Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399928.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3159.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1678
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.21

Warning! 564 characters in sequence are not A, C, G, or T


Found at i:1486 original size:2 final size:2

Alignment explanation


    Indices: 1473--1507  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       1463 TATCTAAACA

                      *                                         
       1473 AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       1508 TCAAAATTAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:1562 original size:27 final size:28

Alignment explanation


    Indices: 1510--1567  Score: 84
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1500 GAGAGAGATC

                                        
       1510 AAAATTAACCACAATACTCCTAAAGTTA
          1 AAAATTAACCACAATACTCCTAAAGTTA

                            *            
       1538 AAAATTAACCAC-ATGGCTCCT-AAGTTA
          1 AAAATTAACCACAAT-ACTCCTAAAGTTA

               
       1565 AAA
          1 AAA

       1568 TATTTATTAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  27   11  0.39
  28   17  0.61

ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24


Consensus pattern (28 bp):   
AAAATTAACCACAATACTCCTAAAGTTA
Done.