Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399812.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3051.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2593
ACGTcount: A:0.17, C:0.05, G:0.07, T:0.17

Warning! 1379 characters in sequence are not A, C, G, or T


Found at i:1092 original size:169 final size:171

Alignment explanation


    Indices: 746--1104  Score: 447
    Period size: 171  Copynumber: 2.1  Consensus size: 171

        736 NNNNNNNNNN

                      *            *     *   *            *   *            **
        746 TCAATTATGAAATTAT-AAATCATTTAAAGCGATTAATAAGCTTTTTGAAGGAATAGGTGACTTT
          1 TCAATTATGAGATTATAAAATCAATTAAACCGAGTAATAAGCTTTTCGAAAGAATAGGTGACTAA

                *        *                     *       *     *  *            
        810 AAATTGACTTTTCTTCTCAATGAATGCTTGTTTCTTCATGTTTTTCGAATTAGACATTCAATTAT
         66 AAATGGACTTTTCATCTCAATGAATGCTTGTTTCTACATGTTTCTCGAAGTAAACATTCAATTAT

            *    *                                   
        875 TGTCTGTTTTAAAAAAGAATGTAAAAAAATTCAACTTAAAA
        131 AGTCTATTTTAAAAAAGAATGTAAAAAAATTCAACTTAAAA

            *                          *             *             *         
        916 CCAATTATGAGATTATAAAATCAATTACACCGAGTAATAAGGTTTTCGAAAGAATTGGTGACTAA
          1 TCAATTATGAGATTATAAAATCAATTAAACCGAGTAATAAGCTTTTCGAAAGAATAGGTGACTAA

                   *         *                               *         *    *
        981 AAATGGATTTTTCATCTTAATGAATGTCTT-TTTCTACATGTTTCTCGAGGTAAACATTTAATTG
         66 AAATGGACTTTTCATCTCAATGAATG-CTTGTTTCTACATGTTTCTCGAAGTAAACATTCAATTA

                         *                            
       1045 TAGTCTATTTT-ATAAA-AATGTAAAAAAATTCAACTTAAAA
        130 TAGTCTATTTTAAAAAAGAATGTAAAAAAATTCAACTTAAAA

                                
       1085 TCAATTATGAGATTATAAAA
          1 TCAATTATGAGATTATAAAA

       1105 CTATTNNNNN


Statistics
Matches: 160,  Mismatches: 27, Indels: 5
        0.83            0.14        0.03

Matches are distributed among these distances:
 169   43  0.27
 170   18  0.11
 171   96  0.60
 172    3  0.02

ACGTcount: A:0.39, C:0.11, G:0.13, T:0.38


Consensus pattern (171 bp):   
TCAATTATGAGATTATAAAATCAATTAAACCGAGTAATAAGCTTTTCGAAAGAATAGGTGACTAA
AAATGGACTTTTCATCTCAATGAATGCTTGTTTCTACATGTTTCTCGAAGTAAACATTCAATTAT
AGTCTATTTTAAAAAAGAATGTAAAAAAATTCAACTTAAAA
Done.