Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397280.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_77.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1703557
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.33
Warning! 66023 characters in sequence are not A, C, G, or T
File 4 of 6
Found at i:928436 original size:29 final size:28
Alignment explanation
Indices: 928375--928445 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 28
928365 TTTTCTTCTC
*
928375 TTAAATTAAGACAAACATATCTTCTTAT
1 TTAAATTAAGACAAACATATCTTCCTAT
* * * *
928403 CTAAATTAAGACCAAACATGTTTTCCTGT
1 TTAAATTAAGA-CAAACATATCTTCCTAT
* *
928432 TTAAACTAAAACAA
1 TTAAATTAAGACAA
928446 GCATGTTAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
28 13 0.38
29 21 0.62
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.34
Consensus pattern (28 bp):
TTAAATTAAGACAAACATATCTTCCTAT
Found at i:930291 original size:54 final size:53
Alignment explanation
Indices: 930211--930450 Score: 146
Period size: 55 Copynumber: 4.4 Consensus size: 53
930201 GGTGTGGTAT
* * * * *
930211 AACTAAAATTTTCGACATAGCGTGTAACAACTAGA-TCTTCAAATGACTTGTAAC
1 AACT-AAATTTTCAACATGGC-TGTAACAACTAAATTCTTAAAATGACGTGTAAC
* * *
930265 AACTACAGTTTTCAACATGGCATGTAACAACTAAATTTTTAAAATGGCGTGTAAC
1 AACTA-AATTTTCAACATGGC-TGTAACAACTAAATTCTTAAAATGACGTGTAAC
* * * *
930320 AACTAAATCTTT-AACATGGGCTGTAACAACTATATTTTTCAATATGGTATGTG-AA-
1 AACTAAAT-TTTCAACAT-GGCTGTAACAACTAAATTCTT-AAAAT-G-ACGTGTAAC
* ** * * * * * *
930375 AACTAAATCTTCAACACAGCTTGTAACAACTACATTTTTCAACATGGCATATAAC
1 AACTAAATTTTCAACATGGC-TGTAACAACTAAATTCTT-AAAATGACGTGTAAC
* *
930430 AACTAAATCTTCAATATGGCT
1 AACTAAATTTTCAACATGGCT
930451 TCTAACAATC
Statistics
Matches: 149, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
53 2 0.01
54 60 0.40
55 81 0.54
56 3 0.02
57 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (53 bp):
AACTAAATTTTCAACATGGCTGTAACAACTAAATTCTTAAAATGACGTGTAAC
Found at i:930297 original size:82 final size:82
Alignment explanation
Indices: 930211--930434 Score: 222
Period size: 82 Copynumber: 2.7 Consensus size: 82
930201 GGTGTGGTAT
* *
930211 AACTAAAATTTTCGACATAGCGTGTAACAACTAGATCTTCAA-AT-GACTTGTAACAACTACAGT
1 AACT-AAATTTTCAACATAGCGTGTAACAACTAAATCTTCAACATGGAC-TGTAACAACTACAGT
930274 TTTCAACATGGCATGT-AA
64 TTTCAACATGGCATGTGAA
* * * * * * *
930292 CAACTAAATTTTTAAAATGGCGTGTAACAACTAAATCTTTAACATGGGCTGTAACAACTATATTT
1 -AACTAAATTTTCAACATAGCGTGTAACAACTAAATCTTCAACATGGACTGTAACAACTACAGTT
* *
930357 TTCAATATGGTATGTGAA
65 TTCAACATGGCATGTGAA
* * * * * *
930375 AACTAAATCTTCAACACAGCTTGTAACAACTACATTTTTCAACATGG-CATATAACAACTA
1 AACTAAATTTTCAACATAGCGTGTAACAACTA-AATCTTCAACATGGAC-TGTAACAACTA
930435 AATCTTCAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
81 31 0.27
82 60 0.52
83 25 0.22
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (82 bp):
AACTAAATTTTCAACATAGCGTGTAACAACTAAATCTTCAACATGGACTGTAACAACTACAGTTT
TCAACATGGCATGTGAA
Found at i:930303 original size:27 final size:27
Alignment explanation
Indices: 930211--930631 Score: 303
Period size: 27 Copynumber: 15.4 Consensus size: 27
930201 GGTGTGGTAT
* * *
930211 AACTAAAATTTTCGACATAGCGTGTAAC
1 AACT-AAATTTTCAACATGGCATGTAAC
* * * *
930239 AACTAGATCTTCAA-ATGACTTGTAAC
1 AACTAAATTTTCAACATGGCATGTAAC
*
930265 AACTACAGTTTTCAACATGGCATGTAAC
1 AACTA-AATTTTCAACATGGCATGTAAC
* * *
930293 AACTAAATTTTTAAAATGGCGTGTAAC
1 AACTAAATTTTCAACATGGCATGTAAC
930320 AACTAAATCTTT-AACATGGGC-TGTAAC
1 AACTAAAT-TTTCAACAT-GGCATGTAAC
* * *
930347 AACTATATTTTTCAATATGGTATGTGAA-
1 AACTA-AATTTTCAACATGGCATGT-AAC
* ** *
930375 AACTAAATCTTCAACACAGCTTGTAAC
1 AACTAAATTTTCAACATGGCATGTAAC
* *
930402 AACTACATTTTTCAACATGGCATATAAC
1 AACTA-AATTTTCAACATGGCATGTAAC
* * * *
930430 AACTAAATCTTCAATATGGCTTCTAAC
1 AACTAAATTTTCAACATGGCATGTAAC
* *
930457 AA-TCATATTTTTCAACATGGCATATAAC
1 AACT-A-AATTTTCAACATGGCATGTAAC
* * * * * *
930485 AATTAAATCTTCAATATGGCTTATAAT
1 AACTAAATTTTCAACATGGCATGTAAC
* * *
930512 AACCATATTTTTCAACATGGCATATAAC
1 AACTA-AATTTTCAACATGGCATGTAAC
* * * * *
930540 AATTAAATCTTCAATATGGCTTATAAC
1 AACTAAATTTTCAACATGGCATGTAAC
* * *
930567 AACTACATTTTGAACATGGCATATAAC
1 AACTAAATTTTCAACATGGCATGTAAC
* *
930594 AATTAAATTTTCAATATGGCATGTAAC
1 AACTAAATTTTCAACATGGCATGTAAC
*
930621 AACTAATTTTT
1 AACTAAATTTT
930632 TTAAAAAAAA
Statistics
Matches: 306, Mismatches: 73, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
26 17 0.06
27 186 0.61
28 100 0.33
29 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (27 bp):
AACTAAATTTTCAACATGGCATGTAAC
Found at i:930324 original size:55 final size:55
Alignment explanation
Indices: 930261--930631 Score: 394
Period size: 55 Copynumber: 6.8 Consensus size: 55
930251 AAATGACTTG
* * * * * * *
930261 TAACAACTACAGTTTTCAACATGGCATGTAACAACTAAATTTTT-AAAATGGCGTG
1 TAACAACTA-AATCTTCAACATGGCTTGTAACAACTATATTTTTCAACATGGCATA
* * * *
930316 TAACAACTAAATCTTTAACATGGGC-TGTAACAACTATATTTTTCAATATGGTATG
1 TAACAACTAAATCTTCAACAT-GGCTTGTAACAACTATATTTTTCAACATGGCATA
** *
930371 TGAA-AACTAAATCTTCAACACAGCTTGTAACAACTACATTTTTCAACATGGCATA
1 T-AACAACTAAATCTTCAACATGGCTTGTAACAACTATATTTTTCAACATGGCATA
* *
930426 TAACAACTAAATCTTCAATATGGCTTCTAACAA-TCATATTTTTCAACATGGCATA
1 TAACAACTAAATCTTCAACATGGCTTGTAACAACT-ATATTTTTCAACATGGCATA
* * * * *
930481 TAACAATTAAATCTTCAATATGGCTTATAATAACCATATTTTTCAACATGGCATA
1 TAACAACTAAATCTTCAACATGGCTTGTAACAACTATATTTTTCAACATGGCATA
* * * * *
930536 TAACAATTAAATCTTCAATATGGCTTATAACAACTACA-TTTTGAACATGGCATA
1 TAACAACTAAATCTTCAACATGGCTTGTAACAACTATATTTTTCAACATGGCATA
* * * *
930590 TAACAATTAAATTTTCAATATGGCATGTAACAACTA-ATTTTT
1 TAACAACTAAATCTTCAACATGGCTTGTAACAACTATATTTTT
930632 TTAAAAAAAA
Statistics
Matches: 278, Mismatches: 30, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.00
54 83 0.30
55 192 0.69
56 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (55 bp):
TAACAACTAAATCTTCAACATGGCTTGTAACAACTATATTTTTCAACATGGCATA
Found at i:930503 original size:137 final size:137
Alignment explanation
Indices: 930257--930503 Score: 329
Period size: 137 Copynumber: 1.8 Consensus size: 137
930247 CTTCAAATGA
* * * *
930257 CTTGTAACAACTACAGTTTTCAACATGGCATGTAACAACTAAATTTTTAAAATGGCGTGTAACAA
1 CTTGTAACAACTACAGTTTTCAACATGGCATATAACAACTAAATCTTCAAAATGGCGTCTAACAA
* * *
930322 CTAAATCTTTAACATGGGCTGTAACAACTATATTTTTCAATATGGTATGTGAAAACTAAATCTTC
66 CTAAATCTTTAACATGGGCTATAACAACTATAATCTTCAATATGGTATGTGAAAACTAAATCTTC
930387 AACACAG
131 AACACAG
* * *
930394 CTTGTAACAACTACATTTTTCAACATGGCATATAACAACTAAATCTTCAATATGGCTTCTAACAA
1 CTTGTAACAACTACAGTTTTCAACATGGCATATAACAACTAAATCTTCAAAATGGCGTCTAACAA
* * *
930459 -TCATATTTTTCAACAT-GGCATATAACAATTA-AATCTTCAATATGG
66 CT-AAATCTTT-AACATGGGC-TATAACAACTATAATCTTCAATATGG
930504 CTTATAATAA
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
136 1 0.01
137 79 0.84
138 14 0.15
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (137 bp):
CTTGTAACAACTACAGTTTTCAACATGGCATATAACAACTAAATCTTCAAAATGGCGTCTAACAA
CTAAATCTTTAACATGGGCTATAACAACTATAATCTTCAATATGGTATGTGAAAACTAAATCTTC
AACACAG
Found at i:934496 original size:30 final size:30
Alignment explanation
Indices: 934460--934519 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
934450 ATTGAAATTA
934460 AATAGACTCATTAAGTTCAGGCTCTAATCT
1 AATAGACTCATTAAGTTCAGGCTCTAATCT
934490 AATAGACTCATTAAGTTCAGGCTCTAATCT
1 AATAGACTCATTAAGTTCAGGCTCTAATCT
934520 GCTACATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (30 bp):
AATAGACTCATTAAGTTCAGGCTCTAATCT
Found at i:935763 original size:21 final size:22
Alignment explanation
Indices: 935738--935781 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
935728 AAGTGATTAA
935738 TTTAAGTTATTTTA-GTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
*
935759 TTTAAGTTATTTTATTTTAAAT
1 TTTAAGTTATTTTATGTTAAAT
935781 T
1 T
935782 ACTTTAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (22 bp):
TTTAAGTTATTTTATGTTAAAT
Found at i:937351 original size:21 final size:22
Alignment explanation
Indices: 937315--937356 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
937305 GTAGTAGAAT
*
937315 TTTAACTGACAATAACCTAAAA
1 TTTAACTGAAAATAACCTAAAA
*
937337 TTTAACT-AAAATAACTTAAA
1 TTTAACTGAAAATAACCTAAA
937357 TTAATCACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.31
Consensus pattern (22 bp):
TTTAACTGAAAATAACCTAAAA
Found at i:938048 original size:27 final size:28
Alignment explanation
Indices: 938012--938095 Score: 134
Period size: 28 Copynumber: 3.0 Consensus size: 28
938002 AATGTCGATA
938012 TAAGTGCAATTAA-GGGGCTGAATTGGT
1 TAAGTGCAATTAAGGGGGCTGAATTGGT
* *
938039 TAAGTCCAATTAAGGGGGCTGAATTAGT
1 TAAGTGCAATTAAGGGGGCTGAATTGGT
*
938067 TCAGTGCAATTAAGGGGGCTGAATTGGT
1 TAAGTGCAATTAAGGGGGCTGAATTGGT
938095 T
1 T
938096 GTTAAGCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 12 0.24
28 39 0.76
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.30
Consensus pattern (28 bp):
TAAGTGCAATTAAGGGGGCTGAATTGGT
Found at i:938182 original size:63 final size:63
Alignment explanation
Indices: 938078--938279 Score: 289
Period size: 63 Copynumber: 3.2 Consensus size: 63
938068 CAGTGCAATT
* * * *
938078 AAGGGGGCTGAATTGGTTGTTAAGCATTTCTAGTTCTCTTATAATTTTACAGAATTTGTTATA
1 AAGGGGGCTGAATTGGTTATTAAGTATTCCTAATTCTCTTATAATTTTACAGAATTTGTTATA
* * * *
938141 AAGGCGGCTGAATTAGTTATTAAGTATTCCTAACTCTCTTATAATTTTACATAATTTGTTATTA
1 AAGGGGGCTGAATTGGTTATTAAGTATTCCTAATTCTCTTATAATTTTACAGAATTTGTTA-TA
* * *
938205 AA-GGAGCTGAATTGGTTATTAAGTATTCCTAATTCTCTTCTAATTTTACAGAATTTGTTATT
1 AAGGGGGCTGAATTGGTTATTAAGTATTCCTAATTCTCTTATAATTTTACAGAATTTGTTATA
938267 AAGGGGGCTGAAT
1 AAGGGGGCTGAAT
938280 CAGTACATAA
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
62 3 0.02
63 114 0.94
64 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (63 bp):
AAGGGGGCTGAATTGGTTATTAAGTATTCCTAATTCTCTTATAATTTTACAGAATTTGTTATA
Found at i:938375 original size:15 final size:15
Alignment explanation
Indices: 938355--938387 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
938345 ATGCTCAACA
*
938355 AATATTCAGTCATGT
1 AATATTCAGTCAGGT
938370 AATATTCAGTCAGGT
1 AATATTCAGTCAGGT
938385 AAT
1 AAT
938388 GCCAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (15 bp):
AATATTCAGTCAGGT
Found at i:940427 original size:16 final size:16
Alignment explanation
Indices: 940393--940461 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 16
940383 TTTAAAATTT
* * *
940393 AAAATAAAAAATTATA
1 AAAATAAATAATAACA
*
940409 AAAAT-AATTATAACA
1 AAAATAAATAATAACA
940424 AAAATAAATAATAAC-
1 AAAATAAATAATAACA
*
940439 AACATCAAAT-ATAAC-
1 AAAAT-AAATAATAACA
940454 AAAATAAA
1 AAAATAAA
940462 AGTTCAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
14 3 0.07
15 24 0.55
16 17 0.39
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAATAATAACA
Found at i:941874 original size:3 final size:3
Alignment explanation
Indices: 941866--941891 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
941856 AATATTGGTA
941866 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
941892 CTCTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:942124 original size:8 final size:8
Alignment explanation
Indices: 942113--942159 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
942103 ATATATATAC
942113 ATATATGT
1 ATATATGT
942121 ATATATGT
1 ATATATGT
*
942129 ATATACGT
1 ATATATGT
942137 ATA-A---
1 ATATATGT
942141 ATATATGT
1 ATATATGT
942149 ATATATGT
1 ATATATGT
942157 ATA
1 ATA
942160 AATAGTTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
4 3 0.09
5 1 0.03
7 1 0.03
8 29 0.85
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (8 bp):
ATATATGT
Found at i:942131 original size:20 final size:20
Alignment explanation
Indices: 942121--942163 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
942111 ACATATATGT
942121 ATATATGTATATACGTATAA
1 ATATATGTATATACGTATAA
*
942141 ATATATGTATATATGTATAA
1 ATATATGTATATACGTATAA
942161 ATA
1 ATA
942164 GTTAATTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (20 bp):
ATATATGTATATACGTATAA
Found at i:985238 original size:25 final size:25
Alignment explanation
Indices: 985184--985243 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
985174 CAATTTGTGA
* *
985184 ATATACGTGGCAAGGCCACGGGTTG
1 ATATACGTGGCAAGGCCACGAGCTG
* * *
985209 TTATACGTTGCAAGGCTACGAGCTG
1 ATATACGTGGCAAGGCCACGAGCTG
985234 ATATACGTGG
1 ATATACGTGG
985244 TTGCAACCAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (25 bp):
ATATACGTGGCAAGGCCACGAGCTG
Found at i:990046 original size:13 final size:13
Alignment explanation
Indices: 990015--990054 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
990005 GTTCCACTCA
*
990015 AGAGAAAGAAAAA
1 AGAGAAAGAAAAG
*
990028 AAAGAAAGAAAAG
1 AGAGAAAGAAAAG
*
990041 AGAGAAAGGAAAG
1 AGAGAAAGAAAAG
990054 A
1 A
990055 AAGGCTCAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AGAGAAAGAAAAG
Found at i:990058 original size:9 final size:9
Alignment explanation
Indices: 990014--990056 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
990004 GGTTCCACTC
990014 AAGAGAAAGA
1 AAGA-AAAGA
*
990024 AAAAAAAGA
1 AAGAAAAGA
990033 AAGAAAAGA
1 AAGAAAAGA
* *
990042 GAGAAAGGA
1 AAGAAAAGA
990051 AAGAAA
1 AAGAAA
990057 GGCTCAGTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 25 0.89
10 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (9 bp):
AAGAAAAGA
Found at i:1009599 original size:32 final size:33
Alignment explanation
Indices: 1009562--1009747 Score: 113
Period size: 36 Copynumber: 5.4 Consensus size: 33
1009552 CACTTGATTA
*
1009562 AAATTGTTTAATGAAG-TTGTGCCTAATTCATT
1 AAATTGTTTAATGAAGATTGCGCCTAATTCATT
* *
1009594 AAATTGTTTAATTAAGTCATTGCGCCTAATTGATT
1 AAATTGTTTAATGAAG--ATTGCGCCTAATTCATT
* * * *
1009629 AAATTTGTTTAATCAACTTATTGGGCCTAATTGATT
1 AAA-TTGTTTAATGAA--GATTGCGCCTAATTCATT
**** * * * *
1009665 AAATTAAACAATTATGTTAATTGGGCCTAATTAATT
1 AAATTGTTTAATGAAG---ATTGCGCCTAATTCATT
* * *
1009701 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
1 AAATTGTTTAATGAAG--ATTGCGCCTAATTCATT
1009736 AAATTGTTTAAT
1 AAATTGTTTAAT
1009748 TATTTTATTG
Statistics
Matches: 125, Mismatches: 20, Indels: 15
0.78 0.12 0.09
Matches are distributed among these distances:
32 15 0.12
35 53 0.42
36 57 0.46
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (33 bp):
AAATTGTTTAATGAAGATTGCGCCTAATTCATT
Found at i:1009657 original size:36 final size:35
Alignment explanation
Indices: 1009555--1009775 Score: 250
Period size: 35 Copynumber: 6.3 Consensus size: 35
1009545 TCTCAAGCAC
* *
1009555 TTGATTAAAATTGTTTAATGAAG---TTGTGCCTAA
1 TTGATT-AAATTGTTTAATTAAGTTATTGGGCCTAA
* * *
1009588 TTCATTAAATTGTTTAATTAAGTCATTGCGCCTAA
1 TTGATTAAATTGTTTAATTAAGTTATTGGGCCTAA
* *
1009623 TTGATTAAATTTGTTTAATCAACTTATTGGGCCTAA
1 TTGATTAAA-TTGTTTAATTAAGTTATTGGGCCTAA
**** *
1009659 TTGATTAAATTAAACAATTATGTTAATTGGGCCTAA
1 TTGATTAAATTGTTTAATTAAGTT-ATTGGGCCTAA
*
1009695 TTAATTAAATTGTTTAATTAAGTTATTGGGCCTAA
1 TTGATTAAATTGTTTAATTAAGTTATTGGGCCTAA
* **
1009730 TTAATTAAATTGTTTAATTATTTTATTGGGCCTAA
1 TTGATTAAATTGTTTAATTAAGTTATTGGGCCTAA
1009765 TTGATTAAATT
1 TTGATTAAATT
1009776 AAACAATTAA
Statistics
Matches: 159, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
32 15 0.09
33 5 0.03
35 79 0.50
36 60 0.38
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (35 bp):
TTGATTAAATTGTTTAATTAAGTTATTGGGCCTAA
Found at i:1009749 original size:71 final size:71
Alignment explanation
Indices: 1009555--1009775 Score: 254
Period size: 71 Copynumber: 3.2 Consensus size: 71
1009545 TCTCAAGCAC
* * * * *
1009555 TTGATTAAAATTGTTTAATGAAG---TTGTGCCTAATTCATTAAATTGTTTAATTAAG-TCATTG
1 TTGATT-AAATTGTTTAATCAAGTTATTGGGCCTAATTAATTAAATTGTTTAATTATGTTAATTG
*
1009616 CGCCTAA
65 GGCCTAA
* * ****
1009623 TTGATTAAATTTGTTTAATCAACTTATTGGGCCTAATTGATTAAATTAAACAATTATGTTAATTG
1 TTGATTAAA-TTGTTTAATCAAGTTATTGGGCCTAATTAATTAAATTGTTTAATTATGTTAATTG
1009688 GGCCTAA
65 GGCCTAA
* * *
1009695 TTAATTAAATTGTTTAATTAAGTTATTGGGCCTAATTAATTAAATTGTTTAATTAT-TTTATTGG
1 TTGATTAAATTGTTTAATCAAGTTATTGGGCCTAATTAATTAAATTGTTTAATTATGTTAATTGG
1009759 GCCTAA
66 GCCTAA
1009765 TTGATTAAATT
1 TTGATTAAATT
1009776 AAACAATTAA
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
67 3 0.02
68 17 0.13
70 23 0.18
71 65 0.51
72 19 0.15
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (71 bp):
TTGATTAAATTGTTTAATCAAGTTATTGGGCCTAATTAATTAAATTGTTTAATTATGTTAATTGG
GCCTAA
Found at i:1009766 original size:31 final size:32
Alignment explanation
Indices: 1009591--1009766 Score: 102
Period size: 36 Copynumber: 5.1 Consensus size: 32
1009581 TGCCTAATTC
* * *
1009591 ATTAAATTGTTTAATTAAGTCATTGCGCCTAATTG
1 ATTAAATTGTTTAATTAAGTTATTGGGCC--A-TA
* * *
1009626 ATTAAATTTGTTTAATCAACTTATTGGGCCTAATTG
1 ATTAAA-TTGTTTAATTAAGTTATTGGGCC--A-TA
**** *
1009662 ATTAAATTAAACAATTATGTTAATTGGGCCTAATTA
1 ATTAAATTGTTTAATTAAGTT-ATTGGGCC--A-TA
1009698 ATTAAATTGTTTAATTAAGTTATTGGGCCTAATTA
1 ATTAAATTGTTTAATTAAGTTATTGGGCC--A-TA
**
1009733 ATTAAATTGTTTAATTATTTTATTGGGCC-TA
1 ATTAAATTGTTTAATTAAGTTATTGGGCCATA
1009764 ATT
1 ATT
1009767 GATTAAATTA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
31 5 0.04
35 55 0.46
36 60 0.50
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (32 bp):
ATTAAATTGTTTAATTAAGTTATTGGGCCATA
Found at i:1016746 original size:29 final size:29
Alignment explanation
Indices: 1016709--1016996 Score: 282
Period size: 28 Copynumber: 10.0 Consensus size: 29
1016699 TGACAGTTTT
* * * *
1016709 AACAGGTTTTATCTTAAATTAGAGAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
*
1016738 AACATG-TTTGTCTTAATTTAGATAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
* * *
1016766 AACATGTGTTGTCCTAATTTAGAAAAAGAA
1 AACATGTTTTGTCTTAATTTAG-ACAAGAA
*
1016796 AACATG-TTTGTCTTAATTTAGACAATAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
*
1016824 AACATGTTTTGTATTAATTTAGACAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
* *
1016853 AGCAT-ATTTGTCTTAATTTAGACAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
*
1016881 AATATG-TTTGTCTTAATTTAAGACAAGAAA
1 AACATGTTTTGTCTTAATTT-AGACAAG-AA
* *
1016911 AATATGTTTTGTCTTAATATAGACAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAA
* * * * **
1016940 AACAT-ATTTGT-TACAACTTAGATAAGGT
1 AACATGTTTTGTCT-TAATTTAGACAAGAA
* *
1016968 AACATGTTTTATCTTAATTAAAGACAAGA
1 AACATGTTTTGTCTTAATT-TAGACAAGA
1016997 GTTGTCTTAA
Statistics
Matches: 214, Mismatches: 34, Indels: 21
0.80 0.13 0.08
Matches are distributed among these distances:
27 1 0.00
28 92 0.43
29 75 0.35
30 34 0.16
31 12 0.06
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.36
Consensus pattern (29 bp):
AACATGTTTTGTCTTAATTTAGACAAGAA
Found at i:1016751 original size:28 final size:28
Alignment explanation
Indices: 1016720--1016950 Score: 291
Period size: 28 Copynumber: 8.0 Consensus size: 28
1016710 ACAGGTTTTA
* *
1016720 TCTTAAATTAGAGAAGAAAACATGTTTG
1 TCTTAATTTAGACAAGAAAACATGTTTG
*
1016748 TCTTAATTTAGATAAGAAAACATGTGTTG
1 TCTTAATTTAGACAAGAAAACATGT-TTG
* *
1016777 TCCTAATTTAGAAAAAGAAAACATGTTTG
1 TCTTAATTTAG-ACAAGAAAACATGTTTG
*
1016806 TCTTAATTTAGACAATAAAACATGTTTTG
1 TCTTAATTTAGACAAGAAAACATG-TTTG
* * *
1016835 TATTAATTTAGACAAGAAAGCATATTTG
1 TCTTAATTTAGACAAGAAAACATGTTTG
*
1016863 TCTTAATTTAGACAAGAAAATATGTTTG
1 TCTTAATTTAGACAAGAAAACATGTTTG
*
1016891 TCTTAATTTAAGACAAGAAAAATATGTTTTG
1 TCTTAATTT-AGACAAG-AAAACATG-TTTG
* *
1016922 TCTTAATATAGACAAGAAAACATATTTG
1 TCTTAATTTAGACAAGAAAACATGTTTG
1016950 T
1 T
1016951 TACAACTTAG
Statistics
Matches: 179, Mismatches: 18, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
28 76 0.42
29 63 0.35
30 28 0.16
31 12 0.07
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (28 bp):
TCTTAATTTAGACAAGAAAACATGTTTG
Found at i:1016826 original size:58 final size:57
Alignment explanation
Indices: 1016720--1016950 Score: 279
Period size: 58 Copynumber: 4.0 Consensus size: 57
1016710 ACAGGTTTTA
* * *
1016720 TCTTAAATTAG-AGAAGAAAACATGTTTGTCTTAATTTAGATAAGAAAACATGTGTTG
1 TCTTAATTTAGAACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAACATGT-TTG
* * *
1016777 TCCTAATTTAGAAAAAGAAAACATGTTTGTCTTAATTTAGACAATAAAACATGTTTTG
1 TCTTAATTTAGAACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAACATG-TTTG
* * * *
1016835 TATTAATTTAG-ACAAGAAAGCATATTTGTCTTAATTTAGACAAGAAAATATGTTTG
1 TCTTAATTTAGAACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAACATGTTTG
* * *
1016891 TCTTAATTTA-AGACAAGAAAAATATGTTTTGTCTTAATATAGACAAGAAAACATATTTG
1 TCTTAATTTAGA-ACAAG-AAAACATG-TTTGTCTTAATTTAGACAAGAAAACATGTTTG
1016950 T
1 T
1016951 TACAACTTAG
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
56 13 0.09
57 50 0.34
58 55 0.37
59 31 0.21
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (57 bp):
TCTTAATTTAGAACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAACATGTTTG
Found at i:1016875 original size:57 final size:57
Alignment explanation
Indices: 1016709--1016944 Score: 278
Period size: 57 Copynumber: 4.1 Consensus size: 57
1016699 TGACAGTTTT
* * * * * *
1016709 AACAGGTTTTATCTTAAATTAGAGAAGAAAACATGTTTGTCTTAATTTAGATAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAA
* * * * *
1016766 AACATGTGTTGTCCTAATTTAGAAAAAGAAAACATGTTTGTCTTAATTTAGACAATAA
1 AACATGTTTTGTCTTAATTTAG-ACAAGAAAACATATTTGTCTTAATTTAGACAAGAA
* *
1016824 AACATGTTTTGTATTAATTTAGACAAGAAAGCATATTTGTCTTAATTTAGACAAGAA
1 AACATGTTTTGTCTTAATTTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAA
* *
1016881 AATATG-TTTGTCTTAATTTAAGACAAGAAAA-ATATGTTTTGTCTTAATATAGACAAGAA
1 AACATGTTTTGTCTTAATTT-AGACAAGAAAACATA---TTTGTCTTAATTTAGACAAGAA
1016940 AACAT
1 AACAT
1016945 ATTTGTTACA
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
56 15 0.10
57 63 0.41
58 51 0.33
59 25 0.16
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (57 bp):
AACATGTTTTGTCTTAATTTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAA
Found at i:1016950 original size:115 final size:115
Alignment explanation
Indices: 1016722--1016950 Score: 302
Period size: 115 Copynumber: 2.0 Consensus size: 115
1016712 AGGTTTTATC
* * *
1016722 TTAAATTAGAGAAGAAAACATGTTTGTCTTAATTTAGATAAGAAAACATGTGTTGTCCTAATTTA
1 TTAAATTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAAAACATGTGTTGTCCTAATTTA
* * *
1016787 GAAAAAGAAAACATGTTTGTCTTAATTTAGACAATAAAACATGTTTTGTA
66 GAAAAAGAAAACATGTTTGTCTTAATATAGACAAGAAAACATGATTTGTA
* * * *
1016837 TTAATTTAGACAAGAAAGCATATTTGTCTTAATTTAGACAAGAAAATATGT-TTGTCTTAATTTA
1 TTAAATTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAAAACATGTGTTGTCCTAATTTA
* *
1016901 -AGACAAGAAAAATATGTTTTGTCTTAATATAGACAAGAAAACAT-ATTTGT
66 GA-AAAAG-AAAACATG-TTTGTCTTAATATAGACAAGAAAACATGATTTGT
1016951 TACAACTTAG
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
113 1 0.01
114 16 0.16
115 57 0.58
116 25 0.25
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (115 bp):
TTAAATTAGACAAGAAAACATATTTGTCTTAATTTAGACAAGAAAACATGTGTTGTCCTAATTTA
GAAAAAGAAAACATGTTTGTCTTAATATAGACAAGAAAACATGATTTGTA
Found at i:1028424 original size:18 final size:18
Alignment explanation
Indices: 1028403--1028441 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1028393 GGCAATGCTT
* *
1028403 TTCTTTTTTTTCTTTTGC
1 TTCTTTCTTGTCTTTTGC
*
1028421 TTCTTTCTTGTCTTTTTC
1 TTCTTTCTTGTCTTTTGC
1028439 TTC
1 TTC
1028442 CTCTTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (18 bp):
TTCTTTCTTGTCTTTTGC
Found at i:1030052 original size:73 final size:73
Alignment explanation
Indices: 1029928--1030093 Score: 181
Period size: 73 Copynumber: 2.3 Consensus size: 73
1029918 CAAACAGAAT
* * * * *
1029928 GCTCTTAGTCAACTAACATTGCTACTTAGTCGCTTAAGTTGTTTATGTCTCTGAAC-CTAATTTC
1 GCTCTTAGTCAACTAACAATACTACTTAGTCGATTAAGTTGTTTATATCTCTAAACTC-AATTTC
**
1029992 TGACAGTGG
65 TGACAGTAA
* ** * * * *
1030001 GCTCTTAGTCGACTAACAATACTTTTTAGTTGATTAAGTTGTTTCTATCTCTAAACTCAGTTTTT
1 GCTCTTAGTCAACTAACAATACTACTTAGTCGATTAAGTTGTTTATATCTCTAAACTCAATTTCT
*
1030066 GACGGTAA
66 GACAGTAA
1030074 GCTCTTAGTCAACTAACAAT
1 GCTCTTAGTCAACTAACAAT
1030094 GTCACTCGGT
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
73 75 0.99
74 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (73 bp):
GCTCTTAGTCAACTAACAATACTACTTAGTCGATTAAGTTGTTTATATCTCTAAACTCAATTTCT
GACAGTAA
Found at i:1046608 original size:16 final size:16
Alignment explanation
Indices: 1046584--1046654 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
1046574 TCAATTATAA
* *
1046584 TATTGTTATTTTTAGT
1 TATTTTTATATTTAGT
*
1046600 TATTTTTATAATTAGTT
1 TATTTTTATATTTAG-T
* *
1046617 TATTTTTA-AGTGAGT
1 TATTTTTATATTTAGT
*
1046632 TATTTTAAT-TTTATGT
1 TATTTTTATATTTA-GT
1046648 TATTTTT
1 TATTTTT
1046655 TTTAATTTGG
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
15 10 0.23
16 24 0.56
17 9 0.21
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (16 bp):
TATTTTTATATTTAGT
Found at i:1071740 original size:29 final size:29
Alignment explanation
Indices: 1071600--1071914 Score: 305
Period size: 29 Copynumber: 10.8 Consensus size: 29
1071590 TTAAGATAAC
* * * *
1071600 TCTTGTCATTAATTAAGACAAAACAAGTTA
1 TCTTGTC-TAAATTAAGATAAAACATGTTT
* ** * *
1071630 TCTTGTCAAAATTGGGA-CAAATATGTTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
* * * * *
1071658 TTTTGTCTAGATTAAGACAAAAATATATTTT
1 TCTTGTCTAAATTAAGA-TAAAACAT-GTTT
* *
1071689 TCTTGTTTTAAATTAAGA-CAAACATGTTT
1 TCTTG-TCTAAATTAAGATAAAACATGTTT
1071718 TCTTGTCTAAATTAAGATAAAACATGTTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
*
1071747 TCTTATCTAAATTAAGAT-AAACATGTTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
* *
1071775 TCTTTGGCTAAATTAAGACAAAACATGTTT
1 TC-TTGTCTAAATTAAGATAAAACATGTTT
1071805 TCTTGTCTAAATTAAGATAAAACATGTTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
* ** *
1071834 TATTGTCTAAATTAAGATTCAATATGTTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
*
1071863 TCTTGTCTAAATTAAGAT-AAACATGGTT
1 TCTTGTCTAAATTAAGATAAAACATGTTT
* * * *
1071891 TCTAGTGTACATTAAGACAAAACA
1 TCTTGTCTAAATTAAGATAAAACA
1071915 GGTTAAAGCT
Statistics
Matches: 236, Mismatches: 41, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
28 63 0.27
29 126 0.53
30 30 0.13
31 7 0.03
32 10 0.04
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (29 bp):
TCTTGTCTAAATTAAGATAAAACATGTTT
Found at i:1078013 original size:34 final size:32
Alignment explanation
Indices: 1077941--1078027 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 32
1077931 TTTTAATGTC
* *
1077941 ATATATTTTATTTTGGTTTATTATTATAATCTT
1 ATATATTTTATTTT-ATTTATTAATATAATCTT
* *
1077974 ATATATTTTATTTTCATTTCTTTAATATAATTTT
1 ATATATTTTATTTT-ATTT-ATTAATATAATCTT
*
1078008 TTATATTATATATTTTATTT
1 ATATATT-T-TATTTTATTT
1078028 TACTTCTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 17 0.38
34 17 0.38
35 5 0.11
36 6 0.13
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (32 bp):
ATATATTTTATTTTATTTATTAATATAATCTT
Found at i:1078028 original size:19 final size:19
Alignment explanation
Indices: 1078006--1078132 Score: 85
Period size: 19 Copynumber: 6.8 Consensus size: 19
1077996 TAATATAATT
1078006 TTTTATATTATATATTTTA
1 TTTTATATTATATATTTTA
**
1078025 TTTTACT-TCTAT-TATATAAA
1 TTTTA-TAT-TATATAT-TTTA
1078045 TTTTA-ATTATTTATATTTTA
1 TTTTATATTA--TATATTTTA
* *
1078065 TTTTATTTTA-ATTTTTTA
1 TTTTATATTATATATTTTA
1078083 TTTTTATATTATAT-TTTTA
1 -TTTTATATTATATATTTTA
1078102 TTTTA-A-TAT-T-TTTTA
1 TTTTATATTATATATTTTA
1078117 TTTTA-ATTATAATATT
1 TTTTATATTAT-ATATT
1078133 ATAAAATATT
Statistics
Matches: 87, Mismatches: 7, Indels: 28
0.71 0.06 0.23
Matches are distributed among these distances:
15 12 0.14
16 6 0.07
17 1 0.01
18 15 0.17
19 26 0.30
20 21 0.24
21 6 0.07
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATATTATATATTTTA
Found at i:1078066 original size:29 final size:28
Alignment explanation
Indices: 1078007--1078101 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 28
1077997 AATATAATTT
* * *
1078007 TTTATATTATATATTTTATTTTACTTCTA
1 TTTATATTATATATTTTA-ATTATTTATA
1078036 -TTATA-TA-A-ATTTTAATTATTTATA
1 TTTATATTATATATTTTAATTATTTATA
* *
1078060 TTT-TATT-T-TATTTTAATTTTTTATT
1 TTTATATTATATATTTTAATTATTTATA
1078085 TTTATATTATAT-TTTTA
1 TTTATATTATATATTTTA
1078102 TTTTAATATT
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
24 9 0.17
25 26 0.48
26 5 0.09
27 8 0.15
28 6 0.11
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (28 bp):
TTTATATTATATATTTTAATTATTTATA
Found at i:1078106 original size:32 final size:32
Alignment explanation
Indices: 1078044--1078127 Score: 102
Period size: 32 Copynumber: 2.6 Consensus size: 32
1078034 TATTATATAA
* *
1078044 ATTTTAATTATTTATATTTTATTTTATTTTAAT
1 ATTTTTATT-TTTATATTATATTTTATTTTAAT
1078077 -TTTTTATTTTTATATTATATTTTTATTTTAAT
1 ATTTTTATTTTTATATTATA-TTTTATTTTAAT
1078109 ATTTTT-TATTTTA-ATTATA
1 ATTTTTAT-TTTTATATTATA
1078128 ATATTATAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
31 10 0.22
32 26 0.57
33 10 0.22
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (32 bp):
ATTTTTATTTTTATATTATATTTTATTTTAAT
Found at i:1078132 original size:40 final size:40
Alignment explanation
Indices: 1077967--1078135 Score: 143
Period size: 40 Copynumber: 4.2 Consensus size: 40
1077957 TTTATTATTA
* * * *
1077967 TAATCTTATATATTTTATTTTCATTTCT-TTAATATAATTTT
1 TAATATTATATATTTTATTTTAATTT-TATTATTTTAA-TTT
* * * * *
1078008 TTATATTATATATTTTATTTTACTTCTATTATATAAATTT
1 TAATATTATATATTTTATTTTAATTTTATTATTTTAATTT
1078048 TAATTATT-TATATTTTATTTT-ATTTTAATT-TTTT-ATTT
1 TAA-TATTATATATTTTATTTTAATTTT-ATTATTTTAATTT
* * *
1078086 TTATATTATAT-TTTTATTTTAATATTTTTTATTTTAATTA
1 TAATATTATATATTTTATTTTAAT-TTTATTATTTTAATTT
1078126 TAATATTATA
1 TAATATTATA
1078136 AAATATTTTT
Statistics
Matches: 102, Mismatches: 18, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
37 13 0.13
38 13 0.13
39 12 0.12
40 34 0.33
41 30 0.29
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (40 bp):
TAATATTATATATTTTATTTTAATTTTATTATTTTAATTT
Found at i:1080840 original size:49 final size:49
Alignment explanation
Indices: 1080721--1080957 Score: 197
Period size: 49 Copynumber: 4.8 Consensus size: 49
1080711 TCCATGGACA
* * * * * * * *
1080721 GAACATACATAATC-AACATCATAACATCGTCTGGAATCATCCATGGATG
1 GAACATACAT-ATCTCATATCATATCATCGTCCGGAATCATCTACGAACG
* * * *
1080770 GAGCATACATACCTCACATCATATCATCGTCCGGAATCATCTACGAATG
1 GAACATACATATCTCATATCATATCATCGTCCGGAATCATCTACGAACG
** * * * *
1080819 GAACATACATATCTTTTATCATATCATCGTCCAGAATTATCTTCAAACG
1 GAACATACATATCTCATATCATATCATCGTCCGGAATCATCTACGAACG
* * * ** * **
1080868 GAACATACATATTTTATATCATATCATCATCTAGAATTATCTTTGAACG
1 GAACATACATATCTCATATCATATCATCGTCCGGAATCATCTACGAACG
* **
1080917 GAACATATATATCTCATATCATATCATTATCCGGAATCATC
1 GAACATACATATCTCATATCATATCATCGTCCGGAATCATC
1080958 CATAGCTAGA
Statistics
Matches: 156, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
48 2 0.01
49 154 0.99
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (49 bp):
GAACATACATATCTCATATCATATCATCGTCCGGAATCATCTACGAACG
Found at i:1098299 original size:68 final size:68
Alignment explanation
Indices: 1098209--1098372 Score: 202
Period size: 68 Copynumber: 2.4 Consensus size: 68
1098199 ATCTTATGTA
* * * * ** *
1098209 GTATATGGAATATACATAATATACATTATCCCATGGAATTTATCATGCATACTTAATCACCTCGT
1 GTATATGGAATTTACATCATATACATAATCCCATAGAATACATCATGCATACTTAATCACCTCAT
1098274 ATG
66 ATG
* ** * *
1098277 GTATATGGAATTTACATCATATACACAATCTTATAGTATACATCATGCATACTTAATCATCTCAT
1 GTATATGGAATTTACATCATATACATAATCCCATAGAATACATCATGCATACTTAATCACCTCAT
1098342 ATG
66 ATG
* *
1098345 CTATATAGAATTTACATCATATACATAA
1 GTATATGGAATTTACATCATATACATAA
1098373 CCTTATGGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 81 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (68 bp):
GTATATGGAATTTACATCATATACATAATCCCATAGAATACATCATGCATACTTAATCACCTCAT
ATG
Found at i:1098378 original size:68 final size:68
Alignment explanation
Indices: 1098250--1098378 Score: 204
Period size: 68 Copynumber: 1.9 Consensus size: 68
1098240 CATGGAATTT
* * * *
1098250 ATCATGCATACTTAATCACCTCGTATGGTATATGGAATTTACATCATATACACAATCTTATAGTA
1 ATCATGCATACTTAATCACCTCATATGCTATATAGAATTTACATCATATACACAACCTTATAGTA
1098315 TAC
66 TAC
* *
1098318 ATCATGCATACTTAATCATCTCATATGCTATATAGAATTTACATCATATACATAACCTTAT
1 ATCATGCATACTTAATCACCTCATATGCTATATAGAATTTACATCATATACACAACCTTAT
1098379 GGAATTAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 55 1.00
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (68 bp):
ATCATGCATACTTAATCACCTCATATGCTATATAGAATTTACATCATATACACAACCTTATAGTA
TAC
Found at i:1105666 original size:13 final size:12
Alignment explanation
Indices: 1105648--1105680 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
1105638 TTAAGTTACA
1105648 ATTTATTTTTTT
1 ATTTATTTTTTT
1105660 GATTTATTTTTTT
1 -ATTTATTTTTTT
1105673 A-TTATTTT
1 ATTTATTTT
1105681 AATTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.35
12 1 0.05
13 12 0.60
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (12 bp):
ATTTATTTTTTT
Found at i:1105673 original size:21 final size:21
Alignment explanation
Indices: 1105649--1105691 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1105639 TAAGTTACAA
* * *
1105649 TTTATTTTTTTGATTTATTTT
1 TTTATTATTTTAATTAATTTT
1105670 TTTATTATTTTAATTAATTTT
1 TTTATTATTTTAATTAATTTT
1105691 T
1 T
1105692 GTTTCTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTATTATTTTAATTAATTTT
Found at i:1106220 original size:28 final size:28
Alignment explanation
Indices: 1106188--1106244 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 28
1106178 AAGTAAGAAA
1106188 GAAATTC-AGAAGAAAAACGACATTAGTG
1 GAAATTCGA-AAGAAAAACGACATTAGTG
1106216 GAAATTCGAAAGAAAAACGACATTAGTG
1 GAAATTCGAAAGAAAAACGACATTAGTG
1106244 G
1 G
1106245 GATCTGCGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 27 0.96
29 1 0.04
ACGTcount: A:0.49, C:0.11, G:0.23, T:0.18
Consensus pattern (28 bp):
GAAATTCGAAAGAAAAACGACATTAGTG
Found at i:1106924 original size:21 final size:20
Alignment explanation
Indices: 1106864--1106932 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
1106854 CAAGAAGAAA
* *
1106864 AGAGAAAGTAGAAGAAAGAAAG
1 AGAGAAAG--GAAGAAAGGAGG
1106886 ATGAGAAAGGAAGAAAGGAAGG
1 A-GAGAAAGGAAGAAAGG-AGG
*
1106908 AGAGAAAGGGAGAAAGGAGG
1 AGAGAAAGGAAGAAAGGAGG
1106928 A-AGAA
1 AGAGAA
1106933 GAAAAAGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.10
20 4 0.10
21 23 0.55
22 4 0.10
23 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (20 bp):
AGAGAAAGGAAGAAAGGAGG
Found at i:1112308 original size:21 final size:21
Alignment explanation
Indices: 1112282--1112324 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1112272 AAGAAGAGAA
1112282 ATAAACTGTGTTGTACAAAGG
1 ATAAACTGTGTTGTACAAAGG
1112303 ATAAACTGTGTTGTACAAAGG
1 ATAAACTGTGTTGTACAAAGG
1112324 A
1 A
1112325 AAGTATACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (21 bp):
ATAAACTGTGTTGTACAAAGG
Found at i:1114137 original size:30 final size:30
Alignment explanation
Indices: 1114071--1114152 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 30
1114061 ATCTTGTTGC
*
1114071 TTTAATTTTTAATTAAATTAGATTTAGATA
1 TTTAATTTTTAATTAAATTAGATTCAGATA
** * *
1114101 AGTAATTTTTAGTTTAATTAGAATTCAGAT-
1 TTTAATTTTTAATTAAATTAG-ATTCAGATA
*
1114131 TTTAATTATTTGAATAAAATTA
1 TTTAATT-TTT-AATTAAATTA
1114153 AATTATTCTA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
30 22 0.56
31 10 0.26
32 7 0.18
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (30 bp):
TTTAATTTTTAATTAAATTAGATTCAGATA
Found at i:1114663 original size:11 final size:11
Alignment explanation
Indices: 1114647--1114671 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1114637 GGTCAAAGTG
1114647 CTCAATCTTAC
1 CTCAATCTTAC
1114658 CTCAATCTTAC
1 CTCAATCTTAC
1114669 CTC
1 CTC
1114672 TAAAAGCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36
Consensus pattern (11 bp):
CTCAATCTTAC
Found at i:1116276 original size:73 final size:73
Alignment explanation
Indices: 1116166--1116306 Score: 178
Period size: 73 Copynumber: 1.9 Consensus size: 73
1116156 AACATTGTTC
* *
1116166 CTTATTCAATTAAGTTGTTTACGTCTCTAAACCCAGTTTCTGGCAGT-AGACTCTTAGTCGACTA
1 CTTAGTCAATTAAGTTGTTTACGTCTCTAAACCCAGTTTCTGGCAATAAG-CTCTTAGTCGACTA
1116230 ACAAAACTT
65 ACAAAACTT
* * * * * *
1116239 CTTAGTCAATTAAGTTGTTT-CTGTTTCTGAACTCAGTTTTTGGCAATAAGCTTTTAGTTGACTA
1 CTTAGTCAATTAAGTTGTTTAC-GTCTCTAAACCCAGTTTCTGGCAATAAGCTCTTAGTCGACTA
1116303 ACAA
65 ACAA
1116307 TGTCACTTGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
72 1 0.02
73 55 0.95
74 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (73 bp):
CTTAGTCAATTAAGTTGTTTACGTCTCTAAACCCAGTTTCTGGCAATAAGCTCTTAGTCGACTAA
CAAAACTT
Found at i:1121738 original size:15 final size:15
Alignment explanation
Indices: 1121720--1121749 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1121710 TCTAAAAGTT
*
1121720 TTCAAACTCATCTCC
1 TTCAAACTCACCTCC
1121735 TTCAAACTCACCTCC
1 TTCAAACTCACCTCC
1121750 ATGATCACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.43, G:0.00, T:0.30
Consensus pattern (15 bp):
TTCAAACTCACCTCC
Found at i:1127760 original size:181 final size:181
Alignment explanation
Indices: 1127373--1129032 Score: 1269
Period size: 182 Copynumber: 9.3 Consensus size: 181
1127363 GGGTTGTGAT
* * *
1127373 AGATTATAAATGCATTAATACATCATTTAAAGTGAGTAACAAAGCTATTAAC-A-G-CATGACTA
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCT-TT--CGATGACATGATTA
* * * * ** *
1127435 ACTTAAAATGGTCTTCTCTT-TGCAATGAATAGCTTCCACTTCACGTTTCGTAATGCAAACAACT
63 ACTTAAAATAGTCTTTTCTTGT-CAATGGATAGCATCCACTTCACGTTTCCCAATGCAAACATC-
* ** *
1127499 AATTACGATAGGTTTTAACCATAAAGTCCAAAGATTTTGATTTATAATCATTTATG
126 AATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * *
1127555 AGATTATAAATGAATTAGTATATCATTTAAAGTGAGTAACAAAGCTTTCAATCACATGATTAACT
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTTCGATGACATGATTAACT
* * *
1127620 CAAAATGGTCTTTTCTTGTCAAGGGATAGCATCCACTTCACGTTTCCCAATGCAAACATCAATTA
66 TAAAATAGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCCCAATGCAAACATCAATTA
* * * * *
1127685 TGATAGGTTTCAACCATAAAGCCCAAAGATTTTAATTTATAACCGTTTATA
131 TGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * *
1127736 AGATTATAAATGAATTAATATATCATTCAAA-TCGAGTAACAAAGCCTTCGATGGCATGATTAAC
1 AGATTATAAATGAATTAATATATCATTTAAAGT-GAGTAACAAAGCTTTCGATGACATGATTAAC
* * * * *
1127800 TTAAAATAGTC-TTTCTCGTCATTGGACA-CGATCCACTTCACAATTT-CCAATTCAAACATTCA
65 TTAAAATAGTCTTTTCTTGTCAATGGATAGC-ATCCACTTCAC-GTTTCCCAATGCAAACA-TCA
* * * * *
1127862 ATTTTGATAGGTTTTAACCA-ACAG-CAACAAAGATTTCAATTTTTAATAATTTACA
127 ATTATGATAGGTTTTAACCATAAAGTC--CAAAGATTTCAATTTATAATCATTTATA
* * * * * * * *
1127917 AGAATATGAATGAATTAATATAGCATTTTAAGTGAGTAGCAAAGGTTTCGAAGGCATGATTAACT
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTTCGATGACATGATTAACT
* * * * * * *
1127982 TAAAACT-GTCTTTTCTTATCAATGGATAGCATACACTTTATGTTTTCTAATACAAACATCCAAT
66 TAAAA-TAGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCCCAATGCAAACAT-CAAT
* * * *
1128046 TATAATAGATTCTAACCATAAAGTCCAAAAATTTCAATTTAT-A--ATTTAT-
129 TATGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * * * **
1128095 AG--TGT---T--A-TAA-AT-T-A-TTATAA-TG-G----ATAGCTTTTGATGGCACAATTAAC
1 AGATTATAAATGAATTAATATATCATTTA-AAGTGAGTAACAAAGCTTTCGATGACATGATTAAC
* *** * * * *
1128142 TGAAAATAGTCTTTTCTAT-TCAATGGATATTGTCCA-GTCTACATTT-CTAATTCAAACATGCA
65 TTAAAATAGTCTTTTCT-TGTCAATGGATAGCATCCACTTC-ACGTTTCCCAATGCAAACAT-CA
* * * *
1128204 ATTATGATAAGTTTGAACCATAAAGTCC-AA-ATTACTCAATTCATAATCATTAATA
127 ATTATGATAGGTTTTAACCATAAAGTCCAAAGATT--TCAATTTATAATCATTTATA
* * * * * *
1128259 AAATTATTAATGAATTAATATATCATTTAAAGCGTA-TATCAAAGCTTTTGATGACATGATTAAT
1 AGATTATAAATGAATTAATATATCATTTAAAGTG-AGTAACAAAGCTTTCGATGACATGATTAAC
* * * *
1128323 TTAAAAT-GATCTTTTCTTG-CTAATTGATAGCATCCACTTCACGTTTTCGAATGCAAACATTGA
65 TTAAAATAG-TCTTTTCTTGTC-AATGGATAGCATCCACTTCACGTTTCCCAATGCAAACA-TCA
* * * * ** * * **
1128386 TTTATAATAGGCTTTGATTATAAAGTTCAAAGTTTTTTATTTATAATCATTTATA
127 ATTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * * * *
1128441 AGATTATAAATGAATTAATACATCATTTAAAGTGAGTAACAAAGCTAGT-AATGGCATGATTAGC
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCT-TTCGATGACATGATTAAC
* * * * * * ** *
1128505 TTAAAATGGTATTCTT-TCG-CAATGAATAGCATCCACTTCACATTTTCTGATGTAAACATCCAA
65 TTAAAATAGTCTT-TTCTTGTCAATGGATAGCATCCACTTCACGTTTCCCAATGCAAACAT-CAA
** * * *
1128568 TTACAATAGGTTTTAACCATAAAGTCCAAAGACTTCATTTTATAATCATGTATA
128 TTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * * ** * * *
1128622 AGATTGTAAATAAATTAATATATCCTTTAAAGCAAGTAACAAAACTTTTGATCG-GATGATTAAC
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTTCGAT-GACATGATTAAC
* * * * * * *
1128686 TTAAAATAGTCTTATCTTTTTAAAGGATAGCA-CACACTTCATGTTTCCCAATACAAATATCCAA
65 TTAAAATAGTCTTTTCTTGTCAATGGATAGCATC-CACTTCACGTTTCCCAATGCAAACAT-CAA
* * *
1128750 TTATTATAGGTTTTAACCATAAAGTCTAAAGATTTCAATCTATAATCATTTATA
128 TTATGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
* * * * * * * *
1128804 AGATTATAAATGAATTAATATATCATTCAAAGTTAGTAACAAAGCCTTCGATGTCTTAATTACCA
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTTCGATGACATGATTAACT
* * * * * *
1128869 TAAAATAGTATTTTCTTGTCAATAGATACCATCCATTTCCCAC-ATT-CCAATTCAAACATCAAA
66 TAAAATAGTCTTTTCTTGTCAATGGATAGCATCCACTT--CACGTTTCCCAATGCAAACATC-AA
* * *** * * *
1128932 TTTTGATAGGTTTTAACTA-ACAACAACAAAGATTTCTATTTATAATAATTTTTA
128 TTATGATAGGTTTTAACCATA-AAGTCCAAAGATTTCAATTTATAATCATTTATA
* *
1128986 AGATTATAAATGAATTAATATAACATTT-AAGCGAGTAACAAAGCTTT
1 AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTT
1129033 GTCATGACCC
Statistics
Matches: 1170, Mismatches: 237, Indels: 143
0.75 0.15 0.09
Matches are distributed among these distances:
158 3 0.00
159 2 0.00
160 47 0.04
161 50 0.04
162 1 0.00
163 5 0.00
164 1 0.00
165 1 0.00
166 6 0.01
167 3 0.00
169 3 0.00
170 3 0.00
171 2 0.00
172 3 0.00
173 3 0.00
174 1 0.00
175 3 0.00
176 6 0.01
178 2 0.00
179 8 0.01
180 46 0.04
181 435 0.37
182 516 0.44
183 15 0.01
184 5 0.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (181 bp):
AGATTATAAATGAATTAATATATCATTTAAAGTGAGTAACAAAGCTTTCGATGACATGATTAACT
TAAAATAGTCTTTTCTTGTCAATGGATAGCATCCACTTCACGTTTCCCAATGCAAACATCAATTA
TGATAGGTTTTAACCATAAAGTCCAAAGATTTCAATTTATAATCATTTATA
Found at i:1131905 original size:35 final size:35
Alignment explanation
Indices: 1131859--1132031 Score: 168
Period size: 35 Copynumber: 4.9 Consensus size: 35
1131849 TCCTTAAGAA
***
1131859 GCCCAATTAACTTAATTGTTTAATTTAATCAATTAG
1 GCCCAA-TAACTTAATTAAATAATTTAATCAATTAG
* * *
1131895 GCCCAATAACTTAATTACATAATTCAATTAATTAG
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * * *
1131930 GCTCAATAACTTAATGAAACAATTTGATCAATTA-
1 GCCCAATAACTTAATTAAATAATTTAATCAATTAG
* * *
1131964 ACCCAATAACTTGATTAAACAAATTTAATCAATTAG
1 GCCCAATAACTTAATTAAA-TAATTTAATCAATTAG
* * *
1132000 GCCAAATAACTTGATTAAACAATTTTAATCAA
1 GCCCAATAACTTAATTAAATAA-TTTAATCAA
1132032 GTGCTTAAGA
Statistics
Matches: 113, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
34 15 0.13
35 66 0.58
36 32 0.28
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (35 bp):
GCCCAATAACTTAATTAAATAATTTAATCAATTAG
Found at i:1132329 original size:15 final size:15
Alignment explanation
Indices: 1132311--1132339 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1132301 ATGGTTTGAC
1132311 TCAACCTTTCAGTGA
1 TCAACCTTTCAGTGA
1132326 TCAACCTTTCAGTG
1 TCAACCTTTCAGTG
1132340 TAATCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (15 bp):
TCAACCTTTCAGTGA
Found at i:1142267 original size:171 final size:170
Alignment explanation
Indices: 1141312--1147444 Score: 3243
Period size: 170 Copynumber: 36.2 Consensus size: 170
1141302 AACATGAGTG
* * ** *
1141312 AAAAAAATTCAA-TCTAAAAACATTTATAAGATTATAAAACCTTTTAAAATGAGTAACTTGGCTT
1 AAAAAAATTCAACT-TAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * *
1141376 TTGAAA-GTATGAGTGATTATAAATGGACTTTTCTAGTCAATGGATGGGC-TTCACTTAACATTA
64 TT-AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGAT-GGCTTTCACTTCACATTT
* * * * *
1141439 CCCTAGGTAAACATCCATTTATGA-CATGTTTTAACCTAAAATGA
127 CCCAAGGCAAACATCCAATTATGATC-TGTTTTAACCAAAAATAA
* ** * * *
1141483 AAAAAAA-TCAATTTAAAGGC-TTTATAAAGTTATAAAAACCACTTAAAACGAGTAACAAGGCTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTAT-AAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * *
1141546 TCAAAGGCATAAGTGATTTTAAATGGACTTTTCTTGTCAATGGATGGCCTTCACTTCACA-TTCC
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* * * * *
1141610 CTGAGGCAAACATCCATTTATGATCTGCTTTAACCTAAAATGA
129 C-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* ** * * * * *
1141653 AAAAAAA-TCAATTTAAAGGCACTTATAAAGTTATAAAACCACTTAAAACTAGTAACAAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
** * * * ** *
1141717 CGAAGTCATGAGTGACTATAAAT-AGACTTTTTTTGTCAATCGATGGCTTTCACTTCATGTTTTC
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* ** * *
1141781 TAAGAAAAACATCCAATTATAATCTCTTTTAACCAAAAAT-A
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * *
1141822 AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGTGAGTAGCTAGTCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * ** * *
1141887 TGAAGGCATGAGTGATTATACATGGGC-TTTCTTGTCAACGGATGGCTTTCACTTTA-ATTTTCC
65 TAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACA-TTTCC
* * * ** * * *
1141950 CAAGGTACACATCCAATTATGATAT-ACTTAACC-TATATTA
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * * **
1141990 AAAAAAATTCAATTTAAAAGCGTTGATAAAGTTATAAGACCACTTGAAGCGAGTAAGAAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * ** *
1142055 CAAAGGCATAAGTGACTATAAAT-AGATTTTTCTTGTCAATGGATGGCTTTGGCTTTACATTTCC
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
*
1142119 CAAGGCAAACATCCAATTATGATATGTTTTAACCAAAAATAA
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * *
1142161 AAAAAAATTCAACTTAAAATCATTTATGAAATTATAAAATCTTTTAAAGCAAGCAACTAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * *
1142226 TAAAGGCATGAGTGATTATAAATGAACTTTTCATGTCAATGGATGGCTTTCACTTCATATTTCCT
65 TAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCC
* * * * * * *
1142291 GAGGCAAACTTCTAATTATGATATGTTTGAA-CATGAAATGA
130 AAGGCAAACATCCAATTATGATCTGTTTTAACCA-AAAATAA
* * ** * * *
1142332 AAAAAAA-T--AGTATAAAATCATTCATAAAGGCAT-----CACTTAAAGCAAGTAACAAGGCTT
1 AAAAAAATTCAACT-TAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * * *
1142389 TTGAAGGCATGAGTGACTACAAAT-ACACTTTTCCTATCAATGGATTGCTTTCGCTTCACGTTTC
64 TTAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
** * * * *
1142453 CCTTGGTAAACATCCAATTTTGATCTGTTTTAACTAAAACTGAA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-AA
* * * * * * * * * *
1142497 AAAAACATTTTAACATAAAATCATTTCTAAGATTATAAAACAATTTAAAGGGAGAAACAAAGATT
1 AAAAA-AATTCAACTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * * * **
1142562 TCAAACGCATAAGTGACTATAAATGGACCTTT-TTATCAATGGATGGCTTGT-GCTTCATGTTTC
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTT-TCACTTCACATTTC
** * * ** * *
1142625 TAAAGGAAAACATTCAATTATGATCTACTTTAACCAAAATTTTTA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAA--ATAA
* * ** * *
1142670 AAAAAAATTGAACTTAAAATCACTTATAAGATTATAAATTCATTTAAAACGAGTAATTAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * * *
1142735 CAAAGCCATGAGTGACTATAAAT-AGACTTTTCTTATCAA-GAGATAGTTTTCACTTCATGA-TT
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATG-GATGGCTTTCACTTCA-CATTT
** * * **
1142797 CTTAAGGTAAACATCCAATTATAATAAGTTTTAA-C-----T-A
127 CCCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * * *
1142834 AAAACAATTTATCTTAAAATCTTTTATGACATTATAAAATCATATAAAGC-AGGTAACTAGCCTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGA-GTAACTAGGCTT
* ** * * * * * ** * **
1142898 TCAAAGGCATGAGCAATTATCAATGGACTTTTCTTGTTAATGGAAGGCTCGCACTTCACGTTTAA
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* * * *
1142963 CAAGGCAAACTTTCAATAATGATCT-TTTTAACCTAAAAT-A
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * ** *
1143003 GAAAAAATTCATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGTGA-TAAAAAAAGCTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGT-AACTAGGCTT
* * * * * * * *
1143067 TCAAAGGCATGAGTCACTATAAATAAACTTTTCATATCAATGGATGGCTTTCGCTTCATATTTCT
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* ** * * * ** * *
1143132 CGATACAAGCATCAAATTATCATCTAATTTAACAAAAAAT-G
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * * *
1143173 ATAAAAATTAAATTTAAAATTATTTATAAAGTTAT-AAACCACTTAAAGTGAGTAACAAGGTTTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * * * *
1143237 TGAAGGCATGAGTGAATATAAAT-AGACTTTTCTTATCAGTGGATGACTTTCGCTTCAGCCTTT-
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCA-CATTTC
* * * *
1143300 CCAAGGCAACCATCCAATTATGGTCTATTTTAACTAAAACA-AA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAA-ATAA
* * * * * * * *
1143343 AAAGAACTTTAACTTAAAATCATTTGTGAGAA-TAT-AAACTATTTAAAGGGAGAAACTAGACTT
1 AAAAAAATTCAACTTAAAATCATTTAT-A-AATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * * ** *
1143406 TGAAAGGTATGAGTGATTATAAATGGAC-TTTCTTGTCAATGGATGACTTTCACTTTATGTTTCT
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
** * * ** *
1143470 TGAGGCAAACATCCAATTATGATCTGTTTTCATCTTAAATGA
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * ** ** * **
1143512 ATAACAATCCAA-TTCACAATCATTTCTAAGGTTATAAAACCACGTAAAGAAAGTAACAATACTT
1 AAAAAAATTCAACTT-AAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * ** **
1143576 TTGAAA-GCATAAGTGACTATAAATGAAATTTTCTTGTCAATGGATGGCTTTTGCTTTTCA-TTC
64 TT-AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
* * * *
1143639 CCTAAGGCAAATATCCAATTATGATCTATTTTAGCCAAAACTGAA
128 CC-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-AA
* * * * * * * *
1143684 AAACAAACTCTACCTAAAATCATTTATAAGATTATGAAACTATTTGAAGTGAGTAA-TAAGGCTT
1 AAAAAAATTCAACTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACT-AGGCTT
* * * *
1143748 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAG-CAAGGGATGGCTTTCACTTCACCTTTC
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTT-GTCAATGGATGGCTTTCACTTCACATTTC
** * * * *
1143812 TTAAGGCAAATATCCAATTATTATTTGTTTTAACCAAAAAT-G
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * *
1143854 AAAAAACTTTAACTTAAAATTATTTTTGAGATTAT-AAACCATTTAAAGTGAGTAACTAGGTTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * * ** **
1143918 TGAAGGCATGAATGATTATAAATAAACTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCC
65 TAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCC
* * * * * * *** *
1143983 AATGTAAACTTCTAATGATGATCTATTTTAA-CTTTAATGA
130 AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * ** ** *
1144023 AAAATAATTCAA-TTCACAATCATTTCTAAGGTTATAAAAGTACATAATA---A-TAA--A-ACT
1 AAAAAAATTCAACTT-AAAATCATTTATAA-ATTATAAAACCATTTAA-AGCGAGTAACTAGGCT
** * * * *** *
1144080 TTCGAAGGCATGAGTAACCATAAATACAACTTTT-TTGTCAATGGATGGCTTTTGTTTCAC-GTT
63 TTTAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTT
** * *
1144143 CCTTGAGG--------C-A-TATGATTTGTTTTAACTAAAAATAAGA
127 CC-CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-A-A
* * * * *
1144180 AAAAAAACTCTACCTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTT
1 AAAAAAATTCAACTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * ** **
1144244 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAGGGATGGTTTTTGCTTCATGTTTCC
65 T-AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* * * *
1144309 CAAAGTAAATATCTAATTATGATCTGTTTTAACC-----T--
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * ** * *
1144344 -AAAAAATTAAATTTAAAGTCATTTATAAAGTTATACAACAACTTAAATAGACTAACAAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * *
1144408 TAAAGGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGACGGCTTTTACTTCACATTTTCC
65 TAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCC
* * * * * *
1144473 AAGGCACACATCTAATTATAAGCTGTTGTAACCTAAAATAA
130 AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* ** * *
1144514 AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACTGTTTAAAGTGGGTAACTTA-GCTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAAC-TAGGCTT
* * * * * * * *
1144578 TTGAAGGCATGAGTGATTGTAAATGGACTTTTTTTATGAATGGAAGGCTTTCA-TT-ACATGTT-
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACAT-TTC
* * *
1144640 TCATGAGTCAAACATCCAATTATGATCTATTTTAA-C-----T--
128 CCA--AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * *
1144677 AAAAAAATT-AACTTTAAAAT-ATTTATCATATTATAAAATCGTTTAAAGCGACTAACTAGGTTT
1 AAAAAAATTCAAC-TTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * *
1144740 TTGAAGGCATAAGTGATTATAAAT-AGACTTTT-TTCATCAATGGATGGCTTTCCCTTCACATTC
64 TTAAAGGCATGAGTGACTATAAATGA-ACTTTTCTT-GTCAATGGATGGCTTTCACTTCACATTT
* * * *
1144803 CCCGAGGCAAACATCCAATTATCATCTATTTTAACCTAAAATAA
127 CCCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * *
1144847 TAAAAAATTCAATTTAAAGTCATTTATAAAATTATAAAACCACTT-AAG-GAGCCTAA-TAAGGC
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAG--TAACT-AGGC
* ** * * * * * * * **
1144909 TTTTGAAGTAATGAGTAAATATAAATGAACTTTTCTTATTAATAGATTGCTTTC-GTCTCATGTT
62 TTTTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACT-TCACATT
** * * *
1144973 TCTTAAGACAAACATCCAATTATCAGT-TGTTTTAACCAAGAATGCAA
126 TCCCAAGGCAAACATCCAATTATGA-TCTGTTTTAACCAAAAAT--AA
* * * * * * * *
1145020 AAAAAAA-TCATCTTAAAATAATTTATGAAGTTATAAAATCACTAAAATCGAATAA-TAAGGCTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACT-AGGCTT
* * * * * * * * ** ** * ** *
1145083 TCAAAAGCATGAGTGACTATCAATGGAGTTTCCTTGTTAAAGGACAGCTTTTGCTTTATGTTTCT
64 TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* * * * *
1145148 CAAGGAAAATATCCAATTATGATATATTTTAACTAAAAAT--
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * *
1145188 AAAAAAATTCAACTTAAAATCATTTATGAGATTCTAAAACAATTTAAAGTGAGTAACTAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * * * * * *
1145253 TGATGACATGAGTGACTATAAATGAAATTTTCTTATCAAAGGATGGCTTTCACTTCATGA-TTAC
65 TAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCA-CATTTCC
* * * ** **
1145317 CAATAG-AAACATCAAATTATGGTCTAATTTAATGAAAAAT--
129 CAA-GGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * *
1145357 -AAAAAATTTAATTTAAAATCATTTATAAAGTTATAAAATCACTTAAAGGGAGTAA-TAACGCTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACT-AGGCTT
** ** * * * * ** *
1145420 TCGAAGATATGAGTGGCTATAAAT-AGACTTTTCTTATCAATAGATGGCTTCCACTTCATGTTTG
64 TTAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
** * * * * ** *
1145484 CCAAGTAAAATATCTAATTATGTTATGGGTTAACAAAAAATAA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * **
1145527 AAAAAAA-TCAA-TTCAAAATAATTTATGAGACTAT-AAACCATTTGGAGCGAGTAACTAGAG-T
1 AAAAAAATTCAACTT-AAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAG-GCT
** * * * *
1145588 TACGAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACACTT
63 T-TTAAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTT
* * ** **
1145652 CCTAAGGCAAACATCCAATTATGATGTGTTTTAAATAAAAATGT
127 CCCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * *
1145696 AAAAAAATTCAACTTAAAATCATTTATGAGATTAT-AAACCATTTAAAGCGATTAATTCA-CCTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACT-AGGCTT
* * * *
1145759 TTGAAGACAT-AGGTGATTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTT
64 TTAAAGGCATGA-GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
* * * * * **
1145823 CC-ATGAAAAAATCCAATTATGATATGTTTTAAGCTCAAATAA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * ** * * * *
1145865 AAAAAAGAGTTGAA-TTCACAATCATTTCTAAGGTTATAAAACCGCGTGAAA-CAAGCAACAAGG
1 AAAAAA-A-TTCAACTT-AAAATCATTTATAA-ATTATAAAACC-ATTTAAAGCGAGTAACTAGG
* * * * * **
1145928 CTTTTAAAGGTATGAGTGACTATAAATAGAA-TTTTCTTGTTAATGGATGGTTTTTACTTTATGT
61 CTTTTAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCACTTCACAT
** * * *
1145992 TTCCTTAGCCAAACATCCAATTATGATTTG-TTTAACTAAAAATGAA
125 TTCCCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-AA
** * * * * *** *
1146038 AAAAAACCTAAACTTAAAATTACTAATGGGGTTAT-AAACCATTTAAAGCTAGTAACTAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
** ** * * * * * * * ** ** **
1146102 CGAAGATATAAATGATTATAAAT-AGACTTTTCCTATCAAAGGATGTCTTTTGCTTCATGTTTGT
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
** * * * * ** *
1146166 TTAGTCAAGCATCCAATTGTGATTTGTTTTAACCTTAAATTA
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * *
1146208 AAAAGAATTCAA-TTAATAATCATTTCTAAGGTTATAAAACCATGTAAAGCAAGTAACAAGGCTT
1 AAAAAAATTCAACTTAA-AATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* ** * * * * *
1146272 TTAAAGGCATGACTGA-TATAAATAGAA-TTTTCTTACCAATGGATGGTTTTTAATTAACGTTTC
64 TTAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
* * * * *
1146335 TCAAGGAAAACATCAAATTATAATCTGTTTTAACCAAAAGTAA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * *
1146378 AAAAGAACTCAA-TCTAAAACCATTTATAAGATTATAAAATCGTTTAAAGCCAATAACTAGGCTT
1 AAAAAAATTCAACT-TAAAATCATTTATAA-ATTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * * * * * * * *
1146442 TAAAAAGAATGATTGACCATAAAT-AGACTTTTCTCGTTAAGGGATGGATTTCACTTCACGTTTC
64 TTAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
* * * * **
1146506 CCAGGGAAAACATCTAATTATGATCTGTTCTAATTAAAAATAA
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
** * * ** *
1146549 AAAGGAATTCAACTTAAACTCATTTATGAGATTATAAAACCATTTAAAATGAGTAATTAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * *
1146614 CGAAA-GCATGAGTGATTATAAAT-ATACTTTTCTT-ACGAATGGATAGCTTTCACTTCATC-TT
65 -TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTC-AATGGATGGCTTTCACTTCA-CATT
** * * ** * *
1146675 TCTTAAGGCAAACATCCAATTATTATCTATTTTAACTTAAACT-G
126 TCCCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * ** * * *
1146719 AAAAAAATCCAA-TTGAAAATCTTTTCTAAAGTTATACAACCACTTAAATAGACTAGCAAGGCTT
1 AAAAAAATTCAACTT-AAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTT
* * * *** * ** *
1146783 TTGAAA-GAATGAGTGACTATAAATAAACTTTTCTTGTCAATGGATCGCTTTTGTTTTATGTTTT
64 TT-AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC
* * *
1146847 CCAAGGCAAACATCCAACTATGATCTATTTTAACTAAAAAT-A
128 CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * ** *
1146889 AAAAAAA-TCAACTTAAAAACATTTGTGAGATTATAAAACCATTTAAAATGAGTAACTAAGCTTT
1 AAAAAAATTCAACTTAAAATCATTTAT-AAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
** * * * * * *
1146953 CGAAGGCATGAATGATTATAAAT-AGACTTTTTTTATCAATGAATGGCTTT-TC-TC-CTATGTT
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCAC-AT-TT
* * * *** * * *
1147014 CTCTAAGGCCAATATCCAATTGCCATTTGTTTTAACCTAAAATGA
127 C-CCAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
* * * * * * * *
1147059 TAAAAAATTCAATTTAAAGTCATTTATAAAGTTATAAAACTACTTAAGGTGAGTAACAAGGCTTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* ** * * * * ** *
1147124 TGAAGATATGAGTAAATATAAAT-AGACTTTTTTTATCAATGGATGGCTTTCACTTCATGTTTTC
65 TAAAGGCATGAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCC
* *
1147188 TAAGGCAAACATCCAATTATGATATGTTTTAACCAAAAATAAAGA
129 CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT--A-A
* * * * * * *
1147233 AAAAAAAATCATCTTAACATCATTTGTAAAGTTATAAAACCATTGAAAGCTAGTAACAAGG-TTT
1 AAAAAAATTCAACTTAAAATCATTTATAAA-TTATAAAACCATTTAAAGCGAGTAACTAGGCTTT
* * * *
1147297 TCAAAGGCATGAGTAACTATAAATGAAGTTTTCTTGTCATTGGATGGCTTTCACTT--TATGTTC
65 T-AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACAT-TTC
* * * * * *
1147360 CCTGAGGCAAACATCCATTTATGAACTATGTTAACCTAAAATGAA
128 CC-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-AA
* **
1147405 AATAAAAATTCAATTTAAAGGCATTTATAAAGTTATAAAA
1 AA-AAAAATTCAACTTAAAATCATTTATAAA-TTATAAAA
1147445 TCACATAAAA
Statistics
Matches: 4548, Mismatches: 1167, Indels: 492
0.73 0.19 0.08
Matches are distributed among these distances:
154 12 0.00
155 4 0.00
156 1 0.00
157 35 0.01
158 1 0.00
159 1 0.00
160 3 0.00
161 4 0.00
162 117 0.03
163 201 0.04
164 271 0.06
165 19 0.00
166 1 0.00
167 16 0.00
168 259 0.06
169 932 0.20
170 1018 0.22
171 861 0.19
172 462 0.10
173 201 0.04
174 128 0.03
175 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (170 bp):
AAAAAAATTCAACTTAAAATCATTTATAAATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTT
AAAGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCCA
AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAA
Found at i:1144370 original size:163 final size:163
Alignment explanation
Indices: 1144194--1147400 Score: 1015
Period size: 171 Copynumber: 18.9 Consensus size: 163
1144184 AAACTCTACC
1144194 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGGTTTTCGAAGGCATGAGTG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGGTTTT-GAAGGCATGAGTG
* * * ** * * *
1144259 ACTATAAATGGACTTTTCTTGTCAAGGGATGGTTTTTGCTTCATGTTTCCCAAAGTAAATATCTA
65 ACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCCA
*
1144324 ATTATGATCTGTTTTAACCT-AAAAAATTAAATT
130 ATTATGATCTATTTTAACCTAAAAAAATTAAATT
* * * * * *
1144357 TAAAGTCATTTATAA-AGTTATACAA-CAACTTAAA-TAGACTAACAAGGCTTTTAAAGGCATGA
1 TAAAATCATTTATAAGA-TTATAAAATC-ATTTAAAGT-GAGTAACTAGG-TTTTGAAGGCATGA
* * * * ** * * *
1144419 GTGACTATAAATGGACTTTTATTGTCAATGGACGGCTTTTACTTCACATTTTCCAAGGCACACAT
62 GTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACAT
* * * * * * *
1144484 CTAATTATAAGCTGTTGTAACCTAAAATAAAAAAAAATTCAACT
127 CCAATTATGATCTATTTTAACC-----T--AAAAAAATTAAATT
* * * *
1144528 TAAAATCATTTATGAGATTATAAAA-CTGTTTAAAGTGGGTAACTTAGCTTTTGAAGGCATGAGT
1 TAAAATCATTTATAAGATTATAAAATC-ATTTAAAGTGAGTAAC-TAGGTTTTGAAGGCATGAGT
* * * * * *
1144592 GATTGTAAATGGACTTTTTTTATGAATGGAAGGCTTTCA-TTACATGTTT--CATGAGTCAAACA
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTT-CATGTTTCCCA-AAG-CAAACA
*
1144654 TCCAATTATGATCTATTTTAA-CTAAAAAAATTAACTT
126 TCCAATTATGATCTATTTTAACCTAAAAAAATTAAATT
* * * * * *
1144691 TAAAAT-ATTTATCATATTATAAAATCGTTTAAAGCGACTAACTAGGTTTTTGAAGGCATAAGTG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGTG
* * * ** * * *
1144755 ATTATAAATAGACTTTT-TTCATCAATGGATGGCTTTCCCTTCACATTCCCCGAGGCAAACATCC
65 ACTATAAATGGACTTTTCTT-ATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCC
* *
1144819 AATTATCATCTATTTTAACCTAAAATAATAAAAAATTCAATT
129 AATTATGATCTATTTTAACC-----T-A-AAAAAATTAAATT
* * * * **
1144861 TAAAGTCATTTATAAAATTATAAAACCACTT-AAG-GAGCCTAA-TAAGGCTTTTGAAGTAATGA
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAG--TAACT-AGG-TTTTGAAGGCATGA
* * * * * * * **
1144923 GTAAATATAAATGAACTTTTCTTATTAATAGATTGCTTTC-GTCTCATGTTT-CTTAAGACAAAC
62 GTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACT-TCATGTTTCCCAAAG-CAAAC
* * * **
1144986 ATCCAATTATCAGT-TGTTTTAACCAAGAATGCAAAAAAAAATCATCT
125 ATCCAATTATGA-TCTATTTTAACC--TAA---AAAAATTAA--AT-T
* * * * ** *
1145033 TAAAATAATTTATGAAG-TTATAAAATCA-CTAAAATCGAATAA-TAAGGCTTTCAAAAGCATGA
1 TAAAATCATTTAT-AAGATTATAAAATCATTTAAAGT-GAGTAACT-AGG-TTTTGAAGGCATGA
* * * * * * ** ** * * * * *
1145095 GTGACTATCAATGGAGTTTCCTTGTTAAAGGACAGCTTTTGCTTTATGTTTCTCAAGGAAAATAT
62 GTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACAT
* * * *
1145160 CCAATTATGATATATTTTAACTAAAAATAAAAAAATTCAACT
127 CCAATTATGATCTATTTTAAC-----CTAAAAAAATTAAATT
* * * *
1145202 TAAAATCATTTATGAGATTCTAAAA-CAATTTAAAGTGAGTAACTAGGCTTTTGATGACATGAGT
1 TAAAATCATTTATAAGATTATAAAATC-ATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGT
* * * * *
1145266 GACTATAAATGAAATTTTCTTATCAAAGGATGGCTTTCACTTCATGATTACCAATAG-AAACATC
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAA-AGCAAACATC
* * ** *
1145330 AAATTATGGTCTAATTTAATGAA-AAATAAAAAATTTAATT
128 CAATTATGATCT-ATTT--T-AACCTA-AAAAAATTAAATT
* * * * **
1145370 TAAAATCATTTATAA-AGTTATAAAATCACTTAAAGGGAGTAA-TAACGCTTTCGAAGATATGAG
1 TAAAATCATTTATAAGA-TTATAAAATCATTTAAAGTGAGTAACT-A-GGTTTTGAAGGCATGAG
* * * * * * *
1145433 TGGCTATAAATAGACTTTTCTTATCAATAGATGGCTTCCACTTCATGTTTGCC-AAGTAAAATAT
63 TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAG-CAAACAT
* * * * *
1145497 CTAATTATG-T-TATGGGTTAACAAAAAATAAAAAAAAATCAATT
127 CCAATTATGATCTAT--TTTAAC-----CT-AAAAAAATTAAATT
* * * * * ** * ** *
1145540 CAAAATAATTTATGAGACTAT-AAACCATTTGGAGCGAGTAACTAGAGTTACGAAAGCATGAGTG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAG-GTTTTGAAGGCATGAGTG
* * * *** * *
1145604 ACTATAAATGGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACACTTCCTAAGGCAAACATCCA
65 ACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCCA
* * ** * *
1145669 ATTATGATGTGTTTTAAATAAAAATGTAAAAAAATTCAACT
130 ATTATGATCT-ATTT---T---AACCTAAAAAAATTAAATT
* * * * * ** *
1145710 TAAAATCATTTATGAGATTAT-AAACCATTTAAAGCGATTAATTCACCTTTTGAAGACAT-AGGT
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACT-AGGTTTTGAAGGCATGA-GT
* * * ** * * * *
1145773 GATTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTTCC-ATGAAAAAATCC
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCC
* * *
1145837 AATTATGATATGTTTTAAGCTCAAATAAAAAAAAGAGTTGAATT
129 AATTATGATCTATTTTAA-C-C---T--AAAAAA-A-TTAAATT
* * * * * ** * ** * * * *
1145881 CACAATCATTTCTAAGGTTATAAAACCGCGTGAAA-CAAGCAACAAGGCTTTTAAAGGTATGAGT
1 TAAAATCATTTATAAGATTATAAAATC-ATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGT
* * * * * * * **
1145945 GACTATAAATAGAATTTTCTTGTTAATGGATGGTTTTTACTTTATGTTT-CCTTAGCCAAACATC
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAG-CAAACATC
* * ** * *
1146009 CAATTATGATTTGTTTAACTAAAAATGAAAAAAAACCTAAACT
128 CAATTATGATCTATTT---T-AACCT--AAAAAAA-TTAAATT
* * * ** * * * ** * *
1146052 TAAAATTACTAATGGGGTTAT-AAACCATTTAAAGCT-AGTAACTAGGCTTTCGAAGATATAAAT
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAG-TGAGTAACTAGG-TTTTGAAGGCATGAGT
* * * * * ** **** *
1146115 GATTATAAATAGACTTTTCCTATCAAAGGATGTCTTTTGCTTCATGTTT-GTTTAGTCAAGCATC
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAG-CAAACATC
* * * *
1146179 CAATTGTGATTTGTTTTAACCTTAAATTAAAAAGAATTCAA-T
128 CAATTATGATCTATTTTAACC------TAAAAA-AATTAAATT
* * * * ** * * *
1146221 TAATAATCATTTCTAAGGTTATAAAACCATGTAAAGCAAGTAACAAGGCTTTTAAAGGCATGACT
1 TAA-AATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGT
* * * * * * * * * * * *
1146286 GA-TATAAATAGAATTTTCTTACCAATGGATGGTTTTTAATTAACGTTTCTCAAGGAAAACATCA
64 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCC
* * * * *
1146350 AATTATAATCTGTTTTAACCAAAAGTAAAAAAGAACTCAATC
129 AATTATGATCTATTTTAACC-----T-AAAAA-AATTAAATT
* * ** * ** * * *
1146392 TAAAACCATTTATAAGATTATAAAATCGTTTAAAGCCAATAACTAGGCTTTAAAAAGAATGATTG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGTG
* * ** * * * * ** * *
1146457 ACCATAAATAGACTTTTCTCGTTAAGGGATGGATTTCACTTCACGTTTCCCAGGGAAAACATCTA
65 ACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCCA
* ** * *
1146522 ATTATGATCTGTTCTAATTAAAAATAAAAAGGAATTCAACT
130 ATTATGATCT-AT-T--TT-AACCTAAAAA--AATTAAATT
* * * * * * *
1146563 TAAACTCATTTATGAGATTATAAAACCATTTAAAATGAGTAATTAGGCTTTCGAAAGCATGAGTG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAGTG
* ** * * ** *
1146628 ATTATAAATATACTTTTCTTA-CGAATGGATAGCTTTCACTTCATCTTTCTTAAGGCAAACATCC
65 ACTATAAATGGACTTTTCTTATC-AATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCC
* **
1146692 AATTATTATCTATTTTAACTTAAACTGAAAAAAATCCAATT
129 AATTATGATCTATTTTAAC-----CT-AAAAAAATTAAATT
* * * * * * * * * * *
1146733 GAAAATCTTTTCTAA-AGTTATACAACCACTTAAA-TAGACTAGCAAGGCTTTTGAAAGAATGAG
1 TAAAATCATTTATAAGA-TTATAAAATCATTTAAAGT-GAGTAACTAGG-TTTTGAAGGCATGAG
** * * *** * * *
1146796 TGACTATAAATAAACTTTTCTTGTCAATGGATCGCTTTTGTTTTATGTTTTCCAAGGCAAACATC
63 TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATC
* **
1146861 CAACTATGATCTATTTTAA-CTAAAAATAAAAAAAATCAACT
128 CAATTATGATCTATTTTAACCT-AAAA-AAATTAAAT----T
* * * * * * * *
1146902 TAAAAACATTTGTGAGATTATAAAACCATTTAAAATGAGTAACTAAGCTTTCGAAGGCATGAATG
1 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACT-AGGTTTTGAAGGCATGAGTG
* * * * * * * * * *
1146967 ATTATAAATAGACTTTTTTTATCAATGAATGGCTTT-TCTCCTATG-TTCTCTAAGGCCAATATC
65 ACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTC-ATGTTTC-CCAAAGCAAACATC
*** * * *
1147030 CAATTGCCATTTGTTTTAACCTAAAATGATAAAAAATTCAATT
128 CAATTATGATCTATTTTAACC-----T-A-AAAAAATTAAATT
* * * * **
1147073 TAAAGTCATTTATAA-AGTTATAAAA-CTACTTAAGGTGAGTAACAAGGCTTTTGAAGATATGAG
1 TAAAATCATTTATAAGA-TTATAAAATC-ATTTAAAGTGAGTAACTAGG-TTTTGAAGGCATGAG
* * * * * * *
1147136 TAAATATAAATAGACTTTTTTTATCAATGGATGGCTTTCACTTCATGTTTTCTAAGGCAAACATC
63 TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATC
* * **
1147201 CAATTATGATATGTTTTAACCAAAAATAAAGAAAAAAAAATCATCT
128 CAATTATGATCTATTTTAACC-----T-AA-AAAAATTAA--AT-T
* * * * * *
1147247 TAACATCATTTGTAA-AGTTATAAAACCATTGAAAGCT-AGTAACAAGGTTTTCAAAGGCATGAG
1 TAAAATCATTTATAAGA-TTATAAAATCATTTAAAG-TGAGTAACTAGGTTTT-GAAGGCATGAG
* * * * * * * *
1147310 TAACTATAAATGAAGTTTTCTTGTCATTGGATGGCTTTCACTTTATG-TTCCCTGAGGCAAACAT
63 TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCC-AAAGCAAACAT
* * *
1147374 CCATTTATGAACTATGTTAACCTAAAA
127 CCAATTATGATCTATTTTAACCTAAAA
1147401 TGAAAATAAA
Statistics
Matches: 2288, Mismatches: 577, Indels: 354
0.71 0.18 0.11
Matches are distributed among these distances:
161 5 0.00
162 110 0.05
163 139 0.06
164 13 0.01
165 11 0.00
166 8 0.00
167 14 0.01
168 131 0.06
169 335 0.15
170 544 0.24
171 602 0.26
172 194 0.08
173 44 0.02
174 114 0.05
175 14 0.01
176 8 0.00
177 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (163 bp):
TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGGTTTTGAAGGCATGAGTGA
CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCCCAAAGCAAACATCCAA
TTATGATCTATTTTAACCTAAAAAAATTAAATT
Found at i:1144746 original size:162 final size:164
Alignment explanation
Indices: 1144194--1144843 Score: 535
Period size: 163 Copynumber: 3.9 Consensus size: 164
1144184 AAACTCTACC
* *
1144194 TAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACTAGG-TTTTCGAAGGCATGAGT
1 TAAAATCATTTAT-AGATTATAAAATCGTTTAAAGTGACTAACTAGGCTTTT-GAAGGCATGAGT
* * * * * ** * * * *
1144258 GACTATAAATGGACTTTTCTTGTCAAGGGATGGTTTTTGC-TTCATGTTTCCCA-AAGTAAATAT
64 GACTATAAATGGACTTTTTTTATCAATGGATGG-CTTTCCATTCACATTTTCCAGAGGCAAACAT
* * *
1144321 CTAATTATGATCTGTTTTAACCT-AAAAAATTAAATT
128 CCAATTATGATCTATTTTAACCTAAAAAAATTAACTT
* * * * *
1144357 TAAAGTCATTTATAAAGTTATACAACAAC--TTAAA-TAGACTAACAAGGCTTTTAAAGGCATGA
1 TAAAATCATTTATAGA-TTATA-AA-ATCGTTTAAAGT-GACTAACTAGGCTTTTGAAGGCATGA
* * * * *
1144419 GTGACTATAAATGGACTTTTATTGTCAATGGACGGCTTT-TACTTCACATTTTCCA-AGGCACAC
62 GTGACTATAAATGGACTTTTTTTATCAATGGATGGCTTTCCA-TTCACATTTTCCAGAGGCAAAC
* * * * *
1144482 ATCTAATTATAAGCTGTTGTAACCTAAAATAAAAAAAAATTCAAC-T
126 ATCCAATTATGATCTATTTTAACC-----T--AAAAAAATT-AACTT
**
1144528 TAAAATCATTTATGAGATTATAAAA-CTGTTTAAAGTGGGTAACTTA-GCTTTTGAAGGCATGAG
1 TAAAATCATTTAT-AGATTATAAAATC-GTTTAAAGTGACTAAC-TAGGCTTTTGAAGGCATGAG
* * * * *
1144591 TGATTGTAAATGGACTTTTTTTATGAATGGAAGGCTTT-CATT-ACATGTTT-CATGAGTCAAAC
63 TGACTATAAATGGACTTTTTTTATCAATGGATGGCTTTCCATTCACAT-TTTCCA-GAGGCAAAC
1144653 ATCCAATTATGATCTATTTTAA-CTAAAAAAATTAACTT
126 ATCCAATTATGATCTATTTTAACCTAAAAAAATTAACTT
* * * *
1144691 TAAAAT-ATTTATCATATTATAAAATCGTTTAAAGCGACTAACTAGGTTTTTGAAGGCATAAGTG
1 TAAAATCATTTAT-AGATTATAAAATCGTTTAAAGTGACTAACTAGGCTTTTGAAGGCATGAGTG
* * * * * *
1144755 ATTATAAATAGACTTTTTTCATCAATGGATGGCTTTCCCTTCACA-TTCCCCGAGGCAAACATCC
65 ACTATAAATGGACTTTTTTTATCAATGGATGGCTTTCCATTCACATTTTCCAGAGGCAAACATCC
*
1144819 AATTATCATCTATTTTAACCTAAAA
130 AATTATGATCTATTTTAACCTAAAA
1144844 TAATAAAAAA
Statistics
Matches: 396, Mismatches: 59, Indels: 64
0.76 0.11 0.12
Matches are distributed among these distances:
161 2 0.01
162 117 0.30
163 134 0.34
164 9 0.02
165 3 0.01
168 2 0.01
169 7 0.02
170 8 0.02
171 108 0.27
172 6 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (164 bp):
TAAAATCATTTATAGATTATAAAATCGTTTAAAGTGACTAACTAGGCTTTTGAAGGCATGAGTGA
CTATAAATGGACTTTTTTTATCAATGGATGGCTTTCCATTCACATTTTCCAGAGGCAAACATCCA
ATTATGATCTATTTTAACCTAAAAAAATTAACTT
Found at i:1144883 original size:333 final size:334
Alignment explanation
Indices: 1141675--1147331 Score: 1264
Period size: 341 Copynumber: 16.7 Consensus size: 334
1141665 TTAAAGGCAC
* * * * ** * *
1141675 TTATAAAGTTATAAAACCACTTAAA-ACTAGTAACAAGGCTTTCGAAGTCATGAGTGACTATAAA
1 TTATAAAGTTATACAACAACTTAAAGA-GACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* * * * ** ** * ** *
1141739 TAGACTTTTTTTGTCAATCGATGGCTTTCACTTCATGTTTTCTAAGAAAAACATCCAATTATAAT
65 TAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * * *
1141804 CTCTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAAC-CATTT
130 CTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCATTT
* * * * * * *
1141867 AAAGTGAGTAGCTAGTCTTTT-GAAGGCATGAGTGATTATACATGGGC-TTTCTTGTCAACGGAT
195 AAAGTGAGTAACTAG-CTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAA
* * * * * *
1141930 GG-CTTTCACTTTAAT-TTTCCCAAGGTACACATCCAATTATGATATA-CTTAACCTATATTAAA
259 GGTCTTT-GC-TTCATGTTT-CCAAAGTAAACATCCAATTATGATCTATTTTAACC-----T--A
* * *
1141992 AAAAATTCAATTTAAAAGCGT
314 AAAAATTAAATTTAAAATCAT
* * * * * * *
1142013 TGATAAAGTTATA-AGACCACTTGAAGCGAGTAAGAAGGCTTTCAAAGGCATAAGTGACTATAAA
1 TTATAAAGTTATACA-ACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* * * * ** * * * *
1142077 TAGATTTTTCTTGTCAATGGATGGCTTTGGCTTTACATTTCCCAAGGCAAACATCCAATTATGAT
65 TAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * * * *
1142142 ATGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATGAA-ATTATAAAA-TCTTT
130 CTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTAT-AAGATTATAAAACTCATT
** * * * * * * *
1142205 TAAAGCAAGCAACTAGGCTTTT-AAAGGCATGAGTGATTATAAATGAACTTTTCATGTCAATGGA
194 TAAAGTGAGTAACTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGA
* * * * * * * * * * * *
1142269 TGG-CTTTCACTTCATATTTCCTGAGGCAAACTTCTAATTATGATATGTTTGAACATGAAATGAA
258 AGGTCTTT-GCTTCATGTTTCC-AAAGTAAACATCCAATTATGATCTATTTTAACCT-AAA--AA
**
1142333 AAAAAATAGTATAAAATCAT
318 ATTAAAT--T-TAAAATCAT
* * * * * * *
1142353 TCATAAAG----GCATC-ACTTAAAGCA-AGTAACAAGGCTTTTGAAGGCATGAGTGACTACAAA
1 TTATAAAGTTATACAACAACTTAAAG-AGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* ** ** * * * ** * * * *
1142412 TACACTTTTCCTATCAATGGATTGCTTTCGCTTCACGTTTCCCTTGGTAAACATCCAATTTTGAT
65 TAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * * * * * *
1142477 CTGTTTTAA-CTAAAACTGAAAAAAACATTTTAACATAAAATCATTTCTAAGATTATAAAAC-AA
130 CTATTGTAACCTAAAA-T-AAAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACTCA
* * * * * * * * *
1142540 TTTAAAGGGAGAAACAAAG-ATTTCAAACGCATAAGTGACTATAAATGGACCTTT-TTATCAATG
192 TTTAAAGTGAGTAAC-TAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGG
* * * * *
1142603 GATGG-CTTGTGCTTCATGTTTCTAAAGGAAAACATTCAATTATGATCTACTTTAACCAAAATTT
256 GAAGGTCTT-TGCTTCATGTTTCCAAA-GTAAACATCCAATTATGATCTATTTTAACC-------
* * *
1142667 TTAAAAAAAATTGAACTTAAAATCAC
312 -T--AAAAAATTAAATTTAAAATCAT
* * ** * * *
1142693 TTAT-AAGATTATA-AATTC-ATTTAAA-ACGAGTAATTAGGCTTTCAAAGCCATGAGTGACTAT
1 TTATAAAG-TTATACAA--CAACTTAAAGA-GACTAACAAGGCTTTTAAAGGCATAAGTGACTAT
* ** * * ** *
1142754 AAATAGACTTTTCTTATCAA-GAGATAGTTTTCACTTCATGATT-CTTAAGGTAAACATCCAATT
62 AAATAGACTTTTATTATCAATG-GACGGCTTTCACTTCA-CATTCCCCAAGGCAAACATCCAATT
* * * * * * * * * *
1142817 ATAA--TA-AGT---TTTAACT-AAAAACAATTTATCTTAAAATCTTTTATGACATTATAAAA-T
125 ATAAGCTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACT
* * * * ** * * * *
1142874 CATATAAAG-CAGGTAACTAGCCTTTCAAAGGCATGAGCAATTATCAATGGACTTTTCTTGTTAA
190 CATTTAAAGTGA-GTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAA
* * * * * * * * *
1142938 TGGAAGG-C-TCGCACTTCACGTTTAACAAGGCAAACTTTCAATAATGATCT-TTTTAACCTAAA
254 GGGAAGGTCTTTG--CTTCATGTTT-CCAAAGTAAACATCCAATTATGATCTATTTTAACCT-AA
**
1143000 ATAGAAAAAATTCATCTTAAAATCAT
315 A-A-AATTAA---AT-TTAAAATCAT
* * * * * * * *
1143026 TTATAAAGTTATAAAACCACTTAAAGTGA-TAAAAAAAGCTTTCAAAGGCATGAGTCACTATAAA
1 TTATAAAGTTATACAACAACTTAAAGAGACT-AACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* * * * * * * ** * * *
1143090 TAAACTTTTCA-TATCAATGGATGGCTTTCGCTTCATATTTCTCGATACAAGCATCAAATTATCA
65 TAGACTTTT-ATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAA
* ** * * * * *
1143154 TCTAATT-TAACAAAAAAT-GATAAAAATTAAATTTAAAATTATTTATAA-AGTTAT-AAAC-CA
129 GCT-ATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACTCA
* * * * * *
1143214 CTTAAAGTGAGTAACAAGGTTTTTGAAGGCATGAGTGAATATAAATAGACTTTTCTTATC-AGTG
192 TTTAAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAG-G
* * * * * *
1143278 G-ATGACTTTCGCTTCA-GCCTTTCCAAGGCAACCATCCAATTATGGTCTATTTTAACTAAAACA
256 GAAGGTCTTT-GCTTCATG--TTTCCAAAGTAAACATCCAATTATGATCTATTTTAAC-----C-
* * *
1143341 AAAAAGAACTTTAACTTAAAATCAT
312 TAAAA-AA-TTAAATTTAAAATCAT
* * * * ** * * * * * *
1143366 TTGTGAGAA--TATA-AACTATTTAAAGGGAGAAACTAGACTTTGAAAGGTATGAGTGATTATAA
1 TTAT-A-AAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAA
* * * * * * ** * *** *
1143428 ATGGAC-TTTCTTGTCAATGGATGACTTTCACTTTATGTTTCTTGAGGCAAACATCCAATTATGA
64 ATAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAA
* * * * * * * * * * * * * *
1143492 TCTGTTTTCATCTTAAATGAATAACAATCCAA-TTCACAATCATTTCTAAGGTTATAAAAC-CAC
129 GCTATTGTAACCTAAAATAAAAAAAAATTCAACTT-AAAATCATTTATAAGATTATAAAACTCAT
* ** * * * * * *
1143555 GTAAAGAAAGTAACAATA-CTTTT-GAAAGCATAAGTGACTATAAATGAAATTTTCTTGTCAATG
193 TTAAAGTGAGTAAC--TAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGG
* * * * * * *
1143618 GATGG-CTTTTGCTTTTCA--TTCCCTAAGGCAAATATCCAATTATGATCTATTTTAGCCAAAAC
256 GAAGGTC-TTTGC--TTCATGTTTCC-AAAGTAAACATCCAATTATGATCTATTTTAACC-TAA-
**
1143680 TGAAAAACAAACTCTACCTAAAATCAT
315 --AAAATTAAA-T-T---TAAAATCAT
* * * * * * * *
