Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399947.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3176.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2874
ACGTcount: A:0.20, C:0.08, G:0.07, T:0.21

Warning! 1251 characters in sequence are not A, C, G, or T


Found at i:1363 original size:171 final size:161

Alignment explanation


    Indices: 1159--1487  Score: 426
    Period size: 171  Copynumber: 2.0  Consensus size: 161

       1149 CCTTCGAAAG

                                                  *      *                   
       1159 CCTTATTACACGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTTAATTTTTTTATAT
          1 CCTTATTACACGCTTTAAATGGTTTTATAATCTCATAACTGATTTGAAGTTTAATTTTTTTATAT

                 *   *    *                               *         *        
       1224 TTTTGGTTATAACAGACTATAATTGAATGTCTACCTCAAGAAACATTAAGAAACAATCATTCACT
         66 TTTTGATTAAAACAAACTATAATTGAATGTCTACCTCAAGAAACATGAAGAAACAAGCATTCACT

                                            
       1289 GGCAAAAAAAGT-TCATTTATAGTCACCCATT
        131 GGCAAAAAAAGTCT-ATTTATAGTCACCCATT

                               *                *                            
       1320 CCTNNNNNNNNNNTATTACTCGCTTTAAATGGTTTTGTAATCTCATAACTGATTTGAAGTTTAAT
          1 CCT----------TATTACACGCTTTAAATGGTTTTATAATCTCATAACTGATTTGAAGTTTAAT

                                                          * *     *          
       1385 TTTTTTATATTTTTGATTAAAACAAACTATAATTGAATGTCTACCTTATGAAACGTGAAGAAACA
         56 TTTTTTATATTTTTGATTAAAACAAACTATAATTGAATGTCTACCTCAAGAAACATGAAGAAACA

                    *      *                      
       1450 AGCATTCATTGGCAAGAAAAGTCTATTTATAGTCACCC
        121 AGCATTCACTGGCAAAAAAAGTCTATTTATAGTCACCC

       1488 NNNNNNNNNN


Statistics
Matches: 143,  Mismatches: 14, Indels: 12
        0.85            0.08        0.07

Matches are distributed among these distances:
 161    3  0.02
 171  139  0.97
 172    1  0.01

ACGTcount: A:0.34, C:0.14, G:0.11, T:0.38


Consensus pattern (161 bp):   
CCTTATTACACGCTTTAAATGGTTTTATAATCTCATAACTGATTTGAAGTTTAATTTTTTTATAT
TTTTGATTAAAACAAACTATAATTGAATGTCTACCTCAAGAAACATGAAGAAACAAGCATTCACT
GGCAAAAAAAGTCTATTTATAGTCACCCATT
Done.