Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399851.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3086.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.21

Warning! 425 characters in sequence are not A, C, G, or T


Found at i:874 original size:171 final size:170

Alignment explanation


    Indices: 578--1082  Score: 577
    Period size: 171  Copynumber: 3.0  Consensus size: 170

        568 NNNNNNNNNN

                                                  *                **        
        578 TTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACATTAAATGGTTTTATATTGC-CATAAT
          1 TTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATA-AACTCATAAT

                  ** *           *               *  **    *                **
        642 TGATTTTTAGTTGAATT-TTTTTACATTTTTAGTTAAGACGGACTATAATTGGATGTCTACCTCA
         65 TGATTTAAATTTGAATTCTTTGTACATTTTTAGTTAAAACAAACT-GAATT-GATGTCTACCTTG

                         *    *                       * 
        706 AGAAA-AGTAAAGGAAAAGGCATTCATTGGCAAGAAAAGTCCCT
        128 AGAAACA-TAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT

                             *               *                               
        749 TTATAGTCACCCATTCCCTCAAAAGCCTTATTAGTCACTTTAAATGGTTTTATAAACTCATAATT
          1 TTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAAACTCATAATT

                                        *                        *           
        814 GATTTAAATTTGAATTCTTTGTACATTTATAGTTAAAACAAACTGAATTGACTATCTACCTTGAG
         66 GATTTAAATTTGAATTCTTTGTACATTTTTAGTTAAAACAAACTGAATTGA-TGTCTACCTTGAG

                                                     
        879 AAACATAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
        130 AAACATAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT

            **********                                             *  * *   *
        920 NNNNNNNNNNCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTAAAAATA
          1 TTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAAACTCATAATT

                                     *     *                       *         
        985 GATTTAAATTT-ATATTCTTTGTACGTTTTTGGTTAAAACAAACTGAATTGAATGCCTACCTTGA
         66 GATTTAAATTTGA-ATTCTTTGTACATTTTTAGTTAAAACAAACTGAATTG-ATGTCTACCTTGA

                   *                          
       1049 GAAACATGAAGAAAAAAGCATTCATTGGCAAGAA
        129 GAAACATAAAGAAAAAAGCATTCATTGGCAAGAA


Statistics
Matches: 286,  Mismatches: 42, Indels: 12
        0.84            0.12        0.04

Matches are distributed among these distances:
 170    4  0.01
 171  258  0.90
 172   24  0.08

ACGTcount: A:0.36, C:0.15, G:0.12, T:0.34


Consensus pattern (170 bp):   
TTATAGTCACCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAAACTCATAATT
GATTTAAATTTGAATTCTTTGTACATTTTTAGTTAAAACAAACTGAATTGATGTCTACCTTGAGA
AACATAAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCAT
Done.