Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399890.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3124.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5186
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.17

Warning! 2850 characters in sequence are not A, C, G, or T


Found at i:2101 original size:171 final size:170

Alignment explanation


    Indices: 1795--2148  Score: 408
    Period size: 171  Copynumber: 2.1  Consensus size: 170

       1785 TTAGTTTCTG

                                 *    *   *                                  
       1795 TAAAAATAGATTATAATTGAATGTCTGCCTGAAGAAACCAGAACAAAAAGATATCCATTGGAAAG
          1 TAAAAATAGATTATAATTGAACGTCTACCTCAAGAAACCAGAACAAAAAGATATCCATTGGAAAG

                   *       *             *        *  *        **********     
       1860 AAAAGTCTATTTATAGTCACCAACGCCTTGAAAAGCCTTATTACTCGCTTNNNNNNNNNNTATAA
         66 AAAAGTCAATTTATAATCACCAACGCCTTCAAAAGCCTCATCACTCGCTTTTAATGATTTTATAA

                       *                               
       1925 CCTCATAATTGGTTTTAAGTTT-AATTGTTTTTCA-ATTTTTA
        131 CCTCATAATTGATTTTAA-TTTGAATT-TTTTT-ATATTTTTA

                                                   *                      *  
       1966 TAAAAATAGATTATAATTGAACGTCTACCTCAAGAAA-CTGAAACAAAAAGATATCCATTGGCAA
          1 TAAAAATAGATTATAATTGAACGTCTACCTCAAGAAACCAG-AACAAAAAGATATCCATTGGAAA

                *                 * * *                                     *
       2030 GAAATGTCAATTTATAATCACCCAGGTCTTCAAAAGCCTCATCACTCGCTTTTAATGATTTTATG
         65 GAAAAGTCAATTTATAATCACCAACGCCTTCAAAAGCCTCATCACTCGCTTTTAATGATTTTATA

                                                     
       2095 ACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTTTA
        130 ACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTTTA

             *           
       2136 TTAAAATAGATTA
          1 TAAAAATAGATTA

       2149 NNNNNNNNNN


Statistics
Matches: 153,  Mismatches: 27, Indels: 7
        0.82            0.14        0.04

Matches are distributed among these distances:
 169    1  0.01
 170   29  0.19
 171  123  0.80

ACGTcount: A:0.37, C:0.14, G:0.11, T:0.35


Consensus pattern (170 bp):   
TAAAAATAGATTATAATTGAACGTCTACCTCAAGAAACCAGAACAAAAAGATATCCATTGGAAAG
AAAAGTCAATTTATAATCACCAACGCCTTCAAAAGCCTCATCACTCGCTTTTAATGATTTTATAA
CCTCATAATTGATTTTAATTTGAATTTTTTTATATTTTTA
Done.