Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399912.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3145.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3914
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.26

Warning! 1062 characters in sequence are not A, C, G, or T


Found at i:1157 original size:171 final size:171

Alignment explanation


    Indices: 790--1158  Score: 390
    Period size: 171  Copynumber: 2.2  Consensus size: 171

        780 NNNNNNNNNN

                                                                             
        790 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAACAAGCTTTTTCTATATGTTTC
          1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAACAAGCTTTTTCTATATGTTTC

                 *  ***                       *      **        *        *    
        855 CTGAGTTAGGCTTTCAATTATAGTCTATTTTAAAGAAAAATGTAAAAAATTTAACTTAAATTCAA
         66 CTGAGGTAAAATTTCAATTATAGTCTATTTTAAAAAAAAATAAAAAAAATTCAACTTAAAATCAA

                                                     
        920 TTATAAGAATACAAAACCATTTAAAGCAGGTAATAAAGCTT
        131 TTATAAGAATACAAAACCATTTAAAGCAGGTAATAAAGCTT

                 **   **                    *            **       * *        
        961 TTGAATTAATAAGTGACTATAAATGGACTTTTTTTCTCAATGAA-TGGCTTTTTTTGTACT-TTT
          1 TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAACAAGCTTTTTCTATA-TGTTT

            **                          *                                    
       1024 TTTGAGGTACAAATTT-AATTATAGTCTGTTTTAACAAAAAAATAAAAAAAAATTCAACTTAAAA
         65 CCTGAGGTA-AAATTTCAATTATAGTCTATTTTAA-AAAAAAAT-AAAAAAAATTCAACTTAAAA

                    *   *  *     *         *               
       1088 TCAA-TATGAGATTATAAAACTATTTAAAG-GGAGTAAT-AAGCCTT
        127 TCAATTATAAGAATACAAAACCATTTAAAGCAG-GTAATAAAG-CTT

                          *   *        
       1132 TTGAAGGAATGGGTAACTCTAAATGGA
          1 TTGAAGGAATGGGTGACTATAAATGGA

       1159 NNNNNNNNNN


Statistics
Matches: 160,  Mismatches: 32, Indels: 12
        0.78            0.16        0.06

Matches are distributed among these distances:
 170   40  0.25
 171  100  0.62
 172   20  0.12

ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36


Consensus pattern (171 bp):   
TTGAAGGAATGGGTGACTATAAATGGACTTTTCTTCTCAATGAACAAGCTTTTTCTATATGTTTC
CTGAGGTAAAATTTCAATTATAGTCTATTTTAAAAAAAAATAAAAAAAATTCAACTTAAAATCAA
TTATAAGAATACAAAACCATTTAAAGCAGGTAATAAAGCTT
Done.