Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399925.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3156.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5901
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.24
Warning! 1997 characters in sequence are not A, C, G, or T
Found at i:2863 original size:172 final size:171
Alignment explanation
Indices: 2513--2906 Score: 490
Period size: 172 Copynumber: 2.3 Consensus size: 171
2503 AAAGCAAAAA
* * * * * *
2513 AATTCAACTTAAAATCAATTAT-AGCATTACAAAACCATTTAAAGCAAATAATAAAGCTTTTGAA
1 AATTCAAATTTAAATCAATTTTAAG-ATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAA
* * * *
2577 AGTATGGGTGACTATAAATAGAGTTTTCTTGCCAATAAATTTTTTTTCTTCATGTTTCTCAAGGT
65 AGTATGGGTGACTATAAATAGACTTTTCTTACCAATAAATCTCTTTTCTTCATGTTTCTCAAGGT
2642 AGACATTCAATTCTAGTATGTTTTTAAAAACAATGCACAAAG
130 AGACATTCAATTCTAGTATGTTTTTAAAAACAATGCACAAAG
* * * *
2684 AATTCAAATTTAAGTCAATTTTAAGATTATAAGACCATTTAAAGCGAGTAATAAGGCTTTTGAAG
1 AATTCAAATTTAAATCAATTTTAAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAA
* * * *
2749 GTGTGGGTGACTATAAATGGACTTTTCTTACCAATGAATACTCTTTTCTTCATGTTTCTCAATGT
66 GTATGGGTGACTATAAATAGACTTTTCTTACCAATAAAT-CTCTTTTCTTCATGTTTCTCAAGGT
* * *
2814 AGATATTCAATTCTAGTCTG-TTTTAACCAAA-AATGTATC-AAG
130 AGACATTCAATTCTAGTATGTTTTTAA--AAACAATGCA-CAAAG
* * * *
2856 AATTCAAATTTAAATCAGTTTTGAGATTATAAAATCATTTAAAGTGAGTAA
1 AATTCAAATTTAAATCAATTTTAAGATTATAAAACCATTTAAAGCGAGTAA
2907 NNNNNNNNNN
Statistics
Matches: 191, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
171 92 0.48
172 95 0.50
173 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (171 bp):
AATTCAAATTTAAATCAATTTTAAGATTATAAAACCATTTAAAGCGAGTAATAAAGCTTTTGAAA
GTATGGGTGACTATAAATAGACTTTTCTTACCAATAAATCTCTTTTCTTCATGTTTCTCAAGGTA
GACATTCAATTCTAGTATGTTTTTAAAAACAATGCACAAAG
Found at i:3678 original size:172 final size:172
Alignment explanation
Indices: 3361--4161 Score: 844
Period size: 172 Copynumber: 4.7 Consensus size: 172
3351 NNNNNNNNNN
* * * * * *
3361 AATAAGGCTTTTGAAGCAATGGGTGACTATAAATGGACTTCTCTTGCCAATGAA-ACTTCTCTTC
1 AATAAGGCTTCTAAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTT-TTTTC
* * ** * * * * * * * * * *
3425 TTTATATTTCTCGGGGTAGACGTTCAATTATAATATGTTTTAGCCAGAAAA-GCAAAAACATTTG
65 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCA-AAAATGTACAAAGAATTC
** * *
3489 AGCTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGATT
129 AAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGT
* * * * * *
3533 AATAAGGCTTCTAAAGCATTGGGTGACTATAAATAAACTTTT-TGTGCCAATAAATACATATTTC
1 AATAAGGCTTCTAAAGGAATGGGTGACTATAAATAGACTTTTCT-TGCCAATGAATACTTTTTTC
* * * * * * *
3597 TTCATATTTCTCATGGTATAGACTC-ATTCCTAGTCTATTTTCACCAAAAATGT-CTAAA-ACAT
65 TTCATGTTTCTCAAGGTAGACATTCAATT-CTAGTCTGTTTTAACCAAAAATGTAC-AAAGA-AT
* * * *
3659 TCAAATTTAAATTAATTTTGAGATTAGAAAATCATTTAAACTGAGT
127 TCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGT
* ** *
3705 AATAAGGC-TCTTAGAGGAATGACTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTC
1 AATAAGGCTTC-TAAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTC
*
3769 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTGCAAAGAATTCA
65 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAGAATTCA
* *
3834 AATTTAAATCAATTTTGAGATTATAAAACCATTTAAATTGCGT
130 AATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGT
* * * * *
3877 AATAAGGCTTTTGAAGGTATTGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCTTTTTTCT
1 AATAAGGCTTCTAAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCT
* *
3942 TCATGTTTCTCAAGGTAGACATTCAATT-TCAGTCTGTTTTAACAAAAAATGTACAAAGAATTGA
66 TCATGTTTCTCAAGGTAGACATTCAATTCT-AGTCTGTTTTAACCAAAAATGTACAAAGAATTCA
* * * * * * **
4006 AATTTAATTTAAATTTGACATTATCAACCCATTTAAAGCAAGT
130 AATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGT
* * * * * *
4049 AATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTCTCTTGTCAATGAATACTCTTTTCT
1 AATAAGGCTTCTAAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCT
*
4114 TCATGTTTCTCAAGGTAGATATTCAATTCTAGTCTGTTTTAACCAAAA
66 TCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAA
4162 NNNNNNNNNN
Statistics
Matches: 527, Mismatches: 88, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
171 12 0.02
172 504 0.96
173 11 0.02
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (172 bp):
AATAAGGCTTCTAAAGGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTTCT
TCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTACAAAGAATTCAA
ATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGT
Found at i:3992 original size:344 final size:343
Alignment explanation
Indices: 3361--4161 Score: 929
Period size: 344 Copynumber: 2.3 Consensus size: 343
3351 NNNNNNNNNN
* * ** *
3361 AATAAGGCTTTTGAAGCAATGGGTGACTATAAATGGACTTCTCTTGCCAATGAA-ACTTCTCTTC
1 AATAAGGCTTTAGAAGGAATGACTGACTATAAATGGACTTCTCTTGCCAATGAATACTT-TTTTC
* * ** * * * * * *
3425 TTTATATTTCTCGGGGTAGACGTTCAATTATAATATGTTTTAGCCAGAAAAGCAAAAACATTTGA
65 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCA-AAAAGCAAAAACATTTCA
** *
3490 GCTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGATTAATAAGGCTTCTAAAGCATTGG
129 AATTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGCATTGG
* * *
3555 GTGACTATAAATAAACTTTTTGTGCCAATAAATACATATTTCTTCATATTTCTCATGGTATAGAC
194 GTGACTATAAATAAACTTTTTGTGCCAATAAATACATATTTCTTCATATTTCTCAAGGTAGACAC
* * * *
3620 TCATTCCTAGTCTATTTTCACCAAAAATGT-CTAAA-ACATTCAAATTTAAATTAATTTTGAGAT
259 TCATTCCTAGTCTATTTTAACAAAAAATGTAC-AAAGA-ATTCAAATTTAAATTAAATTTGACAT
* *
3683 TAGAAAATCATTTAAA-CTGAGT
322 TAGAAAACCATTTAAAGC-AAGT
*
3705 AATAAGGCTCTTAG-AGGAATGACTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTC
1 AATAAGGCT-TTAGAAGGAATGACTGACTATAAATGGACTTCTCTTGCCAATGAATACTTTTTTC
*
3769 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAATGTGCAAAGA-A-TT
65 TTCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAA---GCAAAAACATTT
* * * * * *
3832 CAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAATTGCGTAATAAGGCTTTTGAAGGTAT
127 CAAATTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCT-AAAGCAT
* * * * * *
3897 T-GGTGACTATAAATAGACTTTTCT-TGCCAATGAATGCTTTTTTCTTCATGTTTCTCAAGGTAG
191 TGGGTGACTATAAATAAACTTTT-TGTGCCAATAAATACATATTTCTTCATATTTCTCAAGGTAG
* * * * *
3960 ACATTCAATTTC-AGTCTGTTTTAACAAAAAATGTACAAAGAATTGAAATTTAATTTAAATTTGA
255 ACACTC-ATTCCTAGTCTATTTTAACAAAAAATGTACAAAGAATTCAAATTTAAATTAAATTTGA
** *
4024 CATTATCAACCCATTTAAAGCAAGT
319 CATTAGAAAACCATTTAAAGCAAGT
* ** * *
4049 AATAAGGCTTTTGAAGGAATGGGTGACTATAAATGGACTTCTCTTGTCAATGAATACTCTTTTCT
1 AATAAGGCTTTAGAAGGAATGACTGACTATAAATGGACTTCTCTTGCCAATGAATACTTTTTTCT
*
4114 TCATGTTTCTCAAGGTAGATATTCAATTCTAGTCTGTTTTAACCAAAA
66 TCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAA
4162 NNNNNNNNNN
Statistics
Matches: 389, Mismatches: 56, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
343 7 0.02
344 354 0.91
345 22 0.06
346 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (343 bp):
AATAAGGCTTTAGAAGGAATGACTGACTATAAATGGACTTCTCTTGCCAATGAATACTTTTTTCT
TCATGTTTCTCAAGGTAGACATTCAATTCTAGTCTGTTTTAACCAAAAAGCAAAAACATTTCAAA
TTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTCTAAAGCATTGGGT
GACTATAAATAAACTTTTTGTGCCAATAAATACATATTTCTTCATATTTCTCAAGGTAGACACTC
ATTCCTAGTCTATTTTAACAAAAAATGTACAAAGAATTCAAATTTAAATTAAATTTGACATTAGA
AAACCATTTAAAGCAAGT
Found at i:5256 original size:172 final size:168
Alignment explanation
Indices: 4701--5901 Score: 1137
Period size: 172 Copynumber: 7.0 Consensus size: 168
4691 NNNNNNNNNN
* * *
4701 TAAATTGAGTAATAAGGCTCTTGAAGGAATGGGTGACTATAAATGGACTTTTCTAGCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * *
4766 ACTTTTCTATTCATGTTTCTCATGGTATA-ATTCAATTCTAGTCTATTTTAACTAAAAATGTACA
65 ACTTTT-TCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAAC-AAAAATGTA-A
* *
4830 AAACATTCAAATTTAAATCAATTTTGAGATTATAAAACCATT
127 AAAAATTTAAATTTAAATCAATTTTGAGATTATAAAACCATT
* * * * * *
4872 TAAAGTGCGTAATAAGGCTCTTGAAGGAGTGGGTGACTATAAATGAACTTCTCTTCCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * ** * * ** * *
4937 GCCTTTTTCTTTACATTTCTCAAGGTAGGCATTCAATTAGAGTTTG-TTTAACTAAAAAT-TTAA
65 -ACTTTTTCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAAC-AAAAATGTAAA
* ** * * ** *
5000 AAAATTCAGCTTAAAATCAATTATG-GCATTACGAAACTATT
128 AAAATTTAAATTTAAATCAATTTTGAG-ATTATAAAACCATT
* * * * * *
5041 TAAAGCGAGTACTAAGGATTTTGAAGGTATGGGTGAATATAAATAGACTTTTCTTGCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTGCCAATGAAT
* ** *
5106 GCTTTTATCTTCATGTTTCTCAAAGTAGACATTTAATTCTAGTATGTTTTAACAAAAACTGTATA
65 ACTTTT-TCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAACAAAAA-TGTA-A
*
5171 AAAAATTTAAATTTAAATCAATTTTTAGATTATAAAACCATT
127 AAAAATTTAAATTTAAATCAATTTTGAGATTATAAAACCATT
* * * * *
5213 TGAAGTAAGTAATAAGGTTTTTGAAGGAATAGGTTACTATAAATGGACTTCTCTTGCC-ATGGAA
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAAT-GGTGACTATAAATGGACTTTTCTTGCCAAT-GAA
* * * * *
5277 -ACTTCTCTTCTTCATGTTTCTCAGGGTAGACAGTT-AATTATAATATGTTTGAA-ATAGAAAAG
64 TACTT-T-TTCTTCATGTTTCTCATGGTAGACA-TTCAATTCTAGTATGTTTTAACA-A-AAATG
* * * * * *
5339 CAAAACATTTTGAACTTAAAATCAATTTTGAGATTATAAAACTATT
124 TAAAAAAATTT-AAATTTAAATCAATTTTGAGATTATAAAACCATT
* * * * * *
5385 TAAAGTGATTAATAAGGCTTTTGAAGCAATGAGTGAGTATAAATTGTCTTTTTTTGCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAATG-GTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * *
5450 ACTTTTTTCTTTATGTTTCTCATGGTATAGATTCAATTCTAGTCTATTTTAACCAAAAATGTATA
65 AC-TTTTTCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAA-CAAAAATGTA-A
*
5515 AAACA-TTAGAATTTAAATCAATTTTGAGATTATAAAACCATT
127 AAAAATTTA-AATTTAAATCAATTTTGAGATTATAAAACCATT
* * *
5557 TAAACTGAGTTATAAGGCTCTTGAAGGAATGGATGACTATAAATGGACTTTTCTTGCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAATGG-TGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * *** * *
5622 ACTTTTTTATTCATGTTTCTCGTGGCATTGATTCAATTCTAGTCTATTTTAACCAAAAATGTAAA
65 AC-TTTTTCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAA-CAAAAATGTAAA
*
5687 AAACATTCAAATTTAAATCAATTTTGAGATTATAAAACCATT
128 AAA-ATTTAAATTTAAATCAATTTTGAGATTATAAAACCATT
* *
5729 TAAAGTTAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAATGAAT
1 TAAAGTGAGTAATAAGGCTTTTGAAGGAATG-GTGACTATAAATGGACTTTTCTTGCCAATGAAT
* * * * * * * *
5794 -GTTCTCTTCTTTATGTTTCTC-TGGGTAGACGTTCAATTATAATATGTTTTAAAAAGAAAAGCA
65 ACTT-T-TTCTTCATGTTTCTCAT-GGTAGACATTCAATTCTAGTATGTTTTAACAA-AAATGTA
* * *
5857 AAAAATTTTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
126 AAAAAATTT-AAATTTAAATCAATTTTGAGATTATAAAACCATT
5901 T
1 T
Statistics
Matches: 843, Mismatches: 153, Indels: 67
0.79 0.14 0.06
Matches are distributed among these distances:
168 6 0.01
169 121 0.14
170 10 0.01
171 115 0.14
172 569 0.67
173 19 0.02
174 3 0.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (168 bp):
TAAAGTGAGTAATAAGGCTTTTGAAGGAATGGTGACTATAAATGGACTTTTCTTGCCAATGAATA
CTTTTTCTTCATGTTTCTCATGGTAGACATTCAATTCTAGTATGTTTTAACAAAAATGTAAAAAA
ATTTAAATTTAAATCAATTTTGAGATTATAAAACCATT
Found at i:5701 original size:516 final size:513
Alignment explanation
Indices: 4708--5901 Score: 1383
Period size: 516 Copynumber: 2.3 Consensus size: 513
4698 NNNTAAATTG
* * * * *
4708 AGTAATAAGGCTCTTGAAGGAATGGGTGACTATAAATGGACTTTTCTAGCCAATGAATACTTTTC
1 AGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAATGAA-ACTTCTC
* * * * * * * * * * * * * **
4773 -TATTCATGTTTCTCATGGTATA-ATTCAATTCTAGTCTATTTTAACTAA-AAATGTACAAAACA
65 TTCTTCATGTTTCTCAGGGTAGACGTTCAATTATAATATGTTTGAA-AAAGAAAAGCAAAAAATT
* * * * *
4835 TTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGCGTAATAAGGCTCTTGAAGGA
129 TTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTCTTGAAGCA
* * * *
4900 GTGGGTGACTATAAATGAACTTCTCTTCCCAATGAATGCCTTTTTCTTTACATTTCTCAAGGTAG
194 ATGAGTGACTATAAATGAACTTCTCTTCCCAATGAATACCTTTTTCTTTACATTTCTCAAGGTAA
* *
4965 GCATTCAATTAGAGTTTGTTTAACTAAAAATTTAAAAAATTCAGCTTAAAATCAATTATGGCATT
259 GCATTCAATTAGAGTTTGTTTAACCAAAAATTTAAAAAATTCAGATTAAAATCAATTATGGCATT
* * * * *
5030 ACGAAACTATTTAAAGCGAGTACTAAGGATTTTGAAGGTATGGGTGAATATAAATAGACTTTTCT
324 ACAAAACCATTTAAAGCGAGTACTAAGGATCTTGAAGGAATGGATGAATATAAATAGACTTTTCT
* * * * *
5095 TGCCAATGAATGCTTTTATCTTCATGTTTCTCAAAGTAGACATTTAATTCTAGTATGTTTTAACA
389 TGCCAATGAATACTTTTATATTCATGTTTCTCAAAGCAGACATTCAATTCTAGTATATTTTAACA
* * *
5160 AAAACTGTATAAAAAATTTAAATTTAAATCAATTTTTAGATTATAAAACCATTTGAAGTA
454 AAAACTGTATAAAAAATTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTA
* *
5220 AGTAATAAGGTTTTTGAAGGAAT-AGGTTACTATAAATGGACTTCTCTTGCC-ATGGAAACTTCT
1 AGTAATAAGGCTTTTGAAGGAATGA-GTGACTATAAATGGACTTCTCTTGCCAAT-GAAACTTCT
* *
5283 CTTCTTCATGTTTCTCAGGGTAGACAGTT-AATTATAATATGTTTGAAATAGAAAAGCAAAACAT
64 CTTCTTCATGTTTCTCAGGGTAGAC-GTTCAATTATAATATGTTTGAAAAAGAAAAGCAAAAAAT
* * *
5347 TTTGAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGTGATTAATAAGGCTTTTGAAGC
128 TTTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTCTTGAAGC
* * * * * * ** *
5412 AATGAGTGAGTATAAATTG-TCTTTTTTTGCCAATGAATACTTTTTTCTTTATGTTTCTCATGGT
193 AATGAGTGACTATAAA-TGAACTTCTCTTCCCAATGAATACCTTTTTCTTTACATTTCTCAAGGT
** * *
5476 ATAG-ATTCAATTCTAGTCTAT-TTTAACCAAAAATGTATAAAACATT-AGAATTTAAATCAATT
257 A-AGCATTCAATTAGAGT-T-TGTTTAACCAAAAAT-T-TAAAAAATTCAG-ATTAAAATCAATT
* * * *
5538 TTGAG-ATTATAAAACCATTTAAA-CTGAGTTA-TAAGGCTCTTGAAGGAATGGATGACTATAAA
316 ATG-GCATTACAAAACCATTTAAAGC-GAG-TACTAAGGATCTTGAAGGAATGGATGAATATAAA
* * *** ***
5600 TGGACTTTTCTTGCCAATGAATACTTTTTTATTCATGTTTCTCGTGGCATTGATTCAATTCTAGT
378 TAGACTTTTCTTGCCAATGAATACTTTTATATTCATGTTTCTCAAAGCAGACATTCAATTCTAGT
*
5665 CTATTTTAACCAAAAA-TGTA-AAAAACATTCAAATTTAAATCAATTTTGAGATTATAAAACCAT
443 ATATTTTAA-CAAAAACTGTATAAAAA-ATTCAAATTTAAATCAATTTTGAGATTATAAAACCAT
*
5728 TTAAAGTT
506 TTAAAGTA
**
5736 AGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAATGAATGTTCTCT
1 AGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAATGAAACTTCTCT
* * *
5801 TCTTTATGTTTCTCTGGGTAGACGTTCAATTATAATATGTTTTAAAAAGAAAAGCAAAAAATTTT
66 TCTTCATGTTTCTCAGGGTAGACGTTCAATTATAATATGTTTGAAAAAGAAAAGCAAAAAATTTT
5866 GAACTTAAAATCAATTTTGAGATTATAAAACCATTT
131 GAACTTAAAATCAATTTTGAGATTATAAAACCATTT
Statistics
Matches: 573, Mismatches: 88, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
511 8 0.01
512 67 0.12
513 138 0.24
514 18 0.03
515 13 0.02
516 317 0.55
517 12 0.02
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (513 bp):
AGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGACTTCTCTTGCCAATGAAACTTCTCT
TCTTCATGTTTCTCAGGGTAGACGTTCAATTATAATATGTTTGAAAAAGAAAAGCAAAAAATTTT
GAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTCTTGAAGCAAT
GAGTGACTATAAATGAACTTCTCTTCCCAATGAATACCTTTTTCTTTACATTTCTCAAGGTAAGC
ATTCAATTAGAGTTTGTTTAACCAAAAATTTAAAAAATTCAGATTAAAATCAATTATGGCATTAC
AAAACCATTTAAAGCGAGTACTAAGGATCTTGAAGGAATGGATGAATATAAATAGACTTTTCTTG
CCAATGAATACTTTTATATTCATGTTTCTCAAAGCAGACATTCAATTCTAGTATATTTTAACAAA
AACTGTATAAAAAATTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTA
Done.