Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399937.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3167.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:912 original size:171 final size:161

Alignment explanation


    Indices: 712--1036  Score: 355
    Period size: 171  Copynumber: 2.0  Consensus size: 161

        702 NNNNNNNNNT

                 *                             *           *    *  *         
        712 TAAAGCGAGTAATAAGGCTTTTAAAGGAATGAGAGCCTATAAATAGATTTTTTTTGCCAATAAAT
          1 TAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATAGACTTTTCTTACCAATAAAT

             *      *                *              *    *                   
        777 ATTTTTTTTTTCATGTTTCTCAAGATAGACAATCAAATATTGTCTGTTTTAAT-AAATAATATAA
         66 ACTTTTTTCTTCATGTTTCTCAAGACAGACAATCAAATATAGTCTATTTTAATGAAA-AATATAA

                   *          *             
        841 AAAAATTCAACTTAAAATTAATTATTAGATTA
        130 AAAAATTAAACTTAAAATCAATTATTAGATTA

                                            *        *          *            
        873 TANNNNNNNNNNAAGTGAGTAATAAGGCTTTTGAAGGAATGGGAGACTATAAGTAGACTTTTCTT
          1 TA----------AAGTGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATAGACTTTTCTT

              *   *   *                       *      *    *                  
        938 ACTAATGAATGCTTTTTTCTTCATGTTTCTCAAGGCAGACATTCAAGTATAGTCTATTTTAATGA
         56 ACCAATAAATACTTTTTTCTTCATGTTTCTCAAGACAGACAATCAAATATAGTCTATTTTAATGA

                                              
       1003 AAAATATAAAAAAATTAAACTTAAAATCAATTAT
        121 AAAATATAAAAAAATTAAACTTAAAATCAATTAT

       1037 GA


Statistics
Matches: 132,  Mismatches: 21, Indels: 12
        0.80            0.13        0.07

Matches are distributed among these distances:
 161    2  0.02
 171  127  0.96
 172    3  0.02

ACGTcount: A:0.39, C:0.09, G:0.13, T:0.36


Consensus pattern (161 bp):   
TAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGAGACTATAAATAGACTTTTCTTACCAATAAAT
ACTTTTTTCTTCATGTTTCTCAAGACAGACAATCAAATATAGTCTATTTTAATGAAAAATATAAA
AAAATTAAACTTAAAATCAATTATTAGATTA
Done.