Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399941.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3170.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.28

Warning! 526 characters in sequence are not A, C, G, or T


Found at i:659 original size:172 final size:164

Alignment explanation


    Indices: 299--720  Score: 368
    Period size: 172  Copynumber: 2.5  Consensus size: 164

        289 TTTTTGGTTC

                       *                *                  *          *      
        299 AAACAGACTAGGATTGAATGTCTACCTTCAGAAACATGATGAAAAAAGTATTAATTGGTAAGAAA
          1 AAACAGACTAGAATTGAATGTCTACCTTGAGAAACATGATGAAAAAACTATTAATTGGCAAGAAA

               *                         *            * *                    
        364 AGTGCATTTATAGTCATCCATTCCTTCAAGAGCGTTAGTACTTAGTTTAAATTGTTTTATAATCT
         66 AGTCCATTTATAGTCATCCATTCCTTCAAAAGCGTTAGTACTAACTTTAAATTGTTTTATAATCT

                    *                             **  
        429 CAAAATTGTTTTAAATTTGAATGTTTTGTANNNNNNNNNNTA
        131 CAAAATTGATTTAAATTTGAATGTTTTGTA--------GTTA

               *     *                *                      *  *            
        471 AAATAGACTGGAATTGAATGTCTACCATGAGAAACATGATGAAAAAACTTTTCATTGGCAAGAAA
          1 AAACAGACTAGAATTGAATGTCTACCTTGAGAAACATGATGAAAAAACTATTAATTGGCAAGAAA

                       *  *                        *                         
        536 AGTCCATTTATTGTGA-CCTATTCCTTCAAAAG-GTTTATTACTAACTTTAAATAT-TTTTATAA
         66 AGTCCATTTATAGTCATCC-ATTCCTTCAAAAGCG-TTAGTACTAACTTTAAAT-TGTTTTATAA

                                                    **    
        598 TCTCAAAATTGATTTAAATTTGAAT-TCTTTGNNNNNNNNNNGTTA
        128 TCTCAAAATTGATTTAAATTTGAATGT-TTTG--------TAGTTA

                                                *  *     **     **    * *    
        643 AAACAGACTAGAATTGAATGTCTACCTTGAGAAACAAGAAGAAAATGC-ATTCGTTGGTAGGAAA
          1 AAACAGACTAGAATTGAATGTCTACCTTGAGAAACATGATGAAAAAACTATTAATTGGCAAGAAA

                          
        707 AGTCCATTTATAGT
         66 AGTCCATTTATAGT

        721 TACTCATACG


Statistics
Matches: 205,  Mismatches: 33, Indels: 25
        0.78            0.13        0.10

Matches are distributed among these distances:
 171   29  0.14
 172  175  0.85
 173    1  0.00

ACGTcount: A:0.36, C:0.11, G:0.15, T:0.33


Consensus pattern (164 bp):   
AAACAGACTAGAATTGAATGTCTACCTTGAGAAACATGATGAAAAAACTATTAATTGGCAAGAAA
AGTCCATTTATAGTCATCCATTCCTTCAAAAGCGTTAGTACTAACTTTAAATTGTTTTATAATCT
CAAAATTGATTTAAATTTGAATGTTTTGTAGTTA
Done.