNNNNNNNNN
Statistics
Matches: 597, Mismatches: 139, Indels: 57
0.75 0.18 0.07
Matches are distributed among these distances:
167 7 0.01
168 3 0.01
169 78 0.13
170 265 0.44
171 118 0.20
172 118 0.20
173 8 0.01
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.38
Consensus pattern (168 bp):
TTAAAACAGACTATAATTGAATGCCTGCCTCAAGAAACATGTAGAAAAACCCATTTATTTGAAAG
AAAAGTCCATTTATAGTCTCTCACTCCTTCAAAAACTTTATTACTCGTTTTAAATGATTTTATAA
TCTCATAATTGATTTTAAAATGAAATTTTTTATTTTCA
Found at i:6144 original size:170 final size:168
Alignment explanation
Indices: 5643--6149 Score: 499
Period size: 170 Copynumber: 3.0 Consensus size: 168
5633 NNNNNNNNAG
* *
5643 AGACTATAAATAGACTTTTCTT-TCAAATAAATGGGTTTTTCTACATGTTTCTT-GAGACAGACA
1 AGACTATAAATAGACTTTTCTTCT-AAATAAAT-GGTTTTTCTACACGTTT-TTCGAGACAAACA
5706 TTCAATTATAGTTTGTTTT-A-ATGAAAACTATAAAAAATTCAACTTAAAATCAATTATGAGATT
63 TTCAATTATAGTTTGTTTTAATATG-AAA-TATAAAAAATTCAACTTAAAATCAATTATGAGATT
********* * * * *
5769 NNNNNNNNNNTTAAAATGACTAATAAGGTTTTTAAAAGAATAGG
126 -AGAAAACATTTAAAACGAGTAATAAGGTTTTTGAAAGAATAGA
* * * **
5813 AGACTATAAATAGACTTTTTTTCTAAATAAATGGCTTTTTCTACACGTCTCTCGAGACATGCATT
1 AGACTATAAATAGACTTTTCTTCTAAATAAATGG-TTTTTCTACACGTTTTTCGAGACAAACATT
* * * ** * *
5878 CAATAATGGTCTGTTTTAATAAAAAATTTAAAAAATTCTACTTAAAATCAATTATGAGATTAGAA
65 CAATTATAGTTTGTTTTAATATGAAATATAAAAAATTCAACTTAAAATCAATTATGAGATTAGAA
* * * *
5943 AAGCATTTAAAGCTAGTAAT-TGGATTTTTGAAGGAAT-GAA
130 AA-CATTTAAAACGAGTAATAAGG-TTTTTGAAAGAATAG-A
*
5983 AGACTATAAATAGAC-TTTCTTCTAAATAAATGAGTTTTTCTACACGTTTTTCAAGACAAACATT
1 AGACTATAAATAGACTTTTCTTCTAAATAAATG-GTTTTTCTACACGTTTTTCGAGACAAACATT
* * * *
6047 CAATTATAATTTGTTTTAATATGAAATGTAATAAAATTCAACTCT-AAATCAATCATGAGATTAT
65 CAATTATAGTTTGTTTTAATATGAAATATAA-AAAATTCAACT-TAAAATCAATTATGAGATTAG
*
6111 AAAACTATTTAAAACGAGTAATAAGGCTTTTGAAAGAAT
128 AAAAC-ATTTAAAACGAGTAATAAGGTTTTTGAAAGAAT
6150 NNNNNNNNNN
Statistics
Matches: 273, Mismatches: 51, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
169 72 0.26
170 192 0.70
171 8 0.03
172 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.36
Consensus pattern (168 bp):
AGACTATAAATAGACTTTTCTTCTAAATAAATGGTTTTTCTACACGTTTTTCGAGACAAACATTC
AATTATAGTTTGTTTTAATATGAAATATAAAAAATTCAACTTAAAATCAATTATGAGATTAGAAA
ACATTTAAAACGAGTAATAAGGTTTTTGAAAGAATAGA
Found at i:7349 original size:170 final size:167
Alignment explanation
Indices: 6753--7363 Score: 479
Period size: 170 Copynumber: 3.6 Consensus size: 167
6743 NNNNNNATAT
* * * * * *
