Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399878.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3111.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1580
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.24

Warning! 582 characters in sequence are not A, C, G, or T


Found at i:459 original size:171 final size:159

Alignment explanation


    Indices: 252--566  Score: 330
    Period size: 170  Copynumber: 1.9  Consensus size: 159

        242 NNNNNNNNNT

                     *                 *                              *     *
        252 TTATAATCTCATAATTAATTTTAAGTTCAATTTTTTTATATTTTTTATTAAAAAAAACTAGAATT
          1 TTATAATCTAATAATTAATTTTAAGTTAAATTTTTTTATATTTTTTATTAAAAAAAACAAGAA-A

                                                          *                  
        317 GAACGT-CTACCTTGAGAAAAGTG-AAGAAAAAAGCATTCATTCG-TAAGAAAAGTCCATTTATA
         65 GAAC-TACTACCTTGAGAAAAGTGCAA-AAAAAAGCATTCATT-GACAAGAAAAGTCCATTTATA

               *                             
        379 GCCTCCCATTCCTTCAAAGGCCTTATTACTTGC
        127 GCCACCCATTCCTTCAAAGGCCTTATTACTTGC

                                       *                                    *
        412 TNNNNNNNNNNNTATAATCTAATAATTGATTTTAAGTTAAATTTTTTTATATTTTTTATTAAAAC
          1 T-----------TATAATCTAATAATTAATTTTAAGTTAAATTTTTTTATATTTTTTATTAAAAA

                  *    *       *         *       **    *                     
        477 AAACAATAAAGTACTACTATCTTGAGAAACGTGCAAACGAAAGTATTCATTGACAAGAAAAGTCC
         55 AAACAAGAAAGAACTACTACCTTGAGAAAAGTGCAAAAAAAAGCATTCATTGACAAGAAAAGTCC

                    *                
        542 ATTTATAGTCACCCATTCCTTCAAA
        120 ATTTATAGCCACCCATTCCTTCAAA

        567 NNNNNNNNNN


Statistics
Matches: 125,  Mismatches: 16, Indels: 18
        0.79            0.10        0.11

Matches are distributed among these distances:
 160    1  0.01
 169    2  0.02
 170   64  0.51
 171   58  0.46

ACGTcount: A:0.37, C:0.14, G:0.10, T:0.36


Consensus pattern (159 bp):   
TTATAATCTAATAATTAATTTTAAGTTAAATTTTTTTATATTTTTTATTAAAAAAAACAAGAAAG
AACTACTACCTTGAGAAAAGTGCAAAAAAAAGCATTCATTGACAAGAAAAGTCCATTTATAGCCA
CCCATTCCTTCAAAGGCCTTATTACTTGC
Done.