Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397518.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3636.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10461
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.29
Warning! 2189 characters in sequence are not A, C, G, or T
Found at i:1992 original size:171 final size:171
Alignment explanation
Indices: 848--4538 Score: 2087
Period size: 171 Copynumber: 21.6 Consensus size: 171
838 NNNNNNNNNN
* * * * * **
848 TGAATGCTTTTTTCTTCACGTTTCTA-GAGGTAGACATTCAATTATTGTCTAGTTGAACCAAAAA
1 TGAATGCTTTTTTCTTCATGTTTC-ACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
* * * * *****
912 TGAAAAAAAATTCACCTCAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATNNNNN
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
***** * * *
977 NNNNNAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
**** * * *********
1019 TGAAT-CTCTTTTTCTTCATGTTTTGTGAGATAGATATTCAATTATAGTCT-GTTNNNNNNNNNN
1 TGAATGCT-TTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTT-TAATGAAAA
* * * *
1082 ATGTAAAAAAATTTAACTTAAAATGAGTTATGAGATTATAAAA-CAGTTTAAAGCGAGTAATAAC
64 ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCGAGTAATAAG
* *
1146 ACTTTTGAAGGAATGGGTGACTAT-AATGGACTTTTCTT-CTCAA
128 GCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAA
* * * * **
1189 TGAGTGACTGTTTT-TGCATGTTTC-CTAAGGCA-ACCATTCAATTATTA-TCTTTTTTAATGAA
1 TGAATG-CTTTTTTCTTCATGTTTCAC-AAGGTAGA-CATTCAATTA-TAGTCTGGTTTAATGAA
* * * *
1250 AAATATAAAAATATTCAACTT-AAATCAATTGTGAGATTATAAAACAATTTAAAGCGAGTAATAA
62 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
********** *
1314 GGCTTTTG-AAGAAATNNNNNNNNNNAAATGGACTTTTCTTGTCAA
127 GGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAA
** * * * * **
1359 TGAATGCTTTTTTCTTCACATTTCTA-GATGTAGACATTAAATTATTGTCTGGTTTAACAAAAAA
1 TGAATGCTTTTTTCTTCATGTTTC-ACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
* * **********
1423 TGTAGAAAAATTCCACTTAAAATCAATTATGAGATTATAAAACCATTTANNNNNNNNNNTAAGGC
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ** * *
1488 TTTTGAAGGAATGGGTGACTATAAATAAAATTTTCTTGTCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * *** * ** *
1530 TAAATG-TGTTTTTCTTCACGTTTCTTGAGGCAGACATTCAATTATAGTCTATTTTAATG-AAAN
1 TGAATGCT-TTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
************** * *
1593 NNNNNNNNNNNNNNACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAA-GA
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * *
1657 TTTTGAAGGAATAGGTGACTATAAATGGACTATTCTTGTCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * * * * *
1699 TGAATACTTTTCTCTTTACGTTTCA-AGAGGTAGACATTCAATTATTGTCTGGTTGAATGAAAAA
1 TGAATGCTTTTTTCTTCATGTTTCACA-AGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
* ********** * *
1763 TGAAAAAAAATTCAACTTAAAATCAATTANNNNNNNNNNAAACTATTTCAAGCGAGTAATAAGGC
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *
1828 TTTTGAAACAATGGGTGACTATAAATGGATTTTTCTTGCCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * * **
1870 TGAAT-CTGTTTTTCTTCGTGTTTCACAAGGCA-ACTATTCAATTAAAGTCTATTTTAATGAAAA
1 TGAATGCT-TTTTTCTTCATGTTTCACAAGGTAGAC-ATTCAATTATAGTCTGGTTTAATGAAAA
* * * * * *
1933 ATGTAAAACAGTTCAACTTAAAATTATTTATGAGATTATAAAACCATTTAAAACGAGTAATAAGT
64 ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* **********
1998 CTTTTGAAGGANNNNNNNNNNATAAATGGACTTTTCTT-CTCAA
129 CTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAA
* **
2041 TGAATGCTTTTTTCTT--TGCATTTCTAGAAGG-AGACATTCAATTATTA-TCTGGTTTAACCAA
1 TGAATGCTTTTTTCTTCATG--TTTC-ACAAGGTAGACATTCAATTA-TAGTCTGGTTTAATGAA
* *
2102 AAATGTAAAAAAAGTC-ACTTTAAAATCAATTATGAGATTATAAAA-CATTTTAAAGCAAGTAAT
62 AAATGTAAAAAAATTCAAC-TTAAAATCAATTATGAGATTATAAAACCA-TTTAAAGCGAGTAAT
* * * *
2165 AAGGCTTTTG-ACGTAATAGGTGAGTGTAAATGGACTTTTCTTGCCAA
125 AAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * * * * * * *
2212 TGAATGCTCTTTTGTTCACGTTTTTA-AAAGAAGACATTCAATTATTGTCTGGTTTAATTAAAAA
1 TGAATGCTTTTTTCTTCATG-TTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
**********
2276 TGTAAAAAAAATT-AACTTAAAATCAATTNNNNNNNNNNAAAACCATTTAAAGCGAGTAATAAGG
65 TGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * * * ****
2340 C-TTTCAAAGGAATGAGTGACTGTAAATGGACATTTCTCATTAA
129 CTTTTGAAA-GAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* *
2383 TGAATG-TGTTTTTCTTCATGTTTCTCTAGGTAGACATTCAATTATAGTCTGGTTTAACT-AAAA
1 TGAATGCT-TTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAA-TGAAAA
* * * * * **
2446 ATGTAAAACAAATTCAATTTAAAATCAATTATTAGGTTACAAAAGCATTTAAAGTAAGTAATAAG
64 ATGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
*** * *
2511 GCTTTTGAAAGAATATATGACTATAAATGGACTTTT-TTTCCTAC
128 GCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCC-AA
* *
2555 TGAATTCCTTTTTT-TTACA--TTTCACAAGGTAGACATTCAATTATAGTCT-GTTTAATAAAAA
1 TGAA-TGCTTTTTTCTT-CATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAAT-GAAA
* * * * * * * * * *
2616 AATATAAAAAAATTTAATTTAAAATCGATTACGAGATTACAAAACAATTTCAAGCGAGCAAAAAG
63 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* *
2681 GCTTTT-AAAGGAATGGGTGA-TAACAAATGGACTTTTGTTGCCAA
128 GCTTTTGAAA-GAATGGGTGACT-ATAAATGGACTTTTCTTGCCAA
* * * * * * ** ** * *
2725 TAAATGCCTTTTTCTTCTTATTTCTA-GAGTTAGACATTCAATTGCAGTCTATTTTAACGACAAA
1 TGAATGCTTTTTTCTTCATGTTTC-ACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
********** * * * *
2789 TGTAAAAAAATTCAACTTAANNNNNNNNNNGAGATTATAAAACAATTAAAAGCTAGTAATAAGAC
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ** *
2854 TTTTGAAGGAATGGACGACTATAAATGGGCTTTTCTT-CTCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAA
* * * * * **
2896 TGAGTGACTTTTTT-TACACGTTTCCCAAGGCA-AGCATTCAATTATTA-TCTTTTTTAATGAAA
1 TGAATG-CTTTTTTCTTCATGTTTCACAAGGTAGA-CATTCAATTA-TAGTCTGGTTTAATGAAA
* * * *
2958 AATATAAAAAAATTCAACTTAAAATCAATTGTGGGATTAT-AAACTATTTAAAGCGAGTAATAAG
63 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * *
3022 GC-TTTCAAAGGAATGGGTGACTATAAATAAGAC-TTTCTTTGTCAA
128 GCTTTTGAAA-GAATGGGTGACTATAAAT-GGACTTTTC-TTGCCAA
** * * * * *
3067 TGAATGC--TTTTCTTCACATTTCA-GAGGTAGACACTC-ATTAATTGTC-AGTTTAATAAAAAA
1 TGAATGCTTTTTTCTTCATGTTTCACAAGGTAGACATTCAATT-ATAGTCTGGTTTAATGAAAAA
* * ** *
3127 TGTAAAACAAA-TCACCTTAAAATTAATTATGAGATTATAAAATAATTTAAAACGAGTAATAAGG
65 TGTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA-G
* * *
3191 GGTTTTGAAAGAATGAGTGACTGTAAATGGACTTTTCTT-CTCAA
128 GCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAA
**** * * * * *
3235 TGAATGAC-TTTTTCTGT-ATGTTTTTTGATGTAGGCATTTAATTATAGACTGTTTTAATGAAAA
1 TGAATG-CTTTTTTCT-TCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAA
* * * * * *
3298 ATGTAAAAAAGTTTAACTTAAAATCAATTATGAGATTATCAAATCATTTAAAGCAAGTATTAAGG
64 ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * *
3363 CTTTTGAAGGAATGAGTGACTATAAATGGACTTTTCTTGCTAA
129 CTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * ** * * * *
3406 TGAATTCCTTTTTCTTCACATTTCTA-GAGGTAGACATTTAATTATTGTCTGGTTTAATAAAAAA