6753 GGCTTTTGATGGAATGGGAGACTATAAATGGACTTTGCTTTCGAATAAATGGGTTTTTCTACACG
1 GGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTCCAAATAAATGGGTTTTTCTACACG
*********
6818 TTT-CTCAAGACA-GACATTCAATTATAGTCTGTTTTANNNNNNNNNNTAAAAAATTCAACTTAA
66 TTTCCT-AAGACAGGA-ATTCAATTATAGTCTGTTTTA-ACAAAAAAGTAAAAAATT-AACTTAA
* * * *
6881 AATCAATTATAAGATTTTAAAATCATTTAAAGTGACTAATAA
127 AATCAATTATGAGATTATAAAACCATTTAAA-TGAGTAATAA
** ** *
6923 GGCTTTCT-AAGGAATGAGAGACTATAAATAGTTTTTTCTTCCAAATAAATGTATTTTT-TACAT
1 GGCTTT-TGAAGGAATGAGAGACTATAAATAGACTTTTCTTCCAAATAAATGGGTTTTTCTACAC
* * * ** * *
6986 GTTTCCCAAGGCAAGCTTTCAATTGTAGTCTGTTTTAACAAAAAAGGAAAAAAATTCAACTTAAA
65 GTTTCCTAAGACAGGAATTCAATTATAGTCTGTTTTAACAAAAAA-GTAAAAAATT-AACTTAAA
* ******
7051 ATTAATTATGAGATTATAAAACCATTTAAA-GAGNNNNNNNN
128 ATCAATTATGAGATTATAAAACCATTTAAATGAG--TAATAA
** * * * *
7092 NNCTTTTGAAAGAATGAGAGACTATAAATAGACTTTTCTTCTAAATAAAT-GGCTTTTCGTACAT
1 GGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTCCAAATAAATGGGTTTTTC-TACAC
* * * ** * *
7156 G-TCCCATGAGGCAGGTGTTCAATTACT-GTCTGTTTTAACGAAAGATGTAAAACATATT-ACTT
65 GTTTCC-TAAGACAGGAATTCAATTA-TAGTCTGTTTTAAC-AAAAAAGTAAAA-A-ATTAACTT
* * *
7218 AAAATCAATTATGAGATTATACAAGCATTTAAATCTAGTAATAA
125 AAAATCAATTATGAGATTATAAAACCATTTAAAT-GAGTAATAA
7262 GGCTTTTGAAGGAAT-AGAAGACTATAAAT-GCACTTTTCTTCCAAATAAATGGGTTTTTCTACA
1 GGCTTTTGAAGGAATGAG-AGACTATAAATAG-ACTTTTCTTCCAAATAAATGGGTTTTTCTACA
*
7325 CGTTTCCTAAGACAGGAATTCAATTATAGTTTGTTTTAA
64 CGTTTCCTAAGACAGGAATTCAATTATAGTCTGTTTTAA
7364 TGAGNNNNNN
Statistics
Matches: 342, Mismatches: 78, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
167 2 0.01
168 5 0.01
169 124 0.36
170 189 0.55
171 17 0.05
172 5 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.34
Consensus pattern (167 bp):
GGCTTTTGAAGGAATGAGAGACTATAAATAGACTTTTCTTCCAAATAAATGGGTTTTTCTACACG
TTTCCTAAGACAGGAATTCAATTATAGTCTGTTTTAACAAAAAAGTAAAAAATTAACTTAAAATC
AATTATGAGATTATAAAACCATTTAAATGAGTAATAA
Found at i:7775 original size:171 final size:167
Alignment explanation
Indices: 7548--8424 Score: 786
Period size: 170 Copynumber: 5.1 Consensus size: 167
7538 AAATATATAA
* * * * * *
7548 AAAAAAACTGAACATAAAATCAATTTTGAGATAATAAAACTATTTAAA-ATGAGTAATAAGGCTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGA-GAGTAATAAGGCTT
* * *
7612 TCGAAAGAATGGATGACTATAAATAGACTTTTCTTGCAAATGAAT-TTATTTCTTCATGTTTCTG
65 TCGAAAGAATGGA-GACTATAAATGGACTTTTCTTGCAAATAAATGTT-TTTCTACATGTTTCT-
* * *
7676 GAGGTAGGCATTCAATTATAGTCTGTTTTAACT-AAAAATAT
