Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399816.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3055.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.21

Warning! 601 characters in sequence are not A, C, G, or T


Found at i:294 original size:171 final size:161

Alignment explanation


    Indices: 1--484  Score: 366
    Period size: 171  Copynumber: 2.9  Consensus size: 161

                                               *       *                     
          1 AAAGAGAGTAATAAGGCTTTTAAAGGCCTAGGTGATTATAAATGGGCTTTTCTTGCCAATGAATG
          1 AAAGAGAGTAATAAGGCTTTTAAAGGCCTAGGTGACTATAAATAGGCTTTTCTTGCCAATGAATG

                               **  *              *                          
         66 GGTTTTTCTTCATGTTTCTTGAGGAAAACATTCAATTGTAATCTATTTTAACCAAAAATGTAA-A
         66 GGTTTTTCTTCATGTTTCTCAAGCAAAACATTCAATTGCAATCTATTTTAACCAAAAATGTAATA

                                                      
        130 ACAATTCAACNNNNNNNNNNTTATGAGATTATAAAACTATTT
        131 A-AATTCAAC----------TTATGAGATTATAAAACTATTT

                                 *       *                *                  
        172 AAAGAGAGTAATAAGGCTTTTGAAGGCCTGGGTGACTATAAATAGGTTTTTCTT-CCTAATGAAT
          1 AAAGAGAGTAATAAGGCTTTTAAAGGCCTAGGTGACTATAAATAGGCTTTTCTTGCC-AATGAAT

            *                        *                 * *    **             
        236 TGGTTTTTCTTCATGTTTCTCAAGCCAAACATTCAATTGCAATTTGTTTTGGCCAAAAATGTAAT
         65 GGGTTTTTCTTCATGTTTCTCAAGCAAAACATTCAATTGCAATCTATTTTAACCAAAAATGTAAT

                     *         *   *          *****    
        301 AAAATTCAATTTAAT-ATCAATTTTGCAGNNNNNNNNNNATTT
        130 AAAATTCAACTT-ATGA--GATTAT--A------AAACTATTT

                                 *     *                *  *                 
        343 AAAGAGAGTAATAAGGCTTTTGAAGGCTTAGGTGACTCATAAATGGGATTTTCTTGCCAATGAAT
          1 AAAGAGAGTAATAAGGCTTTTAAAGGCCTAGGTGACT-ATAAATAGGCTTTTCTTGCCAATGAAT

                      *    *       *   *         * **     * *                
        408 GGGTTTTTCTACATGCTTCTCGATGC-CAACATTCAAGTATAATCTGTGTTAACCAAAAATGTAA
         65 GGGTTTTTCTTCATGTTTCTC-AAGCAAAACATTCAATTGCAATCTATTTTAACCAAAAATGTAA

                  *       
        472 -AATAAATCAACTT
        129 TAA-AATTCAACTT

        485 CAAANNNNNN


Statistics
Matches: 255,  Mismatches: 41, Indels: 33
        0.78            0.12        0.10

Matches are distributed among these distances:
 161    3  0.01
 162    2  0.01
 163    4  0.02
 165    1  0.00
 170    2  0.01
 171  158  0.62
 172   80  0.31
 173    5  0.02

ACGTcount: A:0.33, C:0.13, G:0.16, T:0.34


Consensus pattern (161 bp):   
AAAGAGAGTAATAAGGCTTTTAAAGGCCTAGGTGACTATAAATAGGCTTTTCTTGCCAATGAATG
GGTTTTTCTTCATGTTTCTCAAGCAAAACATTCAATTGCAATCTATTTTAACCAAAAATGTAATA
AAATTCAACTTATGAGATTATAAAACTATTT
Done.