Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399801.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3041.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2391
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.24

Warning! 853 characters in sequence are not A, C, G, or T


Found at i:1400 original size:171 final size:161

Alignment explanation


    Indices: 1146--1471  Score: 379
    Period size: 171  Copynumber: 2.0  Consensus size: 161

       1136 AACTGTAAAA

                               *                                             
       1146 AAATTTAACTAAAAATCAATTATGACGCTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAA
          1 AAATTTAACTAAAAATCAACTATGACGCTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAA

              *                                                              
       1211 GGTACTGGGGACTATAAATAGACTTTTCTAACCAATGGATATATTTTTCTTCACGTTTCTTAAGA
         66 GGCACTGGGGACTATAAATAGACTTTTCTAACCAATGGATATATTTTTCTTCACGTTTCTTAAGA

                                *                    
       1276 TACACATTCAATTATAATCTCTTTTACNNNNNNNNNNAAAT
        131 TACACATTCAATTATAATCTATTTTAC----------AAAT

                      *                                                     *
       1317 AAATTTAACTTAAAATCAACTATG-CTG-TGATAAAATCATTTAAAGCGAGTAATAAGGCTTTCG
          1 AAATTTAACTAAAAATCAACTATGAC-GCT-ATAAAATCATTTAAAGCGAGTAATAAGGCTTTCA

                  *       *               * * *          *                  *
       1380 AAGGCATTGGTGG-TTATAAATAGACTTTTTTTATCAATGGATATCTTTTTCTTCACGTTTCTTG
         64 AAGGCACTGG-GGACTATAAATAGACTTTTCTAACCAATGGATATATTTTTCTTCACGTTTCTTA

              *  *      *               
       1444 AGGTAGACATTCCATTATAATCTATTTT
        128 AGATACACATTCAATTATAATCTATTTT

       1472 TAAAAAAATA


Statistics
Matches: 137,  Mismatches: 15, Indels: 6
        0.87            0.09        0.04

Matches are distributed among these distances:
 170    2  0.01
 171  133  0.97
 172    2  0.01

ACGTcount: A:0.34, C:0.13, G:0.13, T:0.37


Consensus pattern (161 bp):   
AAATTTAACTAAAAATCAACTATGACGCTATAAAATCATTTAAAGCGAGTAATAAGGCTTTCAAA
GGCACTGGGGACTATAAATAGACTTTTCTAACCAATGGATATATTTTTCTTCACGTTTCTTAAGA
TACACATTCAATTATAATCTATTTTACAAAT
Done.