127 GAGGCAGACATTCAATTATAGTCTGTTTTAA-TGAAAAATGT
* * * *
7717 AAAAACAATTCAGCCTAAAAATCAATTATGAGATAATAAAACCATTTAAAGAGAGTAATATGGCT
1 AAAAA-AATTCA-ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCT
* * * * * *
7782 TTC-AATGGAATGGGAGACTATAAATGGACTTTGCTTTCGAATAAGTGGGTTTTTCTACATATTT
64 TTCGAA-AGAAT-GGAGACTATAAATGGACTTTTCTTGCAAATAAAT--GTTTTTCTACATGTTT
* * *
7846 CTCGAGACAGGCATTCAATTATAGTATGTTTTAATGAAAAATG-
125 CT-GAGGCAGACATTCAATTATAGTCTGTTTTAATGAAAAATGT
* *
7889 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTT
* * * **
7954 TGAAAGAATGGGAGACTATAAATAGACTTTTCTT-CTAAATAAATGACTTTTCCTACATGTCCCA
66 CGAAAGAAT-GGAGACTATAAATGGACTTTTCTTGC-AAATAAATG--TTTTTCTACATGTTTC-
*** * *
8018 TGAGGCAGGTGTTCAATTACTA-TCTGTTTTTATGAAAGATGT
126 TGAGGCAGACATTCAATTA-TAGTCTGTTTTAATGAAAAATGT
* ** * * **
8060 -AAAACATTTTACTTAAAATCAATTATGAGATTATACAAGCATTTAAAGCTAGTAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTT
* * *
8124 TG-AAGAAATGAGAGACTATAAATGGACTTTTCTTCCAAATAAATGGGTTTTTCTACACGTTTCC
66 CGAAAG-AATG-GAGACTATAAATGGACTTTTCTTGCAAATAAAT--GTTTTTCTACATGTTT-C
* * * * *
8188 TAAGACAGAAATTCAATTATAGTTTGTTTTAATGAGAAATGT
126 TGAGGCAGACATTCAATTATAGTCTGTTTTAATGAAAAATGT
* *
8230 AAAAAAATTCAACTTTAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTT
* * * ** ** * **
8295 CGAAGGAAAGGGTGACTATAAATGGAC-TTTGATGCCTATGAATATCTTTTTCTTTATGTTTCTC
66 CGAAAG-AATGGAGACTATAAATGGACTTTTCTTGCAAAT-AA-ATGTTTTTCTACATGTTTCT-
* * **
8359 GATGTCA-ACATGCAATTATAGTCTGTTTTAACCAAAAATGT
127 GA-GGCAGACATTCAATTATAGTCTGTTTTAATGAAAAATGT
* *
8400 AAAAAAAATTGAACATAAAATCAAT
1 -AAAAAAATTCAACTTAAAATCAAT
8425 NNNNNNNNNN
Statistics
Matches: 580, Mismatches: 98, Indels: 58
0.79 0.13 0.08
Matches are distributed among these distances:
168 1 0.00
169 14 0.02
170 311 0.54
171 186 0.32
172 19 0.03
173 47 0.08
174 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (167 bp):
AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAGGCTTT
CGAAAGAATGGAGACTATAAATGGACTTTTCTTGCAAATAAATGTTTTTCTACATGTTTCTGAGG
CAGACATTCAATTATAGTCTGTTTTAATGAAAAATGT
Found at i:7948 original size:341 final size:339
Alignment explanation
Indices: 7548--8409 Score: 947
Period size: 341 Copynumber: 2.5 Consensus size: 339
7538 AAATATATAA
* * * * * * *
7548 AAAAAAACTGAACATAAAATCAATTTTGAGATAATAAAACTATTTAAA-ATGAGTAATAAGGCTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGA-GAATAATAAGGCTT
7612 TCGAAAGAATGGATGACTATAAATAGACTTTTCTTGCAAATGAAT-TTATTTCTTCATGTTTCTG
