Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399900.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3134.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3740
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.25

Warning! 1191 characters in sequence are not A, C, G, or T


Found at i:822 original size:171 final size:171

Alignment explanation


    Indices: 376--1652  Score: 888
    Period size: 171  Copynumber: 7.5  Consensus size: 171

        366 TTGTTAAATG

                 *               *               **           *     **       
        376 TGAAGGAAAAGCCATTCATTGACAAGAAAAGTCCATTCGTAGTCACCCATTCCTTCGTAAGCCTT
          1 TGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCTT

             *    *                     **********                           
        441 ACTACTTGCTTTAAATGGTTTTATAATCNNNNNNNNNNTTTTAAGTTGAATATTTTTACATTTTT
         66 ATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTTTT

            *                                  *        
        506 AGTTAAAACAGATTATAATT-AAGTGT-TCACC-TCAGGAAACA
        131 GGTTAAAACAGATTATAATTGAA-TGTCT-ACCTTGA-GAAACA

             *       *                                          *     *      
        547 TAAAGAAAAGGCCATTCATTAGG-AAGAAATA-TCCATTTATAGTCACCCATACCTTCTAAAGCC
          1 TGAAGAAAAAGCCATTCATT-GGCAAGAAA-AGTCCATTTATAGTCACCCATGCCTTCCAAAGCC

                           **********         *                          *   
        610 TTATTACTCGCTTTANNNNNNNNNNTAATCTCATTATTGATTTTAAGTTGAATATTTTTACCTTT
         64 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTT

               *       *            *          ***       
        675 TTAAG-TAAAATAGATTGA-AATTCAATGTCTACCACAAGAAACA
        129 TT-GGTTAAAACAGATT-ATAATTGAATGTCTACCTTGAGAAACA

                                  *         *     *                ***       
        718 TGAAGAAAAAGCCATTCATTGGTAAGAAAAGTTCATTTGTAGTCACCCATGCCTTTGGAAGCCTT
          1 TGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCTT

                  *         *         *    *              **          *     *
        783 ATTACTTGCTTTAAATTGTTTTATAACCTCACAATTGATTTTAAGTCAAATATTTTTATATTTCC
         66 ATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTT-T

                             **                *  * **
        848 T-GTTAAAACAGATTATGTTTGAATGTCTACCTTGGGAGATG
        130 TGGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

                        *      *             *                               
        889 TGAAGAAAAAGCTATTCA-AGTGCAAGAAAAGTTCATTT-TCAGTCACCCATGCCTTCCAAAGCC
          1 TGAAGAAAAAGCCATTCATTG-GCAAGAAAAGTCCATTTAT-AGTCACCCATGCCTTCCAAAGCC

                           *                    *      *          *          
        952 TTATTACTCG-TGTTGAATGGTTTTATAATCTCATAGTTGATTATAAGTT-AATTTGTTTTACAT
         64 TTATTACTCGCT-TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATAT-TTTTACAT

                   *    *             *   * **           
       1015 TTTTGGTCAAAATAGATTATAATTGAGTGTTTGTCTTGAGAAACA
        127 TTTTGGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

                      *                           *             * *          
       1060 TGAA-AAATATG--ATTCATTGGCAAAGAAAAGTCCATATATAGTCACCCATTCGTTCCAAAGCC
          1 TGAAGAAA-AAGCCATTCATTGGC-AAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCC

                     *              *  *                   *      *          
       1122 TTATTACTCACTTTAAATGGTTTTCTAGTCTCATAATTGATTTTAAGATGAAT-GTTTTACATTT
         64 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTT

                 *      *           * * * * *          
       1186 TTGGTCAAAACACATTATAATTGAGTATTTGCTTTGAGAAACA
        129 TTGGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

                                 * *                                         
       1229 TGAAGAAAAATG-CATTCATTTGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCT
          1 TGAAGAAAAA-GCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCT

              **********************                          * *    *       
       1293 TANNNNNNNNNNNNNNNNNNNNNNTAATCTCATAATTGATTTTAAGTTGAGTCTTTTCACATTTT
         65 TATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTTT

            *        *      **   *              *     
       1358 CGGTTAAAATAGATTAGCATTCAATGTCTACCTTGATAAACA
        130 TGGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

                       *                *          *            *   **       
       1400 TGAAGAAAAAGTCATTCATT-GCAATGACAAGTCCATTTGTAGTCACCCATGGCTTTGAAAGCCT
          1 TGAAGAAAAAGCCATTCATTGGCAA-GAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCT

                             *      *  * *                        *          
       1464 TATTACTCGCTTTAAATAGTTTTACAACCCCATAATTGATTTTAAGTTGAAGT-GTTTTACATTT
         65 TATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TATTTTTACATTT

              *                     *   *    ***       
       1528 TTTGTTAAAACAGATTATAATTGAGTGTTTACCCCAAGAAACA
        129 TTGGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

                     * *            *                                 **     
       1571 TGAAGGGAACATG--ATTCATTGGGAA-AAGAAGTCCATTTATAGTCACCCATGCCTTTAAAAGC
          1 TGAA--GAAAAAGCCATTCATTGGCAAGAA-AAGTCCATTTATAGTCACCCATGCCTTCCAAAGC

                     *          
       1633 CTTATTACTTGCTTTAAATG
         63 CTTATTACTCGCTTTAAATG

       1653 NNNNNNNNNN


Statistics
Matches: 850,  Mismatches: 222, Indels: 68
        0.75            0.19        0.06

Matches are distributed among these distances:
 169   60  0.07
 170  165  0.19
 171  606  0.71
 172   14  0.02
 173    5  0.01

ACGTcount: A:0.32, C:0.15, G:0.14, T:0.35


Consensus pattern (171 bp):   
TGAAGAAAAAGCCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCCAAAGCCTT
ATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATATTTTTACATTTTT
GGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAACA

Done.