Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399873.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3107.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5043
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.28
Warning! 1168 characters in sequence are not A, C, G, or T
Found at i:1149 original size:171 final size:169
Alignment explanation
Indices: 633--1428 Score: 620
Period size: 171 Copynumber: 4.7 Consensus size: 169
623 NNNNNNNNNN
* * *
633 TGAA-TTTTTTACATTTTTTATTAGAACAGATTATAATTGATTGTTTGCCTTAGAAAACATGAAG
1 TGAATTTTTTTACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCCTCAG-AAACATGAAG
* * ** * ** *
697 AAAAAGCCATTTATTGACAAGAAAAGTCCATTTATAGTCTTCTATTTCTTCAAAAGCCTTACTAC
65 AAAAAGCCATTCA-TGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCAAAAGCCTTATTAC
* * *
762 TCGCTTTAAATGGTTTTATAATCTGATAATTGATTTTAAGT
129 TCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAGGT
******** ** * **
803 T--ATTTTTTNNNNNNNNNNTGGTTAAAATAGATTATAATTGATTGTCTGCCTCAGGAAATGTGA
1 TGAATTTTTT--TACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCCTCA-GAAACATGA
* * * * * * * * *
866 AAAAAAATCCATTCATTACTAAGAAAAGTCAATATATAGTCACCAATTCATTCAAAAGCCTTATT
63 AGAAAAAGCCATTCATGAC-AAGAAAAGACCATTTATAGTCACCCATGCCTTCAAAAGCCTTATT
*********
931 ACTCGCTTTAAATAGTTTTATAATCTCATANNNNNNNNNNA-GT
127 ACTCGCTTTAAATAGTTTTATAATCTCATA-ATTGATTTTAGGT
* * * *
974 TGAATTTTTTTATATTTTTTATTAAAATAGATTATAATTAAATGTTTGCCTCATGAAACATGAAT
1 TGAATTTTTTTACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCCTCA-GAAACATGAAG
* *
1039 AAAAAGCCATTCATCGACAAGAAAAGACCATTTATAGTTACCCATGCCTTCGAAAGCCTTATTAC
65 AAAAAGCCATTCAT-GACAAGAAAAGACCATTTATAGTCACCCATGCCTTCAAAAGCCTTATTAC
* *
1104 TCGTTTTATAT-GATTTTATAATCTCATAATTGATTTTAGGT
129 TCGCTTTAAATAG-TTTTATAATCTCATAATTGATTTTAGGT
* ** * * *
1145 TGAATTTTTTT-TATTTTTGGTTAAAATAGATTATAATTGGTTGTTTGCCTTGAGAAACGTGAAG
1 TGAATTTTTTTACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCC-TCAGAAACATGAAG
* * * * * *
1209 ACAAAGCCATTCAATGATAAGAAAAGTA-CATTTGTAGTCACCCATGCCTTCGAAAGTCTTCTTA
65 AAAAAGCCATTC-ATGACAAGAAAAG-ACCATTTATAGTCACCCATGCCTTCAAAAGCCTTATTA
** * * * *
1273 CTCAATTTCAATAGTTTTATAATATCATAATCGATTTGAGGT
128 CTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAGGT
* * * * * * * * * *
1315 TGAATTGTTTTACACTTTTTATTAAAACATATTATAATTAAATATTTACCTTGAGAAACATG-AC
1 TGAATTTTTTTACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCC-TCAGAAACATGAAG
* * * *
1379 CAAAA-CTCATTTATTGACAAGAAAAGCCCATTTATAGTCACCCAAGCCTT
65 AAAAAGC-CATTCA-TGACAAGAAAAGACCATTTATAGTCACCCATGCCTT
1429 GAGATTATTA
Statistics
Matches: 488, Mismatches: 119, Indels: 38
0.76 0.18 0.06
Matches are distributed among these distances:
168 1 0.00
169 7 0.01
170 183 0.38
171 286 0.59
172 4 0.01
173 7 0.01
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.38
Consensus pattern (169 bp):
TGAATTTTTTTACATTTTTTATTAAAATAGATTATAATTGATTGTTTGCCTCAGAAACATGAAGA
AAAAGCCATTCATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCAAAAGCCTTATTACTC
GCTTTAAATAGTTTTATAATCTCATAATTGATTTTAGGT
Found at i:1233 original size:170 final size:168
Alignment explanation
Indices: 633--1952 Score: 586
Period size: 170 Copynumber: 7.8 Consensus size: 168
623 NNNNNNNNNN
** * * *
633 TGAATTTTTTACATTTTTTATTAGAACAGATTATAATTGATTGTTTGCCTT-AGAAAACATGAAG
1 TGAATTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAG-AAACATGAAG
* * * ** * ** * *
697 AAAAAGCCATTTATTGACAAGAAAAGTCCATTTATAGTCTTCTATTTCTTCAAAAGCCTTACTAC
65 AAAAAGCCATTCAATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTAC
* * *
762 TCGCTTTAAATGGTTTTATAATCTGATAATTGATTTTAAGT
130 TCGCTTT-AAT-ATTTTATAATCTCATAATTGATTTTAGGT
******* * * * **
803 T--ATTTTTTNNNNNNNNNNTGGTTAAAATAGATTATAATTGATTGTCTGCC-TCAGGAAATGTG
1 TGAATTTTTT---ACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGA-GAAACATG
* * * * * * * * * *
865 AAAAAAAATCCATTC-ATTACTAAGAAAAGTCAATATATAGTCACCAATTCATTCAAAAGCCTTA
62 AAGAAAAAGCCATTCAATGAC-AAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTA
*********
929 TTACTCGCTTTAAATAGTTTTATAATCTCATANNNNNNNNNNA-GT
126 TTACTCGCTTT-AATA-TTTTATAATCTCATA-ATTGATTTTAGGT
* ** * *
974 TGAATTTTTTTATATTTTTTATTAAAATAGATTATAATTAAATGTTTGCC-TCATGAAACATGAA
1 TGAA-TTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGA-GAAACATGAA
* *
1038 TAAAAAGCCATTC-ATCGACAAGAAAAGACCATTTATAGTTACCCATGCCTTCGAAAGCCTTATT
64 GAAAAAGCCATTCAAT-GACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATT
*
1102 ACTCGTTTTATATGATTTTATAATCTCATAATTGATTTTAGGT
128 ACTCGCTTTA-AT-ATTTTATAATCTCATAATTGATTTTAGGT
** ** *
1145 TGAATTTTTTTTATTTTTGGTTAAAATAGATTATAATTGGTTGTTTGCCTTGAGAAACGTGAAGA
1 TGAATTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAGA
* * * * *
1210 CAAAGCCATTCAATGATAAGAAAAGTA-CATTTGTAGTCACCCATGCCTTCGAAAGTCTTCTTAC
66 AAAAGCCATTCAATGACAAGAAAAG-ACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTAC
** * * *
1274 TCAATTTCAATAGTTTTATAATATCATAATCGATTTGAGGT
130 TCGCTTT-AATA-TTTTATAATCTCATAATTGATTTTAGGT
* * * * * *
1315 TGAATTGTTTTACACTTTTT-ATTAAAACATATTATAATTAAATATTTACCTTGAGAAACATG-A
1 TGAATT-TTTTACA-TTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACATGAA
** * * * * *
1378 CCAAAA-CTCATTTATTGACAAGAAAAGCCCATTTATAGTCACCCAAGCCTT-G--AG-ATTATT
64 GAAAAAGC-CATTCAATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATT
**************************
1438 ACTCGCTTTAA-ATTGNNNNNNNNNNNNNNNNNNNNNNNNNN
128 ACTCGCTTTAATATT-TTATAATCTCATAATTGATTTTAGGT
********** * *
1479 NNNNNNNNNNACATTTTTGGTCAAAACAGATTATAATTGAATGTTTGCCTTGAGAAATC-TGAAG
1 TGAATTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAA-CATGAAG
* * * * * * * * *
1543 GAAAAGCCATTCATTGGCAAAAAAAGTCTAATTATAGTTACTCATGCCTTCGAAAGCCTTATTAC
65 AAAAAGCCATTCAATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTAC
* * *
1608 TCGTTTTATATGGTTTTATAATCTCATAACTGATTTTAGGT
130 TCGCTTTA-AT-ATTTTATAATCTCATAATTGATTTTAGGT
* ** * ** * **
1649 TGATTTTTTTTTATTTTTAGTTAAAATAGATTATAATTGGCTGTCTGCCTTGAGAAATGTGAAGA
1 TGAATTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAGA
* * *
1714 CAACA-CCATTCAATGATAAGAAAAGTA-CATTTGTAGTCACCCATGCCTTCGAAAGCCTTATTA
66 -AAAAGCCATTCAATGACAAGAAAAG-ACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTA
** ***********
1777 CTCAATTTCAATAGTTTTATANNNNNNNNNNCGATTTTAGGT
129 CTCGCTTT-AATA-TTTTATAATCTCATAATTGATTTTAGGT
* * ** * * * * *
1819 TGAATTGTTTTATACTTTTAATTAAAACATATTATAATTAAATATTTACCTTGAGAAACATGAA-
1 TGAATT-TTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAG
* * * * * * *
1883 CAAAA-CTCATTTATTGACAGGAAAAGCCCATTTATAGTCACCCAAGCCTT-G--AG-ATTATTA
65 AAAAAGC-CATTCAATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTA
1943 CTCGCTTTAA
129 CTCGCTTTAA
1953 ATTGNNNNNN
Statistics
Matches: 835, Mismatches: 271, Indels: 93
0.70 0.23 0.08
Matches are distributed among these distances:
162 5 0.01
163 39 0.05
164 41 0.05
165 6 0.01
166 23 0.03
167 6 0.01
168 21 0.03
169 9 0.01
170 343 0.41
171 325 0.39
172 10 0.01
173 1 0.00
174 6 0.01
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.36
Consensus pattern (168 bp):
TGAATTTTTTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTGCCTTGAGAAACATGAAGA
AAAAGCCATTCAATGACAAGAAAAGACCATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACT
CGCTTTAATATTTTATAATCTCATAATTGATTTTAGGT
Found at i:1354 original size:341 final size:338
Alignment explanation
Indices: 633--1428 Score: 780
Period size: 341 Copynumber: 2.3 Consensus size: 338
623 NNNNNNNNNN
* * * * *
633 TGAATTTTTTACATTTTTTATTAGAACAGATTATAATTGATTGTTTGCCTTAGAAAACATGAAGA
1 TGAATTTTTTACATTTTTTATTAAAACAGATTATAATTAAATGTTTGCCTCAG-AAACATGAACA
* * * **
698 AAAAGCCATTTATTGACAAGAAAAGTCCATTTATAGTCT-TCTATTTCTTCAAAAGCCTTACTAC
65 AAAAGCCATTTATTGACAAGAAAAGACCATTTATAGT-TACCCATGCCTTCAAAAGCCTTACTAC
* * ********
762 TCGCTTTAAATGGTTTTATAATCTGATAATTGATTTTAAGTTATTTTTTNNNNNNNNNNTGGTTA
129 TCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTATTTTTT--ATTATTTTTGGTTA
* * *
827 AAATAGATTATAATTGATTGTCTGCCTCAGGAAATGTGAAAAAAAATCCATTCATTACTAAGAAA
192 AAATAGATTATAATTGATTGTCTGCCTCAGGAAACGTGAAAAAAAAGCCATTCATGACTAAGAAA
* ** *
892 AGTCAATATATAGTCACCAATTCATTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCT
257 AGTCAATATATAGTCACCAATGCATTCAAAAGCCTTATTACTCAATTTAAATAGTTTTATAATAT
**********
957 CATANNNNNNNNNNAGT
322 CATAAATCGATTTGAGT
* * *
974 TGAATTTTTTTATATTTTTTATTAAAATAGATTATAATTAAATGTTTGCCTCATGAAACATGAAT
1 TGAA-TTTTTTACATTTTTTATTAAAACAGATTATAATTAAATGTTTGCCTCA-GAAACATGAAC
* * * *
1039 AAAAAGCCATTCATCGACAAGAAAAGACCATTTATAGTTACCCATGCCTTCGAAAGCCTTATTAC
64 AAAAAGCCATTTATTGACAAGAAAAGACCATTTATAGTTACCCATGCCTTCAAAAGCCTTACTAC
* * *
1104 TCGTTTTATATGATTTTATAATCTCATAATTGATTTTAGGTTGAATTTTTT-TTATTTTTGGTTA
129 TCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTT--ATTTTTTATTATTTTTGGTTA
* * * * *
1168 AAATAGATTATAATTGGTTGTTTGCCT-TGAGAAACGTGAAGACAAAGCCATTCAATGA-TAAGA
192 AAATAGATTATAATTGATTGTCTGCCTCAG-GAAACGTGAAAAAAAAGCCATTC-ATGACTAAGA
* * * * * * * *
1231 AAAGT-ACATTTGTAGTCACCCATGCCTTCGAAAGTCTTCTTACTCAATTTCAATAGTTTTATAA
255 AAAGTCA-ATATATAGTCACCAATGCATTCAAAAGCCTTATTACTCAATTTAAATAGTTTTATAA
1295 TATCAT-AATCGATTTGAGGT
319 TATCATAAATCGATTTGA-GT
* * * * *
1315 TGAATTGTTTTACACTTTTTATTAAAACATATTATAATTAAATATTTACCTTGAGAAACATG-AC
1 TGAATT-TTTTACATTTTTTATTAAAACAGATTATAATTAAATGTTTGCC-TCAGAAACATGAAC
* * * *
1379 CAAAA-CTCATTTATTGACAAGAAAAGCCCATTTATAGTCACCCAAGCCTT
64 AAAAAGC-CATTTATTGACAAGAAAAGACCATTTATAGTTACCCATGCCTT
1429 GAGATTATTA
Statistics
Matches: 371, Mismatches: 72, Indels: 25
0.79 0.15 0.05
Matches are distributed among these distances:
339 1 0.00
340 48 0.13
341 167 0.45
342 147 0.40
343 1 0.00
344 7 0.02
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.38
Consensus pattern (338 bp):
TGAATTTTTTACATTTTTTATTAAAACAGATTATAATTAAATGTTTGCCTCAGAAACATGAACAA
AAAGCCATTTATTGACAAGAAAAGACCATTTATAGTTACCCATGCCTTCAAAAGCCTTACTACTC
GCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTATTTTTTATTATTTTTGGTTAAAAT
AGATTATAATTGATTGTCTGCCTCAGGAAACGTGAAAAAAAAGCCATTCATGACTAAGAAAAGTC
AATATATAGTCACCAATGCATTCAAAAGCCTTATTACTCAATTTAAATAGTTTTATAATATCATA
AATCGATTTGAGT
Found at i:2673 original size:165 final size:167
Alignment explanation
Indices: 2276--2674 Score: 450
Period size: 171 Copynumber: 2.4 Consensus size: 167
2266 CAAGGTAAAT
* ** * * * *
2276 ATTTAATTATAATGTGTCTTAATAAAAAATGTAAAACAATTCAACCTAAAATCGATTATGATATT
1 ATTTAATTATAATCTGT-TTAACCAAAAATATAAAAAAATTCAACCTAAAATCAATTATGAGATT
* * * * * *
2341 ATAAAACTATTGATATTGAGTAATAAGGCTTTCGAAAGCATGGGTGACTACAAATGTACTTTTCT
65 ATAAAACCAATGAAAATGAGTAATAAGGCTTTCGAAAGCATGGGTAACTACAAATGAACTTTTC-
*
2406 TATCATTGAATGGCTTTGTCTTCATGTTTCTCAAGGCAGAC
129 T-T-ATTGAATGGCTTTGTCTTCATGTTTCTCAAGACAGAC
*** * *
2447 AGCCAATTATAATCTATTTTAACCAAAAATA-AAATAAAATTCAACCTAAAATCATTTATGAGAT
1 ATTTAATTATAATCT-GTTTAACCAAAAATATAAA-AAAATTCAACCTAAAATCAATTATGAGAT
* *
2511 TATAAAACCACAT-AAAATGAGTAATAAGGCTTTCGAAGGCATGGGTAACTATAAATGAACTTTT
64 TATAAAACCA-ATGAAAATGAGTAATAAGGCTTTCGAAAGCATGGGTAACTACAAATGAACTTTT
* *
2575 C-T-TT-AATGGCTTTTTCTTCATGTTTCAT-GAGACAGAC
128 CTTATTGAATGGCTTTGTCTTCATGTTTC-TCAAGACAGAC
* *
2612 ATTTAATTATAATCTGTTTGAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGA
1 ATTTAATTATAATCTGTTT-AACCAAAAATATAAAAAAATTCAACCTAAAATCAATTATGAGA
2675 NNNNNNNNNN
Statistics
Matches: 192, Mismatches: 30, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
164 3 0.02
165 76 0.40
166 6 0.03
168 1 0.01
170 3 0.02
171 101 0.53
172 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (167 bp):
ATTTAATTATAATCTGTTTAACCAAAAATATAAAAAAATTCAACCTAAAATCAATTATGAGATTA
TAAAACCAATGAAAATGAGTAATAAGGCTTTCGAAAGCATGGGTAACTACAAATGAACTTTTCTT
ATTGAATGGCTTTGTCTTCATGTTTCTCAAGACAGAC
Found at i:3074 original size:17 final size:19
Alignment explanation
Indices: 3052--3090 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
3042 GCATGGGTTA
3052 CTATAAAT-AA-ACTTTTT
1 CTATAAATGAAGACTTTTT
3069 CTATAAATGAATGACTTTTT
1 CTATAAATGAA-GACTTTTT
3089 CT
1 CT
3091 TTATGTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 2 0.11
20 9 0.47
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (19 bp):
CTATAAATGAAGACTTTTT
Found at i:3360 original size:171 final size:170
Alignment explanation
Indices: 3183--3553 Score: 458
Period size: 171 Copynumber: 2.2 Consensus size: 170
3173 NNNNNNNNNT
* * *
3183 CATTTAAAGTGAGTAATAAGGCTTTCGAAGGAATGAATGACTATAAATGGACTTTTCTTACCAAT
1 CATTTAAAGTGAGTAATAAGGCTTTCGAAGGAATGAATAACTATAAATGAACTTTTCATACCAAT
* * * *
3248 AAATGACCTTTT-CTTCATGTTTCCCAAGGCAGACATTCAATTATAATATGTTTTGACTAAAAAT
66 AAATG-CCTTTTGCTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTT-AATAAAAAG
* *
3312 GTAAAAAAATTCAATCTAAAATCAATTATTA-GATTATAAAAC
129 GTAAAAAAATACAATCTAAAATCAATTA-TAGGATTAGAAAAC
* ** * **
3354 CATTTAAAGTGAGCAATAAGGCTTTCGAAGGCTTGAGTAACTATAAATGAACTTTTCATATTAAT
1 CATTTAAAGTGAGTAATAAGGCTTTCGAAGGAATGAATAACTATAAATGAACTTTTCATACCAAT
* ** * * * * *
3419 ATATGGTTTTTGTTTCATGTTTCTCAAGGTAGACGTTCAATTATAACATCTTTTAATCAAAAGGT
66 AAATGCCTTTTGCTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTTAATAAAAAGGT
* *
3484 AGAAAAATACAATTTAAAATCAATTATAGGATTAGAAAAC
131 AAAAAAATACAATCTAAAATCAATTATAGGATTAGAAAAC
* *
3524 CTTTTAAAGCGAGTAATAAGGCTTTCGAAG
1 CATTTAAAGTGAGTAATAAGGCTTTCGAAG
3554 ACTTGGGTGA
Statistics
Matches: 170, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
169 2 0.01
170 72 0.42
171 96 0.56
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
CATTTAAAGTGAGTAATAAGGCTTTCGAAGGAATGAATAACTATAAATGAACTTTTCATACCAAT
AAATGCCTTTTGCTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTTAATAAAAAGGT
AAAAAAATACAATCTAAAATCAATTATAGGATTAGAAAAC
Found at i:3569 original size:170 final size:171
Alignment explanation
Indices: 3183--3579 Score: 478
Period size: 170 Copynumber: 2.3 Consensus size: 171
3173 NNNNNNNNNT
* * * *
3183 CATTTAAAGTGAGTAATAAGGCTTTCGAAGGA-ATGAATGACTATAAATGGACTTTTCTTACCAA
1 CATTTAAAGTGAGTAATAAGGCTTTCGAA-GACTTGAGTGACTATAAATGAACTTTTCATACCAA
* * * *
3247 TAAATGACCTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTATAATATGTTTTGACTAAAAAT
65 TAAATGACCTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTTGAATAAAAAG
* *
3312 GTAAAAAAATTCAATCTAAAATCAATTATTAGATTATAAAAC
130 GTAAAAAAATACAATCTAAAATCAATTATTAGATTAGAAAAC
* * * **
3354 CATTTAAAGTGAGCAATAAGGCTTTCGAAGGCTTGAGTAACTATAAATGAACTTTTCATATTAAT
1 CATTTAAAGTGAGTAATAAGGCTTTCGAAGACTTGAGTGACTATAAATGAACTTTTCATACCAAT
* ** * * * * *
3419 ATATG-GTTTTTGTTTCATGTTTCTCAAGGTAGACGTTCAATTATAACATCTTTT-AATCAAAAG
66 AAATGACCTTTT-CTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTTGAATAAAAAG
* *
3482 GTAGAAAAATACAATTTAAAATCAATTA-TAGGATTAGAAAAC
130 GTAAAAAAATACAATCTAAAATCAATTATTA-GATTAGAAAAC
* * * *
3524 CTTTTAAAGCGAGTAATAAGGCTTTCGAAGACTTGGGTGACTATAAATGAGCTTTT
1 CATTTAAAGTGAGTAATAAGGCTTTCGAAGACTTGAGTGACTATAAATGAACTTTT
3580 TTTGTCAATG
Statistics
Matches: 191, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
169 2 0.01
170 95 0.50
171 94 0.49
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (171 bp):
CATTTAAAGTGAGTAATAAGGCTTTCGAAGACTTGAGTGACTATAAATGAACTTTTCATACCAAT
AAATGACCTTTTCTTCATGTTTCCCAAGGCAGACATTCAATTATAACATCTTTTGAATAAAAAGG
TAAAAAAATACAATCTAAAATCAATTATTAGATTAGAAAAC
Done.