1 TGAATGCTTTTTTCTTCATGTTTC-ACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAA
* * * ************
3470 TGTAAAGAAATTAAACTTAAAATCAATTATGAGATTATAAAACTATTTAAAGCNNNNNNNNNNNN
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
************ *
3535 NNNNNNNNNNNNGGGTGACTATAAATGGAATTTTCTTGCCAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * *** * * **
3577 TGAATACTTTTTTCTTCACGTTTCTTGAGGTATATATTCAATTATTA-TCTGGTTTAACCAAAAA
1 TGAATGCTTTTTTCTTCATGTTTCACAAGGTAGACATTCAATTA-TAGTCTGGTTTAATGAAAAA
**********
3641 TGTAAAAAAATTCAACTTAAAATNNNNNNNNNNATTATAAAACCATTTAAAGCGAGTAATAAGGC
65 TGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * ** *
3706 TTTTGTAGGAATGCATGACTATAAATGGACTTTTCTTGCGAA
130 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * * * * * *
3748 TGAATG-TGCTTTTCTTAATGTTCCTCCATGTAGACATTCAATTATTGTCTGGTTTAACT-AAAA
1 TGAATGCT-TTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAA-TGAAAA
* ********** *
3811 ATGTAAAAAACATTCAACTTAAAATCAATTATGGGATNNNNNNNNNNTTTAAAGTGAGTAATAAG
64 ATGTAAAAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * *
3876 GCTTTT-AAAGGAATTGGTGACTTTAAATAGACTTTTATT-CTCAA
128 GCTTTTGAAA-GAATGGGTGACTATAAATGGACTTTTCTTGC-CAA
* * ** **
3920 TGAATGGC-TTTTTCTAT-ATGTTTCTCAAGGCAGGTATTCAATTATAGTCTATTTTAATGAAAA
1 TGAAT-GCTTTTTTCT-TCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAA
* ************* *
3983 ATGTAAAAAATTTCAACTTAAAATCNNNNNNNNNNNNNTAAAACCATTTAAAGCAAGTAATAAGG
64 ATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* * * *
4048 CTTTT-AAAGGAATGGGTGAATATAAATAGATTTTTCTTGTCAA
129 CTTTTGAAA-GAATGGGTGACTATAAATGGACTTTTCTTGCCAA
* * *** * * * **
4091 TGAATGCTTTTCTCTTCACGTTTCTTGAGGTATACATTCAATTATTGTCTAGTTTAACCAAAAAT
1 TGAATGCTTTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAAT
* * ** **
4156 GTAAAAACATTCACCTTAAAATCAATTATGAGATTATAAAATAATTTAAATAGAGTAATAAGGCT
66 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
*
4221 TTTG-AAGCAATGGGTGACTATAAATGGACTTTTCTT-CTTAA
131 TTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGC-CAA
* ** * * * ** *
4262 TGAATGAC-TTTTTCTAT-ACGCTTT-TTAAGGCA-AGCAATCAATTATAGCCTATTTTTATGAA
1 TGAATG-CTTTTTTCT-TCATG-TTTCACAAGGTAGA-CATTCAATTATAGTCTGGTTTAATGAA
** **********
4323 AAATGTAAAAATGTTCAACTTAAAATCAATTATGAGATTATNNNNNNNNNNAAAGCGAGTAATAA
62 AAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* ** * *
4388 GGCTTTTGAAGGAATAAGTGACTCTAAATGGA-TCTTTCTTGCTAA
127 GGCTTTTGAAAGAATGGGTGACTATAAATGGACT-TTTCTTGCCAA
* **** *
4433 TGAATTCCTCTTTTTC--CATGTTTTTGGAGGTAGACATTCAATTATTGTCTGGTTTAACT-AAA
1 TGAA-TGCT-TTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAA-TGAAA
*
4495 AATGTAAAAAAATTTAACTTAAAATCAATTATGAGATTATAAAA
63 AATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA
4539 NNNNNNNNNN
Statistics
Matches: 2637, Mismatches: 748, Indels: 270
0.72 0.20 0.07
Matches are distributed among these distances:
167 44 0.02
168 54 0.02
169 190 0.07
170 398 0.15
171 1615 0.61
172 312 0.12
173 23 0.01
174 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (171 bp):
TGAATGCTTTTTTCTTCATGTTTCACAAGGTAGACATTCAATTATAGTCTGGTTTAATGAAAAAT
GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
TTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAA
Found at i:3961 original size:172 final size:161
Alignment explanation
Indices: 3686--4007 Score: 303
Period size: 172 Copynumber: 1.9 Consensus size: 161
3676 TATAAAACCA
** * * *
3686 TTTAAAGCGAGTAATAAGGCTTTTGTAGGAATGCATGACTATAAATGGACTTTTCTTGCGAATGA
1 TTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGCATGACTATAAATAGACTTTTATTGCCAATGA
* * * * *
3751 ATGTGCTTTTCTTAATGTTCCTCCATGTAGACATTCAATTATTGTCTGGTTTAACT-AAAAATGT
66 ATGTGCTTTTCTTAATGTTCCTCAAGGCAGACATTCAATTATAGTCTAGTTTAA-TGAAAAATGT
3815 AAAAAACATTCAACTTAAAATCAATTATGGGAT
130 AAAAAA-ATTCAACTTAAAATCAATTATGGGAT
* * *
3848 NNNNNNNNNNTTTAAAGTGAGTAATAAGGCTTTTAAAGGAATTG-GTGACTTTAAATAGACTTTT
1 ----------TTTAAAGCGAGTAATAAGGCTTTTAAAGGAA-TGCATGACTATAAATAGACTTTT
* ** *
3912 ATT-CTCAATGAATG-GCTTTT-TCTATATGTTTCTCAAGGCAGGTATTCAATTATAGTCTATTT
55 ATTGC-CAATGAATGTGCTTTTCT-TA-ATGTTCCTCAAGGCAGACATTCAATTATAGTCTAGTT
*
3974 TAATGAAAAATGTAAAAAATTTCAACTTAAAATC
117 TAATGAAAAATGTAAAAAAATTCAACTTAAAATC
4008 NNNNNNNNNN
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
170 1 0.01
171 24 0.19
172 100 0.79
173 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.37
Consensus pattern (161 bp):
TTTAAAGCGAGTAATAAGGCTTTTAAAGGAATGCATGACTATAAATAGACTTTTATTGCCAATGA
ATGTGCTTTTCTTAATGTTCCTCAAGGCAGACATTCAATTATAGTCTAGTTTAATGAAAAATGTA
AAAAAATTCAACTTAAAATCAATTATGGGAT
Found at i:5305 original size:171 final size:169
Alignment explanation
Indices: 5128--5493 Score: 385
Period size: 169 Copynumber: 2.2 Consensus size: 169
5118 NNNNNNNNNN
* * * * * *
5128 AAAGCAAGTAGTAAGGCTTTTGAAGGAATGGGTGACTATAAATTGACTTTTCTTGCTAATGAATT
1 AAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTC--ACCAAAGAATG
* * *
5193 TCTTTTTCTAAACATTTCTAGGGGTAAACA-TGCAATTATTGTCTGGTTTAACAAAAAATGTGAA
64 CCTTTTTCTAAACATTTCTAGGGGTAAACAGT-CAATTATTGTCTAGTTTAACAAAAAATGTAAA
*
5257 AAAATTCAATTTAAAATAAATTATAAGATTATAAAACCACT-T
128 AAAATTCAATTAAAAATAAATTATAAGATTATAAAACCA-TAT
**********
5299 AAAGCAAGTAATAAGGCTTNNNNNNNNNNGGGTGACTATAAATGGACTTTTCACCAAAGAATGCC
1 AAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCACCAAAGAATGCC
** ** * * * * *
5364 TTTTTCTTCATGTTTCTTGGGGTATACAGTTAATTATTGTCTAGTTTAACCAAACATGTAAAAAA
66 TTTTTCTAAACATTTCTAGGGGTAAACAGTCAATTATTGTCTAGTTTAACAAAAAATGTAAAAAA
* *
5429 ATTCAATTAAAAATTAATTATGAGATTATAAAACCATAT
131 ATTCAATTAAAAATAAATTATAAGATTATAAAACCATAT
**
5468 AAAGCGTGTAATAAGGCTTTTGAAGG
1 AAAGCAAGTAATAAGGCTTTTGAAGG
5494 NNNNNNNNNN
Statistics
Matches: 153, Mismatches: 40, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
168 1 0.01
169 111 0.73
170 1 0.01
171 40 0.26
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.33
Consensus pattern (169 bp):
AAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTTTCACCAAAGAATGCC
TTTTTCTAAACATTTCTAGGGGTAAACAGTCAATTATTGTCTAGTTTAACAAAAAATGTAAAAAA
ATTCAATTAAAAATAAATTATAAGATTATAAAACCATAT
Found at i:6402 original size:171 final size:170
Alignment explanation
Indices: 5963--6600 Score: 436
Period size: 171 Copynumber: 3.7 Consensus size: 170
5953 GAATTATTAT
* * * * ** *
5963 CTGGTTTAAC-TAACATGTAAAAGA-AATCAACTTAAAATCAATTATAATTTTATCAAA-CCATT
1 CTGGTTTAACAAAAAATGTAAAA-ATATTCAACTTAAAATCAATTATGAGATTAT-AAATCCATC
* * * ** * * * *
6025 TAAAGTGAATAATAAGGCTTTTGAAGGAATTAGTGACTTTAAATGAACTTTTCTTCTCAATGAAT
64 TAAAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTTGTCAATGAAG
* * * * *
6090 GGC-TTTCT-CTATACTTTTCTCAAGG-CAGGCACTCAATTATAGT
129 GGCTTTTCTGC-AT-GTTTT-T-AGGGACAGACATTCAATTATAGC
* * * * * * * * *
6133 CT-ATTGTAATAAAAAATCTAAAAAAATTGAACTTAAAATCAATTGTGAGATTATAAAACTATTT
1 CTGGTT-TAACAAAAAATGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAAATCCATCT
* **********
6197 AAATCGAGTAATAAGGCTNNNNNNNNNNTGGGTGACTATAAATGGACTTTTCTTGTCAATGAAGG
65 AAAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTTGTCAATGAAGG
* * * * * *
6262 GTTTTTTTTTCATGTTTCTT-GAGG-TAGACATTCATTTATTA-T
130 G-CTTTTCTGCATGTTT-TTAG-GGACAGACATTCAATTA-TAGC
* * * **********
6304 TTGGTTTAACCAAAAATGTAAACAA-ATTCAGCTTAAAATCAATTATGAGATTATNNNNNNNNNN
1 CTGGTTTAACAAAAAATGTAAA-AATATTCAACTTAAAATCAATTATGAGATTATAAATCCATCT
* * *
6368 AAAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTACAAATGGACTTTT-TTCCTCAATGAAT
65 AAAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTT-GTCAATGAAG
*
6432 GGCTTTTCTGCATGTTTTTAGGGACAGGCATTCAATTATAGC
129 GGCTTTTCTGCATGTTTTTAGGGACAGACATTCAATTATAGC
* * *
6474 CTGTTTTAATAAAAAATGTAAAAATGTTCAACTTAAAATCAATTATGAGATTATAAATCCATCTA
1 CTGGTTTAACAAAAAATGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAAATCCATCTA
* * * *
6539 AAGCGAGTAATAAGGCTTTTGAAGGAATGCGTGACTATAAATAGAGTTTTCTTGTCAATGAA
66 AAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTTGTCAATGAA
6601 TGCCTTTTTC
Statistics
Matches: 350, Mismatches: 100, Indels: 36
0.72 0.21 0.07
Matches are distributed among these distances:
169 10 0.03
170 134 0.38
171 188 0.54
172 10 0.03
173 7 0.02
174 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.34
Consensus pattern (170 bp):
CTGGTTTAACAAAAAATGTAAAAATATTCAACTTAAAATCAATTATGAGATTATAAATCCATCTA
AAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTTGTCAATGAAGGG
CTTTTCTGCATGTTTTTAGGGACAGACATTCAATTATAGC
Found at i:6544 original size:170 final size:166
Alignment explanation
Indices: 5873--6608 Score: 511
Period size: 170 Copynumber: 4.3 Consensus size: 166
5863 NNNNNNNNNN
* * *
5873 TTTTGAAGGAATAGGTGACTATAAATAGACTTTTCTTGC-CAATGAATGTG-TTTTCCTTCACGT
1 TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT-CTCAATGAATG-GCTTTT-C-TCATGT
* * ** * * * *
5936 TTCACTA-GGTAGATATTGAATTATTA-TCTGGTTTAACT--AACATGTAAAAGAAATCAACTTA
62 TT--TTAGGGCAGGCATTCAATTA-TAGTCTGTTTTAA-TAAAAAATGTAAAA-AATTCAACTTA
* ** * *
5997 AAATCAATTATAATTTTATCAAACCATTTAAAGTGAATAATAAGGC
122 AAATCAATTATGAGATTAT-AAACCATTTAAAGCGAGTAATAAGGC
** * * *
6043 TTTTGAAGGAATTAGTGACTTTAAATGAACTTTTCTTCTCAATGAATGGC-TTTCTCTATACTTT
1 TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTCTC-AT-GTTT
* * * * * *
6107 TCTCAAGGCAGGCACTCAATTATAGTCTATTGTAATAAAAAATCTAAAAAAATTGAACTTAAAAT
64 T-T-AGGGCAGGCATTCAATTATAGTCTGTTTTAATAAAAAATGT-AAAAAATTCAACTTAAAAT
* * *
6172 CAATTGTGAGATTATAAAACTATTTAAATCGAGTAATAAGGC
126 CAATTATGAGATTAT-AAACCATTTAAAGCGAGTAATAAGGC
********** * * * *
6214 TNNNNNNNNNNTGGGTGACTATAAATGGACTTTTCTTGTCAATGAAGGGTTTTTTTTTCATGTTT
1 TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGG--CTTTTCTCATGTTT
* * * * * ** *
6279 CTT-GAGGTAGACATTCATTTATTA-TTTGGTTTAACCAAAAATGTAAACAAATTCAGCTTAAAA
64 -TTAG-GGCAGGCATTCAATTA-TAGTCTGTTTTAATAAAAAATGTAAA-AAATTCAACTTAAAA
*********
6342 TCAATTATGAGATTATNNNNNNNNNNAAAGCGAGTAATAAGGC
125 TCAATTATGAGATTAT-AAACCATTTAAAGCGAGTAATAAGGC
* *
6385 TTTTCAAGGAATGGGTGACTACAAATGGACTTTT-TTCCTCAATGAATGGCTTTTCTGCATGTTT
1 TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTT-CTCAATGAATGGCTTTTCT-CATGTTT
* *
6449 TTAGGGACAGGCATTCAATTATAGCCTGTTTTAATAAAAAATGTAAAAATGTTCAACTTAAAATC
64 TTAGGG-CAGGCATTCAATTATAGTCTGTTTTAATAAAAAATGTAAAAA-ATTCAACTTAAAATC
*
6514 AATTATGAGATTATAAATCCATCTAAAGCGAGTAATAAGGC
127 AATTATGAGATTATAAA-CCATTTAAAGCGAGTAATAAGGC
* * * * *
6555 TTTTGAAGGAATGCGTGACTATAAATAGAGTTTTCTTGTCAATGAATGCCTTTT
1 TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTT
6609 TCTTCACGTT
Statistics
Matches: 425, Mismatches: 115, Indels: 52
0.72 0.19 0.09
Matches are distributed among these distances:
167 2 0.00
168 3 0.01
169 25 0.06
170 189 0.44
171 188 0.44
172 10 0.02
173 3 0.01
174 5 0.01
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.35
Consensus pattern (166 bp):
TTTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAATGGCTTTTCTCATGTTTTT
AGGGCAGGCATTCAATTATAGTCTGTTTTAATAAAAAATGTAAAAAATTCAACTTAAAATCAATT
ATGAGATTATAAACCATTTAAAGCGAGTAATAAGGC
Found at i:6622 original size:341 final size:339
Alignment explanation
Indices: 5873--6622 Score: 765
Period size: 341 Copynumber: 2.2 Consensus size: 339
5863 NNNNNNNNNN
* ** *
5873 TTTTGAAGGAATAGGTGACTATAAATAGACTTTTCTTGCCAATGAATGTGTTTTCCTTCACGTTT
1 TTTTGAAGGAAT-GGTGACTATAAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTT
* * * * *
5938 CACTAGGTAGATATTGAATTATTATCTGGTTTAACTAACATGTAAAAGAAATCAACTTAAAATCA
65 C-TTAGGTAGACATTCAATTATTATCTGGTTTAACAAAAATGTAAAAGAAATCAACTTAAAATCA
** * * * **
6003 ATTATAATTTTATCAAACCATTTAAAGTGAATAATAAGGCTTTTGAAGGAATTAGTGACTTTAAA
129 ATTATAAGATTATCAAACCATTTAAAGCGAATAATAAGGCTTTTCAAGGAATGAGTGACTACAAA
*
6068 TGAACTTTTCTTCTCAATGAATGGCTTTCTCTATACTTTTCTCAAGGCAGGCACTCAATTATAGT
194 TGAACTTTTCTTCTCAATGAATGGCTTTCTCTATACTTTTCTCAAGGCAGGCACTCAATTATAGC
* * * *
6133 CTATTGTAATAAAAAATCTAAAAAAATTGAACTTAAAATCAATTGTGAGATTATAAAACTATTTA
259 CTATTGTAATAAAAAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATCTA
*
6198 AATCGAGTAATAAGGC
324 AAGCGAGTAATAAGGC
********** * * ** * *
6214 TNNNNNNNNNNTGGGTGACTATAAATGGACTTTTCTTGTCAATGAAGGGTTTTTTTTTCATGTTT
1 TTTTGAAGGAAT-GGTGACTATAAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTT
* * * *
6279 CTTGAGGTAGACATTCATTTATTATTTGGTTTAACCAAAAATGTAAACA-AATTCAGCTTAAAAT
65 CTT-AGGTAGACATTCAATTATTATCTGGTTTAA-CAAAAATGTAAA-AGAAATCAACTTAAAAT
* ********** * *
6343 CAATTATGAGATTATNNNNNNNNNNAAAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTACA
127 CAATTATAAGATTATCAAACCATTTAAAGCGAATAATAAGGCTTTTCAAGGAATGAGTGACTACA
* * * *
6408 AATGGACTTTT-TTCCTCAATGAATGGCTTT-TCTGCAT-GTTTT-T-AGGGACAGGCATTCAAT
192 AATGAACTTTTCTT-CTCAATGAATGGCTTTCTCT--ATACTTTTCTCAAGG-CAGGCACTCAAT
* * * ** *
6468 TATAGCCTGTTTTAATAAAAAATGTAAAAATGTTCAACTTAAAATCAATTATGAGATTATAAATC
253 TATAGCCTATTGTAATAAAAAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
6533 CATCTAAAGCGAGTAATAAGGC
318 CATCTAAAGCGAGTAATAAGGC
*
6555 TTTTGAAGGAATGCGTGACTATAAATAGAGTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTT
1 TTTTGAAGGAATG-GTGACTATAAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTT
6620 CTT
65 CTT
6623 NNNNNNNNNN
Statistics
Matches: 320, Mismatches: 81, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
340 5 0.02
341 214 0.67
342 98 0.31
343 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.36
Consensus pattern (339 bp):
TTTTGAAGGAATGGTGACTATAAATAGACTTTTCTTGTCAATGAATGCCTTTTTCTTCACGTTTC
TTAGGTAGACATTCAATTATTATCTGGTTTAACAAAAATGTAAAAGAAATCAACTTAAAATCAAT
TATAAGATTATCAAACCATTTAAAGCGAATAATAAGGCTTTTCAAGGAATGAGTGACTACAAATG
AACTTTTCTTCTCAATGAATGGCTTTCTCTATACTTTTCTCAAGGCAGGCACTCAATTATAGCCT
ATTGTAATAAAAAATCTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATCTAAA
GCGAGTAATAAGGC
Found at i:8102 original size:172 final size:171
Alignment explanation
Indices: 7832--8245 Score: 443
Period size: 172 Copynumber: 2.4 Consensus size: 171
7822 NNNNNNNNNN
* * * *
7832 TTATAGTCTGTTTTAGCCAAAAATG-AAAAAAAATTAACTTAAAATTAGTTATGAGACTATAAAA