65 TCGAAAGAATGGATGACTATAAATAGACTTTTCTTGCAAATGAATATT-TTTCTTCATGTTTCT-
*
7676 GAGGTAGGCATTCAATTATAGTCTGTTTTAACTAAAAATATAAAAACAATTCAGCCTAAAAATCA
128 GAGGTAGGCATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAACAATTCA--CTAAAAATCA
* * *
7741 ATTATGAGATAATAAAACCATTTAAAGAGAGTAATATGGC-TTTCAATGGAATGGGAGACTATAA
191 ATTATGAGATAATAAAACCATTTAAAGAGAGTAATAAGGCTTTTCAA-GAAATGAGAGACTATAA
* * * * * **
7805 ATGGACTTTGCTTTCGAATAAGTGGGTTTTTCTACATATTT-CTCGAGACAGGCATTCAATTATA
255 ATGGACTTTGCTTCCAAATAAATGGGTTTTTCTACACATTTCCT-AAGACAGAAATTCAATTATA
7869 GTATGTTTTAATGAAAAATG-
319 GTATGTTTTAATGAAAAATGT
* *
7889 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTT
* * * * **
7954 TGAAAGAATGGGA-GACTATAAATAGACTTTTCTT-CTAAATAAATGACTTTTCCTACATGTCCC
66 CGAAAGAAT-GGATGACTATAAATAGACTTTTCTTGC-AAATGAAT-A-TTTTTCTTCATGTTTC
* ** * * * * *
8017 ATGAGGCAGGTGTTCAATTACTA-TCTGTTTTTA-TGAAAGATGT-AAAACATTTTACTTAAAAT
127 -TGAGGTAGGCATTCAATTA-TAGTCTGTTTTAACT-AAAAATGTAAAAACAATTCACTAAAAAT
* * * ** *
8079 CAATTATGAGATTATACAAGCATTTAAAGCTAGTAATAAGGCTTTTGAAGAAATGAGAGACTATA
189 CAATTATGAGATAATAAAACCATTTAAAGAGAGTAATAAGGCTTTTCAAGAAATGAGAGACTATA
* *
8144 AATGGACTTTTCTTCCAAATAAATGGGTTTTTCTACACGTTTCCTAAGACAGAAATTCAATTATA
254 AATGGACTTTGCTTCCAAATAAATGGGTTTTTCTACACATTTCCTAAGACAGAAATTCAATTATA
* *
8209 GTTTGTTTTAATGAGAAATGT
319 GTATGTTTTAATGAAAAATGT
*
8230 AAAAAAATTCAACTTTAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTT
1 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTT
* * * * ** ** *
8295 CGAAGGAAAGGGTGACTATAAATGGAC-TTTGATGCCTATGAATATCTTTTTCTTTATGTTTCTC
66 CGAAAGAATGGATGACTATAAATAGACTTTTCTTGCAAATGAATA--TTTTTCTTCATGTTTCT-
* * * * *
8359 GATGTCA-ACATGCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAAATT
128 GAGGT-AGGCATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAACAATT
8410 GAACATAAAA
Statistics
Matches: 429, Mismatches: 72, Indels: 40
0.79 0.13 0.07
Matches are distributed among these distances:
339 4 0.01
340 178 0.41
341 189 0.44
342 13 0.03
343 40 0.09
344 5 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (339 bp):
AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGAATAATAAGGCTTT
CGAAAGAATGGATGACTATAAATAGACTTTTCTTGCAAATGAATATTTTTCTTCATGTTTCTGAG
GTAGGCATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAACAATTCACTAAAAATCAATTAT
GAGATAATAAAACCATTTAAAGAGAGTAATAAGGCTTTTCAAGAAATGAGAGACTATAAATGGAC
TTTGCTTCCAAATAAATGGGTTTTTCTACACATTTCCTAAGACAGAAATTCAATTATAGTATGTT
TTAATGAAAAATGT
Done.