Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399927.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3158.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5660
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.25

Warning! 1645 characters in sequence are not A, C, G, or T


Found at i:4457 original size:172 final size:171

Alignment explanation


    Indices: 4164--4484  Score: 471
    Period size: 172  Copynumber: 1.9  Consensus size: 171

       4154 NNNNNNNNNN

                        *      *                           *          *  *   
       4164 ATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACTATAAATGGGCTTCTCTTGCCGATG
          1 ATTTAAAGTGAGCAATAAGACTTTTGAAGGAATGAGTGACTATAAATAGGCTTCTCTTACCAATG

                 *                                           *               
       4229 AATACTTTTTCTTCATATTTCTAGAGGTAGACATTCAATTATAATATGTTTTAACCAAAAATGTG
         66 AATACCTTTTCTTCATATTTCTAGAGGTAGACATTCAATTATAATATGTGTTAACCAAAAATGTG

                    *                                 
       4294 AAAAAAGATTCAACTTAAAATGAATTGTAACATCGTAAAACC
        131 AAAAAAG-CTCAACTTAAAATGAATTGTAACATCGTAAAACC

                                          *   *  *           *   *           
       4336 ATTTAAAGTGAGCAATAAGACTTTTGAAGGTATGCGTTACTATAAATAGTCTTTTCTTACCAATG
          1 ATTTAAAGTGAGCAATAAGACTTTTGAAGGAATGAGTGACTATAAATAGGCTTCTCTTACCAATG

                            *     * *                    *                   
       4401 AATACCTTTTCTTCATGTTTCTCGGGGTAGACATTCAATTATAATCTGTGTTAACCAAAAATGTG
         66 AATACCTTTTCTTCATATTTCTAGAGGTAGACATTCAATTATAATATGTGTTAACCAAAAATGTG

                 *             
       4466 AAAAATGCTCAACTTAAAA
        131 AAAAAAGCTCAACTTAAAA

       4485 ATAATTATTA


Statistics
Matches: 131,  Mismatches: 18, Indels: 1
        0.87            0.12        0.01

Matches are distributed among these distances:
 171   11  0.08
 172  120  0.92

ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35


Consensus pattern (171 bp):   
ATTTAAAGTGAGCAATAAGACTTTTGAAGGAATGAGTGACTATAAATAGGCTTCTCTTACCAATG
AATACCTTTTCTTCATATTTCTAGAGGTAGACATTCAATTATAATATGTGTTAACCAAAAATGTG
AAAAAAGCTCAACTTAAAATGAATTGTAACATCGTAAAACC
Done.