1 TTATAGTCTGTTTTATCCAAAAATGTAAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAA
** * * * *
7896 -CAATTTCGAGCAAGTAATAAGACTTTTAAAGGAATGAGTGACTCTAAATAGACTTTT-TTGAC-
66 TC-ATTTAAAACAAGTAATAAGACTGTCAAAGGAATAAGTGACTCTAAATAGACTTTTCTT--CT
* *
7958 CAATAAATGCCTTTTCCTT-CACGTTTCTT-GAGGTAGACATTCAA
128 CAATAAATGACTTTT-CTTACACGTTT-TTAGAGGTAGACAGTCAA
* * * *
8002 TTATTGTCTGGTTTATCCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGGGATTCTAAA
1 TTATAGTCTGTTTTATCCAAAAATGTAAAAAAAATT-AACTTAAAATCAATTATGAGATTATAAA
* * * * *
8067 ATCATTTAAAACGAGTAATAAGGCTGTCCAAGGAATAAGTGACTTTAAATGGACTTTTCTTCTCA
65 ATCATTTAAAACAAGTAATAAGACTGTCAAAGGAATAAGTGACTCTAAATAGACTTTTCTTCTCA
* **
8132 ATAAATGACTTTTTTTACACGTTTTTAGAGGTAGGTAGTCAA
130 ATAAATGACTTTTCTTACACGTTTTTAGAGGTAGACAGTCAA
* * *
8174 TTATAGTCTATTTTAAT-GAAAAATGT--AAAACATTGAACTT-AAATCAATTATGAGATTATAA
1 TTATAGTCTGTTTT-ATCCAAAAATGTAAAAAAAATT-AACTTAAAATCAATTATGAGATTATAA
8235 AATCATTTAAA
64 AATCATTTAAA
8246 GCCACTAATA
Statistics
Matches: 204, Mismatches: 32, Indels: 17
0.81 0.13 0.07
Matches are distributed among these distances:
169 30 0.15
170 34 0.17
171 15 0.07
172 120 0.59
173 5 0.02
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (171 bp):
TTATAGTCTGTTTTATCCAAAAATGTAAAAAAAATTAACTTAAAATCAATTATGAGATTATAAAA
TCATTTAAAACAAGTAATAAGACTGTCAAAGGAATAAGTGACTCTAAATAGACTTTTCTTCTCAA
TAAATGACTTTTCTTACACGTTTTTAGAGGTAGACAGTCAA
Found at i:8749 original size:171 final size:170
Alignment explanation
Indices: 7562--8749 Score: 664
Period size: 171 Copynumber: 7.0 Consensus size: 170
7552 NNNNNNNNNN
* * * * *
7562 AAGCGAGTAATAAGGCTTTTCAAGGAATGGGTGACTATAAATGGACTTTTCTTCGCAATGAATGG
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
* * * * * *
7627 CTTTTTCTACAAGTTTTCTA-AGGAAGGCATTCAATTA-TATCTTGTTTTAATGAAAAATGTAAA
66 TTTTTTCTACACG-TTTCTAGAGGTAGACATTCAATTATTGTC-TGTTTT-ATAAAAAATGTAAA
* * * * *
7690 ACAGTTCAGCTTAAAATCAATTATAAGATTATAAAACCATTTA
128 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTA
********** * * ** * **
7733 AAGCGNNNNNNNNNNCTTTTGAAGGAATGGGTGACTATAAATACACTTTTCTTGTCAATAAATTC
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
* ** * ********** * ** *
7798 CTTTTTCTTTATGTTTCTCA-AGGTNNNNNNNNNNTTATAGTCTGTTTTAGCCAAAAATGAAAAA
66 TTTTTTCTACACGTTTCT-AGAGGTAGACATTCAATTATTGTCTGTTTTA-TAAAAAATGTAAAA
* * * *
7862 AAATT-AACTTAAAATTAGTTATGAGACTATAAAACAATTTC
129 AAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTA
* * * * * *
7903 GAGCAAGTAATAAGACTTTTAAAGGAA-TGAGTGACTCTAAATAGACTTTT-TTGAC-CAATAAA
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGA-TGACTATAAATGGACTTTTCTT--CTCAATAAA
** * * * * *
7965 TGCCTTTTCCTTCACGTTTCTTGAGGTAGACATTCAATTATTGTCTGGTTTATCCAAAAATGTAA
63 TGGTTTTTTCTACACGTTTCTAGAGGTAGACATTCAATTATTGTCTGTTTTAT-AAAAAATGT-A
* *
8030 AAAAAATTCAACTTAAAATCAATTATGGGATTCTAAAATC-ATTTA
126 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CAATTTA
* * ** * *
8075 AAACGAGTAATAAGGCTGTCCAAGGAA-TAAGTGACTTTAAATGGACTTTTCTTCTCAATAAATG
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGA-TGACTATAAATGGACTTTTCTTCTCAATAAATG
* * ** * * * *
8139 ACTTTTTT-TACACGTTTTTAGAGGTAGGTAGTCAATTATAGTCTATTTTAATGAAAAATGT-AA
65 -GTTTTTTCTACACGTTTCTAGAGGTAGACATTCAATTATTGTCTGTTTT-ATAAAAAATGTAAA
* *
8202 AACATTGAACTT-AAATCAATTATGAGATTATAAAATC-ATTTA
128 AAAATTCAACTTAAAATCAATTATGAGATTATAAAA-CAATTTA
* * * * * ********** * **
8244 AAGCCACTAATAAAGCTTTTGAAGGAATGGGTGNNNNNNNNNNGACTTTTCTTGTCAATAAATAC
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
* * * * *** *
8309 TTTTCTCTTCACGTTTCTTA-AGGTACACATTTAATTACAATCTGTTTTA-ACTGAAAATGTAAA
66 TTTTTTCTACACGTTTC-TAGAGGTAGACATTCAATTATTGTCTGTTTTATA--AAAAATGTAAA
**********
8372 AAAATTCAACTTAANNNNNNNNNNGAGATTATAAAACAATTTA
128 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTA
* * * * * *
8415 AAGTGAGTACTAAGGCTTTTGAAAGAATGGGTGACTATAAAAGGACTTTTCTTCTCAATAAATGG
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
* *** ** * * *
8480 CTTTTTCTACACGTTCTCCCTAGCAAG-CATTCAATTA-TATCATGTTTTAATGAAAAATGTGAA
66 TTTTTTCTACACGTT-TCTAGAGGTAGACATTCAATTATTGTC-TGTTTT-ATAAAAAATGTAAA
* **********
8543 AAAGTTCAACTTAAAATCANNNNNNNNNNTATAAAACAATTTA
128 AAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTA
* * * *
8586 ACGTGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATGATTGG
1 AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
* * *
8651 TTTTTTCCACACATTTCTAGAGGTAGACATTCAATTATTGTCTGATTTTATAAAAAATATAAAAA
66 TTTTTTCTACACGTTTCTAGAGGTAGACATTCAATTATTGTCTG-TTTTATAAAAAATGTAAAAA
8716 AATTCAACTTAAAATCAATTATGAGATTATAAAA
130 AATTCAACTTAAAATCAATTATGAGATTATAAAA
8750 NNNNNNNNNN
Statistics
Matches: 750, Mismatches: 236, Indels: 62
0.72 0.23 0.06
Matches are distributed among these distances:
168 7 0.01
169 107 0.14
170 151 0.20
171 343 0.46
172 132 0.18
173 10 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.34
Consensus pattern (170 bp):
AAGCGAGTAATAAGGCTTTTGAAGGAATTGATGACTATAAATGGACTTTTCTTCTCAATAAATGG
TTTTTTCTACACGTTTCTAGAGGTAGACATTCAATTATTGTCTGTTTTATAAAAAATGTAAAAAA
ATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTA
Found at i:9565 original size:170 final size:160
Alignment explanation
Indices: 9186--9689 Score: 452
Period size: 171 Copynumber: 3.0 Consensus size: 160
9176 NNNNNNNNNN
*
9186 TTAAAGCGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACTTTTCCTCTCAATGAA
1 TTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCCTCTCAATGAA
* * * * * * *
9251 TAACTTTTTCTACATATTTTTTATGGTAGGCATTCAATTATTGCCTGTTTTCATGAATAATGTAA
66 TGACTTTTTCTACATGTTTTTTAAGGTAGACATTCAATTAAT-CCTGTTTTAATGAAAAATGTAA
*
9316 AAAAGTTCAACTTAAAATCAATTATGAGATTNNNNNNNNNN
130 AAAA-TTCAACTTAAAATCAATTATGAGATT---------A
* * * * * * *
9357 TTAGAGCGAGTAATAACGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTTCTTATCAATAAA
1 TTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCCTCTCAATGAA
* * ** * * **
9422 TGTCTTTTTCTTCATGTTTCCTAAAGTAGACATTCAATTACATCCTATTTTAACCAAAAATGTAA
66 TGACTTTTTCTACATGTTTTTTAAGGTAGACATTCAATTA-ATCCTGTTTTAATGAAAAATGTAA
*
9487 AAAATTTAACTTAAAATCAATTATGAGATTA
130 AAAATTCAACTTAAAATCAATTATGAGATTA
* * *
9518 NNNNNNNNNNTAAAGTGGGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCCT
1 ---------TTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCCT
* * * * * * * *
9583 CTTAATGAATGGCTTTCTCTACATGTTTTTTGAGGCA-AGCATTGAATTATAGCCCGTTTTAATG
57 CTCAATGAATGACTTTTTCTACATGTTTTTTAAGGTAGA-CATTCAATTA-ATCCTGTTTTAATG
*
9647 AAAAATATAAAATAATTCAACTTAAAATCAATTATGAGATTA
120 AAAAATGTAAAA-AATTCAACTTAAAATCAATTATGAGATTA
9689 T
1 T
9690 AANNNNNNNN
Statistics
Matches: 267, Mismatches: 54, Indels: 33
0.75 0.15 0.09
Matches are distributed among these distances:
169 1 0.00
170 128 0.48
171 137 0.51
172 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.35
Consensus pattern (160 bp):
TTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAATAGACTTTTCCTCTCAATGAA
TGACTTTTTCTACATGTTTTTTAAGGTAGACATTCAATTAATCCTGTTTTAATGAAAAATGTAAA
AAATTCAACTTAAAATCAATTATGAGATTA
Done.