Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397516.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4555.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10851
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.33
Warning! 784 characters in sequence are not A, C, G, or T
Found at i:859 original size:170 final size:171
Alignment explanation
Indices: 139--8995 Score: 5755
Period size: 171 Copynumber: 52.2 Consensus size: 171
129 NNNNNNNNNN
* * * * *
139 TAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTC-TACTTAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTAC-CAATGAA
*********** * *
203 TGAC-TTTTTCTTCATGTTTCTCNNNNNNNNNNTTCAATTATAATCTGTTTTAAC-CAAAATCGT
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAAT-GT
* ********** *
266 ACAAAAATTCAACTTAAAATCAATTANNNNNNNNNNAAACTATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * **
310 TAAAGCGCGTAATAAGGTTTTTGAAGAAATGAGTGGCTATCAATGGACTTTTCTTACCTGTGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
** * * ** * * * * *
375 GGC-CGTTTCTTCAAGTTTTTTAAGACAGACATTTAAGTATAGCT-TGTTTTAGCAAAAAATGTA
66 -GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATGTA
* * * **
438 AAAAACTTAAACTTAAAAACAATTATGAGATT-TCAAAACTGTT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATT
* * * ** * *
481 TAAAGCGAGTACTAAGGCTTTTAAAGGAATGAGTTG-CTATAAATATACTTTTTTTATCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATG-GGTGACTATAAATGGACTTTTCTTACCAATGAA
* * * * * * * * *
545 CAGC-TTTTTCTACACGTTTCTTGAGATAGACGA-TCAATTCTAATATATTTTAACCAAAAATAT
65 -TGCTTTTTTCTTCATGTTTCTTAAGGTAGAC-ATTCAATTATAATATGTTTTAACTAAAAATGT
* *
608 -AAAAAAGTCTAACTTAAAATCAATTACGAGATTATAAAACCATT
128 AAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATT
********** * *
652 TAAAGNNNNNNNNNNGGCTTTTGAAGGAATAGGTGACTATAAATGGACATTTCTTACCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * *
717 GCTTTTTTTTTCATGTTTTTTAAGATAGACATTCAATTAT-TTATGATTTAACAAAAAATGTAAA
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAAA
* * * * *
781 AACATT-TAGTTGAAAATTAATTATGAGATTACAAAACCATT
131 AAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATT
* * * * * *
822 TAAAACGAGTAATAAGGCTGTCGAAGGTATGGGTGACTATAAATGGACCTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
********** * * *
886 TGGC-TTTTTCTTCATGTTTCNNNNNNNNNNCATTCAATTATAATCTGTTTTAACAAAAAAATAT
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAAC-TAAAAATGT
* *
950 AAAAACATTCAACTTAAAA-CGAATTATGAGATTATAAAATCATT
128 AAAAAAATTCAACTTAAAATC-AATTATGAGATTATAAAACCATT
* * * ** * *
994 TAAAGCGAGTAATAAGGATTTTCAAGGAATGAGTGACTATAAATTAACTTTTCTTTCCTATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * *** * * *
1059 G-TTTTTTCTTCACGTTTTTTAAGGTAAATATTCAATTATAGCCTATTTTAGCCAAAAATGTAAA
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAAA
* * * * *
1123 ACAATTTAACCT-AAATGCAATTATGAGATTACAAAACTATT
131 AAAATTCAACTTAAAAT-CAATTATGAGATTATAAAACCATT
* * * * * * *
1164 CAAAGCGTGTAATAAGACTTTTGAAGGAATGGGTGGCTATAAATAGACTTTTCTTGCAAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * * *
1229 GGC-TTTTCCTTAACCT-TTTC-TATGGCAGACATTCAATTCTAATATGTTTTAACCAAAAATAT
66 -GCTTTTTTCTT--CATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * * ** **
1291 -AAAAATTTTAACTTAATATCAATTACAAGATTATAAAAGAATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * * *
1334 TAAAGTGAGCAACAAGGCTTTTGAAGGAATGGGCGACTCTAAATAGATTTTTTTTACCAAGGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* *
1399 G-TCTTTTTCTTCATGCTTTC-GATA--TAGACATTCAATTAT-ATCTGTTTTAACTAAAAATGT
66 GCT-TTTTTCTTCATG-TTTCTTA-AGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* ************
1459 AAAAAAATTTAACTTAAAATCAATTATGAGATNNNNNNNNNNNN
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
*** ** * ** * * *
1503 NNNAGCGAGTAATAAGGCTTTCAAAAGCTTGGGTGATTATCAATGGACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * * * * *
1567 TGAC-TTTTTCTTCATCTTTCTCAAGGTAAACATTCAATTATAATATATTTTGACAAAAAATATG
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTA
* * *
1631 AAAACATTCAACCTAAAATCAATTATGAGATTATAAAACCGTT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
1674 TAAAGTGAGTAGTAAGGCTTTTGAAGAAATGGGTGACTATAAATGGAAC-TGTCTTGCTAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGG-ACTTTTCTTACCAATGAA
* * * * * *
1738 TGCCTTTTTCTTTATGTTTCTTAAGGCAGACATTCAATTATAATTTGTTTTAA-TCGAAAATATA
65 TGCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACT-AAAAATGTA
* * * * **
1802 AAAACATTGAACTTAAAATCAATTATGCGACTATAAAATAATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
1845 TAAAGTGAGTAATAAGGCTTTTGAA-GAATGGGTGGCCATAAATGGACTTTTCTTGCCAATGAAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATG-AA
* * * * *
1909 T-TTTTTTTCTTCATGTTTC-TAGAGGTAAACATTCAATCA-AAGTATATTTTGACTAAAAATGT
65 TGCTTTTTTCTTCATGTTTCTTA-AGGTAGACATTCAATTATAA-TATGTTTTAACTAAAAATGT
* * * * *
1971 AAAAAAATTTAACGTAACATCAATTATGAGATTACAAAACTATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * ** * * ** *
2015 TAAAGCGAGTAATAAGACTTTTAAATGAATGGGTGACTA-AAAGTAAACATTTCATGTCAACGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAA-TGGACTTTTCTTACCAATGAA
* ** * * * * *
2079 TGGC-TTTTTCTTCATGCTTCCCAAGGCAGACAATCAATTATAATTTTTTTTAACAAAAAATGTA
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTA
* *
2143 AAAAAATTCAACTTAAAATCAATTACGAGATTATAAAACCATG
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
2186 TAAAGCGAGCAATAAGGC-TGTGAAGGCATGGGTGACTATAAATAGACTTTTCTAGTA--AATGA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCT--TACCAATGA
* * * * * * *
2248 ATGAC-TTTTTCTTTACGTTTCTCATGGCAGACATTCAATTATAATCTG-TTTAATTAAAAATGT
64 ATG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * * **
2311 AGAAAAATTCAACTTAAAATCAATTACGAGGTT-TCAAAATAATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATT
* * * ** * * *
2355 TAAAGAGAGTAATAAGG-TTTTCGAAAGCATATGTGACTATAAATGGGCTTTTC-CAGTCAATGA
1 TAAAGCGAGTAATAAGGCTTTT-GAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGA
* * * * *
2418 ATGGTTTTTTCTTCACGTTTCCTAA-GTCAAACATTCAATTATAATCTGTTTTAA-TAAAAAATG
64 ATGCTTTTTTCTTCATGTTTCTTAAGGT-AGACATTCAATTATAATATGTTTTAACT-AAAAATG
* * * *
2481 TAGAAAAATTTAACTTAAAATGAATTGTGAGATTATAAAACCATT
127 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * ** * *
2526 TAAAGAGAGTAATAAGGCTTTAGAAGGAATGGGTAACTACAAATGGAGC-TTTCTCGCTAATAAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA-CTTTTCTTACCAATGAA
** * * * * *** * * *
2590 TGGC-TTTTTCTTCA-CATGCCTAGAGATTGACATTTTGTTATAGTCTGTTTTAA--AAAAATAT
65 T-GCTTTTTTCTTCATGTTTCTTA-AGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * * *
2651 TAAAAAATTCAACTTAAAATGAATTATAAGATTATAAAATCATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
2695 TTAAGCAAGTAATAAGGCCTTTGATGGAATAGGTGACTATAAATGG-CTTTT-TTTCCTAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACC-AATGAA
* * ** * * * * *
2758 TGGC-TTTTTCTTTACGTTTCTCCAGGCAAAAATTCAATTATAGCT-TGTTTCAACTAAAAATGT
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATGT
* * * *
2821 AAAAAAATTCAATTTAAAATCAATTACGACATTATAAAACTATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * ** * * *
2865 TAAAGTGAGTACTAAGACTTTCAAAGGCATGGGTGGCTATAAATGGACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * *
2929 TGACTTTTTTTTTCACGTTTCCTAAGGCA-A-A--C-A-T-TCA-A-GTTTTAA-TCAAAAATGT
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACT-AAAAATGT
* * * * *
2984 AGAAAAATTAAACTTAAAATCAATTACGAGGTT-TCAAAACAATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATT
* * * * * * *
3028 TAAAGAGAGAAATAAGGCTTTCGAAAGTATAGGTGACTATAAAT-GAGCTTTT-TTAGTCAATGA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA-CTTTTCTTA-CCAATGA
* * * * *
3091 ATGGC-CTTTTCTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTAACTAAAAATGT
64 AT-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * *
3155 AAAAAAATTCAACTTAAAATGAATTATTAGATTATAAAACTATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
3199 TAAAGCGAGTAATAAGGCTTTGGAAGGAATGGGTGACTACAAATGGAGC-TTTCTTTCTAATAAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA-CTTTTCTTACCAATGAA
** * * * * * * * *
3263 TGGC-TTTTTCTTCA-CATGCCTAGAGATTGACATTCTATTATAGTCTGTTTTAA--AAAAATAT
65 T-GCTTTTTTCTTCATGTTTCTTA-AGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * *
3324 TAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
3368 TTAAGCAAGTAATAAGG-TCTTTGATGGAATGAGTGACTATAAAT-GACTTTT-TTGCTAATGAA
1 TAAAGCGAGTAATAAGGCT-TTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAA
* * ** * * * * *
3430 TGGC-TTTTTCTTTACGTTTCTCGAGGGACAAATTCAATTATAGCT-TGTTTCAA-TAAAAAATG
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACT-AAAAATG
* *
3492 TAAAAAAATTCAACTTAAAATTAATTATGAGATTATAAAACTATT
127 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * *
3537 TAAAGTG-GTAATAATGCTTTCGAAGGCATGGGTGACCATAAATGAACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* ** * * * * *
3600 TGAC-TTTTTCATCATGTTTCCCAAGGCAGACATTCAATTATAATCTATTTTTACTAAAAAGGTA
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTA
* * * * **
3664 AAAACATTCAACTTAAAATTAATTATGAGGTTACAAAGTCATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * ** * *
3707 TAATGCGATTTATAAGGCTTTTAAAAGAATGCGTAACTATAAATAAACTTTTCTTGCCTATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * * * * *
3772 AG-TTTTTTATTCATGTTTTTTAAGGAAAACATTCAATTATAGCT-TTTTTTAGCCAAAAATATA
66 -GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATGT-
* *
3835 AAAAAAATTAAACTTAAAAAT-AATTATGAGATTTTAAAACCATT
128 AAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATT
* * * * **
3879 TAAAGCGAGTAGTAAGGCTTTTGAAGGAATGAGTTG-CTATAAATAGACTTTTTTTGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATG-GGTGACTATAAATGGACTTTTCTTACCAATGAA
* * * * *
3943 TAAC-TTTTTCTTCATGTTTCTCT-AGGTAGACAATCAATTCTAGA-ATATTTTAACCGAAAAA-
65 T-GCTTTTTTCTTCATGTTTCT-TAAGGTAGACATTCAATTATA-ATATGTTTTAA-CTAAAAAT
* *
4004 -T-AAAAAATTTAACTTAAAATCAATTATGAGATTACAAAACCATT
126 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
4048 TAAAGCGAGTAATAAGGCTTTTGAA-GATATGGGTAACTATAAATGGGCTTTTC-TAGTCAATAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGA-ATGGGTGACTATAAATGGACTTTTCTTA-CCAATGA
* * * * **
4111 ATAGC-TTTTTCTTCATGTTT-TTCAAAGTAGACATCCAAGTATAATCTGTTTTAAGGAAAAA--
64 AT-GCTTTTTTCTTCATGTTTCTT-AAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATG
*
4172 TATAAAAA---AA--T----T--A-TATGAGATTATAAAACCATT
127 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * **
4205 TAAAGCGAGTAATAACGCTTTGGAAGGAATAGGTGACTACAAGTAGACTTTTCTTGCCAACAAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * ** * * * * *
4270 GCCTTTTTCTTTATATTTCCAAAGGCT-GACATTCTATTATAGTCTGTTTTAACCAAAAATATAA
66 GCTTTTTTCTTCATGTTTCTTAAGG-TAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * * *
4334 AACAATTCAACTTCAAATGAATTA-GAGATTATAAAACCAAT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * **
4375 TGAAGCAAGTAATAAGACTTTTGAAAGAATGAGTGATTATAAATGGACTTTTTTTGTCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * *
4440 GGCCTTTTT-TT-ACGTTTTTTAAGGCAAAAATTCAATTATAAT-TGTTTTAACTAAAAATGTAA
66 -GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * *
4502 AAAAATTCAACTGAAAATCAATTACGAGATTATAAAATCATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
4544 TAAAGTGAGTACTAAAGCTTTTGAAGGCATGGGTGACTATAAATGAACTTTT-TTACTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTAC-CAATGAA
* * * ** * * * *
4608 T-CACTTTTTCTTCACGTTTCTCAAGACAGACATTCAATTATAATCTGTTTT-AGTCAAAATATA
65 TGC-TTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTA
* * *
4671 AAACAATTCAACTTAAAATGAATTATGAGATTATAAAATCATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
4714 GAAAACGAGTAATAAGGCCTTTGAAGGAATGGGTGACTATAAATCGATTTTTC-TAGCCTATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * * * * * * *
4778 TGGTTTTTTCTTTACGTTTTTTGAGGCACACATTCAATTATAGTCTGTTTTAGAC-AAAAATATA
65 TGCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTA-ACTAAAAATGTA
* * * *
4842 AAAAAATTTAACCTAAAATCAAATATGAGATTACAAAACCATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * ** * *
4885 CAAAGTGAGTAATAAGGCTTTTGAAGGAATGAATGGCTATAAATAGACTTTTCTTACCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * *
4950 GGC-TTTTTCTTCACAT-TTTCTGAA-GCAGACAATCAATTCTAATATGTTTT-ACTAAAAATAT
66 -GCTTTTTTCTT--CATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * **
5011 AAAAAAATTAAACTTAATATCAATTACAAGATTAT-AAACCAATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC-ATT
* * * * * *
5055 T-AAGTGAGCAGTAATGCTTTTGAAGGAATGAGTGACTATATATGGACTTTTCTTACCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * * ** * * *
5119 -ATCTTTTTCTTCATGTTTTTTGAGATAGACATTTAATTGT-ACCTGTTTTAACCAAAATTATAA
66 GCT-TTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * **
5182 AAAAATTTAACTTAAAATCAATTGTGAGATTGCAAAACCATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * **
5224 TAAAGCTAGTAATAAGGTTTTTGAAGGAATGGGTGACTATAAATGGGC-TTTCCTAGTTAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* ** ** * * * *
5288 TGGC-TTTTTCTTTACATTTCTCGAGGCAGACATTCAATTGTAATCCT-TTTTAACTAAAAATAT
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAAT-ATGTTTTAACTAAAAATGT
* * *
5351 AAAAAAATAT-AACTTAAAATGAATTACGTGATTATAAAACCATT
128 AAAAAAAT-TCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * *
5395 TAAAGTGAGTAATAAGGTTTTTCAAAGAATAGGT-AGCTATAAATGGAC-TTCCTTTACTAATGA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGA-CTATAAATGGACTTTTC-TTACCAATGA
* * * * * * * *
5458 ATGGC-TTTTTCTTCATGTTTATCAAGGTAGATATTCAAGTATAGCT-TGGTCTAAC-CAAAATG
64 AT-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATG
* *
5520 TAAAAATAA-TCAACTTAAAATCAAGTATGAGATTACAAAACCATT
127 TAAAAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* ** * ** *
5565 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTTCCTATAAATAGACTTTT-TTTTCAATGAAC
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * *
5629 GATTTTTTCTTCATGTTTCTCAAGGCAGACAATCAATTCA-AATATGTTTTAATTAAAAATATAA
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATT-ATAATATGTTTTAACTAAAAATGTAA
* * *
5693 AAAAATTCAACTTCAAATCAATTACGAGATTATAAAACTATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
5735 TAAAGTGAGTAATAAGG-TTTTGAAGGCATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * * * * *
5798 TGGC-TTTCTCTTTATATTTCTCATGGTAGACATTCAATTATAATCTGTTTTAATTAAAAATATA
65 T-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTA
* * * **
5862 AAAAAATTCAACTTAAAATCAATTACGAGGTTACAAAATAATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
*** * * * * *
5905 TAAAAAAAGTAATAAGGCTTTGGAAAGTATGGGTGACTATAAAT-GAGCCTTT-TTAGTCAATGA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA-CTTTTCTTA-CCAATGA
* * * ********** *
5968 ATGGC-TTTTTCTTCATGTTT-TCCAAGGCAAACATTCAATNNNNNNNNNNTTTAACTAAAAATA
64 AT-GCTTTTTTCTTCATGTTTCT-TAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATG
* * *
6031 TAAAAAAATTCAACTTAAAATGAATTATGAGGTTACAAAACCATT
127 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
6076 TAAAGTGAGTAATAAGGCTTTGGAAGGAATGGGTGACTACAAATGGAGC-TTTCTCACCAA-GAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGA-CTTTTCTTACCAATG-A
* ** * * * *
6139 ATGAC-TTTTTCTTCACATG-TTC--AGAGACTA-ACATTCTGTTATAGTCTATTTGAA-TAAAA
64 ATG-CTTTTTTCTT--CATGTTTCTTA-AG-GTAGACATTCAATTATAATATGTTTTAACT-AAA
* * * * * *
6198 AATATTAAAAAATTTAATTTAAAATAAATTATGAGATAATAAAACCATT
123 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
6247 TTAAGCAAGTAATAAGGCCTTTGATA-GAATAGGTGATTATAAATGG-CTTTT-TTGCCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGA-AGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAA
* * * * * * *
6309 TGGCTCTTTCTT-TACAT-TTT-TTGAGGTAAAAATTCAATTATAGCT-TGTTTCAACCAAAAAT
65 T-GCT-TTT-TTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAAT
* **
6370 GTAAAACAATTCAACTTAAAATCAATTACAAGATTATAAAACCATT
126 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * *
6416 TAAGGCGAGTAATAAGGCTTTCGAAGGTATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * * *
6480 TGAC-TTTTTCTTCACGTTTCTTGAGGCA-AGCATTCAATTATAATCTGTTTTAACCAAAAAGGT
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGA-CATTCAATTATAATATGTTTTAACTAAAAATGT
* * *
6543 AAAAAAATTTAACTTAAAATCAATTATGTGATTATAAAACTATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * *
6587 TAAAGCGAGTAATAAGGCTTTTAAAGGAATGCGTGACTATAAATGGACTTTTCTTGCCTATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * ** * * * * * *
6652 GGTTTTTTTTTCACATTTTTTTAGGTAGACATTCAATTATAGCT-TGTTTTAGCCACAAATGTAA
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATGTAA
*
6716 AAAAATTGAACTTAAAAGT-AATTATGAGATT-TCAAAACCATT
130 AAAAATTCAACTTAAAA-TCAATTATGAGATTAT-AAAACCATT
* * * * * *
6758 TAAAGTGAGTAGTAAAGCTTTTGAAGGAATGGGTTG-CTATAAATAGACATTTTTTTATCAATGA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGG-TGACTATAAATGGAC-TTTTCTTACCAATGA
* * * * * * * * * **
6822 ATGGC-TTTTTATTCATATTTCTCAAGATAGATAATCAATTTTAATATATTTTAATTAAAAAAAT
64 AT-GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* *
6886 AAAAAAAATT-AACTTAAAATCAATTATGAGATTACAAAATCATT
128 -AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * ** *
6930 TAAAGC---TAGTAA-G--TTTGAAGCAATAGGTCACTATAAATACACTTTTCTTATCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * *
6989 GAC-TTTTTCTTCATGTTTCTCAAGGCAGACAATCAATTCTAATATATTTTAACTAAAAATATAA
66 G-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * * * *
7053 AAATATTCAACTTAAAATCAAGTATAAGATTACAAAACTATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
7095 TAAAGTGAGTAATAAGACTTTTGAAAGAATGGGTGGCTATAAATTGACTTTTCTTACTAATGAAG
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAA-
* * * * * * * * *
7160 GGC-TTTTTCTTCAAGTTTCCTGAGGTAGACAATCAATTCTAATATCTTTTAACAAAAAATATAA
65 TGCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * * *
7224 AAAAATTTAACTTAATATCAATTACGAGATTAT-AAACCAAT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * * *
7265 GAAAGCGAGCAGTATGACTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTGCCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* ** * * * * *
7330 ACCCTTTTCTTCATGGTT-TTAGGGGCAGAAATTCAATTAT-ATCTGTTTTAACTAAAAATGTAA
66 GCTTTTTTCTTCATGTTTCTTA-AGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * *
7393 AAAAATTCAACTTAAAATTAATTATGAGATTACAAAACTATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* ** * * * *
7435 TAAAGCGAGAAATAAGGCTTTTGAAGGCTTTGGTGATTATAAATAGACTTTTC-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * *
7499 TGGC-TTTTTCTTTATGTTT-TTCAAGATAGACATTCAATTA-CATATGTTTTAACCAAAAGTGT
65 T-GCTTTTTTCTTCATGTTTCTT-AAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGT
* * *
7561 AAAACAATTCAGCTTAAAATCAATTATGAGATTACAAAACCATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * *
7605 GAAAGTGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTT-TTAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
* * * * * * *
7669 TGAC-TTTTTCTTCACGTTTCCTGAGGTA-ACATTCAATTGTATTCTGTTTTAA-TAAAAAAAGT
65 TG-CTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACT-AAAAATGT
* *
7731 AAAATAATTCAACTTAAAATCAATTATGAGATTACAAAACCATT
128 AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* ** * * *
7775 TAAAGCGAGTAATAAGGCTTTTAAAGGAATGCATGACTATAAATGGACTTTTTTTGCCTATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * *
7840 GATTTTTTCTTCACGTTT-TTCAAGGTAGACATTCAATTATAGCT-TGTTTTAGCCAAAAATGTA
66 GCTTTTTTCTTCATGTTTCTT-AAGGTAGACATTCAATTATA-ATATGTTTTAACTAAAAATGTA
* * *
7903 AAAAAATTAAATTTAAAAT-AATTATAAGATT-TCAAAACCATT
129 AAAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATT
* ** * * * * * ***
7945 TAAAGTGAGTTGTTAGGCTTTTGAAGGAATGGCTTG-CTATAAATAGAATTTTTTTGTTAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGG-GTGACTATAAATGGACTTTTCTTACCAATGAA
* * * * * * * * **
8009 TGGTTTTTTTTTCATGTTTCTTGAGGCAGACAATCAATTCTACTATATTTTAACTAAAAAAATAA
65 TGCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* * *
8074 AAAAATTTAACTTAAAATCAATTATGAGATTACAAAACTATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * ** *
8116 TAAAGCGAGTAGTAAGGCTTTTGAAGGAATGGGTCG-CTATAAATAGACTTGTT-TGT-TTAATA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGT-GACTATAAATGGACTT-TTCT-TACCAATG
* * ** ** * * * *
8178 AATGGTTTTTTCTTCATGTTTCTCAAGACAGACAATT-AATTCGAATATATGTTAACCAAAAATA
63 AATGCTTTTTTCTTCATGTTTCTTAAGGTAGAC-ATTCAATTATAATATGTTTTAACTAAAAATG
* * * * *
8242 TAAAAATATTCAACTTAAAATCAAGTATGAGATTA-AAATCAACT
127 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* ** * * *
8286 T--A---A--AAT--GGCTTTTAAAGGAATAAGTGACTATAAATAGACTTTTCTTGCAAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
** * ** * * * * *
8342 GGC-TTTTTCTTCACCTTTCCTAATTTAGACATTCATTTTTAATATGTTTCAACCAAAAATATAA
66 -GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAA
* ********** *
8406 AAAAATTCAACTTAATATCAATTANNNNNNNNNNAAATCATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * * * * * * * ** *
8448 TAAAGTGAGCAATAAGGCCTTCGAAAGAATGAGTGACTACAAATGGACTTTTCTTGCGTATAAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * *** * * * *
8513 GCCTCTTTCTTCATGTTTTTTGATACAGACATTCAATTAT-ATCTGTTTTAACCAAAAATATAAT
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAAA
* * **********
8577 GAAATTTAACTTAAAATCAATTATGAGATTNNNNNNNNNNT
131 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* ** *
8618 TAAAGCGAGTAATAAGGCTTTCGAAGGTTTGGGTGACTATAAATGGACTTTT-TTAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTA-CCAATGAA
********** * * * ** * *
8682 TNNNNNNNNNNTCATGTTTCTCAAGGCAGACATTCAATTATAATATATTTGGAC-AAAAACTATG
65 TGCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAA-TGTA
* * **
8746 AAAAAATTCAACTTAAAATTAATTATGAGATTATAAAACTANN
129 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
******** * * * **
8789 NNNNNNNNGTAGTAAGGCTTTTGAAGGAATGGGTGACTATAAATAGAATTTTCCCACCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
* * * * * * *
8854 GCTTTTTTCTTCATGTTTCCTGAGGAAAATATTCAATTATAAT-TTTTTCTAACCAAAAATGT-A
66 GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTT-TAACTAAAAATGTAA
* * * *
8917 AAATATTGAACTTAAAATCAATTATGCGACTATAAAACCATT
130 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
* * *
8959 TAAAGTGAGTAATAAGGCTTTTAAAAGAATGGGTGAC
1 TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGAC
8996 NNNNNNNNNN
Statistics
Matches: 6797, Mismatches: 1567, Indels: 645
0.75 0.17 0.07
Matches are distributed among these distances:
156 2 0.00
157 110 0.02
158 5 0.00
159 6 0.00
160 8 0.00
161 102 0.02
162 33 0.00
163 106 0.02
164 14 0.00
165 106 0.02
166 27 0.00
167 55 0.01
168 198 0.03
169 1024 0.15
170 2163 0.32
171 2398 0.35
172 407 0.06
173 33 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
TAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTACCAATGAAT
GCTTTTTTCTTCATGTTTCTTAAGGTAGACATTCAATTATAATATGTTTTAACTAAAAATGTAAA
AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATT
Found at i:2479 original size:340 final size:337
Alignment explanation
Indices: 139--8995 Score: 5654
Period size: 341 Copynumber: 26.1 Consensus size: 337
129 NNNNNNNNNN
* * * *
139 TAAAGTGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTACTTAATGAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* ********** * *
204 GACTTTTTCTTCATGTTTCTCNNNNNNNNNNTTCAATTATAATCTGTTTTAAC-CAAAATCGTAC
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTG-TTTAACTAAAAAT-ATA-
********** * * *
268 AAAAATTCAACTTAAAATCAATTANNNNNNNNNNAAACTATTTAAAGCGCGTAATAAGGTTTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** ** * *
333 AAGAAAT-GAGTGGCTATCAATGGACTTTTCTTA-CCTGTGAATGGCCGTTTCTTCAAGTTTTTT
192 AAGGAATAG-GTGACTATAAATGGACTTTTC-TAGTCAATGAATGGCTTTTTCTTCATG-TTTCT
* * * * * * * *
396 AAGACAGACATTTAAGTAT-AGCTTGTTTT-AGCAAAAAATGTAAAAAACTTAAACTTAAAAACA
254 AAG-TAGACATTCAATTATAATC-TGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCA
**
459 ATTATGAGATT-TCAAAACTGTT
316 ATTATGAGATTAT-AAAACCATT
* * * * *
481 TAAAGCGAGTACTAAGGCTTTTAAAGGAATGAGTTG-CTATAAATATACTTTTTTTA-TCAATGA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATG-GGTGACTATAAATAGAC-TTTTCTAGTCAATGA
* * ** ** * * * *
544 A-CAGCTTTTTCTACACGTTTCTTGAGATAGACGA-TCAATTCTAATATATTTTAACCAAAAATA
63 ATGA-CTTTTTCTTCACGTTTCTCAAGGCAGAC-ATTCAATTATAATCT-GTTTAACTAAAAATA
* * **********
607 TAAAAAAGTCTAACTTAAAATCAATTACGAGATTATAAAACCATTTAAAGNNNNNNNNNNGGCTT
125 TAAAAAATTC-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * *
672 TTGAAGGAATAGGTGACTATAAATGGACATTTCTTA-CCAATGAAT-GCTTTTTTTTTCATGTTT
189 TTGAAGGAATAGGTGACTATAAATGGACTTTTC-TAGTCAATGAATGGC-TTTTTCTTCATG-TT
* * * * * * *
735 TTTAAGATAGACATTCAATTAT-TTATGATTTAA-CAAAAAATGTAAAAACATT-TAGTTGAAAA
251 TCTAAG-TAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTT-AAAA
* *
797 TTAATTATGAGATTACAAAACCATT
313 TCAATTATGAGATTATAAAACCATT
* * * * *
822 TAAAACGAGTAATAAGGCTGTCGAAGGTATGGGTGACTATAAATGGACCTTTCTAGTCAATGAAT
1 TAAAGCGAGTAATAAGGCT-TTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * ********** *
887 GGCTTTTTCTTCATGTTTCNNNNNNNNNNCATTCAATTATAATCTGTTTTAACAAAAAAATATAA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTG-TTTAAC-TAAAAATATAA
* *
952 AAACATTCAACTTAAAA-CGAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGATTTT
128 AAA-ATTCAACTTAAAATC-AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* ** * * * * *
1016 CAAGGAAT-GAGTGACTATAAATTAACTTTTCT-TTCCTATGAAT-GTTTTTTCTTCACGTTTTT
191 GAAGGAATAG-GTGACTATAAATGGACTTTTCTAGT-CAATGAATGGCTTTTTCTTCATG-TTTC
* * ** * ** * * *
1078 TAAGGTAAATATTCAATTATAGCCTATTTTAGCCAAAAATGTAAAACAATTTAACCT-AAATGCA
253 TAA-GTAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAAT-CA
* *
1142 ATTATGAGATTACAAAACTATT
316 ATTATGAGATTATAAAACCATT
* * * * *
1164 CAAAGCGTGTAATAAGACTTTTGAAGGAATGGGTGGCTATAAATAGACTTTTCTTG-CAAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTC-AATGAA
* * * * * * * *
1228 TGGCTTTTCCTTAACCTTT-TCTATGGCAGACATTCAATTCTAATATGTTTTAACCAAAAATATA
64 TGACTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATATA
* * * ** ** * * *
1292 AAAATTTTAACTTAATATCAATTACAAGATTATAAAAGAATTTAAAGTGAGCAACAAGGCTTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * * * * * *
1357 AAGGAATGGGCGACTCTAAATAGATTTTTTTTA-CCAAGGAATGTCTTTTTCTTCATGCTTTCGA
192 AAGGAATAGGTGACTATAAATGGA-CTTTTCTAGTCAATGAATGGCTTTTTCTTCATG-TTTCTA
*
1421 TA-TAGACATTCAATTAT-ATCTGTTTTAA-CTAAAAATGTAAAAAAATTTAACTTAAAATCAAT
255 -AGTAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAAT
************
1483 TATGAGATNNNNNNNNNNNN
318 TATGAGATTATAAAACCATT
*** * * ** * * *
1503 NNNAGCGAGTAATAAGGCTTTCAAAAGCTTGGGTGATTATCAATGGACTTTTCTAGTCAATGAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * * * *
1568 GACTTTTTCTTCATC-TTTCTCAAGGTAAACATTCAATTATAATATATTTTGACAAAAAATATGA
65 GACTTTTTCTTCA-CGTTTCTCAAGGCAGACATTCAATTATAATCT-GTTTAACTAAAAATAT-A
* * * * *
1632 AAACATTCAACCTAAAATCAATTATGAGATTATAAAACCGTTTAAAGTGAGTAGTAAGGCTTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
1697 AAGAAATGGGTGACTATAAATGGAAC-TGTCTTG-CTAATGAATGCCTTTTTCTTTATGTTTCTT
192 AAGGAATAGGTGACTATAAATGG-ACTTTTCTAGTC-AATGAATGGCTTTTTCTTCATGTTTC-T
* * * * * *
1760 AAGGCAGACATTCAATTATAATTTGTTTTAATCGAAAATATAAAAACATTGAACTTAAAATCAAT
254 AA-GTAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* * **
1825 TATGCGACTATAAAATAATT
318 TATGAGATTATAAAACCATT
* * * * * *
1845 TAAAGTGAGTAATAAGGCTTTTGAA-GAATGGGTGGCCATAAATGGACTTTTCTTGCCAATGAAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATG-AA
** * * * * * * * *
1909 T-TTTTTTTCTTCATGTTTCT-AGAGGTAAACATTCAATCA-AAGTATATTTTGACTAAAAATGT
64 TGACTTTTTCTTCACGTTTCTCA-AGGCAGACATTCAATTATAA-TCT-GTTTAACTAAAAATAT
* * * * * *
1971 AAAAAAATTTAACGTAACATCAATTATGAGATTACAAAACTATTTAAAGCGAGTAATAAGACTTT
126 -AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * ** * * *
2036 TAAATGAATGGGTGACTA-AAAGTAAACATTTC-ATGTCAACGAATGGCTTTTTCTTCATGCTTC
190 TGAAGGAATAGGTGACTATAAA-TGGACTTTTCTA-GTCAATGAATGGCTTTTTCTTCATG-TTT
* * * * *
2099 CCAAGGCAGACAATCAATTATAATTTTTTTTAA-CAAAAAATGTAAAAAAATTCAACTTAAAATC
252 CTAA-GTAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATC
* *
2163 AATTACGAGATTATAAAACCATG
315 AATTATGAGATTATAAAACCATT
* * * *
2186 TAAAGCGAGCAATAAGGCTGTGAAGGCATGGGTGACTATAAATAGACTTTTCTAGTAAATGAATG
1 TAAAGCGAGTAATAAGGCTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATG
* * * *
2251 ACTTTTTCTTTACGTTTCTCATGGCAGACATTCAATTATAATCTGTTTAATTAAAAATGTAGAAA
66 ACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTAACTAAAAATATA-AAA
* * ** *
2316 AATTCAACTTAAAATCAATTACGAGGTT-TCAAAATAATTTAAAGAGAGTAATAAGG-TTTTCGA
130 AATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATTTAAAGCGAGTAATAAGGCTTTT-GA
* * * * * * *
2379 AAGCATATGTGACTATAAATGGGCTTTTCCAGTCAATGAATGGTTTTTTCTTCACGTTTCCTAAG
193 AGGAATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTT-CTAAG
* * * * * *
2444 TCAAACATTCAATTATAATCTGTTTTAATAAAAAATGTAGAAAAATTTAACTTAAAATGAATTGT
257 T-AGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
2509 GAGATTATAAAACCATT
321 GAGATTATAAAACCATT
* * * * * *
2526 TAAAGAGAGTAATAAGGCTTTAGAAGGAATGGGTAACTACAAATGGAGC-TTTCTCG-CTAATAA
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGA-CTTTTCTAGTC-AATGA
* * ** *** *** *
2589 ATGGCTTTTTCTTCACATGCCT-AGAGATTGACATTTTGTTATAGTCTGTTTTAA--AAAAATAT
63 ATGACTTTTTCTTCACGTTTCTCA-AGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATA-
* * * * * *
2651 TAAAAAATTCAACTTAAAATGAATTATAAGATTATAAAATCATTTTAAGCAAGTAATAAGGCCTT
125 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * *
2716 TGATGGAATAGGTGACTATAAATGG-CTTTT-T-TTCCTAATGAATGGCTTTTTCTTTACGTTTC
190 TGAAGGAATAGGTGACTATAAATGGACTTTTCTAGT-C-AATGAATGGCTTTTTCTTCATGTTTC
* * * * * * *
2778 TCCAGGCAAAAATTCAATTAT-AGCTTGTTTCAA-CTAAAAATGTAAAAAAATTCAATTTAAAAT
253 T--AAGTAGACATTCAATTATAATC-TGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAAT
* * *
2841 CAATTACGACATTATAAAACTATT
314 CAATTATGAGATTATAAAACCATT
* * * * * * *
2865 TAAAGTGAGTACTAAGACTTTCAAAGGCATGGGTGGCTATAAATGGACTTTTCTAGTCAATGAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * *
2930 GACTTTTTTTTTCACGTTTC-CTAAGGCA-A-A--C-ATT-CAA-GT-TTTAA-TCAAAAATGTA
65 GAC-TTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCTGTTTAACT-AAAAATATA
* * * * * *
2985 GAAAAATTAAACTTAAAATCAATTACGAGGTT-TCAAAACAATTTAAAGAGAGAAATAAGGCTTT
127 -AAAAATTCAACTTAAAATCAATTATGAGATTAT-AAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * *
3049 CGAAAGTATAGGTGACTATAAAT-GAGCTTTTTTAGTCAATGAATGGCCTTTTCTTCATGTTTCC
190 TGAAGGAATAGGTGACTATAAATGGA-CTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTT-C
* * *
3113 TAAGGCAAACATTCAATTATAATCTGTTTTAA-CTAAAAATGTAAAAAAATTCAACTTAAAATGA
253 TAA-GTAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCA
* *
3177 ATTATTAGATTATAAAACTATT
316 ATTATGAGATTATAAAACCATT
* * * *
3199 TAAAGCGAGTAATAAGGCTTTGGAAGGAATGGGTGACTACAAATGGAGC-TTTCT-TTCTAATAA
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGA-CTTTTCTAGTC-AATGA
* * ** *** * *
3262 ATGGCTTTTTCTTCACATGCCT-AGAGATTGACATTCTATTATAGTCTGTTTTAA--AAAAATAT
63 ATGACTTTTTCTTCACGTTTCTCA-AGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATA-
* * * *
3324 TAAAAAATTTAACTTAAAATGAATTATGAGATTATAAAACCATTTTAAGCAAGTAATAAGG-TCT
125 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT-T
* * * *
3388 TTGATGGAAT-GAGTGACTATAAAT-GACTTTT-TTG-CTAATGAATGGCTTTTTCTTTACGTTT
189 TTGAAGGAATAG-GTGACTATAAATGGACTTTTCTAGTC-AATGAATGGCTTTTTCTTCATGTTT
* * * * *
3449 CTCGAG-GGACAAATTCAATTAT-AGCTTGTTTCAATAAAAAATGTAAAAAAATTCAACTTAAAA
252 CT-AAGTAGAC--ATTCAATTATAATC-TGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAA
* *
3512 TTAATTATGAGATTATAAAACTATT
313 TCAATTATGAGATTATAAAACCATT
* * * *
3537 TAAAGTG-GTAATAATGCTTTCGAAGGCATGGGTGACCATAAAT-GAACTTTTCTAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAG-ACTTTTCTAGTCAATGAA
* * * * * **
3600 TGACTTTTTCATCATGTTTCCCAAGGCAGACATTCAATTATAATCTATTTTTACTAAAAAGGTAA
64 TGACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCT-GTTTAACTAAAAATATAA
* * * ** * * * *
3665 AAACATTCAACTTAAAATTAATTATGAGGTTACAAAGTCATTTAATGCGATTTATAAGGCTTTTA
128 AAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * ** * * * * * * *
3730 AAAGAAT-GCGTAACTATAAATAAACTTTTCTTGCCTATGAATAGTTTTTTATTCATGTTTTTTA
192 AAGGAATAG-GTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATG-TTTCTA
* * * * ** * *
3794 AGGAAAACATTCAATTAT-AGCTTTTTTTAGCCAAAAATATAAAAAAAATTAAACTTAAAAAT-A
255 A-GTAGACATTCAATTATAATC-TGTTTTAATCAAAAATGT-AAAAAAATTCAACTT-AAAATCA
*
3857 ATTATGAGATTTTAAAACCATT
316 ATTATGAGATTATAAAACCATT
* * * *
3879 TAAAGCGAGTAGTAAGGCTTTTGAAGGAATGAGTTG-CTATAAATAGACTTTTTTTGTCAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATG-GGTGACTATAAATAGACTTTTCTAGTCAATGAA
* * * * * * * **
3943 TAACTTTTTCTTCATGTTTCTCTAGGTAGACAATCAATTCTAGAATAT-TTTAACCGAAAA-ATA
64 TGACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAA-T-TATAATCTGTTTAACTAAAAATATA
* *
4006 AAAAATTTAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
4071 AA-GATATGGGTAACTATAAATGGGCTTTTCTAGTCAATAAATAGCTTTTTCTTCATGTTTTTCA
192 AAGGA-ATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATG--TTTCT
* * ** *
4135 AAGTAGACATCCAAGTATAATCTGTTTTAAGGAAAAA--TATAAAAA---AA--T----T--A-T
254 AAGTAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
4186 ATGAGATTATAAAACCATT
319 ATGAGATTATAAAACCATT
* * * * * * **
4205 TAAAGCGAGTAATAACGCTTTGGAAGGAATAGGTGACTACAAGTAGACTTTTCTTGCCAACAAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * ** * * * *
4270 GCCTTTTTCTTTATATTTC-CAAAGGCTGACATTCTATTATAGTCTGTTTTAACCAAAAATATAA
65 GACTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATATAA
* * * * * *
4334 AACAATTCAACTTCAAATGAATTA-GAGATTATAAAACCAATTGAAGCAAGTAATAAGACTTTTG
128 AA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
4398 AAAGAAT-GAGTGATTATAAATGGACTTTTTTTGTCAATGAATGGCCTTTTT-TT-ACGTTTTTT
192 AAGGAATAG-GTGACTATAAATGGACTTTTCTAGTCAATGAATGG-CTTTTTCTTCATG-TTTCT
* * * *
4460 AAGGCAAAAATTCAATTATAAT-TGTTTTAA-CTAAAAATGTAAAAAAATTCAACTGAAAATCAA
254 AA-GTAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAA
* *
4523 TTACGAGATTATAAAATCATT
317 TTATGAGATTATAAAACCATT
* * * * * *
4544 TAAAGTGAGTACTAAAGCTTTTGAAGGCATGGGTGACTATAAAT-GAACTTTTTTACTCAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAG-ACTTTTCTAGTCAATGAA
* * * * *
4608 TCACTTTTTCTTCACGTTTCTCAAGACAGACATTCAATTATAATCTGTTTTAGTCAAAATATAAA
64 TGACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTAACTAAAAATATAAA
* * * * *
4673 ACAATTCAACTTAAAATGAATTATGAGATTATAAAATCATTGAAAACGAGTAATAAGGCCTTTGA
129 A-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
* * * * * * * * * *
4738 AGGAATGGGTGACTATAAATCGATTTTTCTAGCCTATGAATGGTTTTTTCTTTACGTTTTTTGAG
193 AGGAATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATG-TTTCT-AA
* * * * * * *
4803 GCACACATTCAATTATAGTCTGTTTTAGA-CAAAAATATAAAAAAATTTAACCTAAAATCAAATA
256 GTAGACATTCAATTATAATCTGTTTTA-ATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
*
4867 TGAGATTACAAAACCATT
320 TGAGATTATAAAACCATT
* * ** * *
4885 CAAAGTGAGTAATAAGGCTTTTGAAGGAATGAATGGCTATAAATAGACTTTTCTTA-CCAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAA
* * * * * * *
4949 TGGCTTTTTCTTCACATTTTCTGAA-GCAGACAATCAATTCTAATATGTTTTACTAAAAATATAA
64 TGACTTTTTCTTCAC-GTTTCTCAAGGCAGACATTCAATTATAATCTGTTTAACTAAAAATAT-A
* * ** * * * *
5013 AAAAATTAAACTTAATATCAATTACAAGATTAT-AAACCAATTT-AAGTGAGCAGTAATGCTTTT
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACC-ATTTAAAGCGAGTAATAAGGCTTTT
* * ** *
5076 GAAGGAAT-GAGTGACTATATATGGACTTTTCTTA-CCAATGAATATCTTTTTCTTCATGTTTTT
191 GAAGGAATAG-GTGACTATAAATGGACTTTTC-TAGTCAATGAATGGCTTTTTCTTCATG-TTTC
* * * * * * * *
5139 TGAGATAGACATTTAATTGT-ACCTGTTTTAACCAAAATTATAAAAAAATTTAACTTAAAATCAA
253 TAAG-TAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* **
5203 TTGTGAGATTGCAAAACCATT
317 TTATGAGATTATAAAACCATT
* * * * * *
5224 TAAAGCTAGTAATAAGGTTTTTGAAGGAATGGGTGACTATAAATGGGCTTTCCTAGTTAATGAAT
1 TAAAGCGAGTAATAAGG-CTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * * * *
5289 GGCTTTTTCTTTACATTTCTCGAGGCAGACATTCAATTGTAATCCTTTTTAACTAAAAATATAAA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAAT-CTGTTTAACTAAAAATAT-AA
* * * * * *
5354 AAAATAT-AACTTAAAATGAATTACGTGATTATAAAACCATTTAAAGTGAGTAATAAGGTTTTTC
128 AAAAT-TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * *
5418 AAAGAATAGGT-AGCTATAAATGGACTTCCTT-TACT-AATGAATGGCTTTTTCTTCATGTTTAT
192 AAGGAATAGGTGA-CTATAAATGGACTT--TTCTAGTCAATGAATGGCTTTTTCTTCATGTTTCT
* * * * * *
5480 CAAGGTAGATATTCAAGTAT-AGCTTGGTCTAA-CCAAAATGTAAAAATAA-TCAACTTAAAATC
254 -AA-GTAGACATTCAATTATAATC-TGTTTTAATCAAAAATGTAAAAA-AATTCAACTTAAAATC
* *
5542 AAGTATGAGATTACAAAACCATT
315 AATTATGAGATTATAAAACCATT
* ** ** *
5565 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGGTTCCTATAAATAGACTTTT-TTTTCAATGAAC
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * * *
5629 GATTTTTTCTTCATGTTTCTCAAGGCAGACAATCAATTCA-AATATGTTTTAATTAAAAATATAA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATT-ATAATCTG-TTTAACTAAAAATAT-A
* * * *
5693 AAAAATTCAACTTCAAATCAATTACGAGATTATAAAACTATTTAAAGTGAGTAATAAGG-TTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
5757 AAGGCATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATGGCTTTCTCTTTATATTTCTCAT
192 AAGGAATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTTCT-A-
* * *
5822 GGTAGACATTCAATTATAATCTGTTTTAATTAAAAATATAAAAAAATTCAACTTAAAATCAATTA
255 AGTAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTA
* * * **
5887 CGAGGTTACAAAATAATT
320 TGAGATTATAAAACCATT
*** * * *
5905 TAAAAAAAGTAATAAGGCTTTGGAAAGTATGGGTGACTATAAATGAGCCTTTT-TAGTCAATGAA
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAAT-AGACTTTTCTAGTCAATGAA
* * * *********
5969 TGGCTTTTTCTTCATGTTT-TCCAAGGCAAACATTCAATNNNNNNNNNNTTTAACTAAAAATATA
64 TGACTTTTTCTTCACGTTTCT-CAAGGCAGACATTCAAT-TATAATCTGTTTAACTAAAAATAT-
* * * * *
6033 AAAAAATTCAACTTAAAATGAATTATGAGGTTACAAAACCATTTAAAGTGAGTAATAAGGCTTTG
126 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * *
6098 GAAGGAATGGGTGACTACAAATGGAGC-TTTCTCA-CCAA-GAAATGACTTTTTCTTCACATG-T
191 GAAGGAATAGGTGACTATAAATGGA-CTTTTCT-AGTCAATG-AATGGCTTTTTCTT--CATGTT
** * * * * * * * *
6159 TC-AGAGACTA-ACATTCTGTTATAGTCTATTTGAATAAAAAATATTAAAAAATTTAATTTAAAA
251 TCTA-AG--TAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAA
* *
6222 TAAATTATGAGATAATAAAACCATT
313 TCAATTATGAGATTATAAAACCATT
* * * * * * *
6247 TTAAGCAAGTAATAAGGCCTTTGATA-GAATAGGTGATTATAAAT-GGCTTTT-TTGCCAATGAA
1 TAAAGCGAGTAATAAGG-CTTTGA-AGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAA
* * * * * ** * * * * * *
6309 TGGCTCTTTCTTTACATTTTTTGAGGTAAAAATTCAATTAT-AGCTTGTTTCAACCAAAAATGTA
64 TGACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATC-TGTTT-AACTAAAAATATA
** * *
6373 AAACAATTCAACTTAAAATCAATTACAAGATTATAAAACCATTTAAGGCGAGTAATAAGGCTTTC
127 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * *
6438 GAAGGTATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATGACTTTTTCTTCACGTTTCTTG
191 GAAGGAATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTTC-T-
* * * * *
6503 AGGCA-AGCATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTTAACTTAAAATCAAT
254 AAGTAGA-CATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
* *
6567 TATGTGATTATAAAACTATT
318 TATGAGATTATAAAACCATT
* * * * * *
6587 TAAAGCGAGTAATAAGGCTTTTAAAGGAATGCGTGACTATAAATGGACTTTTCTTGCCTATGAAT
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
** * * * ** * * * * * *
6652 GGTTTTTTTTTCACATTTTTTTAGGTAGACATTCAATTAT-AGCTTGTTTTAGCCACAAATGTAA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATC-TG-TTTAACTAAAAATAT-A
* * * *
6716 AAAAATTGAACTTAAAAGT-AATTATGAGATT-TCAAAACCATTTAAAGTGAGTAGTAAAGCTTT
127 AAAAATTCAACTTAAAA-TCAATTATGAGATTAT-AAAACCATTTAAAGCGAGTAATAAGGCTTT
* * * * *
6779 TGAAGGAATGGGTTG-CTATAAATAGACATTTTTTTA-TCAATGAATGGCTTTTTATTCATATTT
190 TGAAGGAATAGG-TGACTATAAATGGAC--TTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTT
* * * * * * **
6842 CTCAAGATAGATAATCAATTTTAATATATTTTAATTAAAAAAATAAAAAAAATT-AACTTAAAAT
252 CT-AAG-TAGACATTCAATTATAATCTGTTTTAATCAAAAATGT-AAAAAAATTCAACTTAAAAT
* *
6906 CAATTATGAGATTACAAAATCATT
314 CAATTATGAGATTATAAAACCATT
* * * * *
6930 TAAAGC---TAGTAA-G-TTTGAAGCAATAGGTCACTATAAATACACTTTTCTTA-TCAATGAAT
1 TAAAGCGAGTAATAAGGCTTTGAAGGAATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAAT
* * * * *
6989 GACTTTTTCTTCATGTTTCTCAAGGCAGACAATCAATTCTAATATATTTTAACTAAAAATATAAA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCT-GTTTAACTAAAAATATAAA
* * * * * *
7054 AATATTCAACTTAAAATCAAGTATAAGATTACAAAACTATTTAAAGTGAGTAATAAGACTTTTGA
129 AA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGA
* * * * * * *
7119 AAGAATGGGTGGCTATAAATTGACTTTTCTTACT-AATGAAGGGCTTTTTCTTCAAGTTTCCTGA
193 AGGAATAGGTGACTATAAATGGACTTTTC-TAGTCAATGAATGGCTTTTTCTTCATGTTT-CT-A
* * * * * * * *
7183 GGTAGACAATCAATTCTAATATCTTTTAA-CAAAAAATATAAAAAAATTTAACTTAATATCAATT
255 AGTAGACATTCAATTATAATCTGTTTTAATC-AAAAATGTAAAAAAATTCAACTTAAAATCAATT
* *
7247 ACGAGATTAT-AAACCAAT
319 ATGAGATTATAAAACCATT
* * * * * * * * *
7265 GAAAGCGAGCAGTATGACTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTGCCAATGAAT
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * * *
7330 -ACCCTTTTCTTCATGGTTT-T-AGGGGCAGAAATTCAATTAT-ATCTGTTTTAACTAAAAATGT
65 GA-CTTTTTCTTCA-CGTTTCTCA-AGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATAT
* * * *
7391 AAAAAAATTCAACTTAAAATTAATTATGAGATTACAAAACTATTTAAAGCGAGAAATAAGGCTTT
126 -AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT
** * * * * *
7456 TGAAGGCTTTGGTGATTATAAATAGACTTTTCTAGTCAATGAATGGCTTTTTCTTTATGTTTTTC
190 TGAAGGAATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTTCT-
* * * * * *
7521 AAGATAGACATTCAATTA-CATATGTTTTAACCAAAAGTGTAAAACAATTCAGCTTAAAATCAAT
254 AAG-TAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAAT
*
7585 TATGAGATTACAAAACCATT
318 TATGAGATTATAAAACCATT
* * * * * *
7605 GAAAGTGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTTTAGTCAATGAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
* * * * *
7670 GACTTTTTCTTCACGTTTC-CTGAGGTA-ACATTCAATTGTATTCTGTTTTAA-TAAAAAAAGTA
65 GACTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCTG-TTTAACTAAAAATA-TA
*
7732 AAATAATTCAACTTAAAATCAATTATGAGATTACAAAACCATTTAAAGCGAGTAATAAGGCTTTT
127 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * ** * *
7797 AAAGGAAT-GCATGACTATAAATGGACTTTTTTTGCCTATGAATGATTTTTTCTTCACGTTTTTC
191 GAAGGAATAG-GTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTTCT-
* ** * *
7861 AAGGTAGACATTCAATTAT-AGCTTGTTTTAGCCAAAAATGTAAAAAAATTAAATTTAAAAT-AA
254 AA-GTAGACATTCAATTATAATC-TGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAA
*
7924 TTATAAGATT-TCAAAACCATT
317 TTATGAGATTAT-AAAACCATT
* ** * * * * * *
7945 TAAAGTGAGTTGTTAGGCTTTTGAAGGAATGGCTTG-CTATAAATAGAATTTTTTTGTTAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGG-GTGACTATAAATAGACTTTTCTAGTCAATGAA
** * * ** * * * *
8009 TGGTTTTTTTTTCATGTTTCTTGAGGCAGACAATCAATTCTACTATAT-TTTAACTAAAAAAATA
64 TGACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATA--ATCTGTTTAACTAAAAATAT-
* * * *
8073 AAAAAATTTAACTTAAAATCAATTATGAGATTACAAAACTATTTAAAGCGAGTAGTAAGGCTTTT
126 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * *
8138 GAAGGAATGGGTCG-CTATAAATAGACTTGTT-T-GTTTAATAAATGGTTTTTTCTTCATGTTTC
191 GAAGGAATAGGT-GACTATAAATGGACTT-TTCTAG-TCAATGAATGGCTTTTTCTTCATGTTTC
* ** * * * * * *
8200 TCAAGACAGACAATT-AATTCGAATATATGTTAACCAAAAATATAAAAATATTCAACTTAAAATC
253 T-AAG-TAGAC-ATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATC
* * * *
8264 AAGTATGAGATTA-AAATCAACT
315 AATTATGAGATTATAAAACCATT
* ** *
8286 T--A---A--AAT--GGCTTTTAAAGGAATAAGTGACTATAAATAGACTTTTCTTG-CAAATGAA
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTC-AATGAA
* * *** * * * *
8341 TGGCTTTTTCTTCACCTTTC-CTAATTTAGACATTCATTTTTAATATGTTTCAACCAAAAATATA
64 TGACTTTTTCTTCACGTTTCTC-AAGGCAGACATTCAATTATAATCTGTTT-AACTAAAAATAT-
* ********** * * * * *
8405 AAAAAATTCAACTTAATATCAATTANNNNNNNNNNAAATCATTTAAAGTGAGCAATAAGGCCTTC
126 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * * *
8470 GAAAGAAT-GAGTGACTACAAATGGACTTTTCTTG-CGTATAAATGCCTCTTTCTTCATGTTTTT
191 GAAGGAATAG-GTGACTATAAATGGACTTTTCTAGTC-AATGAATGGCTTTTTCTTCATG-TTTC
* * * ** *
8533 TGATA-CAGACATTCAATTAT-ATCTGTTTTAACCAAAAATATAATGAAATTTAACTTAAAATCA
253 T-A-AGTAGACATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCA
**********
8596 ATTATGAGATTNNNNNNNNNNT
316 ATTATGAGATTATAAAACCATT
** * *
8618 TAAAGCGAGTAATAAGGCTTTCGAAGGTTTGGGTGACTATAAATGGACTTTTTTAGTCAATGAAT
1 TAAAGCGAGTAATAAGGCTTT-GAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAAT
********** * * * *
8683 NNNNNNNNNNTCATGTTTCTCAAGGCAGACATTCAATTATAATATATTTGGAC-AAAAACTATGA
65 GACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTT-AACTAAAAA-TAT-A
* * ********** *
8747 AAAAATTCAACTTAAAATTAATTATGAGATTATAAAACTANNNNNNNNNNGTAGTAAGGCTTTTG
127 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * *
8812 AAGGAATGGGTGACTATAAATAGAATTTTCCCA-CCAATGAAT-GCTTTTTTCTTCATGTTTCCT
192 AAGGAATAGGTGACTATAAATGGACTTTT-CTAGTCAATGAATGGC-TTTTTCTTCATGTTT-CT
* * * * * * * *
8875 GAGGAAAATATTCAATTATAAT-TTTTTCTAACCAAAAATGT-AAAATATTGAACTTAAAATCAA
254 -AAGTAGACATTCAATTATAATCTGTTT-TAATCAAAAATGTAAAAAAATTCAACTTAAAATCAA
* *
8938 TTATGCGACTATAAAACCATT
317 TTATGAGATTATAAAACCATT
* * *
8959 TAAAGTGAGTAATAAGGCTTTTAAAAGAATGGGTGAC
1 TAAAGCGAGTAATAAGGC-TTTGAAGGAATGGGTGAC
8996 NNNNNNNNNN
Statistics
Matches: 6685, Mismatches: 1465, Indels: 731
0.75 0.16 0.08
Matches are distributed among these distances:
324 5 0.00
325 27 0.00
326 119 0.02
327 83 0.01
328 27 0.00
330 6 0.00
331 63 0.01
332 180 0.03
333 99 0.01
334 155 0.02
335 36 0.01
336 91 0.01
337 239 0.04
338 191 0.03
339 852 0.13
340 1621 0.24
341 1741 0.26
342 892 0.13
343 226 0.03
344 26 0.00
345 6 0.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (337 bp):
TAAAGCGAGTAATAAGGCTTTGAAGGAATGGGTGACTATAAATAGACTTTTCTAGTCAATGAATG
ACTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTAACTAAAAATATAAAAA
ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGG
AATAGGTGACTATAAATGGACTTTTCTAGTCAATGAATGGCTTTTTCTTCATGTTTCTAAGTAGA
CATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
TATAAAACCATT
Found at i:4316 original size:157 final size:157
Alignment explanation
Indices: 4028--4340 Score: 364
Period size: 157 Copynumber: 2.0 Consensus size: 157
4018 TAAAATCAAT
* * * * *
4028 TATGAGATTACAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGATATGGGTAACTATAAATG
1 TATGAGATTACAAAACCATTTAAAGCGAGTAATAACGCTTTGGAAGATATAGGTAACTACAAATA
* * * * *
4093 GGCTTTTCTAGTCAATAAATAGCTTTTTCTTCATGTTTTTCAAAGTAGACATCCAAGTATAATCT
66 GACTTTTCTAGCCAACAAATAGCTTTTTCTTCATGATTTCCAAAGTAGACATCCAAGTATAATCT
**
4158 GTTTTAAGGAAAAATATAAAAAAATTA
131 GTTTTAACCAAAAATATAAAAAAATTA
* * *
4185 TATGAGATTATAAAACCATTTAAAGCGAGTAATAACGCTTTGGAAGGA-ATAGGTGACTACAAGT
1 TATGAGATTACAAAACCATTTAAAGCGAGTAATAACGCTTTGGAA-GATATAGGTAACTACAAAT
* * * * *
4249 AGACTTTTCTTGCCAACAAAT-GCCTTTTTCTTTAT-ATTTCCAAAGGCT-GACATTCTATTATA
65 AGACTTTTCTAGCCAACAAATAG-CTTTTTCTTCATGATTTCCAAA-G-TAGACATCCAAGTATA
* *
4311 GTCTGTTTTAACCAAAAATATAAAACAATT
127 ATCTGTTTTAACCAAAAATATAAAAAAATT
4341 CAACTTCAAA
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
156 8 0.06
157 119 0.92
158 3 0.02
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (157 bp):
TATGAGATTACAAAACCATTTAAAGCGAGTAATAACGCTTTGGAAGATATAGGTAACTACAAATA
GACTTTTCTAGCCAACAAATAGCTTTTTCTTCATGATTTCCAAAGTAGACATCCAAGTATAATCT
GTTTTAACCAAAAATATAAAAAAATTA
Found at i:9507 original size:169 final size:161
Alignment explanation
Indices: 9226--9556 Score: 389
Period size: 169 Copynumber: 2.0 Consensus size: 161
9216 ATGAGATTAC
*
9226 AAAACCATTTAAAGCGAGCAATAAGACTTTTGAAAGAATGGGTGACTAAAAATAGACTTTTCTTG
1 AAAACCATTTAAAGCGAGCAATAAGACTTTTGAAAGAATGGGTGACTAAAAATAGACTTTTCTAG
* *
9291 TTAATGAATGACTTTTTCTTCACGTTTCCTAAGGCAAACAATCAATTATAATTTGTTTTAACAAA
66 TTAATGAATGACTTTTTCTTAACGTTTCCTAAGGCAAACAATCAATTATAACTTGTTTTAACAAA
* *
9356 AAATGTAAAA-AATTCAACTTAAAATCAATNNNNNNNNNNT
131 AAATGTAAAACAATTCAACTCAAAAACAAT----------T
* * * * * *
9396 AAAACCATTTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATGGACTTTTCTAG
1 AAAACCATTTAAAGCGAGCAATAAGACTTTTGAAAGAATGGGTGACTAAAAATAGACTTTTCTAG
* * * * *
9460 TTAATGAATGACTTTTTCTTAATGTTTTCC-AAGGCAAACATTCAATTATAGCTTGTTTTAGCCA
66 TTAATGAATGACTTTTTCTTAACG-TTTCCTAAGGCAAACAATCAATTATAACTTGTTTTAACAA
*
9524 AAAATGTAAAACAATTGAACTCAAAAACAATT
130 AAAATGTAAAACAATTCAACTCAAAAACAATT
9556 A
1 A
9557 TGAGATTTTA
Statistics
Matches: 142, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
160 2 0.01
169 94 0.66
170 46 0.32
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.32
Consensus pattern (161 bp):
AAAACCATTTAAAGCGAGCAATAAGACTTTTGAAAGAATGGGTGACTAAAAATAGACTTTTCTAG
TTAATGAATGACTTTTTCTTAACGTTTCCTAAGGCAAACAATCAATTATAACTTGTTTTAACAAA
AAATGTAAAACAATTCAACTCAAAAACAATT
Found at i:9965 original size:171 final size:170
Alignment explanation
Indices: 9215--10084 Score: 673
Period size: 171 Copynumber: 5.1 Consensus size: 170
9205 NNNNNNNNNN
* * * * * * * *
9215 TATGAGATTACAAAACCATTTAAAGCGAGCAATAAGACTTTTGAAAGAATGGGTGACTAAAAATA
1 TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGTGACTATAAATA
* * * * * *
9280 GACTTTTCTTGTT-AATGAATGACTTTTTCTTCACGTTTC-CTAAGGCAAACAATCAATTATAAT
66 GACTTTT-TT-TTCAATAAATGGCTTTTTCTTCACATTTCTC-AAGGTAGACAATCAATTCTAAT
* * * *
9343 TTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAAAATCAAT
128 ATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
*********** * * * * * *
9385 NNNNNNNNNNTAAAACCATTTAAAGCGAGTAATAAGGC-TTTGAAGGCATGGGTGACTATAAATG
1 TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGTGACTATAAATA
* * * * * * * *
9449 GACTTTTCTAGTT-AATGAATGACTTTTTCTT-A-ATGTTTTCCAAGGCAAACATTCAATTATAG
66 GACTTTT-T-TTTCAATAAATGGCTTTTTCTTCACAT-TTCT-CAAGGTAGACAATCAATTCTA-
* * * * * * * * *
9511 CT-TGTTTTAGCCAAAAATGTAAAACAATTGAACTCAAAAACAAT
126 ATATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
** * * *
9555 TATGAGATTTTAAAACCATTTAAAGTGAGTTGTAAGGCTTTTGAAGGAATAGGTTACTATAAATA
1 TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGTGACTATAAATA
* * *
9620 GACTTTTTTTGTCAATGAATGGCTTTTTTTTTTTACATTTCTCAAGGTAGACAATCAATTCTAAT
66 GACTTTTTTT-TCAATAAATGGC--TTTTTCTTCACATTTCTCAAGGTAGACAATCAATTCTAAT
* * * *
9685 ATATTTTGACCAAAAAAATAAAAAAATTTAACTTAAAATCAAT
128 ATATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
* ** * *
9728 TATG-GATTACAATACCATTCAAAACGAGTAGTGAGGCTTTTGAAGGAATGGGTCG-CTATAAAT
1 TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGT-GACTATAAAT
* * * *
9791 AGACTTTTTTGTTCAATAAATGGCTTTGTCTTCATATTTCTCAAGGAAGACAATCAATTCGAATA
65 AGACTTTTTT-TTCAATAAATGGCTTTTTCTTCACATTTCTCAAGGTAGACAATCAATTCTAATA
* * *
9856 TATTTTAATTAAAAATATAAAAATATTCAACTTAAAATCAAG
129 TATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
* * * ** *
9898 TATGAGATTACAAAATCATTCAAAGTGTGTAATAAGGCTTTTGAACAAATAAGTGACTATAAATA
1 TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGTGACTATAAATA
* * * * * * *
9963 GACTTTTCTTACAAATCAATAGCTTTTTCTTCACCTTTC-CTAAGGTAGACATTCAATTTTAATA
66 GACTTTTTTTTC-AATAAATGGCTTTTTCTTCACATTTCTC-AAGGTAGACAATCAATTCTAATA
* **
10027 TGTTTTAACTAAAAATATAAAAAAATTCAACTTAGTATCAAT
129 TATTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
** *
10069 TACAAGATTATAAAAC
1 TATGAGATTACAAAAC
10085 NNNNNNNNNN
Statistics
Matches: 561, Mismatches: 119, Indels: 39
0.78 0.17 0.05
Matches are distributed among these distances:
167 1 0.00
168 3 0.01
169 87 0.16
170 151 0.27
171 181 0.32
172 70 0.12
173 62 0.11
174 4 0.01
175 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
TATGAGATTACAAAACCATTCAAAGTGAGTAGTAAGGCTTTTGAAGGAATAGGTGACTATAAATA
GACTTTTTTTTCAATAAATGGCTTTTTCTTCACATTTCTCAAGGTAGACAATCAATTCTAATATA
TTTTAACTAAAAATATAAAAAAATTCAACTTAAAATCAAT
Done.