Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399777.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3018.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3261
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.23

Warning! 1276 characters in sequence are not A, C, G, or T


Found at i:1624 original size:165 final size:161

Alignment explanation


    Indices: 1439--1759  Score: 296
    Period size: 172  Copynumber: 2.0  Consensus size: 161

       1429 TCTCAAAATT

                   *                        *     *   *  *                   
       1439 GATTTTAGGTTCAATTTTTTTTACATTATTCATTAAAATAGATTATAATT-AA-ATGT-C-T-AG
          1 GATTTTAAGTTCAATTTTTTTTACATTATTCACTAAAACAGACTACAATTGAACATGTACTTGAG

             **                    *               * *    *        *         
       1499 CTCAAG-GAA-AAAAAGACATTCGTTGACAAGAAAAGTCTATTTATTGTCACCCATTCCTTCAAA
         66 -AAAAGTGAAGAAAAAGACATTCATTGACAAGAAAAGTCCACTTATAGTCACCCAATCCTTCAAA

               *                            
       1562 AGCGATATTACTCGCTTTAAATGGTTTTATAA
        130 AGCCATATTACTCGCTTTAAATGGTTTTATAA

                                 * *        *    *  *                       *
       1594 NNNNNNNNNNGATTTTAAGTTGATTTTTTTTTGCATTCTTTACTAAAACAGACTACAATTGAACG
          1 ----------GATTTTAAGTTCAATTTTTTTTACATTATTCACTAAAACAGACTACAATTGAACA

                                       *                                     
       1659 TGTACCTTGAGAAAAGTGAAGAAAAAGGCATTCATTGACAAGAAAAGTCCACTTATAGTCACCCA
         56 TGTA-CTTGAGAAAAGTGAAGAAAAAGACATTCATTGACAAGAAAAGTCCACTTATAGTCACCCA

                          *                     
       1724 ATCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTT
        120 ATCCTTCAAAAGCCATATTACTCGCTTTAAATGGTT

       1760 NNNNNNNNNN


Statistics
Matches: 127,  Mismatches: 21, Indels: 9
        0.81            0.13        0.06

Matches are distributed among these distances:
 165   40  0.31
 166    2  0.02
 167    3  0.02
 169    1  0.01
 170    4  0.03
 171    5  0.04
 172   72  0.57

ACGTcount: A:0.34, C:0.15, G:0.13, T:0.35


Consensus pattern (161 bp):   
GATTTTAAGTTCAATTTTTTTTACATTATTCACTAAAACAGACTACAATTGAACATGTACTTGAG
AAAAGTGAAGAAAAAGACATTCATTGACAAGAAAAGTCCACTTATAGTCACCCAATCCTTCAAAA
GCCATATTACTCGCTTTAAATGGTTTTATAA
Done.