Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399932.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3162.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4421
ACGTcount: A:0.16, C:0.06, G:0.05, T:0.17

Warning! 2450 characters in sequence are not A, C, G, or T


Found at i:3424 original size:170 final size:160

Alignment explanation


    Indices: 3227--3547  Score: 335
    Period size: 170  Copynumber: 1.9  Consensus size: 160

       3217 TCTTTAAATT

                                         *   *              **      *        
       3227 GCTTTATAATCTCATAATTAATTTTAAGTTGAAGTTTTTTACATTATTGGTTAAAATAGACTATA
          1 GCTTTATAATCTCATAATTAATTTTAAGTAGAAATTTTTTACATT-TTAATTAAAACAGACTATA

                         *                               *  **               
       3292 ATTGAATGC-TTATCTCGAA-AAA-AGTAAGAAA-AAGGCATTCATTGGTAAAAAAAGTCCATTT
         65 ATTGAAT-CTTTACCTC-AAGAAACAGTAAGAAACAA-GCATTCAGTGACAAAAAAAGTCCATTT

                   *         *                
       3353 ATAGTCATTCATTCCTTCAAAAGCCTTAGTACTG
        127 ATAGTCACTCATTCCTTAAAAAGCCTTAGTACTG

                                         **                   **             
       3387 GCNNNNNNNNNNTTTATAATCTCATAATTTGTTTTAAGTAGAAATTTTTTTTATTTTAATTAAAA
          1 GC----------TTTATAATCTCATAATTAATTTTAAGTAGAAATTTTTTACATTTTAATTAAAA

                                             *                        *      
       3452 CAGACTATAATTGAATCTTTACCTCAAGAAACATTAAGAAACAAGCATTCAGTGACAAGAAAAGT
         56 CAGACTATAATTGAATCTTTACCTCAAGAAACAGTAAGAAACAAGCATTCAGTGACAAAAAAAGT

                                           
       3517 CCATTTATAGTCACTCATTCCTTAAAAAGCC
        121 CCATTTATAGTCACTCATTCCTTAAAAAGCC

       3548 ATATTACTCA


Statistics
Matches: 130,  Mismatches: 17, Indels: 18
        0.79            0.10        0.11

Matches are distributed among these distances:
 160    2  0.02
 168    3  0.02
 169   32  0.25
 170   91  0.70
 171    2  0.02

ACGTcount: A:0.37, C:0.13, G:0.11, T:0.35


Consensus pattern (160 bp):   
GCTTTATAATCTCATAATTAATTTTAAGTAGAAATTTTTTACATTTTAATTAAAACAGACTATAA
TTGAATCTTTACCTCAAGAAACAGTAAGAAACAAGCATTCAGTGACAAAAAAAGTCCATTTATAG
TCACTCATTCCTTAAAAAGCCTTAGTACTG
Done.