1143707 TTAT-AAGATTATGA-AACTATTTGAAGTGAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAA
1 TTATAAAG-TTAT-ACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAA
* * * * * * * ** * *
1143770 ATGGACTTTTCTTAGCAAGGGATGGCTTTCACTTCACCTTTCTTAAGGCAAATATCCAATTATTA
64 ATAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAA
** * * * * * * * * *
1143835 TTTGTTTTAACCAAAAAT-GAAAAAACTTTAACTTAAAATTATTTTTGAGATTAT-AAAC-CATT
129 GCTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCATT
* * * * ** * ** *
1143897 TAAAGTGAGTAACTAGGTTTTTGAAGGCATGAATGATTATAAATAAACTTTTCTTGTCAATTGAT
194 TAAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAA
* * * * *
1143962 GG-CTTTTGCTTCATGTTTCCCAATGTAAACTTCTAATGATGATCTATTTTAACTTTAATGAAAA
259 GGTC-TTTGCTTCATGTTT-CCAAAGTAAACATCCAATTATGATCTATTTTAAC----CT--AAA
* * *
1144026 ATAATTCAATTCACAATCAT
316 A-AATTAAATTTAAAATCAT
* * * ** * * ** * * *
1144046 TTCTAAGGTTATAAAAGTACAT-AATA-A-TAA-AA--CTTTCGAAGGCATGAGTAACCATAAAT
1 TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAAT
* * * *** * *** * *
1144105 ACAACTTTT-TTGTCAATGGATGGCTTTTGTTTCACGTTCCTTGAGGC--ATAT--GATT-T--G
66 A-GACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * *
1144162 -T-TT-TAA-CTAAAAATAAGAAAAAAAACTCTACCTAAAATCATTTATAAGATTATAAAA-TCA
130 CTATTGTAACCT-AAAAT-A-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCA
* *
1144222 TTTAAAGTGAGTAACTAGGTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAGGG
192 TTTAAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGG
* * * * *
1144287 ATGGTTTTTGCTTCATGTTTCCCAAAGTAAATATCTAATTATGATCTGTTTTAACCTAAAAAATT
257 AAGGTCTTTGCTTCATGTTT-CCAAAGTAAACATCCAATTATGATCTATTTTAACCTAAAAAATT
*
1144352 AAATTTAAAGTCAT
321 AAATTTAAAATCAT
* *
1144366 TTATAAAGTTATACAACAACTTAAATAGACTAACAAGGCTTTTAAAGGCATGAGTGACTATAAAT
1 TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAAT
* * * ** * *
1144431 GGACTTTTATTGTCAATGGACGGCTTTTACTTCACATTTTCCAAGGCACACATCTAATTATAAGC
66 AGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAGC
* * *
1144496 TGTTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACT-GTTTA
131 TATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCATTTA
* * * * * *
1144560 AAGTGGGTAACTTAGCTTTT-GAAGGCATGAGTGATTGTAAATGGACTTTTTTTATGAATGGAAG
196 AAGTGAGTAAC-TAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAAG
*
1144624 G-CTTT-CATTACATGTTT-CATGAGTCAAACATCCAATTATGATCTATTTTAA-CTAAAAAAAT
260 GTCTTTGC-TT-CATGTTTCCA-AAGT-AAACATCCAATTATGATCTATTTTAACCT-AAAAAAT
*
1144685 TAACTTTAAAAT-AT
320 TAAATTTAAAATCAT
* * * * * * *
1144699 TTATCATA-TTATA-AA-ATCGTTTAAAGCGACTAACTAGGTTTTTGAAGGCATAAGTGATTATA
1 TTAT-AAAGTTATACAACAAC--TTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATA
* * *
1144761 AATAGACTTTT-TTCATCAATGGATGGCTTTCCCTTCACATTCCCCGAGGCAAACATCCAATTAT
63 AATAGACTTTTATT-ATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTAT
* * * * * * *
1144825 CATCTATTTTAACCTAAAATAATAAAAAATTCAATTTAAAGTCATTTATAAAATTATAAAAC-CA
127 AAGCTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCA
* ** * * * *
1144889 CTT-AAG-GAGCCTAA-TAAGGCTTTT-GAAGTAATGAGTAAATATAAATGAACTTTTCTTATTA
192 TTTAAAGTGAG--TAACT-A-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCA
** ** ** * * *
1144950 ATAGATTG-CTTT-CGTCTCATGTTTCTTAAGACAAACATCCAATTATCAGT-TGTTTTAACCAA
253 AGGGAAGGTCTTTGC-T-TCATGTTTCCAAAG-TAAACATCCAATTATGA-TCTATTTTAACC--
* *
1145012 GAATGCAAAAAA-AAATCATCTTAAAATAAT
312 ---T--AAAAAATTAA--AT-TTAAAATCAT
* * * ** * * * * * *
1145042 TTATGAAGTTATAAAATC-ACTAAAATCGAATAATAAGGCTTTCAAAAGCATGAGTGACTATCAA
1 TTATAAAGTTATACAA-CAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* * ** * * * * ** * ** * * * * * *
1145106 TGGAGTTTCCTTGTTAAAGGACAGCTTTTGCTTTATGTTTCTCAAGGAAAATATCCAATTATGAT
65 TAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * * * * *
1145171 ATATTTTAA-CTAAAA-ATAAAAAAATTCAACTTAAAATCATTTATGAGATTCTAAAAC-AATTT
130 CTATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCATTT
* * * * * *
1145233 AAAGTGAGTAACTAGGCTTTT-GATGACATGAGTGACTATAAATGAAATTTTCTTATCAAAGGAT
195 AAAGTGAGTAACTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAA
* * * * **
1145297 GG-CTTTCACTTCATGATTACCAATAG-AAACATCAAATTATGGTCTAATTTAATGAAAAATAAA
259 GGTCTTT-GCTTCATG-TTTCCAA-AGTAAACATCCAATTATGATCT-ATTT--T--AACCTAAA
*
1145360 AAATTTAATTTAAAATCAT
316 AAATTAAATTTAAAATCAT
* * * * * ** ** * *
1145379 TTATAAAGTTATAAAATC-ACTTAAAGGGAGTAATAACGCTTTCGAAGATATGAGTGGCTATAAA
1 TTATAAAGTTATACAA-CAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAA
* * * * ** ** ** * *
1145443 TAGACTTTTCTTATCAATAGATGGCTTCCACTTCATGTTTGCCAAGTAAAATATCTAATTAT--G
65 TAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAG
* * ** * * *
1145506 TTATGGGTTAACAAAAAATAAAAAAAAA-TCAA-TTCAAAATAATTTATGAGACTAT-AAAC-CA
130 CTAT-TG-TAACCTAAAATAAAAAAAAATTCAACTT-AAAATCATTTATAAGATTATAAAACTCA
** * ** * * * **
1145567 TTTGGAGCGAGTAACTAGAGTTACGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAG
192 TTTAAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGG
* *** * * * * **
1145632 ATGG-CTTTCGCTTCACACTTCCTAAGGCAAACATCCAATTATGATGTGTTTTAAATAAAAATGT
257 AAGGTCTTT-GCTTCATGTTTCC-AAAGTAAACATCCAATTATGATCT-ATTT---T---AACCT
* *
1145696 AAAAAAATTCAACTTAAAATCAT
313 -AAAAAATTAAATTTAAAATCAT
* * * * * * * * * *
1145719 TTAT-GAGATTATA-AACCATTTAAAGCGATTAATTC-A-CCTTTTGAAGACATAGGTGATTATA
1 TTATAAAG-TTATACAACAACTTAAAGAGACTAA--CAAGGCTTTTAAAGGCATAAGTGACTATA
* * * ** * * *
1145780 AAT-GAACTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTTCC-ATGAAAAAATCCAATTAT
63 AATAG-ACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTAT
* ** * * * * * * * *
1145843 GATATGTTTTAAGCTCAAATAAAAAAAAGAGTTGAA-TTCACAATCATTTCTAAGGTTATAAAAC
127 AAGCTATTGTAACCTAAAATAAAAAAAA-A-TTCAACTT-AAAATCATTTATAAGATTATAAAAC
** * ** * * * * * * * *
1145907 -CGCGTGAAA-CAAGCAACAAGGCTTTT-AAAGGTATGAGTGACTATAAATAGAATTTTCTTGTT
189 TC-ATTTAAAGTGAGTAACTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC
* * * * * ** * * * **
1145969 AATGGATGGTTTTTACTTTATGTTTCCTTAGCCAAACATCCAATTATGATTTGTTTAACTAAAAA
252 AAGGGAAGGTCTTTGCTTCATGTTTCCAAAG-TAAACATCCAATTATGATCTATTT---T-AACC
* * * *
1146034 TGAAAAAAAACCTAAACTTAAAATTAC
312 T---AAAAAA-TTAAATTTAAAATCAT
* *** * * ** * * ** ** * *
1146061 TAATGGGGTTATA-AACCATTTAAAGCTAGTAACTAGGCTTTCGAAGATATAAATGATTATAAAT
1 TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAAT
** * * * ** ** ***** * * * * **
1146125 AGACTTTTCCTATCAAAGGATGTCTTTTGCTTCATGTTTGTTTAGTCAAGCATCCAATTGTGATT
66 AGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAGC
* * * * * * * *
1146190 TGTTTTAACCTTAAATTAAAAAGAATTCAA-TTAATAATCATTTCTAAGGTTATAAAAC-CATGT
131 TATTGTAACCTAAAATAAAAAAAAATTCAACTTAA-AATCATTTATAAGATTATAAAACTCATTT
** * * * * * * * *
1146253 AAAGCAAGTAACAAGGCTTTT-AAAGGCATGACTGA-TATAAATAGAATTTTCTTACCAATGGAT
195 AAAGTGAGTAACTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAA
* ** * * * * * * *
1146316 GGTTTTTAATTAACGTTTCTCAAGGAAAACATCAAATTATAATCTGTTTTAACCAAAAGTAAAAA
259 GGTCTTTGCTTCATGTTTC-CAAAGTAAACATCCAATTATGATCTATTTTAACC-----T--AAA
* * * *
1146381 AGAACTCAATCTAAAACCAT
316 A-AATTAAATTTAAAATCAT
* ** * * * * * * * *
1146401 TTAT-AAGATTATA-AA-ATCGTTTAAAGCCAATAACTAGGCTTTAAAAAGAATGATTGACCATA
1 TTATAAAG-TTATACAACAAC--TTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATA
* ** * * * * * * * * * *
1146463 AATAGACTTTTCTCGTTAAGGGATGGATTTCACTTCACGTTTCCCAGGGAAAACATCTAATTATG
63 AATAGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATA
* * * * ** * *
1146528 ATCTGTTCTAA-TTAAAAATAAAAAGGAATTCAACTTAAACTCATTTATGAGATTATAAAAC-CA
128 AGCTATTGTAACCT-AAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCA
* * * * ** *
1146591 TTTAAAATGAGTAATTAGGC-TTTCGAAAGCATGAGTGATTATAAATATACTTTTCTTA-CGAAT
192 TTTAAAGTGAGTAACTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AAG
* * * * * *
1146654 GGATA-G-CTTTCACTTCATCTTTCTTAAGGCAAACATCCAATTATTATCTATTTTAACTTAAAC
255 GGA-AGGTCTTT-GCTTCATGTTTC-CAAAGTAAACATCCAATTATGATCTATTTTAAC-----C
** * *
1146717 TGAAAAAAATCCAATTGAAAATCTT
312 T--AAAAAATTAAATTTAAAATCAT
* * * * * *
1146742 TTCTAAAGTTATACAACCACTTAAATAGACTAGCAAGGCTTTTGAAA-GAATGAGTGACTATAAA
1 TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTT-AAAGGCATAAGTGACTATAAA
* * * *** * ** ** * *
1146806 TAAACTTTTCTTGTCAATGGATC-GCTTTTGTTTTATGTTTTCCAAGGCAAACATCCAACTATGA
65 TAGACTTTTATTATCAATGGA-CGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAA
* * * * *
1146870 TCTATTTTAA-CTAAAA-ATAAAAAAAA-TCAACTTAAAAACATTTGTGAGATTATAAAAC-CAT
129 GCTATTGTAACCTAAAATA-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCAT
* * * * * *
1146931 TTAAAATGAGTAACTAAGC-TTTCGAAGGCATGAATGATTATAAATAGACTTTTTTTATCAA-TG
193 TTAAAGTGAGTAACT-AGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGG
* * * * ** * *** * *
1146994 AATGG-CTTTTCTCCTATGTTCTCTAAGGCCAATATCCAATTGCCATTTGTTTTAACCTAAAATG
257 AA-GGTCTTTGCTTC-ATGTT-TCCAAAGTAAACATCCAATTATGATCTATTTTAACC-------
* *
1147058 ATAAAAAATTCAATTTAAAGTCAT
312 -TAAAAAATTAAATTTAAAATCAT
* * * * * * ** * * *
1147082 TTATAAAGTTATAAAACTACTTAAGGTGAGTAACAAGGCTTTTGAAGATATGAGTAAATATAAAT
1 TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAAT
* * ** ** * * **
1147147 AGACTTTTTTTATCAATGGATGGCTTTCACTTCATGTTTTCTAAGGCAAACATCCAATTATGATA
66 AGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAGC
* * * * * * *
1147212 TGTTTTAACCAAAAATAAAGAAAAAAAAATCATCTTAACATCATTTGTAA-AGTTATAAAAC-CA
131 TATTGTAACCTAAAAT--A-AAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACTCA
* * * * * * *
1147275 TTGAAAGCT-AGTAACAAGGTTTTCAAAGGCATGAGTAACTATAAATGAAGTTTTCTT
192 TTTAAAG-TGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT
1147332 GTCATTGGAT
Statistics
Matches: 4054, Mismatches: 965, Indels: 593
0.72 0.17 0.11
Matches are distributed among these distances:
320 30 0.01
321 8 0.00
322 2 0.00
323 12 0.00
324 4 0.00
325 7 0.00
326 79 0.02
327 115 0.03
328 6 0.00
329 6 0.00
330 3 0.00
331 10 0.00
332 17 0.00
333 393 0.10
334 159 0.04
335 130 0.03
336 157 0.04
337 329 0.08
338 330 0.08
339 442 0.11
340 456 0.11
341 590 0.15
342 353 0.09
343 225 0.06
344 28 0.01
345 155 0.04
346 7 0.00
347 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (334 bp):
TTATAAAGTTATACAACAACTTAAAGAGACTAACAAGGCTTTTAAAGGCATAAGTGACTATAAAT
AGACTTTTATTATCAATGGACGGCTTTCACTTCACATTCCCCAAGGCAAACATCCAATTATAAGC
TATTGTAACCTAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTCATTTA
AAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAAGGGAAGG
TCTTTGCTTCATGTTTCCAAAGTAAACATCCAATTATGATCTATTTTAACCTAAAAAATTAAATT
TAAAATCAT
Found at i:1145468 original size:168 final size:169
Alignment explanation
Indices: 1145182--1145816 Score: 442
Period size: 168 Copynumber: 3.8 Consensus size: 169
1145172 TATTTTAACT
* * * *
1145182 AAAAATAAAAAAATTCAACTTAAAATCATTTATGAGATTCTAAAACAATTTAAAGTGAGTAACTA
1 AAAAATAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACAACTTAAAGGGAGTAACTA
* * * *
1145247 GGCTTTTGATGACATGAGTGACTATAAATGAAATTTTCTTATCAAAGGATGGCTTTCACTTCATG
66 CGCTTTCGAAGACATGAGTGACTATAAATGAAATTTTCTTATCAAAGGATGGCTTCCACTTCATG
1145312 ATTACCAA-TAGAAACATCAAATTATGGTCTAATTTAATG
131 ATTACCAAGTA-AAACATCAAATTATGGTCTAATTTAATG
* *
1145351 AAAAAT-AAAAAATTTAATTTAAAATCATTTATAA-AGTTATAAAATC-ACTTAAAGGGAGTAA-
1 AAAAATAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-CAACTTAAAGGGAGTAAC
* * *
1145412 TAACGCTTTCGAAGATATGAGTGGCTATAAAT-AGACTTTTCTTATCAATA-GATGGCTTCCACT
64 T-ACGCTTTCGAAGACATGAGTGACTATAAATGA-AATTTTCTTATCAA-AGGATGGCTTCCACT
* * * * * * *** **
1145475 TCATGTTTGCCAAGTAAAATATCTAATTATGTTATGGGTTAACA
126 TCATGATTACCAAGTAAAACATCAAATTATGGTCTAATTTAATG
* * * * * * ** *
1145519 AAAAATAAAAAAAAATCAA-TTCAAAATAATTTATGAGACTAT-AAACCATTTGGAGCGAGTAAC
1 AAAAAT-AAAAAAATTCAACTT-AAAATCATTTATAAGATTATAAAACAACTTAAAGGGAGTAAC
* * * * * * *
1145582 TA-GAGTTACGAA-AGCATGAGTGACTATAAATGGACTTTTCTTGTCAATA-GATGGCTTTCGCT
64 TACG-CTTTCGAAGA-CATGAGTGACTATAAATGAAATTTTCTTATCAA-AGGATGGCTTCCACT
* ** * * * **
1145644 TCA-CACTT-CCTAAGGCAAACATCCAATTATGATGTGTTTTAAAT-
126 TCATGA-TTACC-AAGTAAAACATCAAATTATGGTCTAATTT-AATG
* * * * * *
1145688 AAAAATGTAAAAAAATTCAACTTAAAATCATTTATGAGATTAT-AAACCATTTAAAGCGATTAAT
1 AAAAA--TAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACAACTTAAAGGGAGTAAC
* * * * * *
1145752 TCAC-CTTTTGAAGACAT-AGGTGATTATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTT
64 T-ACGCTTTCGAAGACATGA-GTGACTATAAATGAAATTTTCTTATCAAAGGATGGCTTCCACTT
1145815 CA
127 CA
1145817 CATTTTCCAT
Statistics
Matches: 374, Mismatches: 66, Indels: 51
0.76 0.13 0.10
Matches are distributed among these distances:
167 3 0.01
168 136 0.36
169 106 0.28
170 123 0.33
171 6 0.02
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (169 bp):
AAAAATAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACAACTTAAAGGGAGTAACTA
CGCTTTCGAAGACATGAGTGACTATAAATGAAATTTTCTTATCAAAGGATGGCTTCCACTTCATG
ATTACCAAGTAAAACATCAAATTATGGTCTAATTTAATG
Found at i:1151268 original size:8 final size:8
Alignment explanation
Indices: 1151255--1151293 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
1151245 TAGGCCAAAC
1151255 CTTCCTTT
1 CTTCCTTT
1151263 CTTCCTTT
1 CTTCCTTT
*
1151271 CTTTCTTT
1 CTTCCTTT
1151279 CTTCCTTT
1 CTTCCTTT
1151287 GCTTCCT
1 -CTTCCT
1151294 AGCCGAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 22 0.79
9 6 0.21
ACGTcount: A:0.00, C:0.36, G:0.03, T:0.62
Consensus pattern (8 bp):
CTTCCTTT
Found at i:1151923 original size:21 final size:22
Alignment explanation
Indices: 1151872--1151923 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
1151862 GTTTCCTTTT
1151872 CTTTCATTTGCATTACATTTCA
1 CTTTCATTTGCATTACATTTCA
* * *
1151894 CATGT-ATTT-TATTGCATTTCA
1 C-TTTCATTTGCATTACATTTCA
1151915 CTTTCATTT
1 CTTTCATTT
1151924 CCTTTTAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 2 0.08
21 15 0.62
22 5 0.21
23 2 0.08
ACGTcount: A:0.21, C:0.19, G:0.06, T:0.54
Consensus pattern (22 bp):
CTTTCATTTGCATTACATTTCA
Found at i:1153673 original size:340 final size:340
Alignment explanation
Indices: 1153327--1153956 Score: 747
Period size: 339 Copynumber: 1.9 Consensus size: 340
1153317 ATTATAATTA
* * * * *
1153327 GACTTTTCTTGT-GAATTGAAGGCTTTCACTTCATGCTTC-CAAGGCAAAGATCCAATTATAATT
1 GACTTTTCTT-TCAAATGGAAGGCTTTCACTTCATGCTTCTCAAGGCAAACATCCAATTACAATC
* * **
1153390 TATTTTAACCT-AAAGTGAAAAAA-AATCAATTAAAAATCATTTATGAGATTGTACCACCATTGA
65 TATTTTAA-CTAAAAAT-AAAAAATAATCAATT-AAAATCATTTATGAGATTATAAAACCATTGA
* * * * * * *
1153453 AAGCAAGTGAGTAGGTTTTTTGAAGGTATGAGTGATTGTAAATGGACTTTTCTTCTAAATGGATG
127 AAACAAGTAACTAGG-TTTTCGAAGGGATGAGTGATTATAAATAGACTTTTCTTCTAAATGGATG
* * * * *
1153518 GCTTTC-GCTCCA-CGT-TTCCAGAAGCAAACGTCCAATTCTGATATGTTTTAATGTAAAATG-A
191 GCTTTCAG-TCCATAGTATTCAAGAA--AAACATCCAATTATGATATGTTTTAATCTAAAATGAA
*
1153579 AAAAAATTCAATTTAAAATC-TATTATAAAGTTATAAACACACTAAAAGTGAATAACAAGGTTTT
253 AAAAAATTCAATTTAAAATCAT-TTATAAAGTAATAAACACACTAAAAGTGAATAACAAGGTTTT
1153643 AGAAGGCCCGAATGACTATAAAAT
317 AGAAGGCCCGAATGACTATAAAAT
* * **
1153667 GACTTTTCTTTCAAATGGATGGCTTTCACTTCATGTTTCTTGAGGCAAACATCCAATTACAATCT
1 GACTTTTCTTTCAAATGGAAGGCTTTCACTTCATGCTTCTCAAGGCAAACATCCAATTACAATCT
* * * * * * *
1153732 GTTTTAACTAAAAATAAAAAATATTCACTTAAAGTCATTTATGGGATTATAAAACCATTTAAAAT
66 ATTTTAACTAAAAATAAAAAATAATCAATTAAAATCATTTATGAGATTATAAAACCATTGAAAAC
* *
1153797 GAGTAACTAGGTTTTCGAAGGGATGAGTGATTATAAATAGACTTTTCTTCTGAATGGATGGCTTT
131 AAGTAACTAGGTTTTCGAAGGGATGAGTGATTATAAATAGACTTTTCTTCTAAATGGATGGCTTT
* * * *
1153862 CAGTTCATATTATTCAAGAAAAACATCCAATTATGATCTTTTTTAATCTAAAATGAAAAAAAAAT
196 CAGTCCATAGTATTCAAGAAAAACATCCAATTATGATATGTTTTAATCTAAAATG-AAAAAAAAT
*
1153927 TCAATTTAAAGTCATTTATAAAGTAATAAA
260 TCAATTTAAAATCATTTATAAAGTAATAAA
1153957 ACCACTTAAG
Statistics
Matches: 240, Mismatches: 40, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
339 84 0.35
340 78 0.32
341 77 0.32
342 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (340 bp):
GACTTTTCTTTCAAATGGAAGGCTTTCACTTCATGCTTCTCAAGGCAAACATCCAATTACAATCT
ATTTTAACTAAAAATAAAAAATAATCAATTAAAATCATTTATGAGATTATAAAACCATTGAAAAC
AAGTAACTAGGTTTTCGAAGGGATGAGTGATTATAAATAGACTTTTCTTCTAAATGGATGGCTTT
CAGTCCATAGTATTCAAGAAAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAAAAAATT
CAATTTAAAATCATTTATAAAGTAATAAACACACTAAAAGTGAATAACAAGGTTTTAGAAGGCCC
GAATGACTATAAAAT
Found at i:1154149 original size:171 final size:169
Alignment explanation
Indices: 1152858--1154804 Score: 902
Period size: 170 Copynumber: 11.5 Consensus size: 169
1152848 ACATTTTCCA
* * * * *
1152858 AGGCAAATATCCAATTATGATCTGTTTTAA-CTAAAAATGAATAAGAGATTCAACTTAAAATCAT
1 AGGCAAACATCCAATTATGATATGTTTTAATCT-AAAATGAA-AACAAATTCAACCTAAAATCAT
* * * * * * * * * *
1152922 TTATGAGATTTTACAACCATTGAAAGTGAGTAACT-AGGCTTTCAAAGGTA-CGAGTGATTGTAA
64 TTATAAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTAAAAGGCATTG-GTGACTATAA
* * * * * ** *
1152985 ATGAACTTTTCTTGTGAATGGATGGCTTTTGC-TC-CATGTCTCCTA
127 ATGGACTTTTCTTATCAA-GGATAG-TTTCGCTTCACAT-T-TTTTG
* * * ** *
1153030 AGACAAATATCCAATTATGATATGTTTTAACCTAAAAT-AAAA-AAATTCAATTTAAAATCTTTT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCTAAAATCATTT
** * * * * ***
1153093 ATAA-AGTTATAAAATAACTGAAAGCGACTAATAGGGCTTCCGAAGGCA-TGAGTGACTATAAAT
66 ATAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTG-GTGACTATAAAT
* * * * * ***
1153156 GGACTTTTTTTA-CTAGTGGTGGCTTTCTCTTCACA-TTTCCC
129 GGACTTTTCTTATCAAG-GATAG-TTTCGCTTCACATTTTTTG
* * * ** * *
1153197 AAGCTCAACATCCAATTATGATCTACTTTAA-CTAAAAAT-AAAAAATAATTTC-ACTTAAAATC
1 AGGC-AAACATCCAATTATGATATGTTTTAATCT-AAAATGAAAACA-AA-TTCAACCTAAAATC
* * ** ** * * * *
1153259 ATTTATGAGATTATAAAACCATTTAAAGCAACCAATTGGGCTTTCAAAGCCA-TGAGTAATTATA
62 ATTTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTG-GTGACTATA
* * * * * * * ***
1153323 ATTAGACTTTTCTTGTGAATTGA-AGGCTTTCACTT--CATGCTTCCA
126 AATGGACTTTTCTTATCAA-GGATA-G-TTTCGCTTCACAT-TTTTTG
* * * * * * * *
1153368 AGGCAAAGATCCAATTATAATTTATTTTAACCTAAAGTGAAAA-AAAATCAA-TTAAAAATCATT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCT-AAAATCATT
* * ** * * * * ** * * *
1153431 TATGAGATTGTACCACCATTGAAAGCAAGTGAGT-AGGTTTTTTGAAGGTA-TGAGTGATTGTAA
65 TATAAGATTATAAAACCATTTAAAGCGAGT-AATAAGG-CTTTAAAAGGCATTG-GTGACTATAA
* * * * * ***
1153494 ATGGACTTTTCTTCTAAATGGATGGCTTTCGCTCCACGTTTCCAG
127 ATGGACTTTTCTTATCAA-GGATAG-TTTCGCTTCACATTTTTTG
* * * * **
1153539 AAGCAAACGTCCAATTCTGATATGTTTTAATGTAAAATGAAAA-AAATTCAATTTAAAATC-TAT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCTAAAATCAT-T
* * * * * * * ** *
1153602 TATAA-AGTTAT-AAACACACTAAAAGTGAATAACAAGGTTTTAGAAGGC-CCGAATGACTATAA
65 TATAAGA-TTATAAAAC-CATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTG-GTGACTAT-A
* * ** *
1153664 AAT-GACTTTTCTT-TCAAATGGATGGCTTTCACTTCATGTTTCTTG
126 AATGGACTTTTCTTATC-AA-GGATAG-TTTCGCTTCACATTTTTTG
** * * *
1153709 AGGCAAACATCCAATTACAATCTGTTTTAA-CTAAAAAT-AAAA-AATATTC-ACTTAAAGTCAT
1 AGGCAAACATCCAATTATGATATGTTTTAATCT-AAAATGAAAACAA-ATTCAACCTAAAATCAT
** ** * ** * *
1153770 TTATGGGATTATAAAACCATTTAAAATGAGTAACT-AGGTTTTCGAAGGGA-TGAGTGATTATAA
64 TTATAAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTAAAAGGCATTG-GTGACTATAA
* * * * * * **
1153833 ATAGACTTTTCTTCTGAATGGATGGCTTTCAG-TTCATATTATTCA
127 ATGGACTTTTCTTATCAA-GGATAG-TTTC-GCTTCACATTTTTTG
** * * * ** *
1153878 AGAAAAACATCCAATTATGATCTTTTTTAATCTAAAATGAAAAAAAAATTCAATTTAAAGTCATT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATG-AAAACAAATTCAACCTAAAATCATT
* * * ** * * * *
1153943 TATAA-AGTAATAAAACCACTTAAGGTTACTAATAAGGGTTTCAAAGGCATTGGTGACTACAAAT
65 TATAAGA-TTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTGGTGACTATAAAT
* *
1154007 GGACTTTTTTTATCAAGGGATAGTATTTGCTTCACATTTTTTG
129 GGACTTTTCTTATCAA-GGATAGT-TTCGCTTCACATTTTTTG
* * *
1154050 AGACAAACATCCAATTATGATATGTCTT-ATCTAACAGTGAAAACAAATTCAACCTAAAATCATT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAA-AATGAAAACAAATTCAACCTAAAATCATT
* *
1154114 TATAAGATTATAAAACCATTTGAAGCGAGTAATAAGGCTTTAAAAGGCATGGGTGACTATAAATG
65 TATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTGGTGACTATAAATG
* **
1154179 GACTTTTCTTGTCAATAATA-TCTTACGCTTCACATTTTTTG
130 GACTTTTCTTATCAAGGATAGT-TT-CGCTTCACATTTTTTG
* *
1154220 AGGCAAACATCCAATTATGATATGTCTT-ATCTAAAAATGAAAACAAATTCAACCTAAAATTATT
1 AGGCAAACATCCAATTATGATATGTTTTAATCT-AAAATGAAAACAAATTCAACCTAAAATCATT
*
1154284 TATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATGGGTGACTATAAATG
65 TATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTGGTGACTATAAATG
* * ** *
1154349 GAATCTTCTTATCAATAATAGCTTTCGCTTCACATTTCTTG
130 GACTTTTCTTATCAAGGATAG-TTTCGCTTCACATTTTTTG
* * * * * * * *
1154390 AGGTAAACATCCAATTATGATCTTTTTTGACCAAAAATGAAAACAATTTCAACTTAAAATCATTT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCTAAAATCATTT
* * *** * * *
1154455 ATAGGATTATAAAACCATTTAAAGTGAGTAACT-AGG-TTTTTTAGGGAATGAGTGATTATAAAT
66 ATAAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTAAAAGGCATTG-GTGACTATAAAT
* ** * **
1154518 GGACTTTTCTTGTCAATGGA-AGGATTTAACTTCATATTTCCTG
129 GGACTTTTCTTATCAA-GGATA-G-TTTCGCTTCACATTTTTTG
* * ** * ** * *
1154561 AGACAAACTTTGAACTATGACCTATTTTAA-CTAAGAAT--AAA-AAATTCAACCTAAAAACATT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAA-AATGAAAACAAATTCAACCTAAAATCATT
* * * * ** *
1154622 TATGAGAGTATAAAATCATTTAAAACGAGTAACT-AGGCTTTCGAAGGCA-TGAGTGATTAT-AA
65 TATAAGATTATAAAACCATTTAAAGCGAGTAA-TAAGGCTTTAAAAGGCATTG-GTGACTATAAA
* * * * *
1154684 TGGACTTTTCTTATCAATGGATGGCTTTCACTTCACGTTCTCTG
128 TGGACTTTTCTTATCAA-GGATAG-TTTCGCTTCACATTTTTTG
* * * * ** *
1154728 AGGTAAACATCCAATTATGATCTGTTTTAATCTAAAGT-AAAAAAAATTCAATTTAAAGTCATTT
1 AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCTAAAATCATTT
1154792 ATAA-ATTGATAAA
66 ATAAGATT-ATAAA
1154805 TTATGATTTG
Statistics
Matches: 1402, Mismatches: 301, Indels: 147
0.76 0.16 0.08
Matches are distributed among these distances:
167 68 0.05
168 119 0.08
169 278 0.20
170 527 0.38
171 254 0.18
172 152 0.11
173 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AGGCAAACATCCAATTATGATATGTTTTAATCTAAAATGAAAACAAATTCAACCTAAAATCATTT
ATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTAAAAGGCATTGGTGACTATAAATGG
ACTTTTCTTATCAAGGATAGTTTCGCTTCACATTTTTTG
Found at i:1154856 original size:64 final size:63
Alignment explanation
Indices: 1154740--1154860 Score: 179
Period size: 64 Copynumber: 1.9 Consensus size: 63
1154730 GTAAACATCC
* *
1154740 AATTATGATCTGTTTTAATCTAAAGTAAAAAAAATTCAATTTAAAGTCATTTATAAATTGATA
1 AATTATGATCTGTTTTAATCAAAAGTAAAAAAAATTCAATTTAAAATCATTTATAAATTGATA
* * * *
1154803 AATTATGATTTGTTTTAATCAAAAATTAAAAAACATTCATTTTAAAATCATTTATAAA
1 AATTATGATCTGTTTTAATC-AAAAGTAAAAAAAATTCAATTTAAAATCATTTATAAA
1154861 GTTACAAAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
63 19 0.37
64 32 0.63
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (63 bp):
AATTATGATCTGTTTTAATCAAAAGTAAAAAAAATTCAATTTAAAATCATTTATAAATTGATA
Found at i:1155358 original size:170 final size:170
Alignment explanation
Indices: 1154803--1155510 Score: 575
Period size: 170 Copynumber: 4.2 Consensus size: 170
1154793 TAAATTGATA
* * * * *
1154803 AATTATGATTTGTTTTAATCAAAAAT-TAAAAAACATTCATTTTAAAATCATTTATAAAGTTACA
1 AATTATAATCTGTTTTAATAAAAAATATAAAACA-ATTCATTTTAAAATCATTTATAAAGTTATA
* * * * * * * * * * *
1154867 AAACCACTGAAAGCGAGTAATAAGGCTTTCGAATA-TATGAGTGACTATAATTAGAGTTTCCTAG
65 AAACCACTTAAAGTGAGTAACAAGACTTTCGAA-AGCATGAATGACTATAAATGGACTTTTCTTG
* * * * * *
1154931 TAATGGATAGCTTTAGTTTCACATTTCTCAAGGTAAACATCC
129 CAATAGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATCC
* * ** ** *
1154973 AATTATGATATGTTTTAATTCAAAATA-AAAA-AATTCAGCTTAAAATCATTTAT-GAGATTATA
1 AATTATAATCTGTTTTAATAAAAAATATAAAACAATTCATTTTAAAATCATTTATAAAG-TTATA
*** * * *
1155035 AAACGTTTTAAAGTGAGTAACTAAG-CTTTTGAACGCAT-AAGTGACTATAAATGTACTTTT-TT
65 AAACCACTTAAAGTGAGTAAC-AAGACTTTCGAAAGCATGAA-TGACTATAAATGGACTTTTCTT
* * **
1155097 --TATAGATGGCTTTTGCTTCACGTTT-TCCAATGTAAACATTA
128 GCAATAGATGGCTTTTGCTTCACGTTTCT-CAAGGTAAACATCC
* *** * * * * *
1155138 AATTATTATCAAATTTAATGAGAAAT-GACAACAATTCAATTTAAAATCATTTATAAAGTTATAA
1 AATTATAATCTGTTTTAATAAAAAATATAAAACAATTCATTTTAAAATCATTTATAAAGTTATAA
* *
1155202 AACCACTAAAAGTGAGTAACAAGAATTTCGAAAGCAT-AATGACTATAAATGGACTTTTCTTGCC
66 AACCACTTAAAGTGAGTAACAAGACTTTCGAAAGCATGAATGACTATAAATGGACTTTTCTTG-C
* * * *
1155266 AATGGATGGCTTTTGCTTCATGTGTTC-CAAAGCAAACATCC
130 AATAGATGGCTTTTGCTTCACGT-TTCTCAAGGTAAACATCC
* *
1155307 AATTATAATTTGTTTTAATAAAAAATATAAAACAATTCATTTTAAAATCATTTATAAAGTTATAC
1 AATTATAATCTGTTTTAATAAAAAATATAAAACAATTCATTTTAAAATCATTTATAAAGTTATAA
* * * * * ** *
1155372 AACCACTTTAA-TAGACTAACAAGACTTTTGAAGGTATGAGGGACTATAAATGGACTTTTCTTAT
66 AACCACTTAAAGT-GAGTAACAAGACTTTCGAAAGCATGAATGACTATAAATGGACTTTTCTT-G
* * *
1155436 CAACAGATGGCTTTTACTTCATGTTTCTCAAGGTAAACATCC
129 CAATAGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATCC
* *
1155478 AATTA-AGATCTGTTTGAACAAAAAATGATAAAA
1 AATTATA-ATCTGTTTTAATAAAAAAT-ATAAAA
1155511 GTTCAACTTA
Statistics
Matches: 427, Mismatches: 88, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
164 1 0.00
165 72 0.17
166 56 0.13
167 6 0.01
168 61 0.14
169 54 0.13
170 95 0.22
171 76 0.18
172 6 0.01
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (170 bp):
AATTATAATCTGTTTTAATAAAAAATATAAAACAATTCATTTTAAAATCATTTATAAAGTTATAA
AACCACTTAAAGTGAGTAACAAGACTTTCGAAAGCATGAATGACTATAAATGGACTTTTCTTGCA
ATAGATGGCTTTTGCTTCACGTTTCTCAAGGTAAACATCC
Found at i:1155827 original size:174 final size:177
Alignment explanation
Indices: 1155513--1155857 Score: 389
Period size: 174 Copynumber: 2.0 Consensus size: 177
1155503 TGATAAAAGT
* * * * * * *
1155513 TCAACTTACAGTCATTTATGAGATCATAAAACCTTTTTAAGCCGGGTAACTCGACTTTTGAAGAC
1 TCAACTTAAAATCATTTATGAGATCATAAAACCATTTAAAGCCGAGTAACTAGACTTTCGAAGAC
* * *
1155578 ATGAGTGATTATAATGGACTTTTCTTGTGAATGGCAAGCTTTCACCTTATGTTTATTAAGGCAAA
66 ATGAGTGATTATAATGAACTTTTCTTGTGAATGGCAAGCTCTCACCTTATGTTTATGAAGGCAAA
*
1155643 CAACCAATTAT-ATATGTTTTAACCAAAAAT-AAAACAAAAAAAAAC
131 CAACCAATTATGATACGTTTTAACCAAAAATAAAAACAAAAAAAAAC
* * * **
1155688 TCAACTTAAAATCATTTATGAGATTATAAAATCATTTAAAG-CGAGTAACTAGGCTTTCGAAGGT
1 TCAACTTAAAATCATTTATGAGATCATAAAACCATTTAAAGCCGAGTAACTAGACTTTCGAAGAC
* *
1155752 GTGA-TGATTATAAATGAACTTTTCTTGTGAATGG-AAGGCTCTCA-CTTCATGTTTCATGATGG
66 ATGAGTGATTAT-AATGAACTTTTCTTGTGAATGGCAA-GCTCTCACCTT-ATGTTT-ATGAAGG
* ** * *
1155814 -TAACATTCAATTATGATCCGTTTTAACCTAAAATGAAAAACAAA
127 CAAACAACCAATTATGATACGTTTTAACCAAAAAT-AAAAACAAA
1155858 TTCACCTTAA
Statistics
Matches: 140, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
173 12 0.09
174 64 0.46
175 56 0.40
177 8 0.06
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (177 bp):
TCAACTTAAAATCATTTATGAGATCATAAAACCATTTAAAGCCGAGTAACTAGACTTTCGAAGAC
ATGAGTGATTATAATGAACTTTTCTTGTGAATGGCAAGCTCTCACCTTATGTTTATGAAGGCAAA
CAACCAATTATGATACGTTTTAACCAAAAATAAAAACAAAAAAAAAC
Found at i:1156538 original size:170 final size:168
Alignment explanation
Indices: 1156055--1159397 Score: 2365
Period size: 170 Copynumber: 19.7 Consensus size: 168
1156045 GTAACATCAT
* * * * * * * * *
1156055 TTTCAAAGGCATGAATGACTATAAATGAAATTTTTTTATCAATGGATAGTTTTTGCTTCACGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * *
1156120 CCCAAGGCAAAC-TCTAATTATGATAT-TTTGTAACCAAAAAAGATAAAAAAATTCAACTTGAAA
66 CCTAAGGCAAACATCCAATTATGATCTATTT-TAACTAAAAATG--AAAAAAATTCAACTTAAAA
* * *
1156183 TAATTTATGAGATTATAAAATCATTTAGAGCAAGTAACTAGGC
128 TCATTTATGAGATTAT-AAACCATTTAAAGC-AGTAACTAGGC
** * * * * *
1156226 TTTTGAAGGCATGAGTGATTATAAATGGACCTTTCCTGTGAATGGA-AGGCTTTCACCTCATGTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATA-GCTTTCGCTTCATGTT
1156290 TCCTAAGGCAAACATCCAATTATGATCTATTTTAAC-AAAAAGTGAAAAAAATTCAACTTAAAAT
65 TCCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAA-TGAAAAAAATTCAACTTAAAAT
*
1156354 CATTTATGAGATTATAAATCATTTAAAGCATGTAACTAGGC
129 CATTTATGAGATTATAAACCATTTAAAGCA-GTAACTAGGC
* ** * *
1156395 TTTCAAAGGCATGAGTGATTAGAAATAAACTTTTCTTGTCAATGGATATCTTTCGCTTCATATTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * *
1156460 TCTAAGGCAAACATCTAATTATGATCTGTTTTAACTAAAAATGAAAAAGAATTCAACTTAAATTC
66 CCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAA-AATTCAACTTAAAATC
* * *
1156525 ATTTATGAGATTATAAAATCATTTACAGCGAGTAATTAGGC
130 ATTTATGAGATTAT-AAACCATTTAAAGC-AGTAACTAGGC
* * * * * **
1156566 TTTCGAAA-GCATGAGTGATTATAAATGGACTTTTCATCTGAATAGAT-GACTTTCACTTCAACT
1 TTTC-AAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAG-CTTTCGCTTCATGT
* * * *
1156629 TTCCTAAGACAAAAATCCAATTATGATCTATTTTAACCT-AAAATAAAAAAAATTCAATTTAAAA
64 TTCCTAAGGCAAACATCCAATTATGATCTATTTTAA-CTAAAAATGAAAAAAATTCAACTTAAAA
* * *
1156693 TCATTTAT-AGAGTTATACAACCACTTGAATAG-TGTAACAAGGC
128 TCATTTATGAGA-TTATA-AACCA-TTTAA-AGCAGTAACTAGGC
* * * * * * ** * *
1156736 CTTCAAAGGAATGAGTGACTATAAATAGACTTTTGTTGCCAACAGAT-GACTTTTGCTTTATGTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAG-CTTTCGCTTCATG-T
* * * * * **
1156800 TTCC-AAGGTAAACAACCAATTATGATCTTTTTTAACCAAAAATAAAAAAAAATTCAACCCAAAA
64 TTCCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAAT-GAAAAAAATTCAACTTAAAA
* * * *
1156864 ACATTTATAAGATTATAAAACCATTTAAAGTAGGTATCTAGGC
128 TCATTTATGAGATTAT-AAACCATTTAAAGCA-GTAACTAGGC
* * * * * *
1156907 TTT-GAAGGCATAAGTAATTATAAAT-GAGCTTTTC----CTAT-GA-AGGCTTTCACTCCATGT
1 TTTCAAAGGCATGAGTGATTATAAATGGA-CTTTTCTTGTCAATGGATA-GCTTTCGCTTCATGT
* ** * * *
1156964 TTCCCAAGTTAAATATCCAATTATGATCTATTTTAACAAAAAATTGAGAAAAATTCAACTTAAAA
64 TTCCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAA-TGAAAAAAATTCAACTTAAAA
*
1157029 TCATTTATGAGATTATAAACCATTTAAAGCAAGTAACTAGGA
128 TCATTTATGAGATTATAAACCATTTAAAGC-AGTAACTAGGC
* * * * * *
1157071 TTTCGAA-GCTATAAGTGATTATAAATAGACTTTTTTTGTCAATGGATGGCTTTCACTTCATGTT
1 TTTCAAAGGC-ATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTT
* ** * * *
1157135 TCCTGAGGCAAACATTTAATTATGATCTATTTTAGCTAAAAATAAAAAATAATTCAACTTAAACT
65 TCCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAA-AATTCAACTTAAAAT
* *
1157200 CATTTATGAGATTATAAAATCATTTATAGCGAGTAACTAGGC
129 CATTTATGAGATTAT-AAACCATTTAAAGC-AGTAACTAGGC
* * * * * * * * * *
1157242 TTTCGAATGTATGAGTGATTATAAATGAAATTCTCTTATGAATGGATGGCTTTCACTTCATGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * *
1157307 CCCT-AGGCAAACGTCTAATTATGATATGTTTTAACGT-AAAAT-AAAAAAATATCAATTTAACA
66 -CCTAAGGCAAACATCCAATTATGATCTATTTTAAC-TAAAAATGAAAAAAAT-TCAACTTAAAA
* * * * *
1157369 TCATTTGTAATATTATACAACCATTTAAATAG-ATTAACAAGGC
128 TCATTTATGAGATTATA-AACCATTT-AA-AGCAGTAACTAGGC
* * ** * * * * *
1157412 TTTCGACGAAATGAGTGACTATAAATGCACTTTTCTTATCAATGGATAGCTTTAGCTTCACGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * *
1157477 -CTAAAGGTAAACAGCCAATTATGATCTATTTTAACAAAAAATGAAAAAACA-TCAACTTAAAAA
66 CCT-AAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAA-ATTCAACTTAAAAT
* *
1157540 CATTTATGAGATTATAAAACTATTTAAAGGGAGTAACTAGGC
129 CATTTATGAGATTAT-AAACCATTTAAA-GCAGTAACTAGGC
* * * * * *
1157582 TTTTC-AAGGCATGAGTGATTATAAATGGACCTTTCCTATGAATGGA-AGGCTTTAGCTTTATGT
1 -TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATA-GCTTTCGCTTCATGT
* * * *
1157645 TTCCTAAAGCAAACATCTAATTATGATCTATTTTAACAAAAAATGAAAAAAATTTAACTTAAAAT
64 TTCCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAACTTAAAAT
* ** *
1157710 CATTTATGAGATTATAAAACATTTAAAGTGTGTAATTAGGC
129 CATTTATGAGATTATAAACCATTTAAAG-CAGTAACTAGGC
* * * * **
1157751 TTTCGAAGGCATGAGTGATTATAAATAGACTTTCCTTGTCAATGGATAGCTTTGGCTTCACATTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * *
1157816 CTTGAGGTAAACATCTAAATATGATCTATTTTAACTAAAAATGAAAAAGAATTCAACTTAAATTC
66 CCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAA-AATTCAACTTAAAATC
* * * *
1157881 ATTTACGAGATTATAAAATCATTTACAGCGAGTAACTAGAC
130 ATTTATGAGATTAT-AAACCATTTAAAGC-AGTAACTAGGC
* * * ** * * * *
1157922 TTTCAAAAGCATGAGTGATTATAAATGGAATTTTCTAGGGAATGGATGGATTTCACTTCATATTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * * *
1157987 ACC-AAGACAAACATCCAATTATAATATGTTTTAACCT-AAAATAAAAAAAATTTTAATTTAAAA
66 -CCTAAGGCAAACATCCAATTATGATCTATTTTAA-CTAAAAATGAAAAAAA-TTCAACTTAAAA
* * * * *
1158050 TCATTTCTGA-AGTTATACAACCACTTAAATCGACTAACAAGGC
128 TCATTTATGAGA-TTATA-AACCATTTAAAGC-AGTAACTAGGC
* * * * * * * *
1158093 TTTCAACGGAATGAGTGACTATAAATGGACTTGTCTTATCAATGGATGGCTTTTGCTTTATGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * *
1158158 CCCAAGGTAAACAACCAATTATAATCTATTTTAAGC-AAAAATAAAAAAAAATTCAACTTAAAAA
66 CCTAAGGCAAACATCCAATTATGATCTATTTTAA-CTAAAAAT-GAAAAAAATTCAACTT-AAAA
* *
1158222 T-ATTTATGAGATTATAAAACTATTTAAACCGAGTAACTAGGC
128 TCATTTATGAGATTAT-AAACCATTTAAAGC-AGTAACTAGGC
* * * * * * * ** ** *
1158264 TCT-GATGGCATAAATGATTATAAATGGACTTTTCCTGTGAATAAAGGGCTTTCACTTCATGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * * * ** *
1158328 CCTGAGACAAACACCCAATAATGATCAATCTTAACAAAAAATGAAAGCAATTCAACTTAAAATTA
66 CCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAACTTAAAATCA
* *
1158393 -TTATGAGATTATAAACCATTCAAAGCGAGTAAGTAGGC
131 TTTATGAGATTATAAACCATTTAAAGC-AGTAACTAGGC
** * * ***
1158431 TTTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTTTTCATGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * * ** * *
1158496 -TTGATGCAAACAAT-TAATTATGGTATGCTTTAACTAAAAATAAAAAATAATTCAACTTAAACT
66 CCTAAGGCAAAC-ATCCAATTATGATCTATTTTAACTAAAAATGAAAAA-AATTCAACTTAAAAT
1158559 CATTTATGAGATTATAAAACCATTTACAATG-AGTAACTAGGC
129 CATTTATGAGATTAT-AAACCATTTA-AA-GCAGTAACTAGGC
* * * * * * * * * * * *
1158601 TTTCAAAAGCATAAGTGATTATAAGTAGATTTTTCTTATGAATTGATACCTTTCACTCCAGGTTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * * * *
1158666 CCCAAGACAAACATCCAATTATAATTTATTTTAACT-TAAATTAAAAAAATTTAATTTAAAATCA
66 CCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAACTTAAAATCA
* * ** * * *
1158730 TTTCT-AAAGTTGCACAACCACTTAAATAG-ACTAACAAGGC
131 TTTATGAGA-TTATA-AACCA-TTTAA-AGCAGTAACTAGGC
** * * * * * * *
1158770 TTTCAAAGTAATAAATGACTATAAATGGAC-TTT-TTGTTAATGGATAGCTTTTGCTTGATATTT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * * * *
1158833 CAC-AAGGTAAACATCCAATTATAATCTATTTTAACCAAAAATGAATAAATTTCAGCTTAAAAAC
66 C-CTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAACTTAAAATC
* * * * *
1158897 ATTAATGACATTATAAAACTATTTAAAGTGAGTACCTAGGC
130 ATTTATGAGATTAT-AAACCATTTAAAG-CAGTAACTAGGC
** * * *** * * *
1158938 TTTTGAAGGGATGAGTGATTATAAATAGACTTTTCTTAAGAATGGATAGCTATCCCTTTATG-TT
1 TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
* * * * ** * * * *
1159002 CCTTGAGGCAAATATCTAATGATGAGATGTTTTAACTTAAAATGAAAAAAAATTCAATTTAAACT
66 CC-TAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATG-AAAAAAATTCAACTTAAAAT
* * **
1159067 CATTTAT-AAAGTTATAAGACCACTTAAAG-AGTGTAAAAAAGGC
129 CATTTATGAGA-TTATAA-ACCATTTAAAGCA--GT-AACTAGGC
* * * * * *
1159110 -TTCTAAAGTCATGAGTGAATATAAATGGACTTTTGTTTTTCAATGGATGGCCTTT-GTTTCATG
1 TTTC-AAAGGCATGAGTGATTATAAATGGACTTTT-CTTGTCAATGGATAG-CTTTCGCTTCATG
* * * *
1159173 TTTCC-AGAGGCAGACATCCAATGATGATCTGTTTTAA-TCAAAAATGAAAAATAATTCATCTTA
63 TTTCCTA-AGGCAAACATCCAATTATGATCTATTTTAACT-AAAAATGAAAAA-AATTCAACTTA
* ** * *
1159236 AAATCATTTAT-AAAGTTATAAAACCACTGAAATAG-ACTAACAAGGC
125 AAATCATTTATGAGA-TTAT-AAACCA-TTTAA-AGCAGTAACTAGGC
* * * * * * *
1159282 TTTCGAAGGCAT-ATGTGACTATAAATTGATTTTTCTAGTCAATGGAT-GACTTTTGCTTCACGT
1 TTTCAAAGGCATGA-GTGATTATAAATGGACTTTTCTTGTCAATGGATAG-CTTTCGCTTCATGT
* * ** *
1159345 TTCTCT-ATGTAAACATTTAATT-TAGATCTTTTTTAA-TCAAAAATGAAAAAAAT
64 TTC-CTAAGGCAAACATCCAATTAT-GATCTATTTTAACT-AAAAATGAAAAAAAT
1159398 GATTATAAAT
Statistics
Matches: 2509, Mismatches: 538, Indels: 251
0.76 0.16 0.08
Matches are distributed among these distances:
164 31 0.01
165 98 0.04
166 8 0.00
167 107 0.04
168 158 0.06
169 347 0.14
170 814 0.32
171 725 0.29
172 123 0.05
173 84 0.03
174 11 0.00
175 3 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (168 bp):
TTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTT
CCTAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAATTCAACTTAAAATCA
TTTATGAGATTATAAACCATTTAAAGCAGTAACTAGGC
Found at i:1156580 original size:340 final size:338
Alignment explanation
Indices: 1156055--1159316 Score: 2763
Period size: 340 Copynumber: 9.6 Consensus size: 338
1156045 GTAACATCAT
* * * * * *
1156055 TTTCAAAGGCATGAATGACTATAAAT-GAAATTTTTTTATCAATGGATAGTTTTTGCTTCACGTT
1 TTTCAAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTT
* * * * * *
1156119 TCCCAAGGCAAAC-TCTAATTATGATAT-TTTGTAACCAAAAAAGATAAAAAAATTCAACTTGAA
65 TTCCAAGGCAAACATCCAATTATGATCTATTT-TAACTAAAAATGA-AAAAAAATTCAACTTAAA
* * * *
1156182 ATAATTTATGAGATTATAAAATCATTTAGAGCAAGTAACTAGGCTTTTGAAGGCATGAGTGATTA
128 ATCATTTATGAGATTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTA
* * * *
1156247 TAAATGGACCTTTCCTGTGAATGGAAGGCTTTCACCTCATGTTTCCTAAGGCAAACATCCAATTA
193 TAAATGGACTTTTCCTATGAATGGAAGGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATTA
* * *
1156312 TGATCTATTTTAACAAAAAGTGAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAATCATT
258 TGATCTATTTTAACTAAAA-TGAAAAAAATTCAATTTAAAATCATTTATGAGATTATAAACCATT
*
1156377 TAAAGCATGTAACTAGGC
322 TAAAG-ATGTAACAAGGC
* * * * * *
1156395 TTTCAAAGGCATGAGTGATTAGAAATAAACTTTTCTTGTCAATGGATATCTTTCGCTTCATATTT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
* * * * *
1156460 TCTAAGGCAAACATCTAATTATGATCTGTTTTAACTAAAAATGAAAAAGAATTCAACTTAAATTC
66 TCCAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATC
* * *
1156525 ATTTATGAGATTATAAAATCATTTACAGCGAGTAATTAGGCTTTCGAAAGCATGAGTGATTATAA
131 ATTTATGAGATTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTATAA
* * * * * ** *
1156590 ATGGACTTTTCATCTGAATAGATGACTTTCACTTCAACTTTCCTAAGACAAAAATCCAATTATGA
196 ATGGACTTTTCCTATGAATGGAAGGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATTATGA
*
1156655 TCTATTTTAACCTAAAATAAAAAAAATTCAATTTAAAATCATTTAT-AGAGTTATACAACCACTT
261 TCTATTTTAA-CTAAAATGAAAAAAATTCAATTTAAAATCATTTATGAGA-TTATA-AACCA-TT
*
1156719 GAATAG-TGTAACAAGGC
322 TAA-AGATGTAACAAGGC
* * * * ** *
1156736 CTTCAAAGGAATGAGTGACTATAAATAGACTTTTGTTGCCAACAGAT-GACTTTTGCTTTATGTT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAG-CTTTTGCTTCATGTT
* * * * * ** *
1156800 TTCCAAGGTAAACAACCAATTATGATCTTTTTTAACCAAAAATAAAAAAAAATTCAACCCAAAAA
65 TTCCAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAAT
* * * * * *
1156865 CATTTATAAGATTATAAAACCATTTAAAG-TAGGTATCTAGGCTTT-GAAGGCATAAGTAATTAT
130 CATTTATGAGATTATAAAATCATTTAAAGCGA-GTAACTAGGCTTTCGAAGGCATGAGTGATTAT
* * ** *
1156928 AAAT-GAGCTTTTCC--T--AT-GAAGGCTTTCACTCCATGTTTCCCAAGTTAAATATCCAATTA
194 AAATGGA-CTTTTCCTATGAATGGAAGGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATTA
* * *
1156987 TGATCTATTTTAACAAAAAATTGAGAAAAATTCAACTTAAAATCATTTATGAGATTATAAACCAT
258 TGATCTATTTTAAC-TAAAA-TGAAAAAAATTCAATTTAAAATCATTTATGAGATTATAAACCAT
* * *
1157052 TTAAAGCAAGTAACTAGGA
321 TTAAAG-ATGTAACAAGGC
* * * * * **
1157071 TTTCGAA-GCTATAAGTGATTATAAATAGACTTTTTTTGTCAATGGATGGCTTTCACTTCATG-T
1 TTTCAAAGGC-ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTT
* ** *
1157134 TTCCTGAGGCAAACATTTAATTATGATCTATTTTAGCTAAAAAT-AAAAAATAATTCAACTTAAA
65 TTCC-AAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAA-AATTCAACTTAAA
* * * *
1157198 CTCATTTATGAGATTATAAAATCATTTATAGCGAGTAACTAGGCTTTCGAATGTATGAGTGATTA
128 ATCATTTATGAGATTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTA
* * * * * * * *
1157263 TAAATGAAATTCTCTTATGAATGGATGGCTTTCACTTCATGTTTCCCT-AGGCAAACGTCTAATT
193 TAAATGGACTTTTCCTATGAATGGAAGGCTTTCACTTCATGTTT-CCTAAGACAAACATCCAATT
* * * * * *
1157327 ATGATATGTTTTAACGTAAAAT-AAAAAAATATCAATTTAACATCATTTGTAATATTATACAACC
257 ATGATCTATTTTAAC-TAAAATGAAAAAAAT-TCAATTTAAAATCATTTATGAGATTATA-AACC
1157391 ATTTAAATAGAT-TAACAAGGC
319 ATTT-AA-AGATGTAACAAGGC
* * ** * * *
1157412 TTTCGACGAAATGAGTGACTATAAAT-GCACTTTTCTTATCAATGGATAGCTTTAGCTTCACG-T
1 TTTCAAAGGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTT
* * * * *
1157475 TTCTAAAGGTAAACAGCCAATTATGATCTATTTTAACAAAAAATGAAAAAACA-TCAACTTAAAA
65 TTC-CAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAA
* *
1157539 ACATTTATGAGATTATAAAA-CTATTTAAAGGGAGTAACTAGGCTTTTC-AAGGCATGAGTGATT
129 TCATTTATGAGATTATAAAATC-ATTTAAAGCGAGTAACTAGGC-TTTCGAAGGCATGAGTGATT
* * *
1157602 ATAAATGGACCTTTCCTATGAATGGAAGGCTTT-AGCTTTATGTTTCCTAA-AGCAAACATCTAA
192 ATAAATGGACTTTTCCTATGAATGGAAGGCTTTCA-CTTCATGTTTCCTAAGA-CAAACATCCAA
* * * *
1157665 TTATGATCTATTTTAACAAAAAATGAAAAAAATTTAACTTAAAATCATTTATGAGATTATAAAAC
255 TTATGATCTATTTTAAC-TAAAATGAAAAAAATTCAATTTAAAATCATTTATGAGATTATAAACC
* **
1157730 ATTTAAAGTGTGTAATTAGGC
319 ATTTAAAG-ATGTAACAAGGC
* * * * **
1157751 TTTCGAAGGCATGAGTGATTATAAATAGACTTTCCTTGTCAATGGATAGCTTTGGCTTCA-CATT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
** * * * * *
1157815 TCTTGAGGTAAACATCTAAATATGATCTATTTTAACTAAAAATGAAAAAGAATTCAACTTAAATT
66 TC-CAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAAT
* * * * *
1157880 CATTTACGAGATTATAAAATCATTTACAGCGAGTAACTAGACTTTCAAAAGCATGAGTGATTATA
130 CATTTATGAGATTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTATA
* * * * *
1157945 AATGGAATTTT-CTAGGGAATGGATGGATTTCACTTCATATTTACC-AAGACAAACATCCAATTA
195 AATGGACTTTTCCTA-TGAATGGAAGGCTTTCACTTCATGTTT-CCTAAGACAAACATCCAATTA
* * * * * *
1158008 TAATATGTTTTAACCTAAAATAAAAAAAATTTTAATTTAAAATCATTTCTGA-AGTTATACAACC
258 TGATCTATTTTAA-CTAAAATGAAAAAAA-TTCAATTTAAAATCATTTATGAGA-TTATA-AACC
* *
1158072 ACTTAAATCGA-CTAACAAGGC
319 ATTTAAA--GATGTAACAAGGC
* * * * * * *
1158093 TTTCAACGGAATGAGTGACTATAAATGGACTTGTCTTATCAATGGATGGCTTTTGCTTTATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
* * * * *
1158158 CCCAAGGTAAACAACCAATTATAATCTATTTTAAGC-AAAAATAAAAAAAAATTCAACTTAAAAA
66 TCCAAGGCAAACATCCAATTATGATCTATTTTAA-CTAAAAATGAAAAAAAATTCAACTT-AAAA
* * * * *
1158222 T-ATTTATGAGATTATAAAA-CTATTTAAACCGAGTAACTAGGCTCT-GATGGCATAAATGATTA
129 TCATTTATGAGATTATAAAATC-ATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTA
* * * * *
1158284 TAAATGGACTTTTCCTGTGAAT-AAAGGGCTTTCACTTCATGTTTCCTGAGACAAACACCCAATA
193 TAAATGGACTTTTCCTATGAATGGAA-GGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATT
* * * ** * *
1158348 ATGATCAATCTTAACAAAAAATGAAAGCAATTCAACTTAAAATTA-TTATGAGATTATAAACCAT
257 ATGATCTATTTTAAC-TAAAATGAAAAAAATTCAATTTAAAATCATTTATGAGATTATAAACCAT
* **
1158412 TCAAAGCGA-GTAAGTAGGC
321 TTAAA--GATGTAACAAGGC
** * * **
1158431 TTTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTTTTCATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
** * * * * ** *
1158496 T-TGATGCAAACAAT-TAATTATGGTATGCTTTAACTAAAAAT-AAAAAATAATTCAACTTAAAC
66 TCCAAGGCAAAC-ATCCAATTATGATCTATTTTAACTAAAAATGAAAAAA-AATTCAACTTAAAA
* * * * *
1158558 TCATTTATGAGATTATAAAACCATTTACAA-TGAGTAACTAGGCTTTCAAAAGCATAAGTGATTA
129 TCATTTATGAGATTATAAAATCATTTA-AAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTA
* * * * * * * * *
1158622 TAAGTAGATTTTTCTTATGAATTGATA-CCTTTCACTCCAGGTTTCCCAAGACAAACATCCAATT
193 TAAATGGACTTTTCCTATGAATGGA-AGGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATT
* * * * * * * **
1158686 ATAATTTATTTTAACTTAAATTAAAAAAATTTAATTTAAAATCATTTCT-AAAGTTGCACAACCA
257 ATGATCTATTTTAACTAAAATGAAAAAAATTCAATTTAAAATCATTTATGAGA-TTATA-AACCA
* *
1158750 CTTAAATAGA-CTAACAAGGC
320 -TTTAA-AGATGTAACAAGGC
** * * * * * *
1158770 TTTCAAAGTAATAAATGACTATAAATGGAC-TTT-TTGTTAATGGATAGCTTTTGCTTGAT-ATT
1 TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
* * * * * * *
1158832 TCACAAGGTAAACATCCAATTATAATCTATTTTAACCAAAAATG-AATAAATTTCAGCTTAAAAA
66 TC-CAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAAT
* * * * * *
1158896 CATTAATGACATTATAAAA-CTATTTAAAGTGAGTACCTAGGCTTTTGAAGGGATGAGTGATTAT
130 CATTTATGAGATTATAAAATC-ATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTAT
* * * * * * * * * * *
1158960 AAATAGACTTTTCTTAAGAATGGATA-GCTATCCCTTTATG-TTCCTTGAGGCAAATATCTAATG
194 AAATGGACTTTTCCTATGAATGGA-AGGCTTTCACTTCATGTTTCC-TAAGACAAACATCCAATT
** * * *
1159023 ATGAGATGTTTTAACTTAAAATGAAAAAAAATTCAATTTAAACTCATTTAT-AAAGTTATAAGAC
257 ATGATCTATTTTAAC-TAAAATG-AAAAAAATTCAATTTAAAATCATTTATGAGA-TTATAA-AC
* *
1159087 CACTTAAAGAGTGTAAAAAAGGC
318 CATTTAAAGA-TGT-AACAAGGC
* * * * * * * *
1159110 -TTCTAAAGTCATGAGTGAATATAAATGGACTTTTGTTTTTCAATGGATGGCCTTTGTTTCATG-
1 TTTC-AAAGGCATGAGTGACTATAAATAGACTTTT-CTTGTCAATGGATAGCTTTTGCTTCATGT
* * * * *
1159173 TTTCCAGAGGCAGACATCCAATGATGATCTGTTTTAA-TCAAAAATGAAAAATAATTCATCTTAA
64 TTTCCA-AGGCAAACATCCAATTATGATCTATTTTAACT-AAAAATGAAAAAAAATTCAACTTAA
* * * * ** * *
1159237 AATCATTTAT-AAAGTTATAAAACCACTGAAATAGACTAACAAGGCTTTCGAAGGCAT-ATGTGA
127 AATCATTTATGAGA-TTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGA-GTGA
* * *
1159300 CTATAAATTGATTTTTC
190 TTATAAATGGACTTTTC
1159317 TAGTCAATGG
Statistics
Matches: 2340, Mismatches: 475, Indels: 210
0.77 0.16 0.07
Matches are distributed among these distances:
333 2 0.00
334 17 0.01
335 189 0.08
336 78 0.03
337 242 0.10
338 201 0.09
339 221 0.09
340 620 0.26
341 455 0.19
342 171 0.07
343 71 0.03
344 72 0.03
345 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (338 bp):
TTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTT
TCCAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATC
ATTTATGAGATTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCGAAGGCATGAGTGATTATAA
ATGGACTTTTCCTATGAATGGAAGGCTTTCACTTCATGTTTCCTAAGACAAACATCCAATTATGA
TCTATTTTAACTAAAATGAAAAAAATTCAATTTAAAATCATTTATGAGATTATAAACCATTTAAA
GATGTAACAAGGC
Found at i:1159851 original size:169 final size:169
Alignment explanation
Indices: 1159426--1160155 Score: 492
Period size: 169 Copynumber: 4.3 Consensus size: 169
1159416 TTGCTCATGA
* * *
1159426 AAAAAATAAAA-AGGAATTCAACTTAAACTCATTTATGAGATTATAAAACCATTTACAG-TGAGT
1 AAAAAATAAAATA--AATTCAACTTAAAATCATTTATGAGATTAT-AAACCATTTAAAGCAG-GT
*** * * * * * *
1159489 AACTAGGCTTTT-GAAAATATGAATGATTATAAATATAATTTTCTTATGAATTGATGGCTTTCAC
62 AACTA-GCTTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGTTTTCAC
* * *
1159553 TTCATGTTT-CT-CGAG-AAA-AATGTCCAATTATGATATGTTTTAAC
126 TTCATGTTTCCTAAG-GCAAACAA--T-CAATTATGATATATTTTAAT
** * ** * * * * **
1159597 CTAAAATAAAAAAAATT-ATTTTAAAATCATTTCT-AAACTTATACAAGCAATTAAA-CAAACTA
1 AAAAAATAAAATAAATTCAACTTAAAATCATTTATGAGA-TTATA-AACCATTTAAAGC-AGGTA
* * * ** * * * **
1159659 ACAAGGC-TTTCAAAGGAATGAGTGACAATAAATAGATTTTTCTTGTCAATGGATGATTTTTGCT
63 ACTA-GCTTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGTTTTCACT
* ** *
1159723 TCGTGTTTCGC-AAGGGTAACAATGAATTATGATATATTTTAACT
127 TCATGTTTC-CTAAGGCAAACAATCAATTATGATATATTTTAA-T
* * **
1159767 -GAAAATGAAA-AAATTCAACTTAAAAGT-ATTTATGAGATTATAAAACCATTTAAAGTGGGTAA
1 AAAAAATAAAATAAATTCAACTTAAAA-TCATTTATGAGATTAT-AAACCATTTAAAGCAGGTAA
* * * *
1159829 CTAGACTTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCCTATAAATGGAAGGCTTTCACTT
64 CTAG-CTTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGTTTTCACTT
* * * * *
1159893 CATGTTTCCTGAGGCAAACATTCAGTTATGATTTGTTTTAAT
128 CATGTTTCCTAAGGCAAACAATCAATTATGATATATTTTAAT
* * *
1159935 AAAAAATAAAATAAATTTAACTTAAAATCATTTATGAGATTATAAACCATTTAAAGCATGTAATT
1 AAAAAATAAAATAAATTCAACTTAAAATCATTTATGAGATTATAAACCATTTAAAGCAGGTAACT
* * * *
1160000 AGCTTTTCGAAGGCGTGAGTGATTATGAATAGACTTTTCTTATCAATGGATGGTTTTCTCTTCAC
66 AGCTTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGTTTTCACTTCAT
* * * * * *
1160065 GTTTCTTGAGGCAAAC-ATCTAGTTATGATCTGTTTTAAC
131 GTTTCCTAAGGCAAACAATC-AATTATGATATATTTTAAT
* * *
1160104 ACAAAATGAAAA-AAAATCAAC-TAAAACTTATTTATGATG-TTATAAAACCATT
1 AAAAAAT-AAAATAAATTCAACTTAAAA-TCATTTATGA-GATTAT-AAACCATT
1160156 GTAACACCCT
Statistics
Matches: 436, Mismatches: 94, Indels: 59
0.74 0.16 0.10
Matches are distributed among these distances:
168 26 0.06
169 340 0.78
170 54 0.12
171 13 0.03
172 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (169 bp):
AAAAAATAAAATAAATTCAACTTAAAATCATTTATGAGATTATAAACCATTTAAAGCAGGTAACT
AGCTTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGTTTTCACTTCAT
GTTTCCTAAGGCAAACAATCAATTATGATATATTTTAAT
Found at i:1160093 original size:338 final size:339
Alignment explanation
Indices: 1159440--1160155 Score: 747
Period size: 338 Copynumber: 2.1 Consensus size: 339
1159430 AATAAAAAGG
* *
1159440 AATTCAACTT-AAACTCATTTATGAGATTATAAAACCATTTACAGTGAGTAACTAGGCTTTTGAA
1 AATTCAACTTAAAACT-ATTTATGAGATTATAAAACCATTTAAAGTGAGTAACTAGACTTTTGAA
* * * * * *
1159504 AATATGAATGATTATAAATATAATTTTCTTATGAATTGATGGCTTTCACTTCATGTTTCTCGAGA
65 AACATGAATGATTATAAATAGAATTTTCCTATAAATGGAAGGCTTTCACTTCATGTTTCTCGAGA
** ** *
1159569 AAAATGTCCAATTATGATATGTTTTAACCTAAAATAAAAAAAATTATTTTAAAATCATTTCTAAA
130 AAAATGTCCAATTATGATATGTTTTAACAAAAAATAAAAAAAATTAACTTAAAATCATTTATAAA
* *
1159634 CTTATACAAGCAATTAAACAAACTAACAAGGCTTTCAAAGGAATGAGTGACAATAAATAGATTTT
195 CTTATACAACCAATTAAACAAACTAACAAGGCTTTCAAAGGAATGAGTGACAATAAATAGACTTT
* ** **
1159699 TCTTGTCAATGGATGATTTTTGCTTCGTGTTTCGCAAGGGTAACAATGAATTATGATATATTTTA
260 TCTTATCAATGGATGATTTTTGCTTCACGTTTCGCAAGGCAAACAATGAATTATGATATATTTTA
**
1159764 ACTGAAAATG-AAAA
325 ACACAAAATGAAAAA
* * *
1159778 AATTCAACTTAAAAGTATTTATGAGATTATAAAACCATTTAAAGTGGGTAACTAGACTTTTGAAG
1 AATTCAACTTAAAACTATTTATGAGATTATAAAACCATTTAAAGTGAGTAACTAGACTTTTGAAA
* * *
1159843 GCATGAGTGATTATAAATAGACTTTTCCTATAAATGGAAGGCTTTCACTTCATGTTTC-CTGAGG
66 ACATGAATGATTATAAATAGAATTTTCCTATAAATGGAAGGCTTTCACTTCATGTTTCTC-GA-G
* * * * *
1159907 CAAACAT-T-CAGTTATGATTTGTTTTAATAAAAAATAAAATAAATTTAACTTAAAATCATTTAT
129 -AAAAATGTCCAATTATGATATGTTTTAACAAAAAATAAAA-AAAATTAACTTAAAATCATTTAT
* * ** ** * ** ** *
1159970 GAGA-TTATA-AACCATTTAAAGC-ATGTAATTA-GCTTTTCGAAGGCGTGAGTGATTATGAATA
192 -AAACTTATACAACCAATTAAA-CAAACTAACAAGGC-TTTCAAAGGAATGAGTGACAATAAATA
* *** * *
1160031 GACTTTTCTTATCAATGGATGGTTTTCT-CTTCACGTTTCTTGAGGCAAAC-ATCTAGTTATGAT
254 GACTTTTCTTATCAATGGATGATTTT-TGCTTCACGTTTCGCAAGGCAAACAAT-GAATTATGAT
* *
1160094 CTGTTTTAACACAAAATGAAAAA
317 ATATTTTAACACAAAATGAAAAA
*
1160117 AAATCAAC-TAAAACTTATTTATGATG-TTATAAAACCATT
1 AATTCAACTTAAAAC-TATTTATGA-GATTATAAAACCATT
1160156 GTAACACCCT
Statistics
Matches: 310, Mismatches: 55, Indels: 25
0.79 0.14 0.06
Matches are distributed among these distances:
337 5 0.02
338 232 0.75
339 65 0.21
340 8 0.03
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (339 bp):
AATTCAACTTAAAACTATTTATGAGATTATAAAACCATTTAAAGTGAGTAACTAGACTTTTGAAA
ACATGAATGATTATAAATAGAATTTTCCTATAAATGGAAGGCTTTCACTTCATGTTTCTCGAGAA
AAATGTCCAATTATGATATGTTTTAACAAAAAATAAAAAAAATTAACTTAAAATCATTTATAAAC
TTATACAACCAATTAAACAAACTAACAAGGCTTTCAAAGGAATGAGTGACAATAAATAGACTTTT
CTTATCAATGGATGATTTTTGCTTCACGTTTCGCAAGGCAAACAATGAATTATGATATATTTTAA
CACAAAATGAAAAA
Found at i:1160449 original size:11 final size:11
Alignment explanation
Indices: 1160435--1160464 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
1160425 AATAATATTT
1160435 TATTAATAAAA
1 TATTAATAAAA
*
1160446 TATTATTAAAA
1 TATTAATAAAA
1160457 TATTAATA
1 TATTAATA
1160465 TTTTATCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:1167843 original size:8 final size:8
Alignment explanation
Indices: 1167820--1167861 Score: 66
Period size: 8 Copynumber: 5.1 Consensus size: 8
1167810 GAATCGGGTT
1167820 GGAAGCAAA
1 GGAAG-AAA
*
1167829 GGGAGAAA
1 GGAAGAAA
1167837 GGAAGAAA
1 GGAAGAAA
1167845 GGAAGAAA
1 GGAAGAAA
1167853 GGAAGAAA
1 GGAAGAAA
1167861 G
1 G
1167862 AAGTAAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 27 0.87
9 4 0.13
ACGTcount: A:0.57, C:0.02, G:0.40, T:0.00
Consensus pattern (8 bp):
GGAAGAAA
Found at i:1174373 original size:169 final size:169
Alignment explanation
Indices: 1173946--1181564 Score: 4397
Period size: 170 Copynumber: 45.1 Consensus size: 169
1173936 CATTTACGAC
* * * * * * *
1173946 GAGTAACTAGGCTTTTAAAAGCATTAGTGATTATAAATGGACTTTTC-AAGTTAATGGATGGCAT
1 GAGTAACTAGGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTA-TCAATGGATGGCTT
* * * * * * * *
1174010 TCACTTCAAGTTTAAC-AAGACAAACATCCAATTTTGAACTATTTTAACCTAAAATAAAAAAAAA
64 TCACTTCACGTTT-CCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-GAAAAAAA
* * * * *
1174074 TT-AATTTAAAATCATTT-TTAAAGTTATACAACCACTTAAA-T
127 TTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * * ** * * *
1174115 AGACTAACAAGGCTTTCAAAGGAATAAGAGACCATAAATGGACTTTTCTTGTTAATGGATGGCTT
1 -GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
** * * * * * * *
1174180 TTGCATAACG-TTCCCAAAGTAAACATCAAATTATGATCTTTTTTAACCAAAAATGAAAAAAATT
64 TCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* *
1174244 CAACTTAAAAAT-ATTTTTGAGATTGTAAAACCATTTAAAGT
129 CAACTT-AAAATCATTTATGAGATTATAAAACCATTTAAAGT
* ** * * ** **
1174285 GGGTAACTAGGCTTTGAAGGTGTGAGTGATTATAAATAAACTTTACTTATGGATGGAAAGCTTTC
1 GAGTAACTAGGCTTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTTC
* * * * *
1174350 ACTTCACGTTTCCTAAGGTAAACATCCAATTATAATCTGTTTTAACAAAAAATAAAAAAAATTAA
66 ACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCA
1174415 ACTTAAAATCATTTATGAGATTAT-AAACCATTTGAAA--
131 ACTTAAAATCATTTATGAGATTATAAAACCATTT-AAAGT
* * * ** * * * * *
1174452 CATGTAACAAGACATTCAAAGGCGTAAGTGATTATAAATAGACTTTTCTTGTCAATAGATGGTTT
1 GA-GTAACTAGGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
* * * ** ** * * * *
1174517 TCACTACACATTTTCTAAGATAAAACATTTAATTATGATTTATTTTAACTAAAAATAAAAAAAAT
64 TCACTTCACGTTTCCTAAG-GCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAT
* * * *
1174582 TGAACTTAAACTCATCTATGAGATTATAAAACCATTTATAGT
128 TCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * *
1174624 GAGTAACTAGGCTTTCAAAAGCATAAGTGATTATAAATGGACTTTTCTTGTGAATGGATGGCTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* ** * *
1174689 CACTT-ATTGTTTCCTAAAACAAACATCTAATTATGATCTGTTTTAACCTAAAAT-AAAAAAATT
65 CACTTCA-CGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * * * *
1174752 TAAGTTAAAATCATTTCT-AAAGTTATACAACCACTTAAA-T
129 CAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * * * *
1174792 -AGGCAAACAAGGCTTTCGAAGGAAAGAGTGACTATATATTGATTTTTCTTATCAATGGATGGCT
1 GA-G-TAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGC-
* * * *
1174856 TTTC-CTTCACATTTCCCAAGGTC-AACATCCAATTATGATCTATTTTAACCAAAAATGAAAAGA
62 TTTCACTTCACGTTTCCTAAGG-CAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * *
1174919 ATTCAACTTAAAAACATTTATGAGATTATAAACCCATTTAAAGC
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * *
1174963 GGGTAACTAGGCTTT-AATGACATGAGTGATTATAAATAGACTTTTCTTATAAATGGAAGGCTTT
1 GAGTAACTAGGCTTTGAA-GGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * * *
1175027 CACTTCATGTTTCTTGAGGCAAACATCCAACTATGATTTGTTTTAACAAAAAATGAAAAAAATTT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTC
* *
1175092 AGCTTGAAATCATTTATGAGATTAT-AAACCATTTAAAGT
130 AACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
** * * *
1175131 GAGTAACTAGGCTTTCGAAGATATAAGTGATTATAAATAGACTTTTCTTGTCAATGGATGACTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
** * ** * * * * * * *
1175196 TGCTTCACATTTTTTGAGGGAAACA-CTTAATTATGCTATGTTTTAATCAAAAATAAAAAAAATT
65 CACTTCACGTTTCCTAAGGCAAACATC-CAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * * * *
1175260 AAACTTTAACTCATTTATGAGATTACAAAACCATTTACAGC
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * *
1175301 GAGTAACTAGGTTTTGAAAGCTTGAGTGATTATAAAT-GAAATTTTCTTGTGAATGGATAGCTTT
1 GAGTAACTAGGCTTTGAAGGCATGAGTGATTATAAATAG-ACTTTTCTTATCAATGGATGGCTTT
* ** * * * * * * * *
1175365 CATTTCTTGTTTCTTGAGCCAAACCTCCAATTATGATTTGTTTTAACCTAAACT-AAAAAAAATC
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTC
* * * * *
1175429 AATTTAAAATCATTTCT-AAATTTATACAACCACTTAAA-T
130 AACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * *
1175468 AGACTAA-TAAGGCTTTCAGAA-GAATGAGTAATTATAAATGGACTTTTCTTATCAATGGATGGC
1 -GAGTAACT-AGGCTTT--GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGC
* * * * * * * *
1175531 TTTTACTTCATGTTTCCCCAA-GTAAACATCCAATTATGATATATTTTAAGCAAACATGAAAAAA
62 TTTCACTTCACGTTT-CCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA
* * * *
1175595 ATTCAACTTAAAAACATTTAGGAGATTATAAAACCTTTTAAAGC
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * *
1175639 GAGTAATTAGGCTTTTAAAGGTATGAGTGATTATAAATGAAACTTTT-TTATTAATGAATGGCTT
1 GAGTAACTAGGC-TTTGAAGGCATGAGTGATTATAAAT-AGACTTTTCTTATCAATGGATGGCTT
* * * * * **
1175703 TCCCTTCATG-TTCCTCGAGGCAAACATCCAAGTATGATCTGTTTTAGCCTTAAATGAAAAAAAT
64 TCACTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG-AAAAAA-
* * * * * *
1175767 ATTCAATTTAAACTCATTCA-GAAACTTATAAAACCACTTAAGGT
126 ATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* ** * * * *
1175811 GAGTAA-AAGGCATTCAAAGTCAAT-AGTGAATATAAATGGAC-TTTCTTGTCAATGGATGGCCT
1 GAGTAACTAGGC-TTTGAAGGC-ATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGG-CT
* * * * *
1175873 TT-ACATT-ACATTT-TTAGAGGCAAACATCCAATGATGATATGTTTTAACAAAAAATGAAAAAC
63 TTCAC-TTCACGTTTCCTA-AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA-
* * * * * *
1175935 AATTCATCTTAAAATTATTTAT-AAAGTTATAGAACTACTTAAA-T
125 AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * * *
1175979 AAACTAA-TAAGGTTTTCGAAGGCATGATTGACTATAAATGGACTTTTTTTTATCAATGGATGGC
1 -GAGTAACT-AGGCTTT-GAAGGCATGAGTGATTATAAATAGAC-TTTTCTTATCAATGGATGGC
** * * * *
1176043 TTTTGCTTCACGTTT-CTCAAGGTAAACATCCAATT-TAAATCTTTTTTCACCAAAAATGAAAAA
62 TTTCACTTCACGTTTCCT-AAGGCAAACATCCAATTAT-GATCTGTTTTAACCAAAAATGAAAAA
** * * * *
1176106 AAGTTCAACTTTCAATCATATATGAGATCATAGAACCATTTAAAGC
125 AA-TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * *
1176152 GAGTAAGTAGTCTTTAGAAGGCATAAGTGATTATAAATGGACTTTTCTTATGAATGGA-GTCTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * *
1176216 CACTTCACATTTCCCAAGGAAAACATCCAAATATGATATGTTTTAACAAAAAATGAAAAACAATT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATT
* * * * * *
1176281 CAACTTAAAATTATATATTAAATTATAAAACTATTTAAAAT
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * **
1176322 CG-GTAACTAGCCTTTCAAAGGCATGATTGATTATAAATACAC-TTTCTTGTGAATGGAAAAG--
1 -GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGG-ATGGCT
* * ** * *
1176383 -T--CTTCACGTTTCATGAGGCAAACAAT-CAATTATGATCTGTTTTAACTTAGAATTAAAAAAA
63 TTCACTTCACGTTTCCTAAGGCAAAC-ATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * * * *
1176444 TTCACCTTAAAAACATTTAT-AAAGTTATAAAACCACTAAAAGT
127 TTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * ** * * * * *
1176487 GACTAACAAGGCATTCAAAGGCATGAGTGACTATAAGTGGACCTTTCTTATTAATGGATGGCTTT
1 GAGTAACTAGGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * **
1176552 CCCTTTATGTTCCCTAAGGCAAACATCCTATTATGATCTGTTTTAACCTTAAATGAATAAAAATT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAA-AAAAATT
* * * * * * *
1176617 TAATTTAAACTCATTTAT-AAAGTTATAAAATCACTTAAGGT
129 CAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * * *
1176658 GAGTAA-AAGGGCTTTTAAAGTCATAAGCGAATATAAAT-TACTTTTCTTATCAATGGATGGCTT
1 GAGTAACTA-GGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
** * *
1176721 TTGCTTCACGTTTCAC-AAGGGAAATATCCAA-TATGATCCT-TTTTAACCAAAAAT-AAAAATA
64 TCACTTCACGTTTC-CTAAGGCAAACATCCAATTATGAT-CTGTTTTAACCAAAAATGAAAAA-A
* * * * * *
1176782 TTTCAACTTAAAATCATTTGTTAAATTATAAAGCCATTTAAAGC
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * *
1176826 GGGTAACTAGGCTTTTGAAGGCATGAGTGATTATAAATAGACTTTTCCTATGAATGGAAGGCTTT
1 GAGTAACTAGGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * ** * * *
1176891 CATTTCACATTTTTTAAGGCAAACATCCAATTATGATATGTTTTAA-TAAACAATAAAAAAAATT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAA-AATGAAAAAAATT
* * *
1176955 CAACTTAAAACCATTTATAAGATTAT-AAACCATTTAAACCT
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAAA-GT
* * * * * *
1176996 -AGTAACCAGGCTTTCAAAGGCATAAGTGATTATAAATAGACTTTTCCTGTCAATGGATGACTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * ** * * *
1177060 CGCTT---G---AC--A---AAACATTTAATTAAGATTTGTTTTAGCCAAAAAT-AAAAAAGAGT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA-A-T
* * *
1177113 TCAACTTAAACTCATTTATGAGATTGTAAAACCATTTATAGT
128 TCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * * * * *
1177155 GAGTAACTAGGCTTTCGAA-ACTATAAGTTAGT-TAAATACAATTTTTTTGTGAATGGATGACTT
1 GAGTAACTAGGCTTT-GAAGGC-ATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
** ** * *
1177218 TCACTTCTTGTTTCCTAAAACAAACATCCAATTATGATCTATTTTAACCTAAAAT-AAAAAAATT
64 TCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * * * *
1177282 TAATTTAAAATCATTTCT-AAAGTTATACAACCACTTAAA-T
129 CAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* ** * * * *
1177322 -AGGCCT-ACAAGGCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTT-GCTGATGGATGG
1 GA-G--TAACTAGGC-TTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATC-AATGGATGG
** * * * * * *
1177384 CTTTTGCTTCACGTTTTCTAAGGTAAACATTCAATTATGATCTATTTTAATCAAAAATGAAAAGG
61 CTTTCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAA-A
* *
1177449 AATTCAAGTTAAAAAT-ATTTATGAGATTATAAAACCATTCAAAGT
125 AATTCAACTT-AAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * *
1177494 GAGTAACTAGGCTATCGAAGGCATCAGTGATTATAAATAGACTTTTCTTATTAATGGATGGCTTT
1 GAGTAACTAGGCT-TTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * *
1177559 CCCTTCATGTTTTCTAAGGCAAACAACCAACTATGATCTGTTTTAACCTAAAATGAAAAAGAA-T
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA-AATT
* * * * * * *
1177623 CCATTTAAACTCATTTATAAGCTTATAAAAGCA-TTAAGGGT
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAA-AGT
* ** * * * * * ** * **
1177664 AAGTAAAAAGGATTTCAAAGTCATAAGCGAACATAAATGGACTTTTCTTAAAAATGGATGGCTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
** * * * * *
1177729 TGCTTCATGTTT-TTCAAGGC-AACATCCAATTATGATATGTTTTAACTAGAAATAGAAAAAAAA
65 CACTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-G-AAAAAAA
* * * * * *
1177792 TTTATCTTAAAATTATTTAT-AAAGTTATAAAACCACTGAAA-T
127 TTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
** * * * * * * * * *
1177834 CGACTGATAA--AGTTTTTGAAGGCATAAATTACTATAAATGGACTTTTCTTGTGAATAGAAGGC
1 -GA--G-TAACTAGGCTTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGC
* * * * * *
1177897 TTTCACTTCACATAT-CT-CGAGCTAAACATTCAATTATGATCTATTTTAACCAAAACTGAAAAA
62 TTTCACTTCACGTTTCCTAAG-GC-AAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAA
* * *
1177960 AACTCAACTTAAAAAT-ATTTAT-ATGATTATAAAATCATTTAAAGC
125 AATTCAACTT-AAAATCATTTATGA-GATTATAAAACCATTTAAAGT
* * * * *
1178005 AAGTACCTAGGCTTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATGGC-TT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * * *
1178069 CACTTCATGTTCCCCAAGGAAAACATCCATTTATGATCTATGTTAA-CATAAAATGAAAAAAATT
65 CACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCA-AAAATGAAAAAAATT
* * * *
1178133 CAATTTAAAAGCATTTAT-AAAGTTATAAAACCACTTAAAGCT
129 CAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG-T
* * * * * *
1178175 -AGTAA-TAATGCTTTCAAAGTCATGAGTGACTATAAATACACTTTTCTTATCAATCGATGGCTT
1 GAGTAACT-AGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
** ** * * *
1178238 TC-CATTCATTTTTTTTGAGGCAAACATCCAATTACGATCTCTTTTAACCAAAAATGAAAAAAAA
64 TCAC-TTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG-AAAAAAA
*
1178302 TTTAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * *
1178345 GAGTAACTAGTCTTTCGAAGGCATTAGTGATTATACATGGGCTTTTCTTATCAATGGACGGCTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
** * * * * * *
1178410 TGCTTCATGTTTTTCT-TGGTAAACATCCAATTATGATTTGTTTTAA-CTAAAATGAAAAAACAA
65 CACTTCACG-TTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG-AAAAA-AA
* * *
1178473 TTCAACTTAAAATCATTTATAAAATTATAAAACCATTTAAAGC
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * * * *
1178516 AAGAAACTAAGCTTTCAAAAGCATGAGTGACTATAAAGAGAC-TTTCTTATTAATGAATGGCTTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * * *
1178580 CACTTCATGTTT-CTAGAGGCAAACATTCAATTATGATATG-TTTAACCAAAATTAAAAAAAAAT
65 CACTTCACGTTTCCTA-AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * * * **
1178643 CATCTTTAAATCTTTTATAAGATTATAAATCCATTTAAAAC
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * ** * * * * * * * *
1178684 GAGTAACTAGGTTTTCAAACACATGAATGACTACAAATGGACGTTTCTTGTCAA-GAAATAGCCT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATG-GAT-GGCT
* ** * * ** * *
1178748 TT-GCTTCAAATTTCCCAAGGCCAAACATCCAATTATGATCTATTTTAATGAAGAATGAAAAATA
63 TTCACTTCACGTTTCCTAAGG-CAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * *
1178812 TTCAACTTAAAATAATTTATGAGATTGTAAAACCATTTAAAGC
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * *
1178855 GGGTAACTAGGGCTTTGATGGCATGAGTGATTATAAAT-GAACTTGTCTTGTCAATAGATGGCTT
1 GAGTAACTA-GGCTTTGAAGGCATGAGTGATTATAAATAG-ACTTTTCTTATCAATGGATGGCTT
* * * ** ** ** ** *
1178919 TTAGC-TCACCTTT-CTCAAGGCCAGTATCCAATTATGATCTAATGCAATGAAAAATGAAAACAA
64 TCA-CTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* *
1178982 TTCAA-TCTAAAATCATTTAT-AAAGTTATAAAACCACTTAAA-T
127 TTCAACT-TAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* ** *
1179024 GGAGTAA-TCAGGTTTTTGAAGGC-TGAAGTGGCTAT-AATAGACTTTTCTTGTCAATGGATGGC
1 -GAGTAACT-AGG-CTTTGAAGGCATG-AGTGATTATAAATAGACTTTTCTTATCAATGGATGGC
* * * * * * * * *
1179086 TTTCACTTAACGTCTCTTGAGCCAAACATCCAACTATGATCTATTTTAACGAAAAATAAAAAAAC
62 TTTCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA-
* ** * * *
1179151 ATTCTACAAAAAATTATTTATAAGATTATAAAACCATTTAAAGC
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * * * *
1179195 GAGTAACAAGGCTTTCGATGGCATTAGTGACTT-TATATGGACTTTTCTTGTTAACGGATGACTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGA-TTATAAATAGACTTTTCTTATCAATGGATGGCTT
* * * * * *
1179259 ACGCTTCACATTT-CTAGAGGCAAACATCCAATTATAATCTGTTTTAGCCTAAAATGAAAACAAA
64 TCACTTCACGTTTCCTA-AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATG-AAA-AAA
* * * * * *
1179323 ATTCACCTTTAAATCATTTCTAAGGTTATAAAATCATTTAAAGT
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * ** * * *
1179367 G-GATAACTAGGCTTTCGAAAGTATGAGTGACCATAAATGGACCTTTTC-TATGAATGGATAGCT
1 GAG-TAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGA-CTTTTCTTATCAATGGATGGCT
* * * * ** * *
1179430 TTCACTTCACGTTT-GTAGAGGGAAATATCCAATTATGATTTGTTTTAACGTAAAATGGAAAACA
63 TTCACTTCACGTTTCCTA-AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * * * *
1179494 TTC-ACTATAAAATAATTTAT-AAAGTTATAAATCCACTTAAAGA
127 TTCAACT-TAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * * * * *
1179537 GAGTGACAAAGCTATCGAAGGTATAAGTGACTATAAATAGACTTTTTTTGTCAATGGATGGCTTT
1 GAGTAACTAGGCT-TTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* * * * ** *
1179602 CACTTCACGTTTTCC-AAGGTAAACATCCAATAATGATCTATATTAATGAAAAATAAAAAAAATT
65 CACTTCACG-TTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * **
1179666 CAACCTAAAATAATTTATGAGATTGTAAAACCATTTAAACA
129 CAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * *
1179707 G-GTAATTAGACTTTCGATGGCATGAGT-AGGTATAAATAGACTTGTCTTGTCAATGAATGGCTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGA-TTATAAATAGACTTTTCTTATCAATGGATGGCTT
** * * * * * **
1179770 TTGCTTCATGTTT-CTCAAGGCAAACATCCAAGTATTATTTGCTTTAGA-TTAAAAT-AAAAAAA
64 TCACTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTA-ACCAAAAATGAAAAAAA
* * * * *
1179832 -TCATCTTAAAATCATTTCTAAAATTATAAAACCATTCAAAGT
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * ** * * *
1179874 G-GATAACTAGGTTTCTGAAAGCATGAGTAACCATAAATGGACCTTTT-TTGTGAATGGATGGAC
1 GAG-TAACTAGGCTT-TGAAGGCATGAGTGATTATAAATAGA-CTTTTCTTATCAATGGATGG-C
* * * * * * * *
1179937 TTT-GCTTCATGTTTCCGAAAGTAAATATCCAATTATGATTTGTTTTAACCTAAAATGAAAAAAA
62 TTTCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * * ** * *
1180001 TTTAATTTAAAATCATTTATAACG-TTATGCAACGACTTAAA-T
127 TTCAACTTAAAATCATTTATGA-GATTATAAAACCATTTAAAGT
* * * * * *
1180043 AGAGTAACAAGGTTTTCAAAGGCATGAATGACTATAAATAGACTTTTCTTGTCAATGGATGGCGT
1 -GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGC-T
* * * * * ** * *
1180108 TT--GTTCTATGTTTCC-AATGCAAACATCAAATTAGGATCTAATTTAACAAAAAATGAAAAAGA
63 TTCACTTC-ACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * * *
1180170 TT-AATTTAAAAGTCATTTATAAAGA-TATAAAACTACTTAAAGT
127 TTCAACTTAAAA-TCATTTAT-GAGATTATAAAACCATTTAAAGT
* * * * ** *
1180213 GAATAACAAGGCTTTCGAACGTATGAGTGACCATAAAT-G--------GA-C----GATGGCTGT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCT-T
* * * * * * * * * * *
1180264 T-GCTTAACATTTCTTAAGGGAAACGTCTAAATATGATTTGTTTTAATCAAAAATAAAGAAAAAA
64 TCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-GA-AAAAAA
* * * *
1180328 CTGAA-TCCAAAATCATTTATGAAATTATAAAACTC-TTTAAAGT
127 TTCAACT-TAAAATCATTTATGAGATTATAAAAC-CATTTAAAGT
* * * * *
1180371 GAGTAACTAGGCTTTCGAAGACATGAGTGACTATAAAT-GAAATTTTCTTCTCAAGGGATGGCTT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAG-ACTTTTCTTATCAATGGATGGCTT
** * * * * * *
1180435 TTGCTCCACATTTTCC-AAGGCAAATATCTAATTATGATCTGTTTTAACTAAGAATGAAACAAAA
64 TCACTTCAC-GTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAA-AAAA
* * * *
1180499 TTCAACTTAAACTCA-TTATGATATTATACAACTATTTAAAGT
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * * * * * * *
1180541 GAGCAACTAAGCTTTCGAAAGTAAGAGTAATTATAAATGGACTTTTCATGTGAGTGGATGGCATT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTT
* ** * * * * *
1180606 CACTTCATGTTT-CTCAAGGCAAACATCCTGTTATGATATATTTTGACCTAAAATGAAAAATATT
65 CACTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATT
* * * * *
1180670 CAATTTAAAATTATTTAT-AAAGTTATACAACCACTTAAA-T
129 CAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * * * ** * * *
1180710 AGACTAGCAAGTCTTTCAAAGATATGAATGACTATAAACAGACTTTTCTTATCAATGGATGGCTT
1 -GAGTAACTAGGCTTT-GAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTT
* * * * * *
1180775 TCGCGTCACGTTTCTTTAA-GCAAACATCCAATTATGATATGATTT----AATAA--AAAAAAA-
64 TCACTTCACGTTTC-CTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAT
*
1180832 TCAACTTAAAATCATTTATGAGATTAT-AAATCATTTAAA-T
128 TCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* *
1180872 CGAGTAACTAGGCTTCTGAAGGCATGTGTGATTATAAATGGACATTTT-TTATCAATGGATGGCT
1 -GAGTAACTAGGCTT-TGAAGGCATGAGTGATTATAAATAGAC-TTTTCTTATCAATGGATGGCT
* * * * * * * *
1180936 TTCGCTTCATGTTTTCTGAGGCAAACATTCAATAATGATATGTTTTAAACAAAAAT-AAAAAATA
63 TTCACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA-A
** * * *
1181000 TTCAACCAAAAATTATTTATGAGATTGTAAAACCATTTTAAA-A
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCA-TTTAAAGT
* * * * * * *
1181043 G-GCAACTAGGCTTCTGATGACATGAGTGATTATAAATGGA-TTTGTCATGTTAATGGATGGCTT
1 GAGTAACTAGGCTT-TGAAGGCATGAGTGATTATAAATAGACTTT-TCTTATCAATGGATGGCTT
** * * ** ***
1181106 TTGCTTCATGTTTCTCT-AGACAAACATCCAATTATGATCTAATTTAATGGAAAATGAAAAAAAT
64 TCACTTCACGTTTC-CTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAAT
* * ** *
1181170 TCAA-TCTATAATCATTTAT-AAAGTTATAAAACCACATAAAGG
128 TCAACT-TAAAATCATTTATGAGA-TTATAAAACCATTTAAAGT
* * * **
1181212 GAGTAA-TAAGGCTTCCGAAGGCCA-AAGTGACTATAAAT-GAACTTTTCTTGCCAATGGATGGC
1 GAGTAACT-AGGCTT-TGAAGG-CATGAGTGATTATAAATAG-ACTTTTCTTATCAATGGATGGC
* * * * * **
1181274 TTTCGCTTCACGTTT-CTCAAGCCAAATATCCAACTATGATTTGTTTTAACCAAAAAT--AAAGC
62 TTTCACTTCACGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAA
** ** * * *
1181336 ATTCTTCAAAAAATCATTTATAAGATTAGAAAACCATTTAAAGC
126 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
* * * * * * *
1181380 AAGTAACTAGGCTTTCGATGGCATGAGTGACTT-TAAATGGAATTGTT-TTGTTAACGGATGGCT
1 GAGTAACTAGGCTTT-GAAGGCATGAGTGA-TTATAAATAGACTT-TTCTTATCAATGGATGGCT
* * * * * * * *
1181443 TGCACTTCACATTT-CTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATAAAAAAAA
63 TTCACTTCACGTTTCCTA-AGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAA
* * * * ** *
1181507 ATCATCTTAAAATCATTTCTAAGATCGTAAAACTATTTAAAGT
127 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
1181550 -AGGTAACTAGGCTTT
1 GA-GTAACTAGGCTTT
1181565 TAAAAGTATG
Statistics
Matches: 5751, Mismatches: 1366, Indels: 664
0.74 0.18 0.09
Matches are distributed among these distances:
154 1 0.00
155 13 0.00
156 30 0.01
157 9 0.00
158 88 0.02
159 67 0.01
160 35 0.01
161 3 0.00
162 90 0.02
163 26 0.00
164 12 0.00
165 64 0.01
166 66 0.01
167 64 0.01
168 583 0.10
169 1609 0.28
170 1748 0.30
171 834 0.15
172 387 0.07
173 19 0.00
174 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
GAGTAACTAGGCTTTGAAGGCATGAGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTTC
ACTTCACGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCA
ACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGT
Found at i:1175702 original size:170 final size:171
Alignment explanation
Indices: 1173945--1180251 Score: 3517
Period size: 169 Copynumber: 37.2 Consensus size: 171
1173935 CCATTTACGA
* * * * *
1173945 CGAGTAACTAGGCTTTTAAAAGCATTAGTGATTATAAATG-GACTTTTC-AAGTTAATGGATGGC
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTA-TCAATGGATGGC
* * * ** * * * *
1174008 ATTCACTTCAAGTTTAACAAGACAAACATCCAATTTTGAACTATTTTAACCT-AAAATAAAAAAA
65 TTTTACTTCATGTTTCCCAAG-CAAACATCCAATTATGATCTGTTTTAACCTAAAAAT-GAAAAA
* * * * * *
1174072 AATT-AATTTAAAATCATTT-TTAAAGTTATACAACCACTTAAAT
128 AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * * ** * *
1174115 AGACTAACAAGGCTTTCAAAGGAATAAGAGACCATAAATG-GACTTTTCTTGTTAATGGATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * * * * *
1174179 TTTGCATAACG-TTCCCAAAGTAAACATCAAATTATGATCTTTTTTAACC-AAAAATGAAAAAAA
66 TTTACTTCATGTTTCCC-AAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAA
* *
1174242 TTCAACTTAAAAAT-ATTTTTGAGATTGTAAAACCATTTAAAG
130 TTCAACTT-AAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * ** * * ** **
1174284 TGGGTAACTAGGCTTT-GAAGGTGTGAGTGATTATAAAT-AAACTTTACTTATGGATGGAAAGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * * * * *
1174347 TTCACTTCACGTTTCCTAAGGTAAACATCCAATTATAATCTGTTTTAA-CAAAAAATAAAAAAAA
66 TTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAA
*
1174411 TTAAACTTAAAATCATTTATGAGATTAT-AAACCATTTGAAA-
130 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTT-AAAG
* * * * * * *
1174452 C-ATGTAACAAGACATTCAAAGGCGTAAGTGATTATAAAT-AGACTTTTCTTGTCAATAGATGG-
1 CGA-GTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* ** * * * ** * * *
1174514 TTTTCACTACACATTTTCTAAGATAAAACATTTAATTATGATTTATTTTAA-CTAAAAATAAAAA
65 TTTT-ACTTCATGTTTCCCAAG--CAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAA
* * * *
1174578 AAATTGAACTTAAACTCATCTATGAGATTATAAAACCATTTATAG
127 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * *
1174623 TGAGTAACTAGGCTTTCAAAAGCATAAGTGATTATAAATG-GACTTTTCTTGTGAATGGATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * *
1174687 TTCACTT-ATTGTTTCCTAAAACAAACATCTAATTATGATCTGTTTTAACCT-AAAAT-AAAAAA
66 TTTACTTCA-TGTTTCC-CAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAA
* * * * * * *
1174749 ATTTAAGTTAAAATCATTTCT-AAAGTTATACAACCACTTAAAT
129 ATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * * * * * *
1174792 AG-GCAAACAAGGCTTTCGAAGGAAAGAGTGACTATATAT-TGATTTTTCTTATCAATGGATGGC
1 CGAG-TAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* ** * *
1174855 TTTTCCTTCACATTTCCCAAGGTC-AACATCCAATTATGATCTATTTTAACC-AAAAATGAAAAG
65 TTTTACTTCATGTTTCCCAA-G-CAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* *
1174918 AATTCAACTTAAAAACATTTATGAGATTATAAACCCATTTAAAG
128 AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * *
1174962 CGGGTAACTAGGCTTT-AATGACATGAGTGATTATAAAT-AGACTTTTCTTATAAATGGAAGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* ** * * * *
1175025 TTCACTTCATGTTTCTTGAGGCAAACATCCAACTATGATTTGTTTTAA-CAAAAAATGAAAAAAA
66 TTTACTTCATGTTTC-CCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAA
* * *
1175089 TTTAGCTTGAAATCATTTATGAGATTAT-AAACCATTTAAAG
130 TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * ** * * *
1175130 TGAGTAACTAGGCTTTCGAAGATATAAGTGATTATAAAT-AGACTTTTCTTGTCAATGGATGACT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* *** * * * * * * *
1175194 TTTGCTTCACAT-TTTTTGAGGGAAACA-CTTAATTATGCTATGTTTTAATC-AAAAATAAAAAA
66 TTTACTT--CATGTTTCCCAAGCAAACATC-CAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* * * * *
1175256 AATTAAACTTTAACTCATTTATGAGATTACAAAACCATTTACAG
128 AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * *
1175300 CGAGTAACTAGGTTTTGAAA-GCTTGAGTGATTATAAATGA-AATTTTCTTGTGAATGGATAGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * *** * * *
1175363 TTCATTTCTTGTTTCTTGAGCCAAACCTCCAATTATGATTTGTTTTAACCT-AAACT-AAAAAAA
66 TTTACTTCATGTTTCCCAAG-CAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAA
* * * * * * *
1175426 ATCAATTTAAAATCATTTCT-AAATTTATACAACCACTTAAAT
130 TTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * *
1175468 AGACTAA-TAAGGCTTTCAGAA-GAATGAGTAATTATAAATG-GACTTTTCTTATCAATGGATGG
1 CGAGTAACT-AGGCTTTCA-AAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGG
* * * * *
1175530 CTTTTACTTCATGTTTCCCCAAGTAAACATCCAATTATGATATATTTTAAGC-AAACATGAAAAA
64 CTTTTACTTCATGTTT-CCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* * *
1175594 AATTCAACTTAAAAACATTTAGGAGATTATAAAACCTTTTAAAG
128 AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * *
1175638 CGAGTAATTAGGCTTTTAAAGGTATGAGTGATTATAAATGAAACTTTT-TTATTAATGAATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
** * * * *
1175702 TTCCCTTCATG-TTCCTCGAGGCAAACATCCAAGTATGATCTGTTTTAGCCT-TAAATGAAAAAA
66 TTTACTTCATGTTTCC-C-AAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATG-AAAAA
* * * * * *
1175765 ATATTCAATTTAAACTCATTCA-GAAACTTATAAAACCACTTAAGG
128 A-ATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * *
1175810 TGAGTAA-AAGGCATTCAAAGTCAAT-AGTGAATATAAATG-GAC-TTTCTTGTCAATGGATGGC
1 CGAGTAACTAGGCTTTCAAAGGC-ATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* *** * * * *
1175871 CTTTACATTACAT-TTTTAGAGGCAAACATCCAATGATGATATGTTTTAA-CAAAAAATGAAAAA
65 TTTTAC-TT-CATGTTTCCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* * * * * * *
1175934 CAATTCATCTTAAAATTATTTAT-AAAGTTATAGAACTACTTAAAT
128 -AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
** * * * * * *
1175979 AAACTAA-TAAGGTTTTCGAAGGCATGATTGACTATAAATG-GACTTTTTTTTATCAATGGATGG
1 CGAGTAACT-AGGCTTTCAAAGGCATGAGTGATTATAAATGAGAC-TTTTCTTATCAATGGATGG
* * * * * * *
1176042 CTTTTGCTTCACGTTTCTCAAGGTAAACATCCAATT-TAAATCTTTTTTCACC-AAAAATGAAAA
64 CTTTTACTTCATGTTTCCCAA-GCAAACATCCAATTAT-GATCTGTTTTAACCTAAAAATGAAAA
** * * *
1176105 AAAGTTCAACTTTCAATCATATATGAGATCATAGAACCATTTAAAG
127 AAA-TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * *
1176151 CGAGTAAGTAGTCTTT-AGAAGGCATAAGTGATTATAAATG-GACTTTTCTTATGAATGGA-GTC
1 CGAGTAACTAGGCTTTCA-AAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* ** * * * *
1176213 TTTCACTTCACATTTCCCAAGGAAAACATCCAAATATGATATGTTTTAA-CAAAAAATGAAAAAC
65 TTTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA-
* * * * * *
1176277 AATTCAACTTAAAATTATATATTAAATTATAAAACTATTTAAAAT
128 AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTT-AAAG
* * * * * **
1176322 CG-GTAACTAGCCTTTCAAAGGCATGATTGATTATAAAT-ACAC-TTTCTTGTGAATGGAAAAG-
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGG-ATGGC
* ** * * * *
1176383 ---T-CTTCACGTTTCATGAGGCAAACAAT-CAATTATGATCTGTTTTAA-CTTAGAATTAAAAA
65 TTTTACTTCATGTTTC-CCAAGCAAAC-ATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* * * * *
1176442 AATTCACCTTAAAAACATTTAT-AAAGTTATAAAACCACTAAAAG
128 AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * * * *
1176486 TGACTAACAAGGCATTCAAAGGCATGAGTGACTATAAGTG-GACCTTTCTTATTAATGGATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
** * * *
1176550 TTCCCTTTATG-TTCCCTAAGGCAAACATCCTATTATGATCTGTTTTAACCT-TAAATGAATAAA
66 TTTACTTCATGTTTCCC-AA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAA-AAA
* * * * * * *
1176613 AATTTAATTTAAACTCATTTAT-AAAGTTATAAAATCACTTAAGG
128 AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * * * *
1176657 TGAGTAA-AAGGGCTTTTAAAGTCATAAGCGAATATAAAT--TACTTTTCTTATCAATGGATGGC
1 CGAGTAACTA-GGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* * * * *
1176719 TTTTGCTTCACGTTTCACAAGGGAAATATCCAA-TATGATCCT-TTTTAACC-AAAAAT-AAAAA
65 TTTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGAT-CTGTTTTAACCTAAAAATGAAAAA
* * * * *
1176780 TATTTCAACTTAAAATCATTTGTTAAATTATAAAGCCATTTAAAG
128 -AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* ** * * *
1176825 CGGGTAACTAGGCTTTTGAAGGCATGAGTGATTATAAAT-AGACTTTTCCTATGAATGGAAGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * ** *** * *
1176889 TTCATTTCACATTTTTTAAGGCAAACATCCAATTATGATATGTTTTAA--TAAACAATAAAAAAA
66 TTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAA-AATGAAAAAA
* * *
1176952 ATTCAACTTAAAACCATTTATAAGATTAT-AAACCATTTAAAC
129 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * *
1176994 CTAGTAACCAGGCTTTCAAAGGCATAAGTGATTATAAAT-AGACTTTTCCTGTCAATGGATGAC-
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* ** ** * * *
1177057 --T--TTC--GCTTGAC-A--AAACATTTAATTAAGATTTGTTTTAGCC-AAAAAT-AAAAAAGA
66 TTTACTTCATGTTTCCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAA-A
* * *
1177111 GTTCAACTTAAACTCATTTATGAGATTGTAAAACCATTTATAG
130 -TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * * * * *
1177154 TGAGTAACTAGGCTTTCGAAA--CTATAAGTTAGT-TAAAT-ACAATTTTTTTGTGAATGGATGA
1 CGAGTAACTAGGCTTTC-AAAGGC-ATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGG
* * * * *
1177215 CTTTCACTTCTTGTTTCCTAAAACAAACATCCAATTATGATCTATTTTAACCT-AAAAT-AAAAA
64 CTTTTACTTCATGTTTCC-CAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* * * * * *
1177278 AATTTAATTTAAAATCATTTCT-AAAGTTATACAACCACTTAAATAG
128 AATTCAACTTAAAATCATTTATGAGA-TTATAAAACCA-TTTAA-AG
** * ** ** * * *
1177324 -GCCT-ACAAGGCTTTTGAAGAAATGAGTGACTATAAATG-GACTTTTCTT-GCTGATGGATGGC
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATC-AATGGATGGC
* * * * * * * * *
1177385 TTTTGCTTCACGTTTTCTAAGGTAAACATTCAATTATGATCTATTTTAATC-AAAAATGAAAAGG
65 TTTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAA-A
* *
1177449 AATTCAAGTTAAAAAT-ATTTATGAGATTATAAAACCATTCAAAG
128 AATTCAACTT-AAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * *
1177493 TGAGTAACTAGGCTATCGAAGGCATCAGTGATTATAAAT-AGACTTTTCTTATTAATGGATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
** * * * *
1177557 TTCCCTTCATGTTTTCTAAGGCAAACAACCAACTATGATCTGTTTTAACCT-AAAATGAAAAAGA
66 TTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA-A
* * * * * *
1177621 A-TCCATTTAAACTCATTTATAAGCTTATAAAAGCA-TT-AAG
129 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* ** * * * * ** **
1177661 GGTAAGTAAAAAGGATTTCAAAGTCATAAGCGAACATAAATG-GACTTTTCTTAAAAATGGATGG
1 CG--AGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGG
* ** * *
1177725 CTTTTGCTTCATGTTTTTCAAGGC-AACATCCAATTATGATATGTTTTAA-CTAGAAATAGAAAA
64 CTTTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAAT-G-AAA
* * * * * * *
1177788 AAAATTTATCTTAAAATTATTTAT-AAAGTTATAAAACCACTGAAAT
126 AAAATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * ** * * * * * * * *
1177834 CGACTGA-TAAAGTTTTTGAAGGCATAAATTACTATAAATG-GACTTTTCTTGTGAATAGAAGGC
1 CGAGTAACT-AGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* ** * * * * * *
1177897 TTTCACTTCACATATCTCGAGCTAAACATTCAATTATGATCTATTTTAACC-AAAACTGAAAAAA
65 TTTTACTTCATGTTTCCCAAGC-AAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAA
* *
1177961 ACTCAACTTAAAAAT-ATTTAT-ATGATTATAAAATCATTTAAAG
129 ATTCAACTT-AAAATCATTTATGA-GATTATAAAACCATTTAAAG
* * *
1178004 CAAGTACCTAGGCTTTCAAAGGCATGAGTGATTATAAATG-GACTTTTCTTGTCAATGGATGGC-
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * * * * *
1178067 TTCACTTCATGTTCCCCAAGGAAAACATCCATTTATGATCTATGTTAACAT-AAAATGAAAAAAA
66 TTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAA
* * * *
1178131 TTCAATTTAAAAGCATTTAT-AAAGTTATAAAACCACTTAAAG
130 TTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * *
1178173 CTAGTAA-TAATGCTTTCAAAGTCATGAGTGACTATAAAT-ACACTTTTCTTATCAATCGATGGC
1 CGAGTAACT-AGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
* * *** * * *
1178236 -TTTCCATTCATTTTTTTTGAGGCAAACATCCAATTACGATCTCTTTTAACC-AAAAATGAAAAA
65 TTTTAC-TTCA-TGTTTCCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATG-AAAA
*
1178299 AAATTTAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
127 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * *
1178344 TGAGTAACTAGTCTTTCGAAGGCATTAGTGATTATACATG-GGCTTTTCTTATCAATGGACGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * *** * *
1178408 TTTGCTTCATGTTTTTCTTGGTAAACATCCAATTATGATTTGTTTTAA-CT-AAAATGAAAAAAC
66 TTTACTTCATG-TTTCCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATG-AAAAA-
* *
1178471 AATTCAACTTAAAATCATTTATAAAATTATAAAACCATTTAAAG
128 AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * *
1178515 CAAGAAACTAAGCTTTCAAAAGCATGAGTGACTATAAA-GAGAC-TTTCTTATTAATGAATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * * * *
1178578 TTCACTTCATGTTT-CTAGAGGCAAACATTCAATTATGATATG-TTTAACC-AAAATTAAAAAAA
66 TTTACTTCATGTTTCCCA-A-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAA
* * * * * * *
1178640 AATCATCTTTAAATCTTTTATAAGATTATAAATCCATTTAAAA
129 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* ** * * * * * * *
1178683 CGAGTAACTAGGTTTTCAAACACATGAATGACTACAAATG-GACGTTTCTTGTCAA-GAAATAGC
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATG-GATGGC
* * ** * *
1178746 CTTTGCTTCAAATTTCCCAAGGCCAAACATCCAATTATGATCTATTTTAA--TGAAGAATGAAAA
65 TTTTACTTCATGTTTCCCAA-G-CAAACATCCAATTATGATCTGTTTTAACCT-AAAAATGAAAA
* * *
1178809 ATATTCAACTTAAAATAATTTATGAGATTGTAAAACCATTTAAAG
127 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * *
1178854 CGGGTAACTAGGGCTTT-GATGGCATGAGTGATTATAAATGA-ACTTGTCTTGTCAATAGATGGC
1 CGAGTAACTA-GGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGC
** * * ** ** **
1178917 TTTTAGC-TCACCTTTCTCAAGGCCAGTATCCAATTATGATCTAATGCAA--TGAAAAATGAAAA
65 TTTTA-CTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCT-AAAAATGAAAA
* * *
1178979 CAATTCAA-TCTAAAATCATTTAT-AAAGTTATAAAACCACTTAAATG
127 AAATTCAACT-TAAAATCATTTATGAGA-TTATAAAACCATTTAAA-G
* ** ** *
1179025 -GAGTAA-TCAGGTTTTTGAAGGC-TGAAGTGGCTAT-AAT-AGACTTTTCTTGTCAATGGATGG
1 CGAGTAACT-AGGCTTTCAAAGGCATG-AGTGATTATAAATGAGACTTTTCTTATCAATGGATGG
* * * * *** * * * *
1179085 CTTTCACTTAACGTCTCTTGAGCCAAACATCCAACTATGATCTATTTTAA-CGAAAAATAAAAAA
64 CTTTTACTTCATGTTTCCCAAG-CAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAA
* ** * *
1179149 ACATTCTACAAAAAATTATTTATAAGATTATAAAACCATTTAAAG
128 A-ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * * * *
1179194 CGAGTAACAAGGCTTTCGATGGCATTAGTGACTT-TATATG-GACTTTTCTTGTTAACGGATGAC
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGA-TTATAAATGAGACTTTTCTTATCAATGGATGGC
*** ** * * *
1179257 TTACGCTTCACATTT-CTAGAGGCAAACATCCAATTATAATCTGTTTTAGCCT-AAAATGAAAAC
65 TTTTACTTCATGTTTCCCA-A-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATG-AAA-
* * * * * *
1179320 AAAATTCACCTTTAAATCATTTCTAAGGTTATAAAATCATTTAAAG
126 AAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * ** * *
1179366 TG-GATAACTAGGCTTTCGAAA-GTATGAGTGACCATAAATG-GACCTTTTC-TATGAATGGATA
1 CGAG-TAACTAGGCTTTC-AAAGGCATGAGTGATTATAAATGAGA-CTTTTCTTATCAATGGATG
* * ** * * * * *
1179427 GCTTTCACTTCACGTTT-GTAGAGGGAAATATCCAATTATGATTTGTTTTAACGT-AAAATGGAA
63 GCTTTTACTTCATGTTTCCCA-A-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAA
* * * * *
1179490 AACATTC-ACTATAAAATAATTTAT-AAAGTTATAAATCCACTTAAAG
126 AAAATTCAACT-TAAAATCATTTATGAGA-TTATAAAACCATTTAAAG
* * * * * * * * * * *
1179536 AGAGTGACAAAGCTATCGAAGGTATAAGTGACTATAAAT-AGACTTTTTTTGTCAATGGATGGCT
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * * * * * *
1179600 TTCACTTCACGTTTTCCAAGGTAAACATCCAATAATGATCTATATTAA--TGAAAAATAAAAAAA
66 TTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCT-AAAAATGAAAAAA
* * *
1179663 ATTCAACCTAAAATAATTTATGAGATTGTAAAACCATTTAAA-
129 ATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * * * * * * *
1179705 C-AGGTAATTAGACTTTCGATGGCATGAGT-AGGTATAAAT-AGACTTGTCTTGTCAATGAATGG
1 CGA-GTAACTAGGCTTTCAAAGGCATGAGTGA-TTATAAATGAGACTTTTCTTATCAATGGATGG
* * * * * * *
1179767 CTTTTGCTTCATGTTTCTCAAGGCAAACATCCAAGTATTATTTGCTTTAGA--TTAAAAT-AAAA
64 CTTTTACTTCATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTA-ACCTAAAAATGAAAA
* * * * *
1179829 AAA-TCATCTTAAAATCATTTCTAAAATTATAAAACCATTCAAAG
127 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
* * ** * *
1179873 TG-GATAACTAGG-TTTCTGAAA-GCATGAGTAACCATAAATG-GACCTTTT-TTGTGAATGGAT
1 CGAG-TAACTAGGCTTTC--AAAGGCATGAGTGATTATAAATGAGA-CTTTTCTTATCAATGGAT
* * * * *
1179933 GGAC-TTTGCTTCATGTTTCCGAAAGTAAATATCCAATTATGATTTGTTTTAACCT-AAAATGAA
62 GG-CTTTTACTTCATGTTTCC-CAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAA
* * * ** * * *
1179996 AAAAATTTAATTTAAAATCATTTATAACG-TTATGCAACGACTTAAAT
125 AAAAATTCAACTTAAAATCATTTATGA-GATTATAAAACCATTTAAAG
* * * * * * *
1180043 AGAGTAACAAGGTTTTCAAAGGCATGAATGACTATAAAT-AGACTTTTCTTGTCAATGGATGGCG
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
* * * ** * *
1180107 TTT-GTTCTATGTTT-CCAATGCAAACATCAAATTAGGATCTAATTTAA-CAAAAAATGAAAAAG
66 TTTACTTC-ATGTTTCCCAA-GCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAA
* * * *
1180169 ATT-AATTTAAAAGTCATTTATAAAGA-TATAAAACTACTTAAAG
129 ATTCAACTTAAAA-TCATTTAT-GAGATTATAAAACCATTTAAAG
* * * * * * **
1180212 TGAATAACAAGGCTTTCGAACGTATGAGTGACCATAAATG
1 CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATG
1180252 GACGATGGCT
Statistics
Matches: 4740, Mismatches: 1113, Indels: 568
0.74 0.17 0.09
Matches are distributed among these distances:
157 6 0.00
158 25 0.01
159 52 0.01
160 33 0.01
161 4 0.00
162 2 0.00
164 13 0.00
165 62 0.01
166 57 0.01
167 53 0.01
168 458 0.10
169 1422 0.30
170 1380 0.29
171 821 0.17
172 334 0.07
173 18 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (171 bp):
CGAGTAACTAGGCTTTCAAAGGCATGAGTGATTATAAATGAGACTTTTCTTATCAATGGATGGCT
TTTACTTCATGTTTCCCAAGCAAACATCCAATTATGATCTGTTTTAACCTAAAAATGAAAAAAAT
TCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAG
Found at i:1177857 original size:341 final size:340
Alignment explanation
Indices: 1173947--1181524 Score: 3124
Period size: 339 Copynumber: 22.4 Consensus size: 340
1173937 ATTTACGACG
* * * * * *
1173947 AGTAACTAGGCTTTTAAAAGCATTAGTGATTATAAATGGACTTTTC-AAGTTAATGGATGGCATT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTA-TCAATGGATGGCTTT
** * ** * * *
1174011 CACTTCAAGTTTAACAA-GACAAACATCCAATTTTGA-ACTATTTTAACCTAAAATAAAAAAAAA
65 TGCTTCATGTTTTTCAAGGA-AAACATCCAATTATGATA-TGTTTTAA-CTAAAATGAAAAAAAA
* * *
1174074 TTAAT-TTAAAATCATTTTTAAAGTTATACAACCACTTAAA-TA-GACTAACAAGGCTTTCAAAG
127 TTAATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCATGA-T-A-AA-GCTTTCAAAG
* * * * * * ** * * * * * * *
1174136 GAATAAGAGACCATAAATGGACTTTTCTTGTTAATGGATGGCTTTTGCATAACG-TTCCCAAAGT
188 GCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGGC
* * * * * * *
1174200 AAACATCAAATTATGATCTTTTTTAACCAAAAATG-AAAAAAATTCAACTTAAAAAT-ATTTTTG
253 AAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATA
* *
1174263 AGATTGTAAAACCATTTAAAGTG
318 AGATTATAAAACCATTTAAAGTA
* * ** * ** * ** ** *
1174286 GGTAACTAGGCTTT-GAAGGTGTGAGTGATTATAAATAAACTTTACTTATGGATGGAAAGCTTTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* * * * * * *
1174350 ACTTCACG-TTTCCTAAGGTAAACATCCAATTATAATCTGTTTTAACAAAAAAT-AAAAAAAATT
66 GCTTCATGTTTTTC-AAGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAAATT
* * * *
1174413 AAACTTAAAATCATTTAT-GAGATTAT-AAACCATTTGAAA-CATG-TAACAAGACATTCAAAGG
129 AATCTTAAAATCATTTATAAAG-TTATAAAACCACTT-AAAGCATGAT-A-AAG-CTTTCAAAGG
* * * * * * * * ** **
1174474 CGTAAGTGATTATAAATAGACTTTTCTTGTCAATAGATGGTTTTCACTACACATTTTCTAAGATA
189 CATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAG-GC
** * * * * * * * * *
1174539 AAACATTTAATTATGATTTATTTTAACTAAAAAT-AAAAAAAATTGAAC-TTAAACTCATCTATG
253 AAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATA
* *
1174602 AGATTATAAAACCATTTATAGTG
318 AGATTATAAAACCATTTAAAGTA
* * * *
1174625 AGTAACTAGGCTTTCAAAAGCATAAGTGATTATAAATGGACTTTTCTTGTGAATGGATGGCTTTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* * * * * *
1174690 ACTT-AT-TGTTTCCTAA-AACAAACATCTAATTATGATCTGTTTTAACCTAAAAT-AAAAAAAT
66 GCTTCATGT-TTTTC-AAGGA-AAACATCCAATTATGATATGTTTTAA-CTAAAATGAAAAAAAA
* * * * * * *
1174751 TTAA-GTTAAAATCATTTCTAAAGTTATACAACCACTTAAATAGGCA-AACAAGGCTTTCGAAGG
127 TTAATCTTAAAATCATTTATAAAGTTATAAAACCACTT-AA-A-GCATGATAAAGCTTTCAAAGG
* * * * * * ** * *
1174814 AAAGAGTGACTATATATTGATTTTTCTTATCAATGGATGGCTTTTC-CTTCACATTTCCCAAGGT
189 CATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGC-TTTCACTTCATGTTTTCTAAGG-
* * * * *
1174878 C-AACATCCAATTATGATCTATTTTAACCAAAAATG-AAAAGAATTCAAC-TTAAAAACATTTAT
252 CAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTAT
* * **
1174940 GAGATTATAAACCCATTTAAAGCG
317 AAGATTATAAAACCATTTAAAGTA
* * * * * * * *
1174964 GGTAACTAGGCTTT-AATGACATGAGTGATTATAAATAGACTTTTCTTATAAATGGAAGGCTTTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* * * * * *
1175028 ACTTCATGTTTCTT-GAGGCAAACATCCAACTATGATTTGTTTTAACAAAAAATG-AAAAAAATT
66 GCTTCATGTTT-TTCAAGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAAATT
* * * * * * *
1175091 TAGCTTGAAATCATTTAT-GAGATTAT-AAACCATTTAAAG--TGAGTAACTAGGCTTTCGAAGA
129 AATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCATGA-TAA--A-GCTTTCAAAGG
* * * * * * ** ** * * *
1175152 TATAAGTGATTATAAATAGACTTTTCTTGTCAATGGATGACTTTTGCTTCACATTTTTTGAGGGA
189 CATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGGCA
* * * * * * * * *
1175217 AACA-CTTAATTATGCTATGTTTTAATCAAAAAT-AAAAAAAATTAAACTTT-AACTCATTTATG
254 AACATC-CAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATA
* * **
1175279 AGATTACAAAACCATTTACAGCG
318 AGATTATAAAACCATTTAAAGTA
* * * * * * * * * *
1175302 AGTAACTAGGTTTTGAAA-GCTTGAGTGATTATAAATGAAATTTTCTTGTGAATGGATAGCTTTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
** * * ** * * * *
1175366 ATTTCTTGTTTCTT-GAGCCAAACCTCCAATTATGATTTGTTTTAACCTAAACT-AAAAAAAATC
66 GCTTCATGTTT-TTCAAGGAAAACATCCAATTATGATATGTTTTAA-CTAAAATGAAAAAAAATT
* * * * * *
1175429 AAT-TTAAAATCATTTCTAAATTTATACAACCACTTAAATAG-ACTAATAAGGCTTTCAGAA-GA
129 AATCTTAAAATCATTTATAAAGTTATAAAACCACTT-AA-AGCA-TGATAAAGCTTTCA-AAGGC
* * * * * * * *
1175491 ATGAGTAATTATAAATGGACTTTTCTTATCAATGGATGGCTTTTACTTCATGTTTCCCCAA-GTA
190 ATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTT-TCTAAGGCA
* * * * * **
1175555 AACATCCAATTATGATATATTTTAAGC-AAACATG-AAAAAAATTCAAC-TTAAAAACATTTAGG
254 AACATCCAATTATGATCTGTTTTAACCAAAAC-TGAAAAAAAACTCAACTTTAAAATCATTTATA
* **
1175617 AGATTATAAAACCTTTTAAAGCG
318 AGATTATAAAACCATTTAAAGTA
* * * * * * *
1175640 AGTAATTAGGCTTTTAAAGGTATGAGTGATTATAAATGAAACTTTT-TTATTAATGAATGGCTTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATG-GACTTTTCTTATCAATGGATGGCTTT
** ** * * * * * *
1175704 CCCTTCATGTTCCTCGAGGCAAACATCCAAGTATGATCTGTTTTAGCCTTAAATGAAAAAAATAT
65 TGCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTA-ACTAAAATGAAAAAAA-AT
* * * * * * *
1175769 TCAAT-TTAAACTCATTCAGAAACTTATAAAACCACTT-AAG-GTGAGTAAAAGGCATTCAAAGT
128 T-AATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCATGA-T-AAA-GCTTTCAAAGG
* * * *
1175831 CAAT-AGTGAATATAAATGGAC-TTTCTTGTCAATGGATGGCCTTT-ACATTACA--TTTT-TAG
189 C-ATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGG-CTTTCAC-TT-CATGTTTTCTA-
* * * * * * * *
1175890 AGGCAAACATCCAATGATGATATGTTTTAACAAAAAATGAAAAACAATTCATC-TTAAAATTATT
249 AGGCAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATT
* * *
1175954 TATAA-AGTTATAGAACTACTTAAA-TAA
314 TATAAGA-TTATAAAACCATTTAAAGT-A
* * * * * * *
1175981 ACTAA-TAAGGTTTTCGAAGGCATGATTGACTATAAATGGACTTTTTTTTATCAATGGATGGCTT
1 AGTAACT-AGGCTTTCAAAGGCATAAGTGATTATAAATGGAC-TTTTCTTATCAATGGATGGCTT
* * * * * * * * *
1176045 TTGCTTCACGTTTCTCAAGGTAAACATCCAATT-TAAATCTTTTTTCACCAAAAATGAAAAAAAG
64 TTGCTTCATGTTTTTCAAGGAAAACATCCAATTAT-GATATGTTTT-AACTAAAATGAAAAAAAA
** * * * * *
1176109 TTCAA-CTTTCAATCATATAT-GAGATCATAGAACCATTTAAAGC--GAGTAAGTAGTCTTT-AG
127 TT-AATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCATGA-TAA--AG-CTTTCA-
* * * * * ** * *
1176169 AAGGCATAAGTGATTATAAATGGACTTTTCTTATGAATGGA-GTCTTTCACTTCACATTTCCCAA
185 AAGGCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAA
* * * * * * * * *
1176233 GGAAAACATCCAAATATGATATGTTTTAACAAAAAATGAAAAACAATTCAAC-TTAAAATTATAT
250 GGCAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTT
* * *
1176297 ATTAA-ATTATAAAACTATTTAAAATC
315 A-TAAGATTATAAAACCATTTAAAGTA
* * * * ** * * **
1176323 GGTAACTAGCCTTTCAAAGGCATGATTGATTATAAATACAC-TTTCTTGTGAATGGAAAAG----
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGG-ATGGCTTT
* * * * *
1176383 T-CTTCACG--TTTCATGAGGCAAACAAT-CAATTATGATCTGTTTTAACTTAGAAT-TAAAAAA
65 TGCTTCATGTTTTTCA--AGGAAAAC-ATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAA
* * * * *
1176443 ATTCACCTTAAAAACATTTATAAAGTTATAAAACCACTAAAAG--TGACTAACAAGGCATTCAAA
126 ATTAATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCATGA-T-A-AA-GCTTTCAAA
* * * * * **
1176506 GGCATGAGTGACTATAAGTGGACCTTTCTTATTAATGGATGGCTTTCCCTTTATGTTCCCTAAGG
187 GGCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGG
* * * * * *
1176571 CAAACATCCTATTATGATCTGTTTTAACCTTAAA-TGAATAAAAATTTAA-TTTAAACTCATTTA
252 CAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAAAAAACTCAACTTTAAAATCATTTA
* * * *
1176634 TAA-AGTTATAAAATCACTTAAGGTG
316 TAAGA-TTATAAAACCATTTAAAGTA
* * * * * *
1176659 AGTAA-AAGGGCTTTTAAAGTCATAAGCGAATATAAAT-TACTTTTCTTATCAATGGATGGCTTT
1 AGTAACTA-GGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTT
* ** * * * * * *
1176722 TGCTTCACGTTTCACAAGGGAAATATCCAA-TATGATCCT-TTTTAACCAAAAAT-AAAAATATT
65 TGCTTCATGTTTTTCAAGGAAAACATCCAATTATGAT-ATGTTTTAA-CTAAAATGAAAAAAAAT
* * * * * **
1176784 TCAA-CTTAAAATCATTTGTTAAA-TTATAAAGCCATTTAAAGC-GGGTAACTAGGCTTTTGAAG
128 T-AATCTTAAAATCATTT-ATAAAGTTATAAAACCACTTAAAGCATGATAA--A-GCTTTCAAAG
* * * * * ** *
1176846 GCATGAGTGATTATAAATAGACTTTTCCTATGAATGGAAGGCTTTCATTTCACATTTTTTAAGGC
188 GCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGGC
* * * * *
1176911 AAACATCCAATTATGATATGTTTTAA-TAAACAAT-AAAAAAAATTCAAC-TTAAAACCATTTAT
253 AAACATCCAATTATGATCTGTTTTAACCAAA-ACTGAAAAAAAACTCAACTTTAAAATCATTTAT
*
1176973 AAGATTAT-AAACCATTTAAACCT-
317 AAGATTATAAAACCATTTAAA-GTA
* * * * * *
1176996 AGTAACCAGGCTTTCAAAGGCATAAGTGATTATAAATAGACTTTTCCTGTCAATGGATGACTTTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* ** * * * * *
1177061 GC-T--TG-------A-CAAAACATTTAATTAAGATTTGTTTTAGCCAAAAAT-AAAAAAGAGTT
66 GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTA-ACTAAAATGAAAAAA-AATT
* * * * *
1177114 CAA-CTTAAACTCATTTAT-GAGATTGTAAAACCATTTATAG--TGAGTAACTAGGCTTTCGAAA
129 -AATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCATGA-TAA--A-GCTTTC-AAA
* * * * * * * * * * * *
1177175 --CTATAAGTTAGT-TAAATACAATTTTTTTGTGAATGGATGACTTTCACTTCTTGTTTCCTAAA
187 GGC-ATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAG
* * * *
1177237 ACAAACATCCAATTATGATCTATTTTAACCTAAAA-T--AAAAAAATTTAA-TTTAAAATCATTT
251 GCAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAAAAAACTCAACTTTAAAATCATTT
* * *
1177298 CTAA-AGTTATACAACCACTTAAA-TA
315 ATAAGA-TTATAAAACCATTTAAAGTA
* * ** ** * * * *
1177323 GGCCT-ACAAGGCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTT-GCTGATGGATGGCT
1 AG--TAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATC-AATGGATGGCT
* * * * * * **
1177386 TTTGCTTCACG-TTTTCTAAGGTAAACATTCAATTATGATCTATTTTAATCAAAAATGAAAAGGA
63 TTTGCTTCATGTTTTTC-AAGGAAAACATCCAATTATGATATGTTTTAA-CTAAAATGAAAAAAA
* * *
1177450 ATTCAAGT-TAAAAAT-ATTTAT-GAGATTATAAAACCA-TTCAAAG--TGAGTAACTAGGCTAT
126 ATT-AA-TCTTAAAATCATTTATAAAG-TTATAAAACCACTT-AAAGCATGA-TAA--A-GCTTT
* * * *
1177509 CGAAGGCATCAGTGATTATAAATAGACTTTTCTTATTAATGGATGGCTTTCCCTTCATGTTTTCT
183 CAAAGGCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCT
* * * * *
1177574 AAGGCAAACAACCAACTATGATCTGTTTTAACCTAAAA-TGAAAAAGAA-TCCA-TTTAAACTCA
248 AAGGCAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAAAAAACTCAACTTTAAAATCA
* * *
1177636 TTTATAAGCTTATAAAAGCA-TTAAGGGTA
312 TTTATAAGATTATAAAACCATTTAA-AGTA
** * * * ** **
1177665 AGTAAAAAGGATTTCAAAGTCATAAGCGAACATAAATGGACTTTTCTTAAAAATGGATGGCTTTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
*
1177730 GCTTCATGTTTTTCAAGG-CAACATCCAATTATGATATGTTTTAACTAGAAATAGAAAAAAAATT
66 GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAACTA-AAAT-GAAAAAAAATT
* * * * * **
1177794 TATCTTAAAATTATTTATAAAGTTATAAAACCACTGAAATCGACTGATAAAGTTTTTGAAGGCAT
129 AATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC-A-TGATAAAGCTTTCAAAGGCAT
* * * * * * * * ** * *
1177859 AAATTACTATAAATGGACTTTTCTTGTGAATAGAAGGCTTTCACTTCA-CATATCT-CGAGCTAA
192 GAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAG-GC-AA
* * * *
1177922 ACATTCAATTATGATCTATTTTAACCAAAACTG-AAAAAAACTCAACTTAAAAAT-ATTTATATG
255 ACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATAAG
* *
1177985 ATTATAAAATCATTTAAAGCA
320 ATTATAAAACCATTTAAAGTA
* * * *
1178006 AGTACCTAGGCTTTCAAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGATGGC-TTC
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* *** * * * *
1178070 ACTTCATGTTCCCCAAGGAAAACATCCATTTATGATCTATGTTAACATAAAATG-AAAAAAATTC
66 GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAAATT-
* * * *
1178134 AAT-TTAAAAGCATTTATAAAGTTATAAAACCACTTAAAGCTAGTAATAATGCTTTCAAAGTCAT
129 AATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGC-A-TGATAAAGCTTTCAAAGGCAT
* * * * * *
1178198 GAGTGACTATAAATACACTTTTCTTATCAATCGATGGCTTTC-CATTCATTTTTTTTGAGGCAAA
192 GAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCAC-TTCATGTTTTCTAAGGCAAA
* * * * * *
1178262 CATCCAATTACGATCTCTTTTAACCAAAAATGAAAAAAAATTTAAC-TTAAAATCATTTATGAGA
256 CATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATAAGA
*
1178326 TTATAAAACCATTTAAAGTG
321 TTATAAAACCATTTAAAGTA
* * * * * *
1178346 AGTAACTAGTCTTTCGAAGGCATTAGTGATTATACATGGGCTTTTCTTATCAATGGACGGCTTTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
** * *
1178411 GCTTCATGTTTTTCTTGGTAAACATCCAATTATGATTTGTTTTAACTAAAATGAAAAAACAATTC
66 GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAACTAAAATGAAAAAA-AATT-
* * * * *
1178476 AA-CTTAAAATCATTTATAAAATTATAAAACCATTTAAAGCAAGAAACTAAGCTTTCAAAAGCAT
129 AATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCATGATA--AAGCTTTCAAAGGCAT
* *
1178540 GAGTGACTATAAAGAGAC-TTTCTTATTAATGAATGGCTTTCACTTCATG-TTTCTAGAGGCAAA
192 GAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTA-AGGCAAA
* * * * * *
1178603 CATTCAATTATGATATG-TTTAACCAAAA-TTAAAAAAAAATCATCTTT-AAATCTTTTATAAGA
256 CATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATAAGA
* ***
1178665 TTATAAATCCATTTAAAACG
321 TTATAAAACCATTTAAAGTA
* ** * * * * * * *
1178685 AGTAACTAGGTTTTCAAACACATGAA-TGACTACAAATGGACGTTTCTTGTCAA-GAAATAGCCT
1 AGTAACTAGGCTTTCAAAGGCAT-AAGTGATTATAAATGGACTTTTCTTATCAATG-GATGGCTT
** ** * * * *
1178748 TTGCTTCAAATTTCCCAAGGCCAAACATCCAATTATGATCTATTTTAA-TGAAGAATG-AAAAAT
64 TTGCTTCATGTTTTTCAAGG-AAAACATCCAATTATGATATGTTTTAACT-AA-AATGAAAAAAA
* * * * * * *
1178811 ATTCAA-CTTAAAATAATTTAT-GAGATTGTAAAACCATTTAAAGC-GGGTAACTAGGGCTTT-G
126 ATT-AATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCATGATAA--A--GCTTTCA
* * * * * * * **
1178872 ATGGCATGAGTGATTATAAAT-GAACTTGTCTTGTCAATAGATGGCTTTTAGC-TCA-CCTTTCT
185 AAGGCATGAGTGACTATAAATAG-ACTTTTCTTATTAATGGATGGCTTTCA-CTTCATGTTTTCT
* ** ** ** ** * * * *
1178934 CAAGGCCAGTATCCAATTATGATCTAATGCAATGAAAAATG-AAAACAATTCAA-TCTAAAATCA
248 -AAGGCAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCA
* *
1178997 TTTATAA-AGTTATAAAACCACTTAAA-TGG
312 TTTATAAGA-TTATAAAACCATTTAAAGT-A
* ** ** * *
1179026 AGTAA-TCAGGTTTTTGAAGGC-TGAAGTGGCTAT-AATAGACTTTTCTTGTCAATGGATGGCTT
1 AGTAACT-AGGCTTTCAAAGGCAT-AAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTT
** * * * * ** * * * *
1179088 TCACTTAACGTCTCTT-GAGCCAAACATCCAACTATGATCTATTTTAACGAAAAAT-AAAAAAAC
64 TTGCTTCATGT-TTTTCAAGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAA-
* ** * * * * * * *
1179151 ATT-CTACAAAAAATTATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
126 ATTAAT-CTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGC-A-TGATAAAGCTTTCAAA
* * * * * * * * * **
1179214 GGCATTAGTGACTTTATATGGACTTTTCTTGTTAACGGATGACTTACGCTTCA-CATTTCTAGAG
187 GGCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTA-AG
* * * *
1179278 GCAAACATCCAATTATAATCTGTTTTAGCCTAAAA-TGAAAACAAAATTCACCTTT-AAATCATT
251 GCAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAA-AAAACTCAACTTTAAAATCATT
* * *
1179341 TCTAAGGTTATAAAATCATTTAAAGT-
314 TATAAGATTATAAAACCATTTAAAGTA
* * * ** * *
1179367 GGATAACTAGGCTTTCGAAA-GTATGAGTGACCATAAATGGACCTTTTC-TATGAATGGATAGCT
1 AG-TAACTAGGCTTTC-AAAGGCATAAGTGATTATAAATGGA-CTTTTCTTATCAATGGATGGCT
** * * * * * * *
1179430 TTCACTTCACGTTTGT-AGAGGGAAATATCCAATTATGATTTGTTTTAACGTAAAATG-GAAAAC
63 TTTGCTTCATGTTTTTCA-AGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAA
* * * * * * *
1179493 ATTCA-CTATAAAATAATTTATAAAGTTATAAATCCACTTAAAGAGAGTGACAAAGCTATCGAAG
126 ATTAATCT-TAAAATCATTTATAAAGTTATAAAACCACTTAAAG-CA-TGATAAAGCTTTCAAAG
* * * * * * * *
1179557 GTATAAGTGACTATAAATAGACTTTTTTTGTCAATGGATGGCTTTCACTTCACGTTTTCCAAGGT
188 GCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGGC
* * * ** * * * * *
1179622 AAACATCCAATAATGATCTATATTAATGAAAAAT-AAAAAAAATTCAAC-CTAAAATAATTTATG
253 AAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATA
* *
1179685 AGATTGTAAAACCATTTAAA-CA
318 AGATTATAAAACCATTTAAAGTA
* * * * * * * * * * *
1179707 GGTAATTAGACTTTCGATGGCATGAGT-AGGTATAAATAGACTTGTCTTGTCAATGAATGGCTTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGA-TTATAAATGGACTTTTCTTATCAATGGATGGCTTT
* * * * * * *
1179771 TGCTTCATGTTTCTCAAGGCAAACATCCAAGTATTATTTGCTTTAGATTAAAAT--AAAAAAA-T
65 TGCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTA-ACTAAAATGAAAAAAAATT
* * * *
1179833 CATCTTAAAATCATTTCTAAAATTATAAAACCA-TTCAAAG--TGGATAACTAGGTTTCTGAAA-
129 AATCTTAAAATCATTTATAAAGTTATAAAACCACTT-AAAGCAT-GATAA--AGCTTTC--AAAG
* * * * * * * * *
1179894 GCATGAGTAACCATAAATGGACCTTTT-TTGTGAATGGATGGACTTT-GCTTCATGTTTCCGAAA
188 GCATGAGTGACTATAAATAGA-CTTTTCTTATTAATGGATGG-CTTTCACTTCATGTTTTCTAAG
* * * * *
1179957 GTAAATATCCAATTATGATTTGTTTTAACCTAAAA-TG-AAAAAAATTTAA-TTTAAAATCATTT
251 GCAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAAAAAACTCAACTTTAAAATCATTT
** * *
1180019 ATAACG-TTATGCAACGACTTAAA-TA
315 ATAA-GATTATAAAACCATTTAAAGTA
* * * * * *
1180044 GAGTAACAAGGTTTTCAAAGGCATGAA-TGACTATAAATAGACTTTTCTTGTCAATGGATGGCGT
1 -AGTAACTAGGCTTTCAAAGGCAT-AAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTT
* * * * * * ** * *
1180108 TTG-TTCTATG-TTTCCAATGCAAACATCAAATTAGGATCTAATTTAACAAAAAATG-AAAAAGA
64 TTGCTTC-ATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAAC-TAAAATGAAAAAAAA
* * *
1180170 TTAAT-TTAAAAGTCATTTATAAAGATATAAAACTACTTAAAG--TGAATAACAAGGCTTTCGAA
127 TTAATCTTAAAA-TCATTTATAAAGTTATAAAACCACTTAAAGCATG-AT-A-AA-GCTTTCAAA
* * * * * *** * * *
1180232 CGTATGAGTGACCATAAATGGA-----C-GATGGCT-G-TTGC-TT-A--ACAT-TTCT-TAAGG
187 GGCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGG
* * * * * * * * * **
1180283 GAAACGTCTAAATATGATTTGTTTTAATCAAAAATAAAGAAAAAACTGAA-TCCAAAATCATTTA
252 CAAACATCCAATTATGATCTGTTTTAACCAAAACTGAA-AAAAAACTCAACTTTAAAATCATTTA
*
1180347 TGAA-ATTATAAAACTC-TTTAAAGTG
316 T-AAGATTATAAAAC-CATTTAAAGTA
* * * * * * * *
1180372 AGTAACTAGGCTTTCGAAGACATGAGTGACTATAAATGAAATTTTCTTCTCAAGGGATGGCTTTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
* ** * * * * * *
1180437 GCTCCACATTTTCCAAGGCAAATATCTAATTATGATCTGTTTTAACTAAGAATGAAACAAAATTC
66 GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAACTAA-AATGAAAAAAAATT-
* * * * * *
1180502 AA-CTTAAACTCA-TTATGATA-TTATACAACTATTTAAAG--TGAGCAACTAAGCTTTCGAAA-
129 AATCTTAAAATCATTTAT-AAAGTTATAAAACCACTTAAAGCATGA--TA--AAGCTTTC-AAAG
* * * * * * * * * *
1180561 GTAAGAGTAATTATAAATGGACTTTTCATGTGAGTGGATGGCATTCACTTCATG-TTTCTCAAGG
188 GCATGAGTGACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCT-AAGG
** * * * * * *
1180625 CAAACATCCTGTTATGATATATTTTGACCTAAAA-TG-AAAAATATTCAA-TTTAAAATTATTTA
252 CAAACATCCAATTATGATCTGTTTTAACC-AAAACTGAAAAAAAACTCAACTTTAAAATCATTTA
* *
1180687 TAA-AGTTATACAACCACTTAAA-TA
316 TAAGA-TTATAAAACCATTTAAAGTA
* * * * ** * **
1180711 GACTAGCAAGTCTTTCAAAGATATGAA-TGACTATAAACAGACTTTTCTTATCAATGGATGGCTT
1 -AGTAACTAGGCTTTCAAAGGCAT-AAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTT
* * * * * *
1180775 TCGCGTCACGTTTCTTTAA-GCAAACATCCAATTATGATATGATTTAA-T---A--AAAAAAAAT
64 TTGCTTCATGTTT-TTCAAGGAAAACATCCAATTATGATATGTTTTAACTAAAATGAAAAAAAAT
* * * * * *
1180833 CAA-CTTAAAATCATTTAT-GAGATTAT-AAATCATTTAAATC--GAGTAACTAGGC-TTCTGAA
128 TAATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCATGA-TAA--A-GCTTTC-AAA
* * * * * *
1180892 GGCATGTGTGATTATAAATGGACATTTT-TTATCAATGGATGGCTTTCGCTTCATGTTTTCTGAG
187 GGCATGAGTGACTATAAATAGAC-TTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAG
* * * * * * * ** *
1180956 GCAAACATTCAATAATGATATGTTTTAAACAAAAAT-AAAAAATATTCAAC-CAAAAATTATTTA
251 GCAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTA
* *
1181019 TGAGATTGTAAAACCATTTTAAA--A
316 TAAGATTATAAAACCA-TTTAAAGTA
* * * * * * * * *
1181043 GGCAACTAGGC-TTCTGATGACATGAGTGATTATAAATGGA-TTTGTCATGTTAATGGATGGCTT
1 AGTAACTAGGCTTTC-AAAGGCATAAGTGATTATAAATGGACTTT-TCTTATCAATGGATGGCTT
* * * **
1181106 TTGCTTCATGTTTCTCTA-GACAAACATCCAATTATGATCTAATTTAA-TGGAAAATG-AAAAAA
64 TTGCTTCATGTTTTTCAAGGA-AAACATCCAATTATGATATGTTTTAACT--AAAATGAAAAAAA
* * * * * * *
1181168 ATTCAATC-TATAATCATTTATAAAGTTATAAAACCACATAAAGGGAGTAATAAGGCTTCCGAAG
126 ATT-AATCTTAAAATCATTTATAAAGTTATAAAACCACTTAAA-GCA-TGATAAAGCTTTCAAAG
* *** * *
1181232 GCCA-AAGTGACTATAAAT-GAACTTTTCTTGCCAATGGATGGCTTTCGCTTCACG-TTTCTCAA
188 G-CATGAGTGACTATAAATAG-ACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCT-AA
* * * * * ** **
1181294 GCCAAATATCCAACTATGATTTGTTTTAACCAAAAAT-AAAGCATTCTTCAA----AAAATCATT
250 GGCAAACATCCAATTATGATCTGTTTTAACCAAAACTGAAAAAAAAC-TCAACTTTAAAATCATT
* *
1181354 TATAAGATTAGAAAACCATTTAAAGCA
314 TATAAGATTATAAAACCATTTAAAGTA
* * * * * * *
1181381 AGTAACTAGGCTTTCGATGGCATGAGTGACTT-TAAATGGAATTGTT-TTGTTAACGGATGGCTT
1 AGTAACTAGGCTTTCAAAGGCATAAGTGA-TTATAAATGGACTT-TTCTTATCAATGGATGGCTT
*** ** * * * *
1181444 GCACTTCACATTTCT-AGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAAT-AAAAAAAA
64 TTGCTTCATGTTTTTCA-AGGAAAACATCCAATTATGATATGTTTTA-ACTAAAATGAAAAAAAA
* *
1181507 ATCATCTTAAAATCATTT
127 TTAATCTTAAAATCATTT
1181525 CTAAGATCGT
Statistics
Matches: 5564, Mismatches: 1268, Indels: 815
0.73 0.17 0.11
Matches are distributed among these distances:
324 4 0.00
325 27 0.00
326 6 0.00
327 134 0.02
328 231 0.04
329 74 0.01
330 23 0.00
331 87 0.02
332 125 0.02
333 36 0.01
334 13 0.00
335 93 0.02
336 173 0.03
337 359 0.06
338 859 0.15
339 1095 0.20
340 945 0.17
341 625 0.11
342 535 0.10
343 108 0.02
344 9 0.00
345 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (340 bp):
AGTAACTAGGCTTTCAAAGGCATAAGTGATTATAAATGGACTTTTCTTATCAATGGATGGCTTTT
GCTTCATGTTTTTCAAGGAAAACATCCAATTATGATATGTTTTAACTAAAATGAAAAAAAATTAA
TCTTAAAATCATTTATAAAGTTATAAAACCACTTAAAGCATGATAAAGCTTTCAAAGGCATGAGT
GACTATAAATAGACTTTTCTTATTAATGGATGGCTTTCACTTCATGTTTTCTAAGGCAAACATCC
AATTATGATCTGTTTTAACCAAAACTGAAAAAAAACTCAACTTTAAAATCATTTATAAGATTATA
AAACCATTTAAAGTA
Found at i:1181673 original size:32 final size:31
Alignment explanation
Indices: 1181609--1181677 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
1181599 GTGAATGGAT
*** *
1181609 GGCTTTTGCTTTACATTTTTTGGAGTAACTA
1 GGCTTTTGCTTTACATTTAAAGAAGTAACTA
1181640 GGCTTTTGCTTTACATTTAAAGCAAGTAACTA
1 GGCTTTTGCTTTACATTTAAAG-AAGTAACTA
1181672 GGCTTT
1 GGCTTT
1181678 CGATGGCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 19 0.58
32 14 0.42
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.43
Consensus pattern (31 bp):
GGCTTTTGCTTTACATTTAAAGAAGTAACTA
Found at i:1181877 original size:283 final size:283
Alignment explanation
Indices: 1181370--1181914 Score: 1036
Period size: 283 Copynumber: 1.9 Consensus size: 283
1181360 ATTAGAAAAC
1181370 CATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTGACTTTAAATGGAATTGTTTTGTTAAC
1 CATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTGACTTTAAATGGAATTGTTTTGTTAAC
1181435 GGATGGCTTGCACTTCACATTTCTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATA
66 GGATGGCTTGCACTTCACATTTCTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATA
* * *
1181500 AAAAAAAATCATCTTAAAATCATTTCTAAGATCGTAAAACTATTTAAAGTAGGTAACTAGGCTTT
131 AAAAAAAATCATCTTAAAATCATTTCTAAGATCATAAAACCATTTAAAGCAGGTAACTAGGCTTT
* * *
1181565 TAAAAGTATGAGTAACCATAAGTGGACCTTTTTTGTGAATGGATGGCTTTTGCTTTACATTTTTT
196 TAAAAGTATGAGTAACCACAAATGGACCTTTTTTGTGAATAGATGGCTTTTGCTTTACATTTTTT
1181630 GGAGTAACTAGGCTTTTGCTTTA
261 GGAGTAACTAGGCTTTTGCTTTA
1181653 CATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTGACTTTAAATGGAATTGTTTTGTTAAC
1 CATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTGACTTTAAATGGAATTGTTTTGTTAAC
1181718 GGATGGCTTGCACTTCACATTTCTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATA
66 GGATGGCTTGCACTTCACATTTCTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATA
1181783 AAAAAAAATCATCTTAAAATCATTTCTAAGATCATAAAACCATTTAAAGCAGGTAACTAGGCTTT
131 AAAAAAAATCATCTTAAAATCATTTCTAAGATCATAAAACCATTTAAAGCAGGTAACTAGGCTTT
1181848 TAAAAGTATGAGTAACCACAAATGGACCTTTTTTGTGAATAGATGGCTTTTGCTTTACATTTTTT
196 TAAAAGTATGAGTAACCACAAATGGACCTTTTTTGTGAATAGATGGCTTTTGCTTTACATTTTTT
1181913 GG
261 GG
1181915 GGGTAAACAT
Statistics
Matches: 256, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
283 256 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Consensus pattern (283 bp):
CATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTGACTTTAAATGGAATTGTTTTGTTAAC
GGATGGCTTGCACTTCACATTTCTAGAGGTAAACATCCAATTATAATATGTTTTAGCCTAAAATA
AAAAAAAATCATCTTAAAATCATTTCTAAGATCATAAAACCATTTAAAGCAGGTAACTAGGCTTT
TAAAAGTATGAGTAACCACAAATGGACCTTTTTTGTGAATAGATGGCTTTTGCTTTACATTTTTT
GGAGTAACTAGGCTTTTGCTTTA
Found at i:1182072 original size:172 final size:171
Alignment explanation
Indices: 1181745--1182073 Score: 405
Period size: 172 Copynumber: 1.9 Consensus size: 171
1181735 CATTTCTAGA
* * *
1181745 GGTAAACATCCAATTATAATATGTTTTAGCCTAAAATAAAAAAAAATCATCTTAAAATCATTTCT
1 GGTAAACATCCAATTATAATATGTTTTAACCAAAAATAAAAAAAAATCATCTTAAAATCATTTAT
* * * *
1181810 AAGATCATAAAACCATTTAAAGCAGGTAACTAGGCTTTTAAAAGTATGAGTAACCACAAATGGAC
66 AAGATCATAAAACCATTTAAAGCAAGTAACTAGGCTTTGAAAAGTATGAGTAACCACAAATGAAA
* *
1181875 CTTTTTTGTGAATAGATGGCTTTTGCTTTACATTTTTTGGG
131 CTTTTTTGTCAATAGATGCCTTTTGCTTTACATTTTTTGGG
* * *
1181916 GGTAAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAACATTCA-CTGTAAAATCATTT
1 GGTAAACATCCAATTATAATATGTTTTAACCAAAAATAAAAAAA-AATCATCT-TAAAATCATTT
* * * * * * *
1181980 ATAA-AGTTATAAACCCATTTAAAGCAAGTGA-TAAGGCTTTGAAAGGTATGAGTGACTATAAAT
64 ATAAGA-TCATAAAACCATTTAAAGCAAGTAACT-AGGCTTTGAAAAGTATGAGTAACCACAAAT
*
1182043 -AAACTTTTCTTGTCAATGGATGCCTTTTGCT
127 GAAACTTTT-TTGTCAATAGATGCCTTTTGCT
1182074 CCATGTTTTC
Statistics
Matches: 133, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
171 50 0.38
172 83 0.62
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
GGTAAACATCCAATTATAATATGTTTTAACCAAAAATAAAAAAAAATCATCTTAAAATCATTTAT
AAGATCATAAAACCATTTAAAGCAAGTAACTAGGCTTTGAAAAGTATGAGTAACCACAAATGAAA
CTTTTTTGTCAATAGATGCCTTTTGCTTTACATTTTTTGGG
Found at i:1182099 original size:171 final size:170
Alignment explanation
Indices: 1181748--1182123 Score: 395
Period size: 171 Copynumber: 2.2 Consensus size: 170
1181738 TTCTAGAGGT
* * * * *
1181748 AAACATCCAATTATAATATGTTTTAGCCTAAAATAAAAAAAAATCATCTTAAAATCATTTCTAAG
1 AAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAAAATCATCTTAAAATCATTTATAAG
* * * *
1181813 ATCATAAAACCATTTAAAGCAGGTAACTAGGCTTTTAAAAGTATGAGTAACCACAAATGGACCTT
66 ATCATAAAACCATTTAAAGCAAGTAACTAGGCTTTGAAAAGTATGAGTAACCACAAATGAAACTT
* * ** **
1181878 TTTTGTGAATAGATGGCTTTTGCTTTACATTTTTTGGGGGT
131 TTTTGTCAATAGATGCCTTTTGC-TTACATTTTTTGAAGAA
*
1181919 AAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAACATTCA-CTGTAAAATCATTTATA
1 AAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAA-AATCATCT-TAAAATCATTTATA
* * * * * * *
1181983 A-AGTTATAAACCCATTTAAAGCAAGTGA-TAAGGCTTTGAAAGGTATGAGTGACTATAAAT-AA
64 AGA-TCATAAAACCATTTAAAGCAAGTAACT-AGGCTTTGAAAAGTATGAGTAACCACAAATGAA
* *
1182045 ACTTTTCTTGTCAATGGATGCCTTTTGC-TCCATGTTTTCT-AAGAA
127 ACTTTT-TTGTCAATAGATGCCTTTTGCTTACAT-TTTT-TGAAGAA
* *
1182090 AAACATCCAATTATGATCTCTTTTAACAAAAAAT
1 AAACATCCAATTATGATCTGTTTTAACCAAAAAT
1182124 GAAACAAATT
Statistics
Matches: 171, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
170 4 0.02
171 84 0.49
172 83 0.49
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (170 bp):
AAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAAAATCATCTTAAAATCATTTATAAG
ATCATAAAACCATTTAAAGCAAGTAACTAGGCTTTGAAAAGTATGAGTAACCACAAATGAAACTT
TTTTGTCAATAGATGCCTTTTGCTTACATTTTTTGAAGAA
Found at i:1185368 original size:168 final size:169
Alignment explanation
Indices: 1185130--1186561 Score: 643
Period size: 170 Copynumber: 8.4 Consensus size: 169
1185120 CATGAGTAAC
* * ** **
1185130 TATAAATGGACTTTTCTTGTCAACGGATGACTTTCACTTCACATTTCCTAAAACAAACATCCAAT
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * *
1185195 TATGATATGTTTAAACTGAAAA-TAAAAAAAATT-AACTTAAAATCATTTATGAGATTAT-AAA-
65 TATGATATATTTAAAC-CAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGATTATAAAAC
1185256 CATTCTAAA-TCGAGTAACTAAG-TTTCTGAAAGCA-AGAGTGAT
129 CATT-TAAAGT-GAGTAACTAAGCTTT-TGAAAGCATA-AGTGAT
* * * * * *
1185298 TATAAATAGACTTTTCTTATCAATGGATGGCTTTGGCTTCATGTTTCCTGAGGCAAATATCCACT
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * *
1185363 TATGATATATTTTAACCAAAATTGAAAAAAATTCAACCTAAAATAATTTGTAAGATTGTAAAACC
65 TATGATATATTTAAACCAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGATTATAAAACC
* **
1185428 ATTTAAAGTGAGTAACTATGCTTTTGATGGCATAAGTGAT
130 ATTTAAAGTGAGTAACTAAGCTTTTGAAAGCATAAGTGAT
* * *
1185468 TATAAATGGACTTGTCTTGCCAATGGATGGCTTTCCTTCATGTTT-CTCAAGGCAAACATCCAAT
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTACTTCATGTTTCCT-AAGGCAAACATCCAAT
* ** * * * * * *
1185532 TATGATCTAATTT-AATGAAAAATGAAAAATATTCAATCTAAAATTATTTATAA-AGGTATAAAA
65 TATGATAT-ATTTAAACCAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGA-TTATAAAA
* * * * * * * *
1185595 CTACTTAAAGGGAGAAAC-AAGGTGTTCGAAGGC-TGAAGTGAC
128 CCATTTAAAGTGAGTAACTAAGCT-TTTGAAAGCAT-AAGTGAT
* * ** * * * **
1185637 TATAAATAGATTTTTCTTACCAATGGATTGCTTTCATTTCACGTTTCTCTAATTCAAACATCCAA
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTC-CTAAGGCAAACATCCAA
* * * * * * *
1185702 CTATGATATGTTTTAAGCAAAAATAAAAAAAA-ACAATCTACAAAAAATAATTTATAAGATTATA
64 TTATGATATATTTAAACCAAAATTAAAAAAAATTCAA-C--C-TAAAATAATTTATAAGATTATA
* * * * *
1185766 AAACTATTTATAGTGAGTAAC-AAGGCTTTCGATAGCATGAA-TGGCT
125 AAACCATTTAAAGTGAGTAACTAA-GCTTTTGAAAGCAT-AAGT-GAT
* * * * * * ** * **
1185812 T-GAAATAGACATTTCTTATTAATGGATGGCTTTCACCTCACATTTCCAAAGGCAAACAAGCAAT
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * * * * * *
1185876 TATGTTTTATTTTAGCCTAAAATGAAAAAAAA-TCATCTTAAAATCATTTCTAAGATTATAAAAC
65 TATGATATATTTAAACC-AAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGATTATAAAAC
* * * * * *
1185940 TATTTTAAGT-AGGTAACTAGGCTTCTGAAAGCATTAGTGAA
129 CATTTAAAGTGA-GTAACTAAGCTTTTGAAAGCATAAGTGAT
* * * * ** * *
1185981 CATAAATGGACCTTTT-TTGTAAATGGAAGGCTTTCACTTCACGTTT-CTAGAGATAAAAATCTA
1 TATAAATGGA-CTTTTCTTGTCAATGGATGGCTTT-ACTTCATGTTTCCTA-AGGCAAACATCCA
* * * * * *
1186044 ATTATGATCTGTTTTAACCTAAAA-TAAAAAAGCATTC-ACTATAAAATCATTTATAA-AGTTAT
63 ATTATGATATATTTAAACC-AAAATTAAAAAA-AATTCAAC-CTAAAATAATTTATAAGA-TTAT
*** * * * * * * *
1186106 AAATTAACTTAAAGTGAGTGAC-AAGGCTTTCG-ATGGATCAGTAAT
124 AAAACCATTTAAAGTGAGTAACTAA-GCTTTTGAAAGCATAAGTGAT
* * * * * * *
1186151 TGTAAATGGAGTTTTCTTGTCAATGAATGGGTTTCGCTTCACAT-TTTTC-AAGGTAAACATCCA
1 TATAAATGGACTTTTCTTGTCAATGGATGGCTTT-ACTT--CATGTTTCCTAAGGCAAACATCCA
* * * * ** * *
1186214 ATTATGATCTATTTTAAA-GAAAA-TGAAAAACATTCAACCTAAAATAAAATATGAGATTGTAAA
63 ATTATGATATA-TTTAAACCAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGATTATAAA
** * * * **
1186277 ATTATTTAAAGCGGGTAACTAGGCTTTTCGATGGCATGAA-TGAT
127 ACCATTTAAAGTGAGTAACTAAGCTTTT-GAAAGCAT-AAGTGAT
* * * * *
1186321 TATAAATAGA-TTTGT-TTGATCAATAGATGGCTTTCGCTTCATGTTTACC-AAGGAAAACATCT
1 TATAAATGGACTTT-TCTTG-TCAATGGATGGCTTT-ACTTCATGTTT-CCTAAGGCAAACATCC
* * ** * * * * ** * * *
1186383 AATTATAATCTAATTT-AATGAAAAGTGAGAAATATTCAATTTAAATTCATTTTTAA-AGTTATA
62 AATTATGATAT-ATTTAAACCAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGA-TTATA
* * * * * * * * *
1186446 AAACCACTTAAAGCT-TGCAAC-AAGGCTTTCGAAGGTATGAGTAAC
125 AAACCATTTAAAG-TGAGTAACTAA-GCTTTTGAAAGCATAAGTGAT
* * * * * * *
1186491 TATAAATAGACTTTTCTTGCCAATGAATGGCTTTTGCTTCATGTTTCTTAAGCCAAACATCCAAC
1 TATAAATGGACTTTTCTTGTCAATGGATGGC-TTTACTTCATGTTTCCTAAGGCAAACATCCAAT
1186556 TATGAT
65 TATGAT
1186562 CTGTTGTCAG
Statistics
Matches: 965, Mismatches: 236, Indels: 124
0.73 0.18 0.09
Matches are distributed among these distances:
167 4 0.00
168 126 0.13
169 188 0.19
170 361 0.37
171 151 0.16
172 6 0.01
173 26 0.03
174 94 0.10
175 9 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
TATAAATGGACTTTTCTTGTCAATGGATGGCTTTACTTCATGTTTCCTAAGGCAAACATCCAATT
ATGATATATTTAAACCAAAATTAAAAAAAATTCAACCTAAAATAATTTATAAGATTATAAAACCA
TTTAAAGTGAGTAACTAAGCTTTTGAAAGCATAAGTGAT
Found at i:1185769 original size:174 final size:169
Alignment explanation
Indices: 1185292--1185869 Score: 392
Period size: 169 Copynumber: 3.4 Consensus size: 169
1185282 TGAAAGCAAG
* * * * * * *
1185292 AGTGATTATAAATAGACTTTTCTTATCAATGGATGGCTTTGGCTTCATGTTTC-CTGAGGCAAAT
1 AGTGACTATAAATAGACTTGTCTTACCAATGGATGGCTTT-CCTTCACGTTTCTC-AAGGCAAAC
* ** * ** * * *
1185356 ATCC-ACTTATGATATATTTTAACCAAAATTGAAAAAAATTCAACCTAAAATAATTTGT-AAGAT
64 ATCCAAC-TATGATATAATTTAATGAAAAATGAAAAAAAAACAATCTAAAATAATTTATAAAG-G
* * * * * * * * *
1185419 TGTAAAACCATTTAAAGTGAGTAACTATGCT-TTTGATGGCAT-A
127 TATAAAACTACTTAAAGGGAGAAAC-AAGGTGTTCGAAGGC-TGA
* * * *
1185462 AGTGATTATAAATGGACTTGTCTTGCCAATGGATGGCTTTCCTTCATGTTTCTCAAGGCAAACAT
1 AGTGACTATAAATAGACTTGTCTTACCAATGGATGGCTTTCCTTCACGTTTCTCAAGGCAAACAT
* * * ** *
1185527 CCAATTATGATCTAATTTAATGAAAAATGAAAAATATTCAATCTAAAATTATTTATAAAGGTATA
66 CCAACTATGATATAATTTAATGAAAAATGAAAAAAAAACAATCTAAAATAATTTATAAAGGTATA
1185592 AAACTACTTAAAGGGAGAAACAAGGTGTTCGAAGGCTGA
131 AAACTACTTAAAGGGAGAAACAAGGTGTTCGAAGGCTGA
* * * * **
1185631 AGTGACTATAAATAGATTTTTCTTACCAATGGATTGCTTTCATTTCACGTTTCTCTAATTCAAAC
1 AGTGACTATAAATAGACTTGTCTTACCAATGGATGGCTTTC-CTTCACGTTTCTC-AAGGCAAAC
**
1185696 ATCCAACTATGATATGTTTTAA-GCAAAAAT-AAAAAAAAACAATCTACAAAAAATAATTTAT-A
64 ATCCAACTATGATATAATTTAATG-AAAAATGAAAAAAAAACAATCT----AAAATAATTTATAA
* * * * *
1185758 AGATTATAAAACTATTTATAGTGAGTAACAAGGCT-TTCGATA-GCATGA
124 AG-GTATAAAACTACTTAAAGGGAGAAACAAGG-TGTTCGA-AGGC-TGA
* ** * *
1185806 A-TGGCT-TGAAATAGACATT-TCTTATTAATGGATGGCTTTCACCTCACATTTC-CAAAGGCAA
1 AGTGACTAT-AAATAGAC-TTGTCTTACCAATGGATGGCTTTC-CTTCACGTTTCTC-AAGGCAA
1185867 ACA
62 ACA
1185870 AGCAATTATG
Statistics
Matches: 329, Mismatches: 61, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
168 4 0.01
169 127 0.39
170 65 0.20
171 31 0.09
173 13 0.04
174 81 0.25
175 8 0.02
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
AGTGACTATAAATAGACTTGTCTTACCAATGGATGGCTTTCCTTCACGTTTCTCAAGGCAAACAT
CCAACTATGATATAATTTAATGAAAAATGAAAAAAAAACAATCTAAAATAATTTATAAAGGTATA
AAACTACTTAAAGGGAGAAACAAGGTGTTCGAAGGCTGA
Found at i:1189420 original size:171 final size:168
Alignment explanation
Indices: 1186722--1209251 Score: 5946
Period size: 170 Copynumber: 131.8 Consensus size: 168
1186712 TATAATAGAG
* * * * ** * *
1186722 TTATCATCTGTTTTCACAAAAAATAAAAAAATTTCAACAAAAAATCATTTGTAAGATTATAAAAT
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * * *
1186787 CATTTAAAGCGAGTAACTAGACTTTTGATGGCATAAGTGACCT-TAAATGGACTTTTCTTTTTAA
65 CATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAA
* ** * * *
1186851 CGGATGGC-TTTGCTTCACATTTCTAAAGCCAAATATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * *
1186891 TTATGATCTATTTTAGCCTAAAATGAAAAAACAATTC-ATGATAAAATCATTTTTAAGATTATAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAA-AATTCAAT--TAAAATCATTTATAAGATTATAA
** * * * * * * * *
1186955 AACTGTATAAAGC-AGGTAACTAGGCTTCTGAATGTATAAGTGACCATAAATGAACCTTTTTTTG
62 AACCATTTAAAGCGA-GTAACTAGGCTT-TCAAGGCATGAGTGACTATAAATGGA-CTTTTCTTG
* ** ** ** *
1187019 TAAATGGATGGCTTTCACTTCACATTTCTGGAGGTAAACATCCAA
124 TCAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * ** *
1187064 TTGTGAT-TAGGTTTAACCTAAAATAAAAAACGTTCACTATAAAATCATTTATAA-AGTTAT-AA
1 TTATGATCT-GTTTTAACCAAAAATAAAAAAAATTCAAT-TAAAATCATTTATAAGA-TTATAAA
* * * * * ** *
1187126 TCCACTTAATA-TGAATGA-TAAGGCTTTCAAAGATATGAGTGACTATAAATGGAATTTTCTTGT
63 ACCATTTAA-AGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * ** ** *
1187189 CGATGGATGTCATTCGCTTCACATTTCTTC-AGTTAAGCATCCAA
125 CAATGGATGGCTTTTGCTTCATGTTTC-TCAAGGCAAACATCCAA
* * * * * * *
1187233 TTATGATATATTTT----AATAA-AAAAAAAATTCAACTGAAAATAATTTATGAGATTGTAAAA-
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
** * * * * * *
1187292 CATTTAAAATGGGTAACTAGGCTTTTGATGGCATGAGTGATTATAAATGAACTTGTCTTGTCAAT
65 CATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
** * * **
1187357 TAATGGCTTTCGCTTCACGTTTCTTGAGGCAAACATCCAA
129 GGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * *
1187397 TTATGATTTAATTTAA-CAAAAAGTGAAAAAAATTCAATTTAAATTCATTTATAA-AGTTATAAA
1 TTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
* ** * * * *
1187460 ACCACTTAAAGCTTGTAA-TAAGGCTTTCAAAGGTATGAGTGAGTATAAGTGGACTTTTCTTGCC
63 ACCATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * *
1187524 CATGGATGGCTTTTGCTTCATGTTTCTCAAGCCAAACATCTAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * ** *
1187567 CTATGATCTATTTTCACCAAAAATAGAAAAAATTCAACAACAAATCATTTGTAAGATTA-AAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTA-AAATCATTTATAAGATTATAAAA-
* * * * * *
1187631 CCATTTAAAGTGAGTAACTAAGCTTTTGATGGCATGAGTGACTTTAAATGGACTTTTCTTGTTAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** * ** *** * *
1187696 CAGATGGCTTTCGCTTCACATTTAAAAAGCCAAACATCTAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1187737 TTATGATCTATTTTAGCCTAAAATGAAAAAAAA-TCATTGTAAAATCATTTCTAAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAAT-TAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1187801 CTATTTAAAACGGGTAACTAAGCTTCTGAAGGTATGAGTGACCATACATGGACCTTTT-TTGT-A
64 CCATTTAAAGCGAGTAACTAGGCTT-TCAAGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCA
** * *** *
1187864 TATATATGCCTTTCATTTCATGTTTCT-AAGGAAAACA-CCTAA
127 -ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCC-AA
* * * * *
1187906 TTGTGATCTGCTTTAACCTAAAAAGAATAAACAA-TCACTATAAAATCATTTATAA-AGTTATAA
1 TTATGATCTGTTTTAACC-AAAAATAA-AAAAAATTCAAT-TAAAATCATTTATAAGA-TTATAA
* * * ** * * * *
1187969 ATCTACTTAAAATGATTGA-TAAGGCTTTCGAAGGTC-TGAGTGACTATAAATGGGCTTTTCTTA
62 AACCATTTAAAGCGAGTAACT-AGGCTTTC-AAGG-CATGAGTGACTATAAATGGACTTTTCTTG
** * * * *
1188032 TCAAT-GATTCACTTTCGCTTCACGTTTCT-AGAAGAAAACATCCAA
124 TCAATGGA-TGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * * * * *
1188077 TTATGATATGTTTTAA-CAAGAAATGAAAGAAATTCAAGTAAAAATAATTTATGAGATTTTAAAA
1 TTATGATCTGTTTTAACCAA-AAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * *
1188141 CCATTTAAAACGGGTAACTACGCTTTCGATGGCATGAGTGATTATAAATAGACTTGTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
**
1188206 TGGATGGCTTTTGCTTCATGTTTCTTTAGGCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** ** * * * * *
1188247 TTATAATCTAATTTAAAGAACAGT-AAAAAAGTTCAATTTAAATTTATTTATAA-AGTTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * * ** * * * * *
1188310 TCACTTAAAACTTGTAACAAGGCTTTCAAAGGTATGAGTGACCAGAAATGGAATTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** *
1188375 TAGATGATTTTTGCTTCACAT-TTTCT-AAGACAAACATCCAA
128 TGGATGGCTTTTGCTT--CATGTTTCTCAAGGCAAACATCCAA
* * * * ** *
1188416 TTATGATTTGTTTTAACTAAAAATGAAAAAAAACCTGAACGAAAAATTATTTATAAGATTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAA-TTCAA-TTAAAATCATTTATAAGATTATAAA
* * * * * * * * * * *
1188481 CCCGTTTAAGGCAAGCAACTAGGCTTCCATAAGCATAAGTGACTA-AGAAAGGAGTTTCCTTGTC
63 ACCATTTAAAGCGAGTAACTAGGCTTTCA-AGGCATGAGTGACTATA-AATGGACTTTTCTTGTC
* * * * ***
1188545 AAGGGATGCCTTTCT-CTTCACGTTTC-CTAGGGCAAACAAGTAA
126 AATGGATGGCTTT-TGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * *
1188588 TTATGATATGTTTAAACCAAAAATGAAACAAAATTCAACTTAAACTCA-TTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * * * *
1188652 CCATTTAAAGAGAGTAAATAGGCTTTCAAAAGTATGGGTGATTATAAATAGACTTTTCTTATGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** *
1188717 TGGATGGCTTTCACTTCATGTTTCTCAAGACAAA-ATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1188757 ATATGATCTGTTTTAACCTAAAATGAAAAAAATTTAATTTAAAATCATTTATAA-AGTTATACAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * ** * * * * * *
1188821 CTACTTAAA-TAAGCTAACAAGACTTTTAAAGGCATGAGTGACTATAAGTGGACTTTT-TCAGTT
64 CCATTTAAAGCGAG-TAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTC
* * *** * *
1188884 AATGGATGACTTTTGTTTTGCGTTT-TCGAAGGAAAATATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * ** *
1188927 TTATGATCTGTTTTAACTAAAAATGAAAAAAATTTAACCTAAAATAATTTAGGAGATTGTAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * * * * *
1188992 CATTTAAAGCTG-GTAACCAGGCTTTCAATGGTATGAGTAATTATAAATGTACTTGTCTTATAAA
65 CATTTAAAGC-GAGTAACTAGGCTTTCAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* *
1189056 TGGATGGCTTTCGCTTTATGTTTCTCAAGGCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** * * * *
1189097 TTATGATCTAATTTAA-GAAAATATGAAAAAAATTCAATTTAGATTCATTTATAA-AGTTATAAA
1 TTATGATCTGTTTTAACCAAAA-ATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
* ** * * *
1189160 ACCACTTAAAGCTTGTAACAAGGCTTTCGAAGGTATGAGTGACTATAAATGGACTTTTCTTGCCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
1189225 ATGGATGCCTTTTTCTTAATGTTTCTAAAGCCAAACATCTAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * *
1189267 CTACGATCTGTTTTCACCAAAGACAAAAAGAAATTCAATAAAAAATCATTTATAAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAA-AAATTCAAT-TAAAATCATTTATAAGATTATAAAA
* *
1189332 CCATTTAAAGCGAGTAACTAGGCTGTT-AATGGCATGAATGACTTTAAATGGACTTTTCTTGTCA
64 CCATTTAAAGCGAGTAACTAGGCT-TTCAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *
1189396 ATGGATGGCTTTTGCTTCATGTTTCTTAAGGTAAACATCTAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1189438 TTATGA-CTTGTTTAAACTAGAAATGAAAAACAAATT-AATTTAAAATCATTTATGAGATTCTAA
1 TTATGATC-TGTTTTAACCAAAAAT-AAAAA-AAATTCAA-TTAAAATCATTTATAAGATTATAA
** ** * * *
1189501 AATGATTTAAAGCGAAAAACTAGGCTTTCGAAGGTATGAGTGACTATAAATGAATTTTTCTTGTC
62 AACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * * ** **
1189566 AATGAATGGCTTTCGCTTTATGTTTCGCATTGCAAACATTAAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** * * * * **
1189609 TTATGATCTAATTTAA-CAAAAGTTGAAAGAAATTCAATTAAAAATTATTTATAA-AGTTGCAAA
1 TTATGATCTGTTTTAACCAAAA-ATAAAAAAAATTCAATT-AAAATCATTTATAAGA-TTATAAA
* * * * * * * *
1189672 ACTACTTAAGGCAAGTGACAAGGCTTACAAAGGTATGAGTGA-TCATAAACT-GACTGTTCATAT
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACT-ATAAA-TGGAC--TT--T-T
* * * * * *
1189735 CAATTGATGACATTAATTGATGGCTTTCGCTTAACGTTTC-CTAAGGAAAACATCTAA
120 C--TTG-T--C---AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * * *
1189792 TTATTATCTATTGTAACAAAAAATGAAAAAAAA-TCAACTTAAAATTATCTATGAGAATAT-AAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * * * *
1189855 CCATTTAAATCGAATAACTAGGCTTCTAAAGGTATGAGTAATTATAAATGGAATTTTCTTATGAA
64 CCATTTAAAGCGAGTAACTAGGCTT-TCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * *
1189920 TGGAAGGC-TTT-CATCTCATGTGTCACAAGGCCAAA-ATCTAA
128 TGGATGGCTTTTGC-T-TCATGTTTCTCAAGG-CAAACATCCAA
** ** * *
1189961 TTATGATCTAATTTAATGAAAAATAAAAAAAA-TCAATTAAAAATAATTTATAA-AGTTAAAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT-AAAATCATTTATAAGA-TTATAAAA
* * * * * * * *
1190024 CAACTTAAAGGGAGTAACTAGGCTTTTGAAGGTATAAGTGACCATAAATAGACTTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * **
1190089 TGGATGGCTTTCGCTTTACCTTTCTCAA-GCTAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGC-AAACATCCAA
* * * * *
1190130 CTATGATCT-TTTCTAACAAAAAATGAAAAAAATTCAA-CAAAAGTTTATTTATAAGA-T-TAAA
1 TTATGATCTGTTT-TAACCAAAAATAAAAAAAATTCAATTAAAA--TCATTTATAAGATTATAAA
* * * ** * * *
1190191 ACCATTTGAAGCTAGTAACTAGGCTTTCGATGGCATGAGTGACTAT--ATTCACTTTTCATATTA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** *
1190254 ATGGATGGTTTTTGTTTCACATTTCT-AGAGGTAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * * *
1190296 TTATGATATGTTTTAA-TAACAATTGAAAATAAAA-TCAGCTTAAAATCATTTATGAGATTAT-A
1 TTATGATCTGTTTTAACCAA-AAAT-AAAA-AAAATTCA-ATTAAAATCATTTATAAGATTATAA
* * * ** * * *
1190358 AACCATTTAAATCTAGTTACTAGGCTTTCAAAGGCATGAGCAATTATAAATAGACTTTTCTTGTG
62 AACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
** * *
1190423 AATGGATGGCTTTCACTTTATGTTTCCCAAGGCAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* *
1190466 TTATGATCTGTTTTAACCTAAAATGAAAGAAAAAAATCAATGTAAAATCATTTATAA-AGTTATA
1 TTATGATCTGTTTTAACCAAAAAT--AA-AAAAAATTCAAT-TAAAATCATTTATAAGA-TTATA
* * ** ** * * * * **
1190530 CAACCACTGGAATAGACTAACAAGTCTTTAAAAGGCATGAGTGACTATAAATACAC-TTTCTTGT
61 AAACCATTTAAAGCGAGTAACTAGGCTTT-CAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* ** * * *
1190594 CAATAGATGGCTTTCACTTCACGTATCCCAAGGCAAACATCCAA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * ** * * *
1190638 TTATAATATGCTTTAATGAAAAATAAAAAAAA-TCAAATT-AAATAATTCATAAGATTAT-AAAT
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTC-AATTAAAATCATTTATAAGATTATAAAAC
* ** * * * * * *
1190700 TATTTAAATTGAGCAACGAGGCTTTCGAAAGCATGAGTGATTATAAATGGACTTTTTTTATCAAT
65 CATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * *
1190765 GGATTGCTATCGCTTTATGTTT-TCTGAGGCAAACATCCAA
129 GGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * ** * * * *
1190805 TTGTGATATGTTTTATCCTAAACTAAAAAAAAAATCAACTTGCAATCATTTCTTATATTATTAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * *
1190870 CCACTTAAAGCAAGTAACAAGGCTTTCAAAGACATTAGTGACTATAAATGGAATTTTCTTGTTAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * ** ** *
1190935 TGGATGACTTTCACTTTACCTTTCTTTAGGCAAGCATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * ** * ** *
1190976 CTATGATCTGTTTTAACTAAAAATGAAAAAAAAAACCTAAACCCAAAATCGTTTATTGGATCATA
1 TTATGATCTGTTTTAACCAAAAAT---AAAAAAAA-TTCAA-TTAAAATCATTTATAAGATTATA
*** * * * * * * * *
1191041 AAATTGTTTAAAGTGAGTAATTAGGCTTTTTAAGGTATGAGCGACTATAAATGAAATTTCCTTGT
61 AAACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * * * * *
1191106 CAAGGGATGACTTTCGCTCCATGTTTCCCCAGGCAAACATCTAA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * * * *
1191150 TTATGATCTGTTTAAACTAAAACTGAAACAGAATTCAACTTAAACTCA-TTATGACATTATAAAT
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1191214 TCATTTACAA-CGAGTAACTAGGCTTTTGAAAGCATGAGTGATTATAAAAGGACTTTTGTTATGA
64 CCATTTA-AAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *
1191278 ACGAATGGCTTTTACTTCATGTTTC-CTAAGACAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * *
1191320 TTATGATCTGTTTTAATCTAAATTGAAAAGAA-TCTAATTTAAAATCATTTACAA-AGTTATACA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTC-AA-TTAAAATCATTTATAAGA-TTATAAA
* * ** * * * * * * *
1191383 ACTACTTAAATAGACTAACAAGTCTTTTGAAGGTATTAGTGACTATAAATGGACTTTTCATGTCA
63 ACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
1191448 ATGGATGACTTTCGCTTCACGTTTC-CTGAGGCAAATATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * ** **
1191490 TTATGTTATGTGTTAACCAAACATGAAAAAAATT-AACTTAAAATCATTTATGTGATCGT-AAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * ** *
1191553 CATTTAAATCGAGTAATTAGGCTTTTGAAGGCATAAGCCATTATAAATGGACTTCTT-TTGTCAA
65 CATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTT-TTCTTGTCAA
* * * * *
1191617 TGGATGGCTTTCGATTCATGTTTCTCGAGGTAAATATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * ** * * *
1191658 TTGTTATTTGTTTTAACTAAAATTGTAAAAAATTCAACTTAAAATAATTTACAAGATTGTAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * * *
1191723 TATTTAAAGTGAGTAACTAGGCTTTCAATGGCATGCGTGATTATAAATGGACTTATCTTGTTAAT
65 CATTTAAAGCGAGTAACTAGGCTTTCAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * * * *
1191788 GAATGGCTTTCT-CTTCACGTTTTTGAAGGCAAACATCAAA
129 GGATGGCTTT-TGCTTCATGTTTCTCAAGGCAAACATCCAA
** * *
1191828 TTATGATCTACTTTAA-CAAAAAAAGAAAAAAATTCAACCTAAAATCATTTATTAAG-TTATAAA
1 TTATGATCTGTTTTAACCAAAAATA-AAAAAAATTCAA-TTAAAATCATTTA-TAAGATTATAAA
* * * * * * *
1191891 ACCACATAAAAG-GAGTAGCAAAGCTTTCAAAGGC-CGAAGTAACTATAAATGGACTTTTCTTGT
63 ACCA-TTTAAAGCGAGTAACTAGGCTTTC-AAGGCATG-AGTGACTATAAATGGACTTTTCTTGT
* * *
1191954 CAATGGATGGGTTTTGCTTCATGTTTCTCAAGCCAAAAATCCAA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** * *** ** * ** * * *
1191998 CAATGATTTGTTCCCAGTAAAAATAAAAAAAA-TAAAAAAAAATTATTTGTAAGATTATAAAACT
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTAAAATCATTTATAAGATTATAAAACC
* * * * * * *
1192062 ATTTAAAGCAAGTAGCAAGGCTTTTCGATGGCATGAGTGACTTTAAATGAACTATTT-TTGTTAA
66 ATTTAAAGCGAGTAACTAGGC-TTTC-AAGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAA
* * ** *
1192126 CGGATGGCTTTTGCTTTACATTTCT-AGAGTCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * * * * * *
1192167 TTTTGGTCTATTTTAGCCTAAAATGAAAAAGAAATTCATTGTAAAATCATTTCTAAGATTCTAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAA-AAATTCAAT-TAAAATCATTTATAAGATTATAAA
* * * * * * * * *
1192232 ACTATTTAAAGCGGGTAACTAGGATTCCAAAGGTATGAGTGACCATTAATGGTCCTTTT-TTGTA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGG-ACTTTTCTTGTC
* *
1192296 AATGGATGGCCTTTGCTTCATGTTTCT-AGAGGTAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * * * * *
1192339 TTCTGATCTGTTTTAACCTAAAATGCAAAAACATTGAATATAAAATTATTTA-AAAAGTTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAAT-TAAAATCATTTATAAGA-TTATAAA
* * * * * * * *
1192403 TCCACTTAGAGGGAGTGA-GAGAGCTTTCGAAGGTATGAGTGACTATAAATAGAC-TTTCTTGTC
63 ACCATTTAAAGCGAGTAACTAG-GCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * ** *
1192466 AATGGATAG-TTTTCGTTTCGTGTTTCTCAAGAAAAACATTCAA
126 AATGGATGGCTTTT-GCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1192509 TTATGATCTATTTTAA-TAAACATTAAAAAAAA-TCAACCTAAAATAATTTATGAGATTGTAAAA
1 TTATGATCTGTTTTAACCAAA-AATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * ** * *
1192572 CCATTTAAAGCGGGTAACTAGGCTTTCGATGGCATAAATGATTATAAATAAACTTGTCTTATCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * ** ** * *
1192637 TGAATGACCCTCACTTCATGTTTCTTAAGGCAAACATCTAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** * ** * * *
1192678 TTATGATCTAATTTAA-TAAAAAT-TGAAAAATACAATTTAAATTTATTTATAA-AGTTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* ** * * * ** * * * * *
1192740 CCACTTAAAGCTTGTAACAAGGCTTTGGAGGGCACAAATGACTATAAACGTAATTTTCTTGTAAA
64 CCATTTAAAGCGAGTAACTAGGCTTT-CAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * *
1192805 TGGGTGACTTTTGCTTCATATTT-TCAAAGACAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * ** *
1192846 TTATGATCTATTTTAACTAAAAATGAATAAGAAAGTCAACACAAAATCATTTCTAAGATTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AA-AAAAAATTCAA-TTAAAATCATTTATAAGATTATAAA
* * * * * * * *
1192911 GCCGTTTAAGGCAAGTAACTAGGCTTTCGTAGGCATAAATGACTATAAATGGAATTTTCTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* ** * ** *
1192976 A-GAGATGACTTTCACTTCATGTTTCCCAAGGCAAATGTCTAA
127 ATG-GATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1193018 TTATGATATGTTTTAACCAAAAATTAAATAGAATTTAACTTAAACTCA-TTCTGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * *
1193082 CCATTCAAAGAGAGTAACTAGGTTTTCGAAAGCATGAGTGATTATAAATGGACTTTTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * *
1193147 TGGATGG-TTTTCACTTCATGTTTCAT-GAGGTAAA-ATCCAA
128 TGGATGGCTTTT-GCTTCATGTTTC-TCAAGGCAAACATCCAA
* * *
1193187 TTATGGTCTGTTTTAACCTAAAATGAAAAAAAATTCAATTTAAAATCATTTATAA-AGTTATACA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
* ** * * * *
1193251 ACCACTTAAATAGA-TAACCAAGTCTTTCGAAGGCATGAGTGATTATAAATGGACTTTTTTTGTC
63 ACCATTTAAAGCGAGTAA-CTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * * *
1193315 AAT-GATTGGCTTTCGCTTCATGGTTCTTAAGGAAAATATCCAA
126 AATGGA-TGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * * * *
1193358 TTATGATATGTTTTAATGAAAAA-AAAAATAAATTCAACCTAAAATAATTTATGAGATTCTAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAA-AAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * *
1193422 CCATTTAAAGCGGGTAACTAGGCTTTCGATGGTATGAGTGATTATAAATGGACTTATCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * **
1193487 TGGATAGCTTTTGCTGT-ACGTTTCTTGAGGCAAACATCCAA
128 TGGATGGCTTTTGCT-TCATGTTTCTCAAGGCAAACATCCAA
** *
1193528 TTATGATCTAATTTAACAAAAAATGAAAGAAAAA--CAATCTAAAATCATTTATAA-AGTTATAA
1 TTATGATCTGTTTTAACCAAAAAT-AAA-AAAAATTCAAT-TAAAATCATTTATAAGA-TTATAA
* * * * * *
1193590 AATCACTTAAAGGGAGTAA-TAAGGTTTTCGAAGGCCA-AAGTGACTATACATGGACTTTTCTTG
62 AACCATTTAAAGCGAGTAACT-AGGCTTTC-AAGG-CATGAGTGACTATAAATGGACTTTTCTTG
* * ** ** *
1193653 CCAATGGATGACTTTTGCTTCACATTTCTTGAGGCAAAGATCCAA
124 TCAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * * ** * *
1193698 TTGTGATATGCTTTAACCTAAACTGAAACAAATTCAATTTGCAATCATTTCTAATG-TTATTAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAA-GATTATAAAA
* * * * * * *
1193762 CCATGTAAAGCAAGTAACAAGGCTTTTAAAGACATGAGTGACTATAAATGGAAATTTT-TTATCA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGG-ACTTTTCTTGTCA
* *
1193826 ATGGATGGGTTTTGCTTCACT-TTTCTCAAGGCAAACATTCAA
127 ATGGATGGCTTTTGCTTCA-TGTTTCTCAAGGCAAACATCCAA
* * * * ** *
1193868 TTATGATCTATTTTAACTAAAAATAAAAAACTAAACTAAACCCAAAATCATTTCTAAGATTATAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAA--AAATTCAA-TTAAAATCATTTATAAGATTATAA
* * * ** * * * * * *
1193933 AGCCGTTTGAAGAAAGTAACTAGGCATTCAAAGGCATTAATGACTACAAATGGAATTTTCTTGCC
62 AACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
1193998 AAAT-GATGGCTTTTGC-TCTATAATTGCT-AAGGTAAACATCTAA
126 -AATGGATGGCTTTTGCTTC-AT-GTTTCTCAAGGCAAACATCCAA
** * * *
1194041 TTATGATCCATTTTAACTAAAAATGAAATAAAATTCAACTTAAACTCA-TTATGAA-ATTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTAT-AAGATTATAAA
** * * * * *
1194104 AATATTTAAAGTGAGTAACTAGGTTTTCGAAAG-ATTGAGTGATTATAAATGGACTTTTCTTGTG
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTC
* *
1194168 AACGGATGG-TTTTCACTTCATGTTTC-CTAAGGCAAACATCCAA
126 AATGGATGGCTTTT-GCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * ** *
1194211 TTATGAT-TGGATATACTAACAAGTCAAACATCCAATTAACCTAAAA-TGAAAAAAAATCAATTC
1 TTATGATCT-G-T-T-TTAAC----CAAAAAT--AA--AA---AAAATTCAATTAAAATC-ATTT
* * *** ** * * * * * *
1194274 AAAATCATTTATAAAGTTATACAACCA-CTTAAATATACTA-ACAAGTCTTTTGAAGGTATAAGT
50 ATAA-GA-TTATAAAACCATTTAA--AGC--GAGTA-ACTAGGC------TTTCAAGGCATGAGT
* * *
1194337 TACTATAAATGGACTTTACTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCC
102 GACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCC
1194402 AA
167 AA
* * * *
1194404 TTATGATATATTTTAACTAAAAATGAAAAAAAGA-TCAACTTAAAATCATTTATCAA-ATTAT-G
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAA-ATTCAA-TTAAAATCATTTAT-AAGATTATAA
* * * * * * *
1194466 AACCATTTAAATCAAGTAACTAGGCTTCTAAAGGTATGATTGACTATAAATGGATTTTTCTTCTC
62 AACCATTTAAAGCGAGTAACTAGGCTT-TCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
** * *
1194531 AATGGATGGCTTTCACTTCATGTTTCTCGAGACAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** * * *
1194574 TTATGAT-TGGTTTTAAGAAAAAATAAAAAAAATTTAACTTAATATCATTTATGAGATTAT-AAA
1 TTATGATCT-GTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * **
1194637 CCATTTAAAGTGAGTAACTAGGCTTTCGAAGGAATGAGTGATTAAAAATAAACTTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * *
1194702 TGGATGGCCTTCACTTTAAGTTT-TCCAAGGCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCT-CAAGGCAAACATCCAA
* * * * ** * * *
1194743 TTATGATCTGTTTTAACCTAAAATAAAAAAAAATTCACTCCACAATCATTTCGAAGTTTTTGAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAAT-TAAAATCATTTATAAGATTATAAAA
** * * * * * * *
1194808 CCACATAAAACAAGTAACTTGGCTTTCAAATGTATGAGTGACTATAAATGGAATTTTCTTATCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * *
1194873 TAGATGGCTTTTGCTTCATGTTCCTTAA-GCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1194913 TTATGATATGTTTTAACTAAAAATGAAAAAAAAATTCAACCTAAATTCATTTCTAAGATTATAAA
1 TTATGATCTGTTTTAACCAAAAAT--AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAA
** ** *
1194978 ATTATTTAAAATGAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTATCTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** ** * *
1195043 AAGGATGGGTTTCACTTCATGTTTCTTGAGGTAAACATCTAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
**** ** * * * * *
1195085 TTATGATAACATTTAATTAAAAATGAAAAAGAGTGCAAGTTAAACTCATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * *
1195150 CCGTTTAAATCGAGTAACTAGGCTTTCGAAAGCATGAGTGAATATAAATCGACTTTTTTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * *
1195215 TAGATGGCTTTCACTTCATGTTTC-CTGAGACAAACAT-CAA
128 TGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
** ** * *
1195255 TTTATGATCCATTTTAACTTAAAATGAAAAAAAAATCAATTTAAAATCATTTAT-AGCATTATAC
1 -TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAG-ATTATAA
* * ** * * * * *
1195319 AACGACTTAAATTGAGTAACAAGGCTTTCAAAGGCATTAATGACTATAAATTGACTTTTTTTGTC
62 AACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
1195384 AATAGATGGCTTTAGCTTCATGTTTCTCAAGACAAACATCCAG
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * *
1195427 TTATGATCTATTTTAACCAAAAATGAGAAAAATTTAGCTTAAAATCATTTAT-AGCATTATACAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAAG-ATTATAAAA
* * * * * * * *
1195491 CGACTTAAATCGAGTAACAAGGCTTTCAAAGGCATGACTAACTATAAATTGACTTTTTTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** * *
1195556 TGGATGGCTTTTGCTTCACATTTCTCAAGGAAAACATCCAG
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * ** *
1195597 TTGTGATCTATTTTAACCAAAAATGAGAAAAAA-TCAGCTTAAAATTATTTATGGGACTAT-AAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAA
* * * * * * * * *
1195660 CAATTT-AAGTTGAGTAACAAGGCTTTTAAAGCTATGAGTGATTATAAGTAGACTTTTCTTATCA
64 CCATTTAAAG-CGAGTAACTAGGCTTTCAAGGC-ATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *
1195724 ATGGATGGCTTTCGCTTCACGTTTCTTAAGGCAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1195766 TTATGATATGTTTTAACAAAAAATGAAAAAAAGTTGAACTTAAAATTATTTATGAGATTATAAGA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * ** * * ** * *
1195831 CCATTTAACGCCAGTAACTAAACTTTCGATGGCATAAGTGA-TCATAAATAAACTTTTCATATCA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACT-ATAAATGGACTTTTCTTGTCA
* * ** *** * * * *
1195895 ATGGTGTTGGGGATTTAACTT-ATG-TTAAGATGACTTATACATAGCAGA
127 AT-G-GAT--GGCTTTTGCTTCATGTTTCTCAAGGC--AAACAT-CCA-A
* * * * ** ***** * * * * * * *
1195943 ATATTAT-TAAAATTATAATCTCCTAAGCCAT-GGGTCAGTTTAATTGAAACTAATCTAGAAAAA
1 TTATGATCT---GTTTTAA---CC-AA-AAATAAAAAAAATTCAATT-AAAATCATTTA-TAAGA
** * * * * ** *** * *
1196006 CCACAAGAGA-AATTTTGACATACCTGA--AAGTCTGCTTTTTTTGG--TGGAGT-CCTCT---T
56 TTATAA-A-ACCA-TTT-A-A-AGC-GAGTAACTAGGC-TTTCAAGGCAT-GAGTGACTATAAAT
* ** * ***** * ** * ** * * *
1196062 GG-TTTTTCATT-TCAACTTTTAT-ACACCAAC-T-AGGACCTATCAAACCATA-GTAGCACA
112 GGACTTTTC-TTGTCAA--TGGATGGCTTTTGCTTCATG-TTTCTCAAGGCAAACAT-CCA-A
* * * * ***** * *** ** ** * *
1196119 GT-TGTTCTGCCTCTAA-TGGTGATCCACATAGCGATT-TGTCGAAATC-TCTACATTAAAATTA
1 TTATGATCTG-TTTTAACCAAAAAT--A-AAAAAAATTCAATTAAAATCAT-T-TA-TAAGATTA
* * * ** * * **
1196180 TGTGAATCC--CT-AAGCTGAAGTTTGTGCTAGCAAACTTTCAA--CTTTGAGCTCCCT-T---T
59 --TAAAACCATTTAAAGC-G-AG--T-AACTAG---GCTTTCAAGGC-ATGAG-TGACTATAAAT
* * * * * * * * * **
1196236 GTG-CTTCTCTCTT-T---T---TGGC-TATGATCCTATCTTAACACACGAGAAAATAAAACAA
112 G-GACTT-T-TCTTGTCAATGGATGGCTTTTGCTTC-ATGTT-TCTCAAG-GCAAA-CATCCAA
* * * * ** * *** ** * * * ***
1196291 -AACTGTTCTATATTT--TCAAGAGGTGGATAAGCGATTCTTTTATATAGTGAATTGACCTACTT
1 TTA-TGATCTGT-TTTAACCAA-AAAT--AAAAAAAATTCAATTA-A-AAT-CATTTA--TAAGA
** * * * * ** * * *
1196353 TATATCCAACAAGGATTATAAAATGTCTAGGGCTAATTGGGCCTATATTTAATACTTTA-TCAAA
56 T-TAT--AA-AACCATT-T-AAA-G-C--GAG-TAACTAGG-C--T-TTCAAGGCATGAGT--GA
* * * ************ * ** * **** * *
1196417 CCAT-ATTTGA-TTTNNNNNNNNNNNNNATTGGATTAAGCCTTTAT-AAAATCAATTAG-ATCAC
104 CTATAAATGGACTTT-TCTTGTCAATGGA-TGGCTTTTG-CTTCATGTTTCTCAA--GGCA-AAC
1196478 ATCCAA
163 ATCCAA
* ** * * ******* ** ******
1196484 TTGAACTCAAAT-TCATTTGA-CAATTCACCTTATGTGTGTGACCCNNNNNNNNNNCAA-CATGT
1 TT--A-T--GATCTGTTTTAACCAA---A---AATAAAAAAAATTC-----AATTAAAATCAT-T
* * * * * * * ** ** * *
1196546 TGGTAATAAATATAAATTAATTCAATTAAGAACTTA-TATTTA-TATTT-ATAGATCATGAGCAG
49 T-ATAA-GATTAT-AA--AA-CCATTTAA-AGC-GAGTAACTAGGCTTTCA-AG-GCATGAG-TG
** ** * ** *** * * * ***
1196608 CATCTAGCAATACATCATGACCACTCAAATGTTAGGA-GAGCCAATATGATTTGACTAACCTT-T
103 -A-CTATAAATGGA-CTTTTCTTGTC-AA---T-GGATG-G-C-TTTTG-CTT--C-ATGTTTCT
* * ** *
1196671 CAATGTATAGTATCTCAG
153 CAAGGCA-AACATC-CAA
* * * * * * **
1196689 TGTAATTCGATCCT-TTCATCATATATCC-CAGATAGATAGAAA-GCTAGGATCAATGTCTACTT
1 T-T-A-T-GAT-CTGTT--T--TA-A-CCAAAAATA-AAAAAAATTC-A--ATTAAAATC-A-TT
* * * * ** * *** * * * * *
1196751 TTTAA-CTTATCCATATTAGTCTTACAGCTTCT-ATTTGACCTATCAAGATTGTC-TAAGCTAAA
49 TATAAGATTAT-AAAACCA-T-TTAAAGCGAGTAACTAG-GCTTTCAAG---G-CATGAG-T---
* * * * *** * * * *** ** *
1196813 GACTTTTAAT-CAATATAAGTTAAGAGCAAATGAGATATGTCCCCTTTAAATCA-GTTGGGGT-G
102 GACTATAAATGGACT-TTTCTT--G-TC-AATG-G--ATG--GCTTTTGCTTCATGTT--TCTCA
* * *
1196875 ATG-AATCGTCTCTAGA
155 AGGCAAACATC-C-A-A
* * * * * **** ** * ** * ** * *
1196891 CTACTCAT-TCATCTTCA-C-GTGTTTCATACCATGC--CCAAAAGCACCTTGTTTAAGCATCTG
1 TTA-TGATCT-GTTTTAACCAAAAATAAAAAAAATTCAATTAAAATCA--TT-TATAAG-AT-T-
* * * ** * * * * * * * *
1196951 GT--CATC-TCCAAA-CGTGT-A-GAGG-TGAAATCAAAGCATGATAATTCACATACAAAAT-AA
58 ATAAAACCATTTAAAGCGAGTAACTAGGCT---TTCAAGGCATG---AGTGAC-TA-TAAATGGA
** * * ** * * * * *
1197008 C--TTGGTATCACAAGTCTCAGG--ATTACTTACA--TTACT-AA--C--ATAT-GAGA
115 CTTTTCTTGTCA-ATGGAT--GGCTTTTGCTT-CATGTTTCTCAAGGCAAACATCCA-A
* * ** * * ** *** *
1197055 GTAT-ATTTG-TAGACACTTGAGTGAAATACCAAATGAAGCTCTC-ATGGCGAGTCATGTTCAAT
1 TTATGATCTGTTTTA-AC--CA--AAAATA--AAA--AAAAT-TCAAT-TAAAATCAT-TT--AT
* *** * * ** *
1197117 GAACTTG-TTCTTCAACAAGCACCCACATATTATCCCTTAGTATCTCACATACTTT-AA--CCT-
52 -AA---GATT-AT--A-AA--A--C-CAT-TTAAAGC-GAGTAACT---AGGCTTTCAAGGCATG
* * * * * * * * * * * **
1197177 A-TGA-GATCAATTG-C-TTACTT-TTAAAGTAAGG---TCGCTTAGCATG-TAC-C-AGCCTTT
99 AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTT--CATGTTTCTCAAGGC-AA
*
1197231 A-A-CCAT
161 ACATCCAA
* * ** * * *
1197237 TGTCAATG-TCCTTATTCTTGA-CAATACAATGACTAGGAACA-T-AGTTAGGAA-CAAGGTTT-
1 T-T--ATGAT-C-TGTT-TTAACCAA-A-AAT-A--AAAAAAATTCAATTA-AAATC-A--TTTA
* * * ** * *
1197296 T--GATACATAAGAATCTCATAATTATAACCTTTA-TAA-T-TTCTTTACAAAGCCAT-TGTG--
51 TAAGAT-TATAA-AA-C-CAT--TTA-AAGC--GAGTAACTAGGCTTT-C-AAGGCATGAGTGAC
* ** * * * * * * *
1197353 T-TCCAA-GGACTTTATCTACTTAA--G-T--C-TCT-CATAACTCTTTAT-AA-ACAAAC-T-C
105 TAT-AAATGGACTTT-TCTTGTCAATGGATGGCTTTTGCTTCA-TGTTTCTCAAGGCAAACATCC
1197405 --
167 AA
* * ** *** * * * * * * ** *
1197405 GT-GGATAAAGAAATACCTCATATATTATATAAAATATCTA-TAATGT-ATTTA-ACATGA-AAT
1 TTATGAT-CTGTTTTAAC-CA-AAAATAAAAAAAAT-TCAATTAAAATCATTTATA-A-GATTAT
** * * * *** *** *** * * ** * **
1197465 ATGACTAATTAATGC-AGTGTTTTA--CAAGCAAAAAATTGATTGGC-ATGCA-GGGCTTACACT
60 AAAACCATTTAAAGCGAGT-AACTAGGCTTTCAAGGCA-TGAGTGACTATAAATGGACTT-TTCT
* * * ** * * *
1197525 AG-CAAATGGATAGCCTACGCTTCACGTTTC-CTGAGGCAAACATTCAA
122 TGTC-AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * * *
1197572 TTATGATCTATTTTAACCCAAAATGAAAATAATTCAATTGACAACCATTTCTAAGGTTATAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT-AAAATCATTTATAAGATTATAAAAC
* * * ** *
1197637 CATGTAAAGCAAGTAA-TAAGGCTTTCAAAGGCGTGAACGACTATAAATGGGA--TTTCTTTATC
65 CATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAAT-GGACTTTTC-TTGTC
** * *
1197699 AATGGATGGCTTTCCCTTCACGATTT-TCAAGGCAAATATCCAA
126 AATGGATGGCTTTTGCTTCATG-TTTCTCAAGGCAAACATCCAA
* * * * * * * *
1197742 TTATGATATATTTT-----AATA-AAAAAAAACTCAACCTAAAATCAATTATAAGTTTATTAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * ** *
1197801 TATTTAAATCGAGTAACTAGACTTTTAAAGGCATGAGTGACTATAAATCAACTTTTCTTGTCGA-
65 CATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** * * *
1197865 GAGATGGCTTTTGTTTCACATTTCCCAAGGTAAACATCTAA
129 G-GATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * ** * * * * * * *
1197906 TTATGATATGATTTAATGAAAAATGAATAAGAGTTTAGCTTAAACTCATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1197971 CCA-TTAAAACGAGTAACTAGACTTTCAAAAGTATAAGTGAATATACATGGACTTTTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * *
1198035 TGGATCGCTTTTACTTCATGTTTCTTAAGGTAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1198076 TTATGATATATTTTAACCTAAAATGAAAAAAAA-TCAATTTAAAATCATTTAT-AGCGTTATACA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAG-ATTATAAA
** * ** * * * *
1198139 ATGACTTAAA-TAAGCTAACTAGTCTTTCGAAGGTATGAATGACTATAAATGGACTTTTTTTGTC
63 ACCATTTAAAGCGAG-TAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * *
1198203 AATGGATGGCGTTTACTTCATGTTTCT-AGAGGTAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * * *
1198246 ATATGATCTGTTTTAACCAAGAATAAAACAAAAGTT-AGCA-TAAAATCATTGATGACATTAT-A
1 TTATGATCTGTTTTAACCAAAAATAAAA-AAAA-TTCA--ATTAAAATCATTTATAAGATTATAA
* * * * * * * * * *
1198308 AACCATTTAAATCAAGTAACAAGGCTTTTGAAGGTATGAATGATTATAAATAGATTTTTCTTCTC
62 AACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* *
1198373 AATGGATGGCTTTCGCTTCATTGTTTCT-AAGGAAAACATCCAA
126 AATGGATGGCTTTTGCTTCA-TGTTTCTCAAGGCAAACATCCAA
* * * * * * * * * **
1198416 TTATGATATATTTTAACTAACAATGAAAAAAATTTTAACTTAAAATTATTTATGACATTATAAGG
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * *
1198481 CCATTTAAAGC-AGGTAACTAGGCTTTTTGATGGCATAAGTGATTATAAATGAACTTTTCTTG-C
64 CCATTTAAAGCGA-GTAACTAGGC--TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * ** * *
1198544 AAATGAAAGGCTTTCACTTCACGTTTCACCTAA---AATGA-AT--AA
126 -AATGGATGGCTTTTGCTTCATGTTTC-TC-AAGGCAA--ACATCCAA
** * * * *** * * * *** * * * *
1198586 AAAAGAGT-TATTTTATATTCATTTATAGAGTTATAAAACT-ACTTAAAGGGACTAACAAGGCTT
1 TTATGA-TCTGTTTTA-A-CCAAAAATA-A---AAAAAATTCAATTAAAATCATTTATAA-GATT
* * ** * * * * * *** * * * * *** ** *
1198649 TTGAAGGCA--T-GAGTGATTATA-AATGGATTTTTTTGTCAAT-ATATGGCTTTCGCTTCACAT
58 ATAAAACCATTTAAAGCGAGTA-ACTA-GG-CTTTCAAGGC-ATGA-GTGACTATAAATGGACTT
** ** *** * * * **** ** * *
1198709 TTCTCAATACAA-ACATCAAATTATGATCTAAT-TTAAGGAAAAATGAAAAAAAAT-TAA
118 TTCT-TGT-CAATGGAT-GGCTTTTGCT-TCATGTT---TCTCAA-G-GCAAACATCCAA
** * * * * * * * * * * * * * *
1198766 TTTAAAATC---ATTAA--TAAAGT-TATAAAATT-ATTTAAAGTGAGTAACAAGGTTGT-CAAC
1 -TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTAAAATCATTTATAAGATTATAAAAC
* ** * * * ** ** * ** *
1198823 GACAT-AAGTGACTATA-AATGGACTTTTCTTGTAAATG-GATGACT-T---TTG-CTTCACATG
65 CATTTAAAGCGAGTA-ACTA-GG-C-TTTCAAG-GCATGAG-TGACTATAAATGGACTTTTCTTG
* * * ** * * * *
1198880 TCCCAA-GG-TAGACATCTAATT-ATGATTTTTTTAATGAG-AAATGAAACCAA
124 T--CAATGGAT-GGCTTTTGCTTCATG--TTTCTCAA-G-GCAAA--CATCCAA
* * ** ** ** * * *** *
1198930 TT-TCAAC----TTAA--AATCAT-TTATGAGTT-TA-TAAAATCATTTA-AAGAAGGTAACTAG
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTAAAATCATTTATAAGATTATAA--AA
* * * * * * ** * * *
1198984 GCTTTTGAAGGCAAG-AA-T--GATTAT-AA---ATGGACTTTTCTAGTGAATGGA--ATCCTT-
64 CCATTT-AAAGCGAGTAACTAGGCTT-TCAAGGCAT-GA-GTGACTA-TAAATGGACTTTTCTTG
** *** ** * ** *
1199038 TC-AT---T---TTACAG-TTCATGAGGCAAACATGCAATTAT--GA
124 TCAATGGATGGCTT-TTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * *** *** * * * *
1199075 -TCTG-TTTGAACT-A--AAAATGGAAAAAAATTTAACTTAAAATTATTTATGATATTATAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * * * * * * *
1199135 TATTTAAAGTGGGCAATTATGCTTTTGATGGCATGAGTGATTATAAATAGACTTTTCTTG-CGAA
65 CATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AA
* * * *** * ** *
1199199 TGAAAGGCTGTCATTTTATGTTT-T-ATGATCCAAACATTCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCA--AGGCAAACATCCAA
* * * * *
1199240 TTATGAT-TTTTTTAACCTAAAACAAAAAAAATTCATCTTAAAATCATTTATAAGGTTATAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAAC
* * * * * *
1199304 CACTTAAAGCGACTAACAAGGCTTTCGAAGACATGAGT-AGCTATAAATGGACTTATCTAGTCAA
65 CATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGA-CTATAAATGGACTTTTCTTGTCAA
* * * *
1199368 GGGATGGCTTTAGCTTCATGTTTCCCTAAGGTAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * *
1199410 TTATGATCTATTTTAACCTAAAAT-AAAAAAATGCAATTGACAATCATTTCTAAGGTTGTAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT-AAAATCATTTATAAGATTATAAAAC
* ** * * * * * * * * * * *
1199474 AACATAAAACAACTAACAAGGCTTTCGAAGGTATTAGTGGCTATAAATAGAATATTCTTGTCTAT
65 CATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * *
1199539 GGATGGCTTTTGCTTCATGTTTTCTTAA-GTAAATATCCAA
129 GGATGGCTTTTGCTTCATG-TTTCTCAAGGCAAACATCCAA
* * * * * * *
1199579 TT-TGATCTATTTTAACTAAAAATGATAAAAGAAGTCAACCTCAAATCATTTATAAGATTATCAA
1 TTATGATCTGTTTTAACCAAAAAT-A-AAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAA
*** ** * * *
1199643 ATTGTTTAAAATGAGTAACTAGGCTCTCAAAGGCATGAGTGACTATCAATAGACTTTTCTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *** * *
1199708 ACGGATGACTTTCATTTCACGTTTCT-AGAAGCAAACAT-CATA
127 ATGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCA-A
* * * * * * * * *
1199750 TTATGATTTGTTTTAA-TAGAAAGTGAAAGAGAATTTAAATGAAACTCATTTATGAGATTATAAA
1 TTATGATCTGTTTTAACCA-AAAAT-AAA-AAAAATTCAATTAAAATCATTTATAAGATTATAAA
** * * * * *
1199814 ACCATTTAAAGTAAGTAACTAGACTTTTGAAAGG-ATGAGTGATTATAAATGGATTTTTCTTGTA
63 ACCATTTAAAGCGAGTAACTAGGC-TTT-CAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
** *
1199878 AATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAATATCCAA
126 AATGGATGGCTTTTGCTTCATGTTT-CTCAAGGCAAACATCCAA
* * * * * * *
1199921 CTATGATCTATTTTAATCTAAAATAAAAGAATTTCAATTTAAAATCATTTATAA-AGTTATACAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* ** * * * * *
1199985 CCACTTAAATAG-GCTAACAAGGCTTTTGAAGGCATGAGTGGCTATAGATGGACTTTTCTTATCA
64 CCATTTAAAGCGAG-TAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** ** **
1200049 ATAGATAGCCATTAATTCATGTTTC-CTAAGTTAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * *
1200091 TTACGATCTTTTTTAACCTAACATCAAAAAAATTTCAACTTAAAATCGTTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * *
1200156 CCATTTAAAAAG-GA-TAACTAGCGTTTTAAAGGCATGAGTGATTATAAATAGACTATTCTTGTG
64 CCATTT--AAAGCGAGTAACTAG-GCTTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * ** * * * *
1200219 AATGGAAGACTTTCACTTTAAGTTTCACAAGGTAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * * *
1200262 TTATGATTTATTTGAACAAAAAATGAAAAAAATTCAACTTAAAATTATTGATGAAG-TTGTAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTAT-AAGATTATAAAA
* ** * ** * * * *
1200326 CCATTTAAAGTGAGTAACTATGATTTTGATA-GCAAAAGTGATTATAAATGGACTCTTCTTATGA
64 CCATTTAAAGCGAGTAACTA-GGCTTTCA-AGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * *
1200390 ATGGAAGGCTATTGCTTCAAGTTT-TACAAGGCAAACATTCAA
127 ATGGATGGCTTTTGCTTCATGTTTCT-CAAGGCAAACATCCAA
* * * ** * *
1200432 TTATGTTCTGTTTTAGCAAAAAATGAAAAAAAATTCTTCTTCAAATCATTTATAAAATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTC-AATTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1200497 CCACTTAAAGTGACTAACAAGGATTTCAAAGACATGAGTGATTATAAATGGACTTTTCTAGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** ** * ** * * **
1200562 TGAATATCTTTTGCTTCACATTTCCCATTGTATACATTAAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * * * *
1200603 TTATAATCTAATTTAACGTAAAACT-AAAAAAATTTAATTTAAAATCATTTATAA-AGTTTTAAA
1 TTATGATCTGTTTTAAC-CAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
* * * * ** * * * * * * *
1200666 ATCACTTAAAGTGAGGAA-TAAAGTTTTTGAAGGAATAAATGACTATAAATAGACTTCTCTTATC
63 ACCATTTAAAGCGAGTAACT--AGGCTTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* ** * * **
1200730 AATGGATGGCTTTTGCTTTACATTTCTCAATGTAAACATTAAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** ** * *
1200773 TTATAATCTAATTTAAGGAAAAATGAAAACAAATTCAATTTAAAATCATTAATAA-AGTTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
** * * ** * * *
1200837 ACCA-CAATAAGTGAGTAACAAGATTTTCAATGACATGAGTGACTATAAATGGACTTTTCTTATA
63 ACCATTTA-AAGCGAGTAACTAGGCTTTCAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTC
*
1200901 AATGGATGGCTTTTGCTTCATGTTTCCCAAGGCAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * * * * * *
1200944 TTATGATCTTTTTTAATGAGAAATGAAAAAAATTTTAAATTAAAATCATTAATGAGACTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAA-ATTCAATTAAAATCATTTATAAGATTATAAAA
** * * * * * * * * * *
1201009 TGA-TTGAAGCCAGTAACTAGGCTTTTGAAGGTAAGGGTGATTATAAATAGATTTTTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** ** * * * *
1201073 TTGAAAGCTTTCACTTTACGTTTCAT-GAGGTAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTC-TCAAGGCAAACATCCAA
* * * * *
1201114 TTATGATCTGTTTGAACCAAAAATAAAAAAAA--AAACTTAAAATTATTTATGATATTATAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * ** ** * * *
1201177 CATTTAAAGCTAGTAACCATACTTTCGATA-GCATGAGCAATTATAAATAGATTTTTCTCT-TCA
65 CATTTAAAGCGAGTAACTAGGCTTTC-A-AGGCATGAGTGACTATAAATGGACTTTTCT-TGTCA
* * * *
1201240 ATGGAAGG-TTTTCACTTCATGTTT-TACAAGCCAAACATTCAA
127 ATGGATGGCTTTT-GCTTCATGTTTCT-CAAGGCAAACATCCAA
* * * * * *
1201282 TTATGATTTGTTTTAATCTAAAACAAAAACAA-TCATCTTAAAATCATTTATAACG-TTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAA-GATTATAAAA
* * * * * *
1201345 CCACTTAAAGTGACTAACAAGGCTTTCGAAGGCATGAATGACTATAAATGGACTTCTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * * *
1201410 GGGATGGCTTTCACTTCATGTTTCCCTATGCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * * * *
1201451 TTATGATCTTTTTTAACTTAAAATGAAAAAAAAATGT-AGTTGACAATCATTTATATGGTTATAA
1 TTATGATCTGTTTTAACCAAAAAT--AAAAAAAAT-TCAATT-AAAATCATTTATAAGATTATAA
* ** * * * * * * * * *
1201515 AACAACATAAATCAAGAAACAAGGCTTTTGAAGGCATTAGTGGCTATAAATGAAATTTTCTTGTC
62 AACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * * *
1201580 AATGGATGGCTCTTGCTACATGTCTACT-GAGGAAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGT-TTCTCAAGGCAAACATCCAA
* * * * * * * * *
1201623 TTCTTATATGTTTTAACTAAAAATTTAAGAAAAAGTCAACCTAAAATCATCTATAAGATTAAAAA
1 TTATGATCTGTTTTAACCAAAAA--TAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAA
* * * * * * *
1201688 ACTATTTAAAGTGAGTAATTAGGCTTTCAAATGCATGGGTGACTATCAATAGACTTTTCTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* ** * **
1201753 AGGGATGGCTTTCATTTTTCA--TTTCTCAAGGAAAACATCTTA
127 ATGGATGGCTTT--TGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * *
1201795 TTATGATCTGTTTTAA-TATAAAATAAAAAAAATTCAACTTAAACTC-TTTAATGAGATTATATA
1 TTATGATCTGTTTTAACCA-AAAATAAAAAAAATTCAA-TTAAAATCATTT-ATAAGATTATAAA
** * * ** * *
1201858 ACCATTTAAAGTTAATAACTAGGCTTTCAAAAAG-ATGAGTGTTTATAAATAGACTTTTCTTGTT
63 ACCATTTAAAGCGAGTAACTAGGCTTTC--AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
**
1201922 AATGGATGGCTTTCACTTCATGTTT-TCTAAGGCAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * *** * * * * *
1201965 TTATGGTATGCTTTAATTTAAAATGAAAACAATTCAATTTAAAATTATTTATAA-AGTAGTACAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTA-TAAAA
* * ** * * * * *
1202029 GCACTTAAATAGATTTA-TCAGGCTTTTAAGGGCATGAGTGACTATAGATGGACTTTTCTTTTC-
64 CCATTTAAAGCGAGTAACT-AGGCTTTCAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * *
1202092 ATGGATGGGTTTTGCTTCATGCTTCTCAA-GTAAAGCATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAA-CATCCAA
* * * * *
1202134 TTATGATATTTTTTAACCTAAAATGAGAAAAATTCAACTTAAAATCATTTATAAGATTACT-AAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTA-TAAAA
* * * * * * * ** *
1202198 CCGTTTAAAGAGGGTAACAAGCCTTTTGAAGGCATGAGTGATTATAAATGGACTACTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** ** * * *
1202263 TGGAAGGCTTTCACTTCAACTTTC-AAGAGGCAAATATCTAA
128 TGGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * ** * * *
1202304 TTATGATCTGTTTTAACAAAAAATGAAAAAAATTCAAATTAGGATTATTGATGAAG-TTGTAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTC-AATTAAAATCATTTAT-AAGATTATAAAA
* * *
1202368 CCATTTAATGC-AGGTAACTAGGCTTTTGATGGCATGAGTGA-TAATAAATGGA-TGTTTCTTGT
64 CCATTTAAAGCGA-GTAACTAGGC-TTTCAAGGCATGAGTGACT-ATAAATGGACT-TTTCTTGT
* * * * * * **
1202430 GAATGGAAGACTTTCGCTTCATGTTTCAT-GAGGCAGACATTTAA
125 CAATGGATGGCTTTTGCTTCATGTTTC-TCAAGGCAAACATCCAA
* * * * *
1202474 TTATGATATGTTTT-AGCATAAACAAAAAAAATCTTC--TTAAAATTATTCCTA-AAG-TTATAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAA--TTCAATTAAAATCATT--TATAAGATTATAA
* * * * * * *
1202534 AACCAATTAAATCGACTAACAAAGCTTTTGAAGGCATGAGTGACTATAAATGGAC-TCTCTTTGT
62 AACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTC-TTGT
* * * ** * * *** * *
1202598 CAATAGATGCCTTTCGCTTCATAATGCCCAATTTAGACATCAAA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** **** * * * * *
1202642 TTATGATCTAATTTAATGTGAAATTAGAAAATTTTAATTTAAAATCATTTATAA-AGTTTTAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * * * * * * * *
1202706 CCACTTAAAGCAAGTAA-TAAGGTTTTCGATGGCATGCGTGACTGTAAATAGATTTTTTTTGTCA
64 CCATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
** *
1202770 ATGGATGGCTTTCACTTCATGTTTCTCAAGGCAAACATCAAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1202812 TTATGATATGTTTTAACCAAAACTAAAAGATATTCAACTTGAAGTCATTTATGAGATTAT-AAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * * * *
1202876 CATTTAAAGTGAGTAA-TTGAGCTTTCGAAGGTATTAATGACTATAAATGGACTTTTCCTATCAA
65 CATTTAAAGCGAGTAACTAG-GCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* *** * *
1202940 GGGATGGCTTTCATTTCATGTTTCTCAAGCCAAACATCTAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1202981 TTATGATATGATTTAATCAAAAATTAAAAATAGTTCAACTTAAAGTCATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* ** * * * *
1203046 ACATTTAAAGTTAGTAACTAGGCTTTCGAACGCATGAGTGAATATAAATAGACTTTTCTTGTAAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * * *
1203111 TGGATAGCTTTCACTTCATGTTTCTCGAGACAAACATCAAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * ** * * *
1203152 TTATCATCTATTTTAACTTAAAATGAAAAAAAA-TCAATTTAAAGTCATTTAT-AGTGTTATACA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAG-ATTATAAA
* * * * * * * *
1203215 ACAACTTAAATCGACTAACTAGGCTTTTGAAGGTATGAGTGACTATATATGGACTTTTTTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
** *** * *
1203280 ATGGATGGCTTTCACTTCATGTTTCTTGGGGTATACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1203322 TTATGATCTATTTTAACTAAAAATAAAAAAAAATTTAGCTTAAAATCATTTATGAGATTAT-AAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAA
* * * * * * * * *
1203386 TCATATAAATCGAGTAACGAGGCATTCAAAAGCATGAGTGATTATAAATGGAGTTTTCTTATCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * *** * *
1203451 TGGATGACTTTTCCTTCA-CAATCTCTAAGGTAAACATTCAA
128 TGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * * * *
1203492 TAATGATATGTTTTAACCTAAAATGAAAAAAAAATCAATTTAAAGTCATTCATAAG-TTGTAGAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* ** * * * * * ** *
1203556 CCACTTATGGCAAGTAACGAGGCTTTTCAAGTCATAAGTAAAGATAAATAGACTTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
*
1203621 TGGATGGCTTTTGCTTCATGTTTC-CTAAGGCAAACAACCAA
128 TGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * *
1203662 TAATGATATGTCTTAACTGAAAATTAAAAAAAAATTCATCTTAAAATCATTTATAA-AGTTATAA
1 TTATGATCTGTTTTAAC-CAAAAAT-AAAAAAAATTCA-ATTAAAATCATTTATAAGA-TTATAA
* * * * * * * *
1203726 AACCACTAAAAGTGAGTAAC-ATGGCGTTCGAAGGCATGGGTGATTATAAATGGAGTTCTCTT-T
62 AACCATTTAAAGCGAGTAACTA-GGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* *
1203789 CCAATGGATGGCTTTTGCTTCATGTTTCTCAACGTAAACATCCAA
125 -CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * *
1203834 TTATGGTCTGTTTTAACCAGAAATAAAAAATAATTCAACTCAAAATTATTTATGAGGTTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAA-AATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * ** * * *
1203899 TCATGTCAAGTGAGTAACTAGGATTTCGAAGGCATGAACGGCTATAAATAGACTTTCACTTGTCA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTT-TCTTGTCA
** *
1203964 ATGGATGGCTTTCACTTCACGTTTCTCAAGGCAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * ** * * *
1204006 TTATTATTTACTTTCACCAAAAATTTTAAAAAAAAACCTCAACCTAAAATCATTTATAAGATTAT
1 TTATGATCTGTTTTAACCAAAAA---T-AAAAAAAA-TTCAA-TTAAAATCATTTATAAGATTAT
* * * *
1204071 AAAACCAGTTAAAGCAAGTAATTAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTG
60 AAAACCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTG
** * * * * **
1204136 AAAAAGGATGGCTTTTGTTTTAT-TTATCCTGATA--CAAACATTTAA
124 TCAATGGATGGCTTTTGCTTCATGTT-T-CTCA-AGGCAAACATCCAA
* ** * * * *
1204181 TCATGATCTGTTTTAATTAAAAATGAAATAGAATTCAATTTAAACTCA-TTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1204245 CCATTTAAAGTGAGTAACTA-CCTTTCAAAAGAATGAGTGAATATAAATGAACCTTTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** *
1204309 TGGATGTCTTTTATTTCATGTTTCTCAAGGAAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1204350 TTATGATCTGTATTAACC-TAAATGAAAAATAAATTCTATTTAAAATGATTTATAACG-TTATAC
1 TTATGATCTGTTTTAACCAAAAAT-AAAAA-AAATTC-AATTAAAATCATTTATAA-GATTATAA
* * * * * * * * * *
1204413 AACAACTTAAA-CAGATTGACAAGGCTTTTGAAAGTATGAGTGACTACAACTGGACTTTTCTTGT
62 AACCATTTAAAGC-GAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * ** * ** * *
1204477 CAATTGATAGCTTTCACTTTATGTTTCTTGAGCCATACAT-CATA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCA-A
* * * * * * * *
1204521 TTATCATCTATTTTAACTAAAAATGAAAAACAAATTCAGGTTTAAATCATTTATGATATTA-AAG
1 TTATGATCTGTTTTAACCAAAAAT-AAAAA-AAATTCA-ATTAAAATCATTTATAAGATTATAAA
* * * * * * *
1204585 ACCATTTAAATCAAGTAAC-ATGGCTTTCGAAGGTATGAGTGATTACAAATGGACTTTTCTTATA
63 ACCATTTAAAGCGAGTAACTA-GGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
1204649 AATAGATAGCTTTTCCTTCATG-TTCCCAAAGGCAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * *
1204692 TAATGATCTGTTTTAACTAAAAATAAAAAAAAATGAATTTAAAGTCATTCATAA-AGTTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * * ** * * *
1204756 CCACTTAAGATG-G-GTGACGAGGCTTTCAAAGTTATAAGTGAATATAAATAGACTTTTCTTGTC
64 CCATTTAA-A-GCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
*
1204819 AATGGATGGCTTTTGCTTCATGTTTC-CTAAGGCAAACAACCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * *
1204862 TAATGATTTGTTTAAACCAAAAATTAAAAAAAAATCATCTTAAAATCATTTATAA-AGTTACAAA
1 TTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCA-ATTAAAATCATTTATAAGA-TTATAAA
* * ** * * * ** *
1204926 ACTA-CTAACAATGAGTAAC-ATGGCATTCGAAGGCATGAGTGACCATAAACGGGGTTCTCTTGT
63 ACCATTTAA-AGCGAGTAACTA-GGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* ** * * **
1204989 AAATGGATCACTTTCGCTTTATGTTTCTTGAGGCAAACATCCAA
125 CAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1205033 TTATGATTTGTTTTAACCAGAAATGAAAAATAATTCAACTTAAAATTATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * *
1205098 TCATTTAAAGTGCA-TAACTAGGCTTTCGAAGGCATGAATTACTATAAATGGACTTTTTTTATCA
64 CCATTTAAAGCG-AGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** * ** *
1205162 AAGGATAGCTTTCACTTCACGTTTCTCAATACAAACATCAAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
** ** * **
1205204 TTATGATCTAATTTAATAAAAAATGAAAAAACCTCAACTTAAAATCATTTATAA-AGTTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * * * * * ** * * *
1205268 CCA-CTAAAGTGA-TAAGCAAGGCTTTCGAAGGCATAAATGACTATAAATAGAGGTGTCTTATTA
64 CCATTTAAAGCGAGTAA-CTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
1205331 ATGAATGGCTTTCGTTTCATATTTTTCAA-GCTAAATATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGC-AAACATCCAA
* * * * * * *
1205373 TCATGATATGTTTTAACTAAAAATAAAAAGAACTTCAGCTTAAAATAATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAA-AAATTCA-ATTAAAATCATTTATAAGATTATAAAA
** * * ** * *
1205438 TAACTTAAAGTGAGTAACTAGGCTTTCGAAGATATTAGTGACTATAAAAGGACTTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* ** * * * *
1205503 TGGATGGTTTTTGCTTCACATATCCCAAGGAAAACTTCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* ** * * * **
1205544 TTATGATTTCCTTTAACTAAAAATGAAAACAAATTAAACCCAAAGAT-ATTTATAAGATTATAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAA-ATCATTTATAAGATTATAAA
* * * * *
1205608 ACCGTTTAAAGCAAATAATTAGGCTTTCAAAGACATGAGTGACTATAAATGGACTTTTCTTGTCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** * * *
1205673 A-GAGATAGCTTTCG-TTTTTCGTTCCT-AAGCCAAACATCTAA
127 ATG-GATGGCTTTTGCTTCAT-GTTTCTCAAGGCAAACATCCAA
* * * * * * *
1205714 TTATAATTTGTTTTAACTAAAAATGAAACATAATTCAACTTAAACTCA-TTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1205778 CCATTTAAAGTGGGTAACTAAGCTTTCAAAAGTATGAGTGAATATAAATAGACTTTTTTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** **
1205843 TGGATGGCTTTCACTTCATGTTTCTTGAGGCAAACAT-CAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * *
1205883 TTATGATCTGTTTTAACCTAAAATGAAAAAAAATT-AATTTAAAATCATTTATAACATTATAGAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * ** * * * *
1205947 TCACTTAAA-AGACTAAC-ATGAATTTCGAAGACATGAGTGACTATAAATTGACTTTTTTTATCA
64 CCATTTAAAGCGAGTAACTA-GGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
** * *
1206010 ATGGATGGCTTTTATTTCACAT-TTTC-CTAGGCAAACATCTAA
127 ATGGATGGCTTTTGCTT--CATGTTTCTCAAGGCAAACATCCAA
* * * * **
1206052 TTATGATTTGTTTTAA-TAAAATATGAAAAAAAATTTAACTAAAATTTTTTTATGAA-ATTATAA
1 TTATGATCTGTTTTAACCAAAA-AT-AAAAAAAATTCAATTAAAA-TCATTTAT-AAGATTATAA
* * * * * * *
1206115 GACCATTTAAAGCAAGTAACTAGGCCTTTGATGGCATGAGTGATTATAAATAGACTTTTCTTATC
62 AACCATTTAAAGCGAGTAACTAGG-CTTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * ** * *
1206180 AATGAATGGCCTTCGCTTCACATTTTTCAAGGCAAACAACCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1206223 TTATGATCTGTTTCAACCTAAAATGGAGAAAAAA-TCAATTCACAGTCATTTCTAAGGTTATAAA
1 TTATGATCTGTTTTAACCAAAAAT--AAAAAAAATTCAATT-AAAATCATTTATAAGATTATAAA
* ** * * * * * * * * * * *
1206287 ACAATGGAATGCAAGTATCAAAGCTTTCAAAGGCATGAATGGCTATAAATAGATTTTTTTTATCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * ** *
1206352 ATGGATGCCTTTCGCTTCATGTTTTTTGAGGTAAACATCCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * *
1206394 TTATGAACTGTTTTCACCAAAAATTAAAAAAAAATTCAGTCTAAAATTATTTATAAGATTATAAA
1 TTATGATCTGTTTTAACCAAAAA-T-AAAAAAAATTCAAT-TAAAATCATTTATAAGATTATAAA
* * * * * **
1206459 ATCGTATAAAGCAAGTAACTA-GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTAATCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* *
1206523 ATGGATGGCTTTTGCTTCATGTTTCTCAAGAC-AACATTCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * *
1206564 TTATGAT-TTTCTTTAACAAAAAATGAAAAAAAAAACTCAACATAAAATCATTTATAAGATTATA
1 TTATGATCTGT-TTTAACCAAAAAT---AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATA
* * * * * * *
1206628 AAATCATTTAAAGCAAGTAATTAGGCTTTCAAAGGCATAAGCGACAATAAATGTACTTTTCTTGT
61 AAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * *
1206693 CAA-GAGATGGCTTTCAT-TTTACAT-TTTC-CATGGCAAACCTCTAA
125 CAATG-GATGGCTTT--TGCTT-CATGTTTCTCAAGGCAAACATCCAA
* * * *
1206737 TTATGATCTGTTTTAA-TAAAAATAAAATAGAATTCAACTTAAACTCA-TTATGAGATTAT-AAA
1 TTATGATCTGTTTTAACCAAAAATAAAA-AAAATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * ** * * *
1206799 CCATTTAAAGCGAGTAACTAGCCTTTCAAAAGTGTGAGTGAATATAAATGGACCTTTCTTGTGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** * * * *
1206864 TGGATGGCTTTCACTTCATATTTCTCGAGACAAACATCTAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * ** * * * *
1206905 TTATAATCTATTTTAACCTAAAATGGAAAAAATTCTATTTAAAATGATTTATAACATTATACAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTC-AATTAAAATCATTTATAAGATTATAAAAC
* * * * * * * * * *
1206970 AACTTAAA-CAGACTAA-TAAGGCTTTTGAGGGCATGAATGACTAGAAATTGATTTTTTTTGTCA
65 CATTTAAAGC-GAGTAACT-AGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
1207033 ATGGATGGCTTTTCACTTCATGCTTCTTAAGTCAAACACCCAA
127 ATGGATGGCTTTT-GCTTCATGTTTCTCAAGGCAAACATCCAA
* * * ** * * * *
1207076 TTATGATCTATTTGAACTAAAAATGGAAAAAATTCAGCTTGAAATCATTTATCATATTAT-AAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAAC
* * * * * * * *
1207140 CATTTAAATCGAGTAACAAGGCTTTCAAAGGTATGAGTGACTACAAATAGACATTTCTTATCAGT
65 CATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * ** *
1207205 AGATGGCTTTTCCTTCGCG-TTCT-AGAGGCAAACATCCGA
129 GGATGGCTTTTGCTTCATGTTTCTCA-AGGCAAACATCCAA
* * * ** * *
1207244 TAATGATCTGTTTTAACCTAAAATAAAAAAAATTCAGTTTAAGGTCATTCATAA-AGTCATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAAGA-TTATAAAA
* * * * ** *
1207308 CTACTTAAGGCGAGTGA-TGAGGCTTTCAAAGTAATGAGTGAATATAAATGGACTTTTCTTGTCA
64 CCATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* *
1207372 ATGGATGACTTTTGCTTCATGTTTC-CTAAGGCAAACAACCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * *
1207414 TGATGATAC-GTTTTAATCAACAATTAAAAAAAATTC-ATCCTAAAATCATTTATAA-AGTAATA
1 TTATGAT-CTGTTTTAACCAA-AAATAAAAAAAATTCAAT--TAAAATCATTTATAAGA-TTATA
* * * * * * * * *
1207476 AAACTACTAAAAGTGAGTAAC-ATGGCATTCGAAGGCATTAGTAACTAT-AATGGAGTTCTCTTG
61 AAACCATTTAAAGCGAGTAACTA-GGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTG
* ** * * *
1207539 TCAATTGATGGCTTTCCCTTTAGGTTTCTCAAGACAAACATCCAA
124 TCAATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1207584 TTATGATTTGTTTTAACTAAAAATAAAAAATAATTCAACTTAAATTTATTTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAA-AATTCAA-TTAAAATCATTTATAAGATTATAAAA
* * * * * *
1207649 CTATTTAAAGTGGGTAACTACGCTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAA
64 CCATTTAAAGCGAGTAACTAGGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * ** **
1207714 TGGATAGCTTTCGCTTCATGTTTCTTGAGAAAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1207755 TTATAATTTCT-TTTTAACAAAAAATGAAAAAAAAACTCAACCTAAAATTATTTATAAGATTATA
1 TTATGA--TCTGTTTTAACCAAAAAT--AAAAAAAATTCAA-TTAAAATCATTTATAAGATTATA
* * * * *
1207819 AAATCGTTTAAAGCAAGTAATTAGGCTTTCAAAGGCATGAGTAACTATAAATGGACTTTTCTTGT
61 AAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
** * * * *
1207884 CAAAAGATGGCTTTCAT-TTTACAT-TTTC-CAAGGAAAATATCTAA
125 CAATGGATGGCTTT--TGCTT-CATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1207928 TTATGATATGTTTTAACTAAAAATGAAACAAAAGTCAGCTTAAACTCA-TTATGAGATTATAAAA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCA-ATTAAAATCATTTATAAGATTATAAAA
* * * * * * * *
1207992 TCATTTAAAGTGAGTAACTAGCCTTTCAAAAGCATGAGTGAATATAAATGGACCTTTCTTATGAA
64 CCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* **
1208057 TGGATGTCTTTCACTTCATGTTTCTCAAGGCAAACATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * *
1208098 TTATGATCTGTTTTAACCTAAAATGAAAAAAAAATCTATTTAAAATTATTTATAACG-TTATACA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTC-AATTAAAATCATTTATAA-GATTATAAA
** * ** * * * * * *
1208162 AGAACTTAAATAGACTGACAAGGCTTTCGAAGGCATGAGTGATTACAAATGGACTTTTCTTATCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
** ** * **
1208227 ATGGATGGCTTTCACTTCATGTTTCTTGAGCCATTCAT-CATA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCA-A
* * * * * * *
1208269 TTATGGTCTATTTTAACCGAAAATGAAAAAAAAAT-AAGTTTGAAATCATTTATGATATTAT-AA
1 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAA--TTAAAATCATTTATAAGATTATAAA
* * * * * * * * *
1208332 GCCATTTAAATCAAGTAA-TAAGGCTTTCGAAGGCATGAATGATTACAAATAGACTTTTCTTATT
63 ACCATTTAAAGCGAGTAACT-AGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * ** * *
1208396 AGTGGATAGCTTTCCCTTCATGTTT-TAAACGCAAACATCCAA
126 AATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * * *
1208438 TAATGATCTATTTTGA-CATGAAATAAAAAAAATTGAATTTAAAGTCATTCATAA-AGTCATAAA
1 TTATGATCTGTTTTAACCA-AAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAA
* * * ** * ** ** * * * ** *
1208501 ACCACTTAAGGTGAGCGACGAGAATTTCAAAGTAATGACTAAATATAAATGGGTTTTTCTTGCCA
63 ACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * *
1208566 ATGGATGACTTTCGCTTCATGTTCCTTAAGGTAAACCA-CCAA
127 ATGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAA-CATCCAA
* * * * * *
1208608 TAATGATATGTTTTAATCCAAAATTAAAAAAAAATCATCTTAAAATCATTTATAA-AGTTAAAAA
1 TTATGATCTGTTTTAA-CCAAAAATAAAAAAAATTCA-ATTAAAATCATTTATAAGA-TTATAAA
* * * * * * * ** *
1208672 ACCACTAAAAGCGAGTAAC-ATGGCATATGATGGCATAAGTGACTATAAATAGTGTTCTCTTGTC
63 ACCATTTAAAGCGAGTAACTA-GGC-TTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
** * * * *
1208736 AATGGATGGCTTTCACTTCACGTTTCTCGAA-GAAAATATCTAA
126 AATGGATGGCTTTTGCTTCATGTTTCTC-AAGGCAAACATCCAA
* * * * * ** *
1208779 TTATGATTTGTTTTAACCAGAAATGAAAATAATTCAACTTAAAATTATTTATGGGCTTATAAAAC
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGATTATAAAAC
* * * * *
1208844 CATTTAAAGTGCGTAACTAGGCTTTCAAAGGCATGAATGACTATAAATAGACTTTTCTTGTCGAT
65 CATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * ** *
1208909 GGATGGCTTTTGCTTCACGTTTC-CTAGTATAAACATCAAA
129 GGATGGCTTTTGCTTCATGTTTCTCAAG-GCAAACATCCAA
** ** * * *
1208949 TTATGATCTAATTTAATGAAAAATGAAAAGAATTCAATTTAAAATCATTTATAA-AGCTATAAAA
1 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAA-TTAAAATCATTTATAAGA-TTATAAAA
* * * * * * * * * * *
1209013 TCACTAAAAACGAGAAACAAGGTTTTTGAAGGCATAAGTGACTATAAATGGA-GTTTCTTGTCCA
64 CCATTTAAAGCGAGTAACTAGG-CTTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * ** * * *
1209077 TGAATGGCTTTTGTTTCACATTTTTTAAGGCAAGCATCCAA
128 TGGATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
* * * * * * *
1209118 TTATAATCTATTTTAACTAAAAATGAAAAAAAGAACTTCAGCTTAAAATAATTTATGAGATTACA
1 TTATGATCTGTTTTAACCAAAAAT--AAAAAA-AA-TTCA-ATTAAAATCATTTATAAGATTATA
* * * * *
1209183 AAACAACTTAAAGCTAGTAACTAGGCTTTCGAAGGCATGAGTGACTATAAAAGGACTTTTTTTGT
61 AAACCATTTAAAGCGAGTAACTAGGCTTTC-AAGGCATGAGTGACTATAAATGGACTTTTCTTGT
1209248 CAAT
125 CAAT
1209252 TAATAGCTTT
Statistics
Matches: 16390, Mismatches: 4708, Indels: 2521
0.69 0.20 0.11
Matches are distributed among these distances:
144 1 0.00
145 2 0.00
147 4 0.00
148 6 0.00
149 8 0.00
150 10 0.00
151 16 0.00
152 9 0.00
153 7 0.00
154 14 0.00
155 21 0.00
156 12 0.00
157 6 0.00
158 6 0.00
159 12 0.00
160 12 0.00
161 24 0.00
162 20 0.00
163 34 0.00
164 246 0.02
165 52 0.00
166 118 0.01
167 195 0.01
168 1039 0.06
169 2369 0.14
170 5495 0.34
171 3676 0.22
172 1284 0.08
173 518 0.03
174 201 0.01
175 107 0.01
176 100 0.01
177 38 0.00
178 21 0.00
179 21 0.00
180 19 0.00
181 40 0.00
182 86 0.01
183 99 0.01
184 30 0.00
185 45 0.00
186 22 0.00
187 22 0.00
188 16 0.00
189 8 0.00
190 10 0.00
191 6 0.00
192 13 0.00
193 78 0.00
194 17 0.00
195 10 0.00
196 12 0.00
197 7 0.00
198 1 0.00
199 11 0.00
200 22 0.00
201 23 0.00
202 19 0.00
203 13 0.00
204 18 0.00
205 22 0.00
206 12 0.00
207 1 0.00
208 1 0.00
209 1 0.00
210 1 0.00
212 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (168 bp):
TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATTAAAATCATTTATAAGATTATAAAACC
ATTTAAAGCGAGTAACTAGGCTTTCAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
ATGGCTTTTGCTTCATGTTTCTCAAGGCAAACATCCAA
Found at i:1200145 original size:341 final size:339
Alignment explanation
Indices: 1198604--1209251 Score: 4819
Period size: 341 Copynumber: 31.3 Consensus size: 339
1198594 TATTTTATAT
* * *
1198604 TCATTTATAGAGTTATAAAACTACTTAAAG--GGACTAACAAGGCTTTTGAAGGCATGAGTGATT
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAGG--TAACAAGGCTTTTGAAGGCATGAGTGACT
* * * ** ** *
1198667 ATAAATGGA-TTTTTTTGTCAAT--ATATGGCTTTCGCTTCACATTT-CTCAATACAAACATCAA
64 ATAAATGGACTTTTCTTGTCAATGGATA-GCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCA
** *** * * *
1198728 ATTATGATCTAATTTAAGGAAAAATGAAAAAAAATT-AATTTAAAATCATTAAT-AAAGTTATAA
126 ATTATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAA
** * * * * * * * *
1198791 AATTATTTAAAGTGAGTAACAAG-GTTGTCAACGACATAAGTGACTATAAATGGACTTTTCTTGT
189 AACCATTTAAAGTAAGTAACTAGACTTTTGAA-GGCATGAGTGATTATAAATGGACTTTTCTTGT
* * ** ** * * * * *
1198855 AAATGGATGACTTTTGCTTCACATGTCC-CAAGGTAGACATCTAATTATGAT-TTTTTTAA-TGA
253 CAATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAACT-A
** * *
1198917 GAAATGAAACCAATTTCAACTTAAAA
316 -AAAT-AAAAAAAATTCAATTTAAAA
* * * * * * * *
1198943 TCATTTAT-GAGTTTATAAAATCATTTAAAGAAGGTAACTAGGCTTTTGAAGGCAAGAATGATTA
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * *
1199007 TAAATGGACTTTTCTAGTGAATGGA-ATCCTTTCATTTTACA-G-TTCATGAGGCAAACATGCAA
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-A-CTT-CATGTTTCCTAAGGCAAACATCCAA
* * * *
1199069 TTATGATCTGTTTGAA-CTAAAAATGGAAAAAAATTTAACTTAAAATTATTTATGATATTATAAA
127 TTATGATCTGTTTTAACCT-AAAAT-GAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAA
* ** * * * *
1199133 ACTATTTAAAGTGGGCAATTATG-CTTTTGATGGCATGAGTGATTATAAATAGACTTTTCTTG-C
190 ACCATTTAAAGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTC
* * * * * ** * ** * *
1199196 GAATGAAAGGCTGTCATTTTATGTTTTATGATCCAAACATTCAATTATGAT-TTTTTTAACCTAA
254 -AATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAA-CTAA
*
1199260 AACAAAAAAAATTC-ATCTTAAAA
317 AATAAAAAAAATTCAAT-TTAAAA
* * * * *
1199283 TCATTTATAAGGTTATAAAACCACTTAAAG-CGACTAACAAGGCTTTCGAAGACATGAGT-AGCT
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGA-CT
* * * * *
1199346 ATAAATGGACTTATCTAGTCAAGGGAT-GGCTTTAGCTTCATGTTTCCCTAAGGTAAACATCCAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTA-CTTCATGTTT-CCTAAGGCAAACATCCAA
* * * * * * *
1199410 TTATGATCTATTTTAACCTAAAAT-AAAAAAATGCAA-TTGACAATCATTTCTAAGGTTGTAAAA
127 TTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTT-AAAATCATTTATGAGATTATAAAA
* ** ** * * * * * * ** * * * *
1199473 CAACATAAAACAACTAACAAGGCTTTCGAAGGTATTAGTGGCTATAAATAGAATATTCTTGTCTA
191 CCATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAA
** * * * * *
1199538 TGGATGGCTTTTGCTTCATGTTTTCTTAAGTAAATATCCAATT-TGATCTATTTTAACTAAAAAT
256 TGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAAAT
* * ** *
1199602 GATAAAAGAAGTCAACCTCAAA
320 -A-AAAAAAATTCAATTTAAAA
* **** * * * **
1199624 TCATTTAT-AAGATTATCAAATTGTTTAAAAT-GAGTAACTAGGCTCTCAAAGGCATGAGTGACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * *
1199687 ATCAATAGACTTTTCTTGTCAACGGAT-GACTTTCATTTCACGTTT-CTAGAAGCAAACAT-CAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTA-AGGCAAACATCCA-
* * * * * *
1199749 ATTATGATTTGTTTTAA--TAGAAAGTGAAAGAGAATTTAAATGAAACTCATTTATGAGATTATA
126 ATTATGATCTGTTTTAACCTA-AAA-TGAAA-AAAATTCAACTTAAAATCATTTATGAGATTATA
*
1199812 AAACCATTTAAAGTAAGTAACTAGACTTTTGAAAGG-ATGAGTGATTATAAATGGATTTTTCTTG
188 AAACCATTTAAAGTAAGTAACTAGACTTTTG-AAGGCATGAGTGATTATAAATGGACTTTTCTTG
* * *
1199876 TAAATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAATATCCAACTATGATCTATTTTAATCTA
252 TCAATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAA-CTA
* *
1199941 AAATAAAAGAATTTCAATTTAAAA
316 AAATAAAAAAAATTCAATTTAAAA
* *
1199965 TCATTTATAAAGTTATACAACCACTTAAA-TAGGCTAACAAGGCTTTTGAAGGCATGAGTGGCTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAGG-TAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * **
1200029 TAGATGGACTTTTCTTATCAATAGATAGCCATTAATTCATGTTTCCTAAGTTAAACATCCAATTA
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTAAGGCAAACATCCAATTA
* * * * *
1200094 CGATCTTTTTTAACCTAACATCAAAAAAATTTCAACTTAAAATCGTTTATGAGATTATAAAACCA
130 TGATCTGTTTTAACCTAAAATGAAAAAAA-TTCAACTTAAAATCATTTATGAGATTATAAAACCA
* * * *
1200159 TTTAAA--AAGGATAACTAG-CGTTTTAAAGGCATGAGTGATTATAAATAGACTATTCTTGTGAA
194 TTTAAAGTAA-G-TAACTAGAC-TTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAA
* * * * * * * * *
1200221 TGGAAGACTTTCACTTTAAGTTTCAC-AAGGTAAACATCCAATTATGATTTATTTGAACAAAAAA
256 TGGATGGCTTTCACTTCATGTTTC-CTCAGGCAAACATCCAATTATGATCTATTTTAAC-TAAAA
* *
1200285 TGAAAAAAATTCAACTTAAAA
319 TAAAAAAAATTCAATTTAAAA
* * * * * * * * ** *
1200306 TTATTGATGAAGTTGTAAAACCATTTAAAGT-GAGTAACTATGATTTTGATA-GCAAAAGTGATT
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGA-AGGCATGAGTGACT
* * * * * * * *
1200369 ATAAATGGACTCTTCTTATGAATGGA-AGGCTATTGCTTCAAGTTTTAC-AAGGCAAACATTCAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCT-TTACTTCATG-TTTCCTAAGGCAAACATCCAA
* * ** ** * * *
1200432 TTATGTTCTGTTTTAGCAAAAAATGAAAAAAAATTCTTCTTCAAATCATTTATAAAATTATAAAA
127 TTATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAA
* * * * ** * *
1200497 CCACTTAAAGTGACTAACAAGGA-TTTCAAAGACATGAGTGATTATAAATGGACTTTTCTAGTCA
191 CCATTTAAAGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* ** ** ** * * * ** * *
1200561 ATGAATATCTTTTGCTTCACATTTCC-CATTGTATACATTAAATTATAATCTAATTTAACGTAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTCA-GGCAAACATCCAATTATGATCTATTTTAAC-TAAA
*
1200625 ACT-AAAAAAATTTAATTTAAAA
318 A-TAAAAAAAATTCAATTTAAAA
* * * * * * * *
1200647 TCATTTATAAAGTTTTAAAATCACTTAAAGTGAGG-AATAAAGTTTTTGAAGGAATAAATGACTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGT-AGGTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * * ** * * **
1200711 TAAATAGACTTCTCTTATCAATGGATGGCTTTTGCTTTACATTT-CTCAATGTAAACATTAAATT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCT-AAGGCAAACATCCAATT
* ** *** * * *
1200775 ATAATCTAATTTAAGGAAAAATGAAAACAAATTCAATTTAAAATCATTAAT-AAAGTTATAAAAC
129 ATGATCTGTTTTAACCTAAAATGAAAA-AAATTCAACTTAAAATCATTTATGAGA-TTATAAAAC
** * * * * * * *
1200839 CA-CAATAAGTGAGTAACAAGA-TTTTCAATGACATGAGTGACTATAAATGGACTTTTCTTATAA
192 CATTTA-AAGTAAGTAACTAGACTTTTGAA-GGCATGAGTGATTATAAATGGACTTTTCTTGTCA
** *
1200902 ATGGATGGCTTTTGCTTCATGTTTCC-CAAGGCAAACATCCAATTATGATCTTTTTTAA-TGAGA
255 ATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAACT-A-A
* * *
1200965 AATGAAAAAAATTTTAAATTAAAA
317 AAT-AAAAAAAATTCAATTTAAAA
* * * ** * * * * * * *
1200989 TCATTAAT-GAGACTATAAAATGA-TTGAAGCCA-GTAACTAGGCTTTTGAAGGTAAGGGTGATT
1 TCATTTATAAAG-TTATAAAACCACTTAAAG-TAGGTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * * * * *
1201051 ATAAATAGATTTTTCTTGTGAATTGAAAG-CTTTCACTTTACGTTTCATGAGGTAAACATCCAAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * ** * *
1201115 TATGATCTGTTTGAACCAAAAAT-AAAAAAA-AAAACTTAAAATTATTTATGATATTATAAAACC
128 TATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACC
* * * ** * *
1201178 ATTTAAAGCT-AGTAACCATACTTTCGATA-GCATGAGCAATTATAAATAGATTTTTCTCT-TCA
193 ATTTAAAG-TAAGTAACTAGACTTTTGA-AGGCATGAGTGATTATAAATGGACTTTTCT-TGTCA
* * * * * *
1201240 ATGGAAGGTTTTCACTTCATGTTT--TACAAGCCAAACATTCAATTATGATTTGTTTTAATCTAA
255 ATGGATGGCTTTCACTTCATGTTTCCT-C-AGGCAAACATCCAATTATGATCTATTTTAA-CTAA
* *
1201303 AACAAAAACAA-TC-ATCTTAAAA
317 AATAAAAAAAATTCAAT-TTAAAA
* * * *
1201325 TCATTTATAACGTTATAAAACCACTTAAAGT-GACTAACAAGGCTTTCGAAGGCATGAATGACTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * *
1201389 TAAATGGACTTCTCTTGTCAAGGGAT-GGCTTTCACTTCATGTTTCCCT-ATGCAAACATCCAAT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTT-CCTAAGGCAAACATCCAAT
* * * ** * * *
1201452 TATGATCTTTTTTAACTTAAAATGAAAAAAAAATGTAGTTGACAATCATTTAT-ATGGTTATAAA
128 TATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAACTT-AAAATCATTTATGA-GATTATAAA
* ** * * * * ** * *
1201516 ACAACATAAA-TCAAGAAACAAGGCTTTTGAAGGCATTAGTGGCTATAAATGAAATTTTCTTGTC
190 ACCATTTAAAGT-AAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTC
* * * * * * * * * *
1201580 AATGGATGGCTCTT-GCTACATGTCTACTGAGGAAAACATCCAATTCTTATATGTTTTAACTAAA
254 AATGGATGGCT-TTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AA
* * **
1201644 AATTTAAGAAAAAGTCAACCTAAAA
317 AA--TAAAAAAAATTCAATTTAAAA
* * * * ** ** * *
1201669 TCATCTAT-AAGATTAAAAAACTATTTAAAGT-GAGTAATTAGGCTTTCAAATGCATGGGTGACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * *
1201732 ATCAATAGACTTTTCTTGTCAAGGGAT-GGCTTTCATTTTTCA--TTT-CTCAAGGAAAACATCT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-A--CTTCATGTTTCCT-AAGGCAAACATCC
* ** * * *
1201793 TATTATGATCTGTTTTAATATAAAATAAAAAAAATTCAACTTAAACTC-TTTAATGAGATTATAT
125 AATTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTT-ATGAGATTATAA
* ** * * *
1201857 AACCATTTAAAGTTAA-TAACTAGGCTTTCAAAAAG-ATGAGTGTTTATAAATAGACTTTTCTTG
189 AACCATTTAAAG-TAAGTAACTAGACTTT-TGAAGGCATGAGTGATTATAAATGGACTTTTCTTG
* * * * * ** *
1201920 TTAATGGATGGCTTTCACTTCATGTTTTCTAAGGCAAACATCCAATTATGGTATGCTTTAATTTA
252 TCAATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAA-CTA
* *
1201985 AAATGAAAACAATTCAATTTAAAA
316 AAATAAAAAAAATTCAATTTAAAA
* * * * *
1202009 TTATTTATAAAG-TAGTACAAGCACTTAAA-TAGATTTATC-AGGCTTTT-AAGGGCATGAGTGA
1 TCATTTATAAAGTTA-TAAAACCACTTAAAGTAG--GTAACAAGGCTTTTGAA-GGCATGAGTGA
* * * ** * * *
1202070 CTATAGATGGACTTTTCTTTTC-ATGGATGGGTTTTGCTTCATGCTT-CTCAA-GTAAAGCATCC
62 CTATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCT-AAGGCAAA-CATCC
* * * *
1202132 AATTATGATATTTTTTAACCTAAAATGAGAAAAATTCAACTTAAAATCATTTATAAGATTACT-A
125 AATTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGATTA-TAA
* * * * **
1202196 AACCGTTTAAAG-AGGGTAACAAGCCTTTTGAAGGCATGAGTGATTATAAATGGACTACTCTTGT
189 AACCATTTAAAGTA-AGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGT
* * ** *** * * * *
1202260 GAATGGAAGGCTTTCACTTCAACTTTCAAGAGGCAAATATCTAATTATGATCTGTTTTAACAAAA
253 CAATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAAC-TAA
* * **
1202325 AATGAAAAAAATTCAAATTAGGA
317 AATAAAAAAAATTCAATTTAAAA
* * * * * * * * *
1202348 TTATTGATGAAGTTGTAAAACCATTTAATGCAGGTAACTAGGCTTTTGATGGCATGAGTGA-TAA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACT-A
* * * * * * **
1202412 TAAATGGA-TGTTTCTTGTGAATGGA-AGACTTTCGCTTCATGTTTCATGAGGCAGACATTTAAT
65 TAAATGGACT-TTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * ** * *
1202475 TATGATATGTTTTAGCATAAACA--AAAAAAA-TCTTCTTAAAATTATTCCTA-AAG-TTATAAA
128 TATGATCTGTTTTAACCTAAA-ATGAAAAAAATTCAACTTAAAATCATT--TATGAGATTATAAA
* * * * * *
1202535 ACCAATTAAA-TCGACTAAC-AAAGCTTTTGAAGGCATGAGTGACTATAAATGGAC-TCTCTTTG
190 ACCATTTAAAGT-AAGTAACTAGA-CTTTTGAAGGCATGAGTGATTATAAATGGACTTTTC-TTG
* * * ** * *** * * * *
1202597 TCAATAGATGCCTTTCGCTTCATAATGCC-CAATTTAGACATCAAATTATGATCTAATTTAATGT
252 TCAATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAA-CT
* * * * *
1202661 GAAATTAGAAAATTTTAATTTAAAA
315 AAAATAAAAAAAATTCAATTTAAAA
* * * * * * *
1202686 TCATTTATAAAGTTTTAAAACCACTTAAAGCAAGTAATAAGG-TTTTCGATGGCATGCGTGACTG
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAGGTAACAAGGCTTTT-GAAGGCATGAGTGACTA
* * * * *
1202750 TAAATAGATTTTTTTTGTCAATGGAT-GGCTTTCACTTCATGTTT-CTCAAGGCAAACATCAAAT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCAAT
* * * *
1202813 TATGATATGTTTTAACC-AAAACT-AAAAGATATTCAACTTGAAGTCATTTATGAGATTAT-AAA
128 TATGATCTGTTTTAACCTAAAA-TGAAAA-AAATTCAACTTAAAATCATTTATGAGATTATAAAA
* * * * * * * * *
1202875 CCATTTAAAGTGAGTAA-TTGAGCTTTCGAAGGTATTAATGACTATAAATGGACTTTTCCTATCA
191 CCATTTAAAGTAAGTAACTAGA-CTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* * * * * *
1202939 AGGGATGGCTTTCATTTCATGTTT-CTCAAGCCAAACATCTAATTATGATATGA-TTTAATCAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCT-ATTTTAA-CTAA
* * * *
1203002 AATTAAAAATAGTTCAACTTAAAG
317 AA-TAAAAAAAATTCAATTTAAAA
* * * * * * *
1203026 TCATTTAT-GAGATTATAAAAACATTTAAAGTTA-GTAACTAGGCTTTCGAACGCATGAGTGAAT
1 TCATTTATAAAG-TTATAAAACCACTTAAAG-TAGGTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * *
1203089 ATAAATAGACTTTTCTTGTAAATGGATAG-CTTTCACTTCATGTTT-CTCGAGACAAACATCAAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * * * *
1203152 TTATCATCTATTTTAACTTAAAATGAAAAAAAATCAATTTAAAGTCATTTAT-AGTGTTATACAA
127 TTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAG-ATTATAAAA
* * * * * * * * *
1203216 CAACTTAAA-TCGACTAACTAGGCTTTTGAAGGTATGAGTGACTATATATGGACTTTTTTTGTCA
191 CCATTTAAAGT-AAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* ** * *
1203280 ATGGATGGCTTTCACTTCATGTTTCTTGGGGTATACATCCAATTATGATCTATTTTAACTAAAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAAA
* **
1203345 TAAAAAAAAATTTAGCTTAAAA
319 T-AAAAAAAATTCAATTTAAAA
* * * * * ** * *
1203367 TCATTTAT-GAGATTAT-AAATCA-TATAAA-TCGAGTAACGAGGCATTCAAAAGCATGAGTGAT
1 TCATTTATAAAG-TTATAAAACCACT-TAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGAC
* * * * *** * *
1203428 TATAAATGGAGTTTTCTTATCAATGGAT-GACTTTTCCTTCA-CAATCTCTAAGGTAAACATTCA
63 TATAAATGGACTTTTCTTGTCAATGGATAG-CCTTTACTTCATGTTTC-CTAAGGCAAACATCCA
* * * * * * * * *
1203491 ATAATGATATGTTTTAACCTAAAATGAAAAAAAAATCAATTTAAAGTCATTCATAAG-TTGTAGA
126 ATTATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAA
* ** * * * * * * * ** *
1203555 ACCACTTATGGCAAGTAACGAGGCTTTTCAAGTCATAAGTAAAGATAAATAGACTTTTCTTGTCA
190 ACCATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
** * * * * * *
1203620 ATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACAACCAATAATGATATGTCTTAACTGAAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAAA
1203685 TTAAAAAAAAATTC-ATCTTAAAA
319 -T-AAAAAAAATTCAAT-TTAAAA
* * * * * *
1203708 TCATTTATAAAGTTATAAAACCACTAAAAGT-GAGTAACATGGCGTTCGAAGGCATGGGTGATTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * *
1203772 TAAATGGAGTTCTCTT-TCCAATGGATGGCTTTTGCTTCATGTTT-CTCAACGTAAACATCCAAT
65 TAAATGGACTTTTCTTGT-CAATGGATAGCCTTTACTTCATGTTTCCT-AAGGCAAACATCCAAT
* * * * *
1203835 TATGGTCTGTTTTAACC-AGAAATAAAAAATAATTCAACTCAAAATTATTTATGAGGTTATAAAA
128 TATGATCTGTTTTAACCTA-AAATGAAAAA-AATTCAACTTAAAATCATTTATGAGATTATAAAA
* * * * * ** ** * *
1203899 TCATGTCAAGTGAGTAACTAGGA-TTTCGAAGGCATGAACGGCTATAAATAGACTTTCACTTGTC
191 CCATTTAAAGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTT-TCTTGTC
* * * * * *
1203963 AATGGATGGCTTTCACTTCACGTTT-CTCAAGGCAAACATCCAATTATTATTTACTTTCACCAAA
254 AATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTA-TTTTAACTAA
* **
1204027 AATTTTAAAAAAAAACCTCAACCTAAAA
317 AA---T-AAAAAAAA-TTCAATTTAAAA
* * * **
1204055 TCATTTAT-AAGATTATAAAACCAGTTAAAGCAAGTAATTAGGCTTTTGAAGGCATGAGTGACTA
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACTA
** * * * ** * * ** ** *
1204119 TAAATGGACTTTTCTTGAAAAAGGATGGCTTTTGTTTTAT-TTATCCTGATACAAACATTTAATC
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTT-TCCTAAGGCAAACATCCAATT
* * * *
1204183 ATGATCTGTTTTAA-TTAAAAATGAAATAGAATTCAATTTAAACTCA-TTATGAGATTATAAAAC
129 ATGATCTGTTTTAACCT-AAAATGAAA-AAAATTCAACTTAAAATCATTTATGAGATTATAAAAC
* * ** * * * * * *
1204246 CATTTAAAGTGAGTAACTA-CCTTTCAAAAGAATGAGTGAATATAAATGAACCTTTCTTGTGAAT
192 CATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAAT
* * * * * *
1204310 GGATGTCTTTTATTTCATGTTT-CTCAAGGAAAACATCCAATTATGATCTGTATTAACCT-AAAT
257 GGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAA-CTAAAAT
*
1204373 GAAAAATAAATTCTATTTAAAA
320 -AAAAA-AAATTCAATTTAAAA
* * * * * * * * *
1204395 TGATTTATAACGTTATACAACAACTTAAA-CAGATTGACAAGGCTTTTGAAAGTATGAGTGACTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * * *
1204459 CAACTGGACTTTTCTTGTCAATTGATAG-CTTTCACTTTATGTTTCTTGAGCCATACAT-CATAT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTAAGGCAAACATCCA-AT
* * ** * * *
1204522 TATCATCTATTTTAA-CTAAAAATGAAAAACAAATTCAGGTTTAAATCATTTATGATATTA-AAG
128 TATGATCTGTTTTAACCT-AAAATG-AAAA-AAATTCAACTTAAAATCATTTATGAGATTATAAA
* * * * *
1204585 ACCATTTAAA-TCAAGTAAC-ATGGCTTTCGAAGGTATGAGTGATTACAAATGGACTTTTCTTAT
190 ACCATTTAAAGT-AAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGT
* * * * ** * *
1204648 AAATAGATAGCTTTTC-CTTCATGTTCCCAAAGGCAAACATCCAATAATGATCTGTTTTAACTAA
253 CAATGGATGGC-TTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-A
* * *
1204712 AAATAAAAAAAAATGAATTTAAAG
316 AAATAAAAAAAATTCAATTTAAAA
* * * * ** ** * *
1204736 TCATTCATAAAGTTATAAAACCACTT-AAGATGGGTGACGAGGCTTTCAAAGTTATAAGTGAATA
1 TCATTTATAAAGTTATAAAACCACTTAAAG-TAGGTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * *
1204800 TAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACAACCAATAA
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTAAGGCAAACATCCAATTA
* * * * * * * * *
1204865 TGATTTGTTTAAACCAAAAATTAAAAAAAAATCATCTTAAAATCATTTAT-AAAGTTACAAAACT
130 TGATCTGTTTTAACCTAAAA-TGAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAACC
* * * * * * ** * ** * *
1204929 A-CTAACAATGAGTAAC-ATGGCATTCGAAGGCATGAGTGACCATAAACGGGGTTCTCTTGTAAA
193 ATTTAA-AGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAA
** * * * * * * *
1204992 TGGATCACTTTCGCTTTATGTTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCAGAAAT
256 TGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACTA-AAAT
* *
1205057 GAAAAATAATTCAACTTAAAA
320 -AAAAAAAATTCAATTTAAAA
* * * * * * * * *
1205078 TTATTTAT-GAGATTATAAAATCATTTAAAGT-GCATAACTAGGCTTTCGAAGGCATGAATTACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * ** *
1205141 ATAAATGGACTTTTTTTATCAAAGGATAG-CTTTCACTTCACGTTT-CTCAATACAAACATCAAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCAA
** *** ** *
1205204 TTATGATCTAATTTAATAAAAAATGAAAAAACCTCAACTTAAAATCATTTAT-AAAGTTATAAAA
127 TTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAA
* * * * * * * * * ** * * *
1205268 CCA-CTAAAGTGA-TAAGCAAGGCTTTCGAAGGCATAAATGACTATAAATAGAGGTGTCTTATTA
191 CCATTTAAAGTAAGTAA-CTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* ** * * * * * * *
1205331 ATGAATGGCTTTCGTTTCATATTT-TTCAAGCTAAATATCCAATCATGATATGTTTTAACTAAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTCAGGC-AAACATCCAATTATGATCTATTTTAACT-AAA
* **
1205395 ATAAAAAGAACTTCAGCTTAAAA
318 ATAAAAA-AAATTCAATTTAAAA
* * ** * * ** *
1205418 TAATTTAT-GAGATTATAAAATAACTTAAAGT-GAGTAACTAGGCTTTCGAAGATATTAGTGACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * ** * ** * * * *
1205481 ATAAAAGGACTTTTCTTGTCAATGGATGGTTTTTGCTTCACATATCCCAAGGAAAACTTCCAATT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTAAGGCAAACATCCAATT
* ** * ** *
1205546 ATGATTTCCTTTAA-CTAAAAATGAAAACAAATTAAACCCAAAGAT-ATTTATAAGATTATAAAA
129 ATGATCTGTTTTAACCT-AAAATGAAAA-AAATTCAACTTAAA-ATCATTTATGAGATTATAAAA
* * * * * ** * *
1205609 CCGTTTAAAGCAAATAATTAGGCTTTCAAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAA
191 CCATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAA
* * ** * * * * * *
1205674 -GAGATAGCTTTC-GTTTTTCG-TTCCTAAGCCAAACATCTAATTATAATTTGTTTTAACTAAAA
256 TG-GATGGCTTTCACTTCAT-GTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAA
* * * *
1205736 ATGAAACATAATTCAACTTAAAC
318 AT-AAAAAAAATTCAATTTAAAA
* * * ** * * *
1205759 TCA-TTAT-GAGATTATAAAACCATTTAAAGTGGGTAACTAA-GCTTTCAAAAGTATGAGTGAAT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAGGTAAC-AAGGCTTTTGAAGGCATGAGTGACT
* * * * *
1205821 ATAAATAGACTTTTTTTGTCAATGGAT-GGCTTTCACTTCATGTTTCTTGAGGCAAACAT-CAAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * *
1205884 TATGATCTGTTTTAACCTAAAATGAAAAAAAATT-AATTTAAAATCATTTATAACATTATAGAAT
128 TATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAAC
* * * * * * * * *
1205948 CACTTAAA--AGACTAAC-ATGAATTTCGAAGACATGAGTGACTATAAATTGACTTTTTTTATCA
192 CATTTAAAGTA-AGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* * * * *
1206010 ATGGATGGCTTTTATTTCACAT-TTTCCT-AGGCAAACATCTAATTATGATTTGTTTTAA-TAAA
255 ATGGATGGCTTTCACTT--CATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AA
* *
1206072 ATATGAAAAAAAATTTAA-CTAAAA
317 A-AT-AAAAAAAATTCAATTTAAAA
** * * * * * * * *
1206096 TTTTTTTATGAAA-TTATAAGACCATTTAAAGCAAGTAACTAGGCCTTTGATGGCATGAGTGATT
1 -TCATTTAT-AAAGTTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * ** * *
1206160 ATAAATAGACTTTTCTTATCAATGAATGGCCTTCGCTTCACAT-TTTTC-AAGGCAAACAACCAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTT--CATGTTTCCTAAGGCAAACATCCAA
* * * * * *
1206223 TTATGATCTGTTTCAACCTAAAATGGAGAAAAAA-TCAA-TTCACAGTCATTTCTAAGGTTATAA
127 TTATGATCTGTTTTAACCTAAAAT-GA-AAAAAATTCAACTT-AAAATCATTTATGAGATTATAA
* ** * * * * ** * ** * * * *
1206286 AACAATGGAATGCAAGTATC-AAAGCTTTCAAAGGCATGAATGGCTATAAATAGATTTTTTTTAT
189 AACCATTTAAAGTAAGTAACTAGA-CTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGT
* * ** * * * * * *
1206350 CAATGGATGCCTTTCGCTTCATGTTTTTTGAGGTAAACATCCAATTATGAACTGTTTTCACCAAA
253 CAATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTT-AACTAA
* *
1206415 AATTAAAAAAAAATTCAGTCTAAAA
317 AA-T-AAAAAAAATTCAATTTAAAA
* * * * * * *
1206440 TTATTTAT-AAGATTATAAAATC-GTATAAAGCAAGTAACTA-GCTTTCGAAGGCATGAGTGACT
1 TCATTTATAAAG-TTATAAAACCACT-TAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACT
* ** * * * * *
1206502 ATAAATAGACTTTTCTAATCAATGGATGGCTTTTGCTTCATGTTT-CTCAAGAC-AACATTCAAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCT-AAGGCAAACATCCAAT
* ** * * *
1206565 TATGAT-TTTCTTTAACAAAAAATGAAAAAAAAAACTCAACATAAAATCATTTATAAGATTATAA
128 TATGATCTGT-TTTAACCTAAAATG---AAAAAAATTCAACTTAAAATCATTTATGAGATTATAA
* * * * ** * * ** *
1206629 AATCATTTAAAGCAAGTAATTAGGCTTTCAAAGGCATAAGCGACAATAAATGTACTTTTCTTGTC
189 AACCATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTC
* * * *
1206694 AA-GAGATGGCTTTCATTTTACAT-TTT-C-CATGGCAAACCTCTAATTATGATCTGTTTTAA-T
254 AATG-GATGGCTTTCA-CTT-CATGTTTCCTCA-GGCAAACATCCAATTATGATCTATTTTAACT
* * *
1206754 AAAAATAAAATAGAATTCAACTTAAAC
315 -AAAATAAAA-AAAATTCAATTTAAAA
* * * * * ** * ** *
1206781 TCA-TTAT-GAGATTAT-AAACCATTTAAAG-CGAGTAACTAGCCTTTCAAAAGTGTGAGTGAAT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * *
1206842 ATAAATGGACCTTTCTTGTGAATGGAT-GGCTTTCACTTCATATTT-CTCGAGACAAACATCTAA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * * * * *
1206905 TTATAATCTATTTTAACCTAAAATGGAAAAAATTCTATTTAAAATGATTTATAACATTATACAAC
127 TTATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAAC
* * * * * * * * * * * *
1206970 AACTTAAA-CAGACTAA-TAAGGCTTTTGAGGGCATGAATGACTAGAAATTGATTTTTTTTGTCA
192 CATTTAAAGTA-AGTAACT-AGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* * * * * *
1207033 ATGGATGGCTTTTCACTTCATGCTTCTTAAGTCAAACACCCAATTATGATCTATTTGAACTAAAA
255 ATGGATGGC-TTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAA
** ** *
1207098 ATGGAAAAAATTCAGCTTGAAA
318 ATAAAAAAAATTCAATTTAAAA
* * * ** *
1207120 TCATTTATCATA-TTAT-AAACCATTTAAA-TCGAGTAACAAGGCTTTCAAAGGTATGAGTGACT
1 TCATTTAT-AAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * * * * ** *
1207182 ACAAATAGACATTTCTTATCAGTAGATGGCTTTTCCTTCGCG-TT-CTAGAGGCAAACATCCGAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTA-AGGCAAACATCCAAT
* * ** ** * * *
1207245 AATGATCTGTTTTAACCTAAAATAAAAAAAATTCAGTTTAAGGTCATTCAT-AAAGTCATAAAAC
128 TATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAAC
* * * ** * * ** ** *
1207309 TACTTAAGGCGAGTGA-TGAGGCTTTCAAAGTAATGAGTGAATATAAATGGACTTTTCTTGTCAA
192 CATTTAAAGTAAGTAACT-AGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAA
* ** * * * *
1207373 TGGATGACTTTTGCTTCATGTTTCCTAAGGCAAACAACCAATGATGATAC-GTTTTAA-TCAACA
256 TGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGAT-CTATTTTAACT-AA-A
*
1207436 ATTAAAAAAAATTC-ATCCTAAAA
318 A-TAAAAAAAATTCAAT-TTAAAA
* * * * * * * *
1207459 TCATTTATAAAGTAATAAAACTACTAAAAGT-GAGTAACATGGCATTCGAAGGCATTAGTAACTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * * *
1207523 T-AATGGAGTTCTCTTGTCAATTGAT-GGCTTTCCCTTTAGGTTT-CTCAAGACAAACATCCAAT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCT-AAGGCAAACATCCAAT
* * * *
1207585 TATGATTTGTTTTAA-CTAAAAATAAAAAATAATTCAACTTAAATTTATTTATGAGATTATAAAA
128 TATGATCTGTTTTAACCT-AAAATGAAAAA-AATTCAACTTAAAATCATTTATGAGATTATAAAA
* ** * *
1207649 CTATTTAAAGTGGGTAACTACG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCA
191 CCATTTAAAGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* * * * ** * *
1207713 ATGGATAGCTTTCGCTTCATGTTTCTTGAGAAAAACATCCAATTATAATTTCT-TTTTAACAAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGA--TCTATTTTAAC-TAA
* **
1207777 AATGAAAAAAAAACTCAACCTAAAA
317 AAT--AAAAAAAATTCAATTTAAAA
* * ** * * ** ** *
1207802 TTATTTAT-AAGATTATAAAATCGTTTAAAGCAAGTAATTAGGCTTTCAAAGGCATGAGTAACTA
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACTA
** * * * * *
1207866 TAAATGGACTTTTCTTGTCAAAAGAT-GGCTTTCATTTTACAT-TTTCC-AAGGAAAATATCTAA
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-A-CTT-CATGTTTCCTAAGGCAAACATCCAA
* * * *
1207928 TTATGATATGTTTTAA-CTAAAAATGAAACAAAAGTCAGCTTAAACTCA-TTATGAGATTATAAA
127 TTATGATCTGTTTTAACCT-AAAATGAAA-AAAATTCAACTTAAAATCATTTATGAGATTATAAA
* * * ** * * * * *
1207991 ATCATTTAAAGTGAGTAACTAGCCTTTCAAAAGCATGAGTGAATATAAATGGACCTTTCTTATGA
190 ACCATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCA
* *
1208056 ATGGATGTCTTTCACTTCATGTTT-CTCAAGGCAAACATCCAATTATGATCTGTTTTAACCTAAA
255 ATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAA-CTAAA
* *
1208120 ATGAAAAAAAAATCTATTTAAAA
318 AT-AAAAAAAATTCAATTTAAAA
* * * ** * * * *
1208143 TTATTTATAACGTTATACAAGAACTTAAA-TAGACTGACAAGGCTTTCGAAGGCATGAGTGATTA
1 TCATTTATAAAGTTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACTA
* * * * * * **
1208207 CAAATGGACTTTTCTTATCAATGGAT-GGCTTTCACTTCATGTTTCTTGAGCCATTCAT-CATAT
65 TAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCCTAAGGCAAACATCCA-AT
* * * * * * * *
1208270 TATGGTCTATTTTAACCGAAAATGAAAAAAAAAT-AAGTTTGAAATCATTTATGATATTAT-AAG
128 TATGATCTGTTTTAACCTAAAATG-AAAAAAATTCAA-CTTAAAATCATTTATGAGATTATAAAA
* * * * * * *
1208333 CCATTTAAA-TCAAGTAA-TAAGGCTTTCGAAGGCATGAATGATTACAAATAGACTTTTCTTATT
191 CCATTTAAAGT-AAGTAACT-AGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTC
* * * * * * * *
1208396 AGTGGATAGCTTTCCCTTCATGTTT--TAAACGCAAACATCCAATAATGATCTATTTTGACATGA
254 AATGGATGGCTTTCACTTCATGTTTCCT-CAGGCAAACATCCAATTATGATCTATTTTAAC-TAA
* *
1208459 AATAAAAAAAATTGAATTTAAAG
317 AATAAAAAAAATTCAATTTAAAA
* * * * ** ** ** * * *
1208482 TCATTCATAAAGTCATAAAACCACTTAAGGTGAGCG--ACGAGAATTTCAAAGTAATGACTAAAT
1 TCATTTATAAAGTTATAAAACCACTTAAAGT-AG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
** * * * *
1208545 ATAAATGGGTTTTTCTTGCCAATGGAT-GACTTTCGCTTCATG-TTCCTTAAGGTAAACCA-CCA
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTT-ACTTCATGTTTCC-TAAGGCAAA-CATCCA
* * * * * * *
1208607 ATAATGATATGTTTTAATCC-AAAATTAAAAAAAAATCATCTTAAAATCATTTAT-AAAGTTAAA
126 ATTATGATCTGTTTTAA-CCTAAAA-TGAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATA
* * ** * * * * * * * ** *
1208670 AAACCACTAAAAGCGAGTAAC-ATGGCATATGATGGCATAAGTGACTATAAATAGTGTTCTCTTG
188 AAACCATTTAAAGTAAGTAACTA-GACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTG
* * * * * * * *
1208734 TCAATGGATGGCTTTCACTTCACGTTT-CTCGAAGAAAATATCTAATTATGATTTGTTTTAACCA
252 TCAATGGATGGCTTTCACTTCATGTTTCCTC-AGGCAAACATCCAATTATGATCTATTTTAACTA
* * *
1208798 GAAATGAAAATAATTCAACTTAAAA
316 -AAATAAAAAAAATTCAATTTAAAA
* ** * * ** *
1208823 TTATTTAT-GGGCTTATAAAACCATTTAAAGT-GCGTAACTAGGCTTTCAAAGGCATGAATGACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAGTAG-GTAACAAGGCTTTTGAAGGCATGAGTGACT
* * * * * * ** *
1208886 ATAAATAGACTTTTCTTGTCGATGGATGGCTTTTGCTTCACGTTTCCT-AGTATAAACATCAAAT
64 ATAAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTAAG-GCAAACATCCAAT
** *** * * * * *
1208950 TATGATCTAATTTAATGAAAAATGAAAAGAATTCAATTTAAAATCATTTAT-AAAGCTATAAAAT
128 TATGATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAAC
* * *** * * ** * * * *
1209014 CACTAAAAACGAGAAACAAGGTTTTTGAAGGCATAAGTGACTATAAATGGA-GTTTCTTGTCCAT
192 CATTTAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAAT
* *** ** ** * * *
1209078 GAATGGCTTTTGTTTCACATTTTTTAAGGCAAGCATCCAATTATAATCTATTTTAACTAAAAATG
257 GGATGGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACT-AAAAT-
**
1209143 AAAAAAAGAACTTCAGCTTAAAA
320 -AAAAAA-AA-TTCAATTTAAAA
* * * * * *
1209166 TAATTTAT-GAGATTACAAAACAACTTAAAGCTA-GTAACTAGGCTTTCGAAGGCATGAGTGACT
1 TCATTTATAAAG-TTATAAAACCACTTAAAG-TAGGTAACAAGGCTTTTGAAGGCATGAGTGACT
* *
1209229 ATAAAAGGACTTTTTTTGTCAAT
64 ATAAATGGACTTTTCTTGTCAAT
1209252 TAATAGCTTT
Statistics
Matches: 7865, Mismatches: 1987, Indels: 910
0.73 0.18 0.08
Matches are distributed among these distances:
335 1 0.00
336 26 0.00
337 189 0.02
338 590 0.08
339 1123 0.14
340 1652 0.21
341 2316 0.29
342 900 0.11
343 521 0.07
344 319 0.04
345 38 0.00
346 54 0.01
347 131 0.02
348 5 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (339 bp):
TCATTTATAAAGTTATAAAACCACTTAAAGTAGGTAACAAGGCTTTTGAAGGCATGAGTGACTAT
AAATGGACTTTTCTTGTCAATGGATAGCCTTTACTTCATGTTTCCTAAGGCAAACATCCAATTAT
GATCTGTTTTAACCTAAAATGAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATT
TAAAGTAAGTAACTAGACTTTTGAAGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGAT
GGCTTTCACTTCATGTTTCCTCAGGCAAACATCCAATTATGATCTATTTTAACTAAAATAAAAAA
AATTCAATTTAAAA
Found at i:1204754 original size:511 final size:508
Alignment explanation
Indices: 1198608--1214761 Score: 5353
Period size: 511 Copynumber: 31.5 Consensus size: 508
1198598 TTATATTCAT
* * * * * * ** * * *
1198608 TTATAGAGTTATAAAACTACTTAAAGGGACTAACAAGGCTTTTGAAGGCATGAGTGATTATAAAT
1 TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAAT
* * ** ** ** *
1198673 GGA-TTTTTTTGTCAATATATGGCTTTCGCTTCACATTTCTCAATACAAACATCAAATTATGATC
66 AGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGATC
** *** * * * ** *
1198737 TAATTTAAGGAAAAATGAAAAAAAATTAATTTAAAATCATTAATAAAGTTATAAAATTATTTAAA
131 TGTTTTAACCTAAAATGAAAAAAAATTCATTTAAAATCATTTATAACGTTATAAAACAACTTAAA
** * * * *
1198802 GTGAGTAACAAGG-TTGTC-AACGACATAAGTGACTATAAATGGACTTTTCTTGTAAATGGATGA
196 CAGAGTAACAAGGCTT-TCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
** ** * ** * * * **
1198865 CTTTTGCTTCACATGTCCCAAGGTAGACATCTAATTATGATTT-TTTTAA-TGAGAAATGAAACC
259 CTTTCACTTCATGTTTCTTAAGGCAAACATC-AATTATGATTTATTTTAACT-AAAAATGAAAAA
* * * **
1198928 AATTTCAACTTAAAATCATTTATGAGTTTATAAAATCATTTAAAG-AAGGTAACTAGGCTTTTGA
322 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAA-GTAACTAGGCTTTCAA
* * * * * * *
1198992 AGGCAAGAATGATTATAAATGGACTTTTC-TAGTGAATGGA-ATCCTTTCATTTTACA-GTT-CA
386 AGGCATGAGTGACTATAAATGGACTTTTCTTA-TCAATAGATA-GCTTTCA-CTT-CATGTTCCA
* * * * * * * *
1199053 TGAGGCAAACATGCAATTATGATCTGTTTGAACTAAAAATGGAAAAAAATTTAACTTAAAATTA
447 -AAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTAAACTCA
* * * * * * ** ** * *
1199117 TTTATGATA-TTATAAAACTATTTAAAGTGGGCAATTATGCTTTTGATGGCATGAGTGATTATAA
1 -TTAT-AAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * * ** * ** *
1199181 ATAGACTTTTCTTG-CGAATGAAAGGCTGTCATTTTATGTTT-T-ATGATCCAAACATTCAATTA
64 ATAGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCATGTTTCTCA--AGGCAAACATCCAATTA
* * * *
1199243 TGAT-TTTTTTAACCTAAAA-CAAAAAAAATTCATCTTAAAATCATTTATAAGGTTATAAAACCA
126 TGATCTGTTTTAACCTAAAATGAAAAAAAATTCAT-TTAAAATCATTTATAACGTTATAAAACAA
* * *
1199306 CTTAAAGC-GACTAACAAGGCTTTCG-AAGACATGAGT-AGCTATAAATGGACTTATCTAGTCAA
190 CTTAAA-CAGAGTAACAAGGCTTTCGAAAG-CATGAGTGA-CTATAAATGGACTTTTCTTGTCAA
* * * *
1199368 GGGATGGCTTT-AGCTTCATGTTTCCCTAAGGTAAACATCCAATTATGATCTATTTTAACCT-AA
252 TGGATGGCTTTCA-CTTCATGTTT-CTTAAGGCAAACAT-CAATTATGATTTATTTTAA-CTAAA
* * * * * * * ** * * *
1199431 AAT--AAAAAAATGCAA-TTGACAATCATTTCTAAGGTTGTAAAACAACATAAAACAACTAACAA
313 AATGAAAAAAAATTCAACTT-AAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTA
* * * * * * * * * * * **
1199493 GGCTTTCGAAGGTATTAGTGGCTATAAATAGAATATTCTTGTCTATGGATGGCTTTTGCTTCATG
377 GGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG
** * * * * * * *
1199558 TTTTCTTAA-GTAAATATCCAATT-TGATCTATTTTAACTAAAAATGATAAAAGAAGTCAACCTC
442 --TTCCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-A-AAAAAAATTCAA-TTT
1199621 AAA-TCA
502 AAACTCA
* *** * * * * * *
1199627 TT-TATAAGATTATCAAATTGTTTAAAATGAGTAACTAGGCTCTCAAAGGCATGAGTGACTATCA
1 TTATA-AAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * ** * *
1199691 ATAGACTTTTCTTGTCAACGGATGACTTTCATTTCACGTTTCT-AGAAGCAAACAT-CATATTAT
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA-AGGCAAACATCCA-ATTAT
* * * * * * * *
1199754 GATTTGTTTTAA--TAGAAAGTGAAAGAGAATTTAAATGAAACTCATTTATGA-GATTATAAAAC
127 GATCTGTTTTAACCTA-AAA-TGAAA-AAAAATTCATTTAAAATCATTTATAACG-TTATAAAAC
* * * * * * * * * *
1199816 CATTTAAAGTA-AGTAACTAGACTTTTGAAAGGATGAGTGATTATAAATGGATTTTTCTTGTAAA
188 AACTTAAA-CAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * *
1199880 TGGATGGCTTTCACTTCATGTTTCCTCAGGCAAATATCCAACTATGATCTATTTTAATCT-AAAA
252 TGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAA-CTAAAAA
* * * * * * * * *
1199944 T-AAAAGAATTTCAATTTAAAATCATTTAT-AAAGTTATACAACCACTTAAA-TAGGCTAACAAG
315 TGAAAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGCAAG-TAACTAG
** * * * *
1200006 GCTTTTGAAGGCATGAGTGGCTATAGATGGACTTTTCTTATCAATAGATAGCCATT-AATTCATG
378 GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAG-CTTTCACTTCATG
* ** * * * * *
1200070 TTTCCTAAGTTAAACATCCAATTACGATCTTTTTTAACCT-AACATCAAAAAAATTTCAACTTAA
442 -TTCCAAAGGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAAT-AAAAAAAATTCAATTTAA
* *
1200134 AATCG
504 ACTCA
* * * * *
1200139 TT-TATGAGATTATAAAACCATTTAAAAAG-GA-TAACTA-GCGTTTTAAAGGCATGAGTGATTA
1 TTATA-AAG-TTATAAAACCATTT--AAAGTGAGTAACTAGGC-TTTCAAAAGTATGAGTGAATA
* * * * * * * * *
1200200 TAAATAGACTATTCTTGTGAATGGAAGACTTTCACTTTAAGTTTCACAAGGTAAACATCCAATTA
61 TAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTA
* * * ** * * * * *
1200265 TGATTTATTTGAACAAAAAATG-AAAAAAATTCAACTTAAAATTATTGATGAA-GTTGTAAAACC
126 TGATCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTAT-AACGTTATAAAACA
* ** * * * * * ** * * * *
1200328 ATTTAAAGTGAGTAACTATGATTTTGATAGCAAAAGTGATTATAAATGGACTCTTCTTATGAATG
189 ACTTAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * *
1200393 GAAGGCTATT-GCTTCAAGTTT-TACAAGGCAAACATTCAATTATG-TTCTGTTTTAGCAAAAAA
254 GATGGCT-TTCACTTCATGTTTCT-TAAGGCAAACA-TCAATTATGATT-TATTTTAACTAAAAA
** * * * * ** * * *
1200455 TGAAAAAAAATTCTTCTTCAAATCATTTATAAAATTATAAAACCACTTAAAGTGACTAACAAGGA
315 TGAAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGC
* * * **
1200520 TTTCAAAGACATGAGTGATTATAAATGGACTTTTC-TAGTCAAT-GAATATCTTTTGCTTCACAT
380 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA-TCAATAG-ATAGCTTTCACTT--CAT
* ** * * ** * ** * *
1200583 -TTCCCATTGTATACATTAAATTATAATCTAATTTAACGTAAAACT-AAAAAAATTTAATTTAAA
441 GTTCCAAAGGCAAACATCCAATTATGATCTGTTTTAAC-TAAAAATAAAAAAAATTCAATTTAAA
*
1200646 ATCA
505 CTCA
* * * * * * ** * * * * *
1200650 TTTATAAAGTTTTAAAATCACTTAAAGTGAGGAA-TAAAGTTTTTGAAGGAATAAATGACTATAA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACT-AGGCTTTCAAAAGTATGAGTGAATATAA
* * * * ** * * ** *
1200714 ATAGACTTCTCTTATCAATGGATGGCTTTTGCTTTACATTTCTCAATGTAAACATTAAATTATAA
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
** *** * * * * *
1200779 TCTAATTTAAGGAAAAATGAAAACAAATTCAATTTAAAATCATTAATAAAGTTATAAAACCAC-A
129 TCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACTT
** ** * * *
1200843 ATAAGTGAGTAACAAGATTTTC-AATGACATGAGTGACTATAAATGGACTTTTCTTATAAATGGA
193 A-AACAGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
** ** *
1200907 TGGCTTTTGCTTCATGTTTCCCAAGGCAAACATCCAATTATGATCTT-TTTTAA-TGAGAAATGA
256 TGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGAT-TTATTTTAACT-AAAAATGA
* * * * * ** * *
1200970 AAAAAATTTTAAATTAAAATCATTAATGAGACTATAAAATGA-TTGAAGCCAGTAACTAGGCTTT
318 AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTT
** * * * * * * * * * * * * *
1201034 TGAAGGTAAGGGTGATTATAAATAGATTTTTCTTGTGAATTGAAAGCTTTCACTTTACGTTTCAT
383 CAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATGTTCCA-
* * * * * * * *
1201099 GAGGTAAACATCCAATTATGATCTGTTTGAACCAAAAATAAAAAAAA--AAACTTAAAATTA
447 AAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATTCAATTTAAACTCA
* * ** * * * *
1201159 TTTATGATA-TTATAAAACCATTTAAAGCT-AGTAACCATACTTTCGATAGCATGAG-CAATTAT
1 -TTAT-AAAGTTATAAAACCATTTAAAG-TGAGTAACTAGGCTTTCAAAAGTATGAGTGAA-TAT
* * * * * *
1201221 AAATAGATTTTTCTCT-TCAATGGAAGGTTTTCACTTCATGTTT-TACAAGCCAAACATTCAATT
62 AAATAGACTTTTCT-TGTCAATGGATGGCTTTCGCTTCATGTTTCT-CAAGGCAAACATCCAATT
* * * * *
1201284 ATGATTTGTTTTAATCTAAAA-CAAAAACAA-TCATCTTAAAATCATTTATAACGTTATAAAACC
125 ATGATCTGTTTTAACCTAAAATGAAAAAAAATTCAT-TTAAAATCATTTATAACGTTATAAAACA
** * * * * *
1201347 ACTTAAAGTGACTAACAAGGCTTTCGAAGGCATGAATGACTATAAATGGACTTCTCTTGTCAAGG
189 ACTTAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * *
1201412 GATGGCTTTCACTTCATGTTTCCCT-ATGCAAACATCCAATTATGATCTT-TTTTAACTTAAAAT
254 GATGGCTTTCACTTCATGTTT-CTTAAGGCAAACAT-CAATTATGAT-TTATTTTAACTAAAAAT
* ** * * * * ** * * *
1201475 GAAAAAAAAATGTAGTTGACAATCATTTAT-ATGGTTATAAAACAACATAAATCAAGAAACAAGG
316 GAAAAAAAATTCAACTT-AAAATCATTTATGA-GATTATAAAACCATTTAAAGCAAGTAACTAGG
** * * * * * * * * *
1201539 CTTTTGAAGGCATTAGTGGCTATAAATGAAATTTTCTTGTCAATGGATGGCTCTT-GCTACATGT
379 CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCT-TTCACTTCATGT
* ** * * * * * * **
1201603 CTACTGAGGAAAACATCCAATTCTTATATGTTTTAACTAAAAATTTAAGAAAAAGTCAACCTAAA
443 -TCCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAA--TAAAAAAAATTCAATTTAAA
*
1201668 ATCA
505 CTCA
* * * * * * * *
1201672 TCTAT-AAGATTAAAAAACTATTTAAAGTGAGTAATTAGGCTTTCAAATGCATGGGTGACTATCA
1 T-TATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* ** * **
1201736 ATAGACTTTTCTTGTCAAGGGATGGCTTTCATTTTTCA--TTTCTCAAGGAAAACATCTTATTAT
64 ATAGACTTTTCTTGTCAATGGATGGCTTTC--GCTTCATGTTTCTCAAGGCAAACATCCAATTAT
** * * * * *
1201799 GATCTGTTTTAATATAAAAT-AAAAAAAATTCAACTTAAACTC-TTTAATGA-GATTATATAACC
127 GATCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTT-ATAACG-TTATAAAACA
* *** * * * ** * *
1201861 ATTTAAAGTTAATAACTAGGCTTTCAAAAAG-ATGAGTGTTTATAAATAGACTTTTCTTGTTAAT
189 ACTTAAACAGAGTAACAAGGCTTTC-GAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* * ** * *
1201925 GGATGGCTTTCACTTCATGTTT-TCTAAGGCAAACATCCAATTATGGTATGCTTTAATTTAAAAT
253 GGATGGCTTTCACTTCATGTTTCT-TAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAAT
* * * * * * * * * * *
1201989 G-AAAACAATTCAATTTAAAATTATTTAT-AAAGTAGTACAAGCACTTAAA-TAGATTTA-TCAG
316 GAAAAAAAATTCAACTTAAAATCATTTATGAGATTA-TAAAACCATTTAAAGCA-AGTAACT-AG
* * * * * * * **
1202050 GCTTTTAAGGGCATGAGTGACTATAGATGGACTTTTCTTTTC-ATGGATGGGTTTTGCTTCATGC
378 GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-
* * * * * *
1202114 TTCTC-AA-GTAAAGCATCCAATTATGATATTTTTTAACCT-AAAATGAGAAAAATTCAACTTAA
442 TTC-CAAAGGCAAA-CATCCAATTATGATCTGTTTTAA-CTAAAAATAAAAAAAATTCAATTTAA
*
1202176 AATCA
504 ACTCA
* * * * * ** * * *
1202181 TT-TATAAGATTACT-AAACCGTTTAAAGAGGGTAACAAGCCTTTTGAAGGCATGAGTGATTATA
1 TTATA-AAG-TTA-TAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATA
* ** * * * ** * * *
1202244 AATGGACTACTCTTGTGAATGGAAGGCTTTCACTTCAACTTTC-AAGAGGCAAATATCTAATTAT
63 AATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA-AGGCAAACATCCAATTAT
** * ** * * * *
1202308 GATCTGTTTTAACAAAAAATG-AAAAAAATTCAAATTAGGATTATTGATGAA-GTTGTAAAACCA
127 GATCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTAT-AACGTTATAAAACAA
* * * * ** *
1202371 TTTAATGCAG-GTAACTAGGCTTTTGATGGCATGAGTGA-TAATAAATGGA-TGTTTCTTGTGAA
190 CTTAA-ACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACT-ATAAATGGACT-TTTCTTGTCAA
* * * * * * * * * * *
1202433 TGGAAGACTTTCGCTTCATGTTTCATGAGGCAGACATTTAATTATGATATGTTTTAGC-ATAAA-
252 TGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACA-TCAATTATGATTTATTTTAACTAAAAAT
* ** * * * * * * * *
1202496 CAAAAAAAA-TCTTCTTAAAATTATTCCTA-AAG-TTATAAAACCAATTAAATCGACTAACAAAG
316 GAAAAAAAATTCAACTTAAAATCATT--TATGAGATTATAAAACCATTTAAAGCAAGTAACTAGG
** * * *
1202558 CTTTTGAAGGCATGAGTGACTATAAATGGAC-TCTCTTTGTCAATAGAT-GCCTTTCGCTTCATA
379 CTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC-TTATCAATAGATAG-CTTTCACTTCAT-
* * * *** * * ** ** * * * *
1202621 ATGCCCAATTTAGACATCAAATTATGATCTAATTTAA-TGTGAAATTAGAAAATTTTAATTTAAA
441 GTTCCAAAGGCAAACATCCAATTATGATCTGTTTTAACT-AAAAATAAAAAAAATTCAATTTAAA
*
1202685 ATCA
505 CTCA
* * ** * * ** * * * *
1202689 TTTATAAAGTTTTAAAACCACTTAAAGCAAGTAA-TAAGGTTTTCGATGGCATGCGTGACTGTAA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACT-AGGCTTTCAAAAGTATGAGTGAATATAA
* * * *
1202753 ATAGATTTTTTTTGTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGCAAACATCAAATTATGA
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* * * * * * * * *
1202818 TATGTTTTAACC-AAAACT-AAAAGATATTCAACTTGAAGTCATTTATGA-GATTAT-AAACCAT
129 TCTGTTTTAACCTAAAA-TGAAAAAAAATTC-ATTTAAAATCATTTATAACG-TTATAAAACAAC
** ** * * * * * * *
1202879 TTAAAGTGAGTAA-TTGAGCTTTCGAAGGTATTAATGACTATAAATGGACTTTTCCTATCAAGGG
191 TTAAACAGAGTAACAAG-GCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * *
1202943 ATGGCTTTCATTTCATGTTTCTCAAGCCAAACATCTAATTATGATATGA-TTTAA-TCAAAAATT
255 ATGGCTTTCACTTCATGTTTCTTAAGGCAAACATC-AATTATGAT-TTATTTTAACT-AAAAATG
* * * * **
1203006 AAAAATAGTTCAACTTAAAGTCATTTATGAGATTATAAAAACATTTAAAGTTAGTAACTAGGCTT
317 AAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTT
* * * * * * *
1203071 TCGAACGCATGAGTGAATATAAATAGACTTTTCTTGTAAATGGATAGCTTTCACTTCATGTTTCT
382 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-TTC-
* * * * * * *
1203136 C-GAGACAAACATCAAATTATCATCTATTTTAACTTAAAATGAAAAAAAA-TCAATTTAAAGTCA
445 CAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTAAACTCA
** * * * * ** * * *
1203199 TTTATAGTGTTATACAACAACTTAAA-TCGACTAACTAGGCTTTTGAAGGTATGAGTGACTATAT
1 -TTATAAAGTTATAAAACCATTTAAAGT-GAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * * *** * *
1203263 ATGGACTTTTTTTGTCAATGGATGGCTTTCACTTCATGTTTCTTGGGGTATACATCCAATTATGA
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* * * * * *
1203328 TCTATTTTAA-CTAAAAATAAAAAAAAATTTAGCTTAAAATCATTTATGA-GATTATAAATC-A-
129 TCTGTTTTAACCT-AAAATGAAAAAAAATTCA-TTTAAAATCATTTATAACG-TTATAAAACAAC
* * * * * *
1203389 TATAAATC-GAGTAACGAGGCATTCAAAAGCATGAGTGATTATAAATGGAGTTTTCTTATCAATG
191 T-TAAA-CAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* *** * * * *
1203453 GATGACTTTTC-CTTCA-CAATCTCTAAGGTAAACATTCAATAATGATATGTTTTAACCT-AAAA
254 GATGGC-TTTCACTTCATGTTTCT-TAAGGCAAACA-TCAATTATGATTTATTTTAA-CTAAAAA
* * * * * * * * ** *
1203515 TGAAAAAAAAATCAATTTAAAGTCATTCATAAG-TTGTAGAACCACTTATGGCAAGTAACGAGGC
315 TGAAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGC
* * * ** * * * * **
1203579 TTTTC-AAGTCATAAGTAAAGATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTT
380 -TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-T
* * * * * *
1203643 TCCTAAGGCAAACAACCAATAATGATATGTCTTAACTGAAAATTAAAAAAAAATTC-ATCTTAAA
443 TCCAAAGGCAAACATCCAATTATGATCTGTTTTAACT-AAAAAT-AAAAAAAATTCAAT-TTAAA
*
1203707 ATCA
505 CTCA
* * * * * * * *
1203711 TTTATAAAGTTATAAAACCACTAAAAGTGAGTAAC-ATGGCGTTCGAAGGCATGGGTGATTATAA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTA-GGCTTTCAAAAGTATGAGTGAATATAA
* * * * * *
1203775 ATGGAGTTCTCTT-TCCAATGGATGGCTTTTGCTTCATGTTTCTCAACGTAAACATCCAATTATG
64 ATAGACTTTTCTTGT-CAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATG
* * * * * *
1203839 GTCTGTTTTAACC-AGAAAT-AAAAAATAATTCAACTCAAAATTATTTATGAGGTTATAAAATC-
128 ATCTGTTTTAACCTA-AAATGAAAAAA-AATTC-ATTTAAAATCATTTATAACGTTATAAAA-CA
* ** * * * ** * * *
1203901 A-TGTCAAGTGAGTAACTAGGATTTCGAAGGCATGAACGGCTATAAATAGACTTTCACTTGTCAA
189 ACT-TAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTT-TCTTGTCAA
* * * * * *
1203965 TGGATGGCTTTCACTTCACGTTTCTCAAGGCAAACATCCAATTATTATTTACTTTCACCAAAAAT
252 TGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAA-
* * * * * *
1204030 TTTAAAAAAAAACCTCAACCTAAAATCATTTATAAGATTATAAAACCAGTTAAAGCAAGTAATTA
315 --TGAAAAAAAA-TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTA
** * * *** *
1204095 GGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTGA--AAAAGGATGGCTTTTGTTTTA
377 GGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTT-ATCAATA-GATAGCTTTCACTTCA
* ** ** ** * * * *
1204158 TTTATCCTGATACAAACATTTAATCATGATCTGTTTTAATTAAAAATGAAATAGAATTCAATTTA
440 TGT-TCCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTA
1204223 AACTCA
503 AACTCA
* * *
1204229 TTAT-GAGATTATAAAACCATTTAAAGTGAGTAACTA-CCTTTCAAAAGAATGAGTGAATATAAA
1 TTATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * * *** *
1204292 T-GAACCTTTCTTGTGAATGGATGTCTTTTATTTCATGTTTCTCAAGGAAAACATCCAATTATGA
65 TAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* * *
1204356 TCTGTATTAACCT-AAATGAAAAATAAATTCTATTTAAAATGATTTATAACGTTATACAACAACT
129 TCTGTTTTAACCTAAAATGAAAAA-AAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACT
* * * * * * *
1204420 TAAACAGATTGACAAGGCTTTTGAAAGTATGAGTGACTACAACTGGACTTTTCTTGTCAATTGAT
192 TAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * * * * * *
1204485 AGCTTTCACTTTATGTTTCTTGAGCCATACATCATATTATCATCTATTTTAACTAAAAATGAAAA
257 GGCTTTCACTTCATGTTTCTTAAGGCAAACATCA-ATTATGATTTATTTTAACTAAAAATGAAAA
** * * * *
1204550 ACAAATTCAGGTTTAAATCATTTATGATATTA-AAGACCATTTAAATCAAGTAAC-ATGGCTTTC
321 A-AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTA-GGCTTTC
* * * * *
1204613 GAAGGTATGAGTGATTACAAATGGACTTTTCTTATAAATAGATAGCTTTTC-CTTCATGTTCCCA
384 AAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGC-TTTCACTTCATGTT-CCA
* * * *
1204677 AAGGCAAACATCCAATAATGATCTGTTTTAACTAAAAATAAAAAAAAATGAATTTAAAGTCA
447 AAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATTCAATTTAAACTCA
* * * * *
1204739 TTCATAAAGTTATAAAACCACTT-AAGATGGGTGACGAGGCTTTC-AAAGTTATAAGTGAATATA
1 TT-ATAAAGTTATAAAACCATTTAAAG-TGAGTAACTAGGCTTTCAAAAG-TATGAGTGAATATA
* * *
1204802 AATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTC-CTAAGGCAAACAACCAATAAT
63 AATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAGGCAAACATCCAATTAT
* * * * * * * *
1204866 GATTTGTTTAAACCAAAAATTAAAAAAAAATCATCTTAAAATCATTTATAAAGTTACAAAACTAC
127 GATCTGTTTTAACCTAAAATGAAAAAAAATTCAT-TTAAAATCATTTATAACGTTATAAAACAAC
* * * * * ** * *
1204931 -T-AACAATGAGTAACATGGCATTCGAAGGCATGAGTGACCATAAACGGGGTTCTCTTGTAAATG
191 TTAAAC-A-GAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * * * * *
1204994 GATCACTTTCGCTTTATGTTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCAGAAATGA
254 GATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATGA
* * *
1205059 AAAATAATTCAACTTAAAATTATTTATGAGATTATAAAATCATTTAAAGTGC-A-TAACTAGGCT
318 AAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAA--GCAAGTAACTAGGCT
* * * * *
1205122 TTCGAAGGCATGAATTACTATAAATGGACTTTTTTTATCAA-AGGATAGCTTTCACTTCACGTTT
381 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATA-GATAGCTTTCACTTCATG-TT
* ** * ** * *
1205186 CTCAATA--CAAACATCAAATTATGATCTAATTTAA-TAAAAAATGAAAAAACCTCAACTTAAAA
444 C-CAA-AGGCAAACATCCAATTATGATCTGTTTTAACT-AAAAATAAAAAAAATTCAATTTAAAC
1205248 TCA
506 TCA
* * * * * * * *
1205251 TTTATAAAGTTATAAAACCA-CTAAAGTGA-TAAGCAAGGCTTTCGAAGGCATAAATGACTATAA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAA-CTAGGCTTTCAAAAGTATGAGTGAATATAA
** * * * * * * * * *
1205314 ATAGAGGTGTCTTATTAATGAATGGCTTTCGTTTCATATTTTTCAA-GCTAAATATCCAATCATG
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGC-AAACATCCAATTATG
* * * * * *
1205378 ATATGTTTTAA-CTAAAAAT-AAAAAGAACTTCAGCTTAAAATAATTTATGA-GATTATAAAATA
128 ATCTGTTTTAACCT-AAAATGAAAAA-AAATTCA-TTTAAAATCATTTATAACG-TTATAAAACA
** * * * *
1205440 ACTTAAAGTGAGTAACTAGGCTTTCG-AAGATATTAGTGACTATAAAAGGACTTTTCTTGTCAAT
189 ACTTAAACAGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAAT
* ** ** * ** * * **
1205504 GGATGGTTTTTGCTTCACATATCCCAAGGAAAACTTCCAATTATGATTTCCTTTAACTAAAAATG
253 GGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATG
* * ** * * * *
1205569 AAAACAAATTAAACCCAAAGAT-ATTTATAAGATTATAAAACCGTTTAAAGCAAATAATTAGGCT
317 AAAAAAAATTCAACTTAAA-ATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCT
* * * * **
1205633 TTCAAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAAGAGATAGCTTTC-GTTTTTCGTTC
381 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCAT-GTTC
* * * * * * * *
1205697 CTAAGCCAAACATCTAATTATAATTTGTTTTAACTAAAAATGAAACATAATTCAACTTAAACTCA
445 CAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTAAACTCA
* * *
1205762 TTAT-GAGATTATAAAACCATTTAAAGTGGGTAACTAAGCTTTCAAAAGTATGAGTGAATATAAA
1 TTATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * **
1205826 TAGACTTTTTTTGTCAATGGATGGCTTTCACTTCATGTTTCTTGAGGCAAACAT-CAATTATGAT
65 TAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGAT
* * *
1205890 CTGTTTTAACCTAAAATGAAAAAAAATTAATTTAAAATCATTTATAACATTATAGAATC-ACTTA
130 CTGTTTTAACCTAAAATGAAAAAAAATTCATTTAAAATCATTTATAACGTTATA-AAACAACTTA
* * ** * * *
1205954 AA-AGACTAACATGAATTTCG-AAGACATGAGTGACTATAAATTGACTTTTTTTATCAATGGATG
194 AACAGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * *
1206017 GCTTTTATTTCACAT-TTTCCT-AGGCAAACATCTAATTATGATTTGTTTTAA-TAAAATATGAA
258 GCTTTCACTT--CATGTTTCTTAAGGCAAACATC-AATTATGATTTATTTTAACTAAAA-ATGAA
* ** * *
1206079 AAAAAATTTAAC-TAAAATTTTTTTATGAAATTATAAGACCATTTAAAGCAAGTAACTAGGCCTT
319 AAAAAATTCAACTTAAAA-TCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGG-CTT
* * * * * * * *
1206143 T-GATGGCATGAGTGATTATAAATAGACTTTTCTTATCAAT-GAATGGCCTTCGCTTCACATTTT
382 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAG-ATAGCTTTCACTT--CATGTT
* * * * * * *
1206206 TC-AAGGCAAACAACCAATTATGATCTGTTTCAACCT-AAAATGGAGAAAAAA-TCAATTCACAG
444 CCAAAGGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAAT--AAAAAAAATTCAATTTAAAC
1206268 TCA
506 TCA
* * * ** * ** * * