Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399765.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3007.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5115
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:2796 original size:19 final size:19

Alignment explanation


    Indices: 2772--2811  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2762 TAGGTGGATA

                               
       2772 GTTATACGTATACAGGTTG
          1 GTTATACGTATACAGGTTG

                        *      
       2791 GTTATACGTATATAGGTTG
          1 GTTATACGTATACAGGTTG

              
       2810 GT
          1 GT

       2812 ATCCCATATA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.25, C:0.07, G:0.28, T:0.40


Consensus pattern (19 bp):   
GTTATACGTATACAGGTTG

Found at i:4379 original size:27 final size:28

Alignment explanation


    Indices: 4317--4380  Score: 76
    Period size: 28  Copynumber: 2.3  Consensus size: 28

       4307 AGATGATATT

                        *               
       4317 AATTTTAATTTTTAAAATAAAATATTAA
          1 AATTTTAATTTTAAAAATAAAATATTAA

               *                *  *    
       4345 AATGTTAATTTTAAAAAT-ATATTTTAA
          1 AATTTTAATTTTAAAAATAAAATATTAA

            *        
       4372 TATTTTAAT
          1 AATTTTAAT

       4381 GAACCGAGTA


Statistics
Matches: 30,  Mismatches: 6, Indels: 1
        0.81            0.16        0.03

Matches are distributed among these distances:
  27   14  0.47
  28   16  0.53

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (28 bp):   
AATTTTAATTTTAAAAATAAAATATTAA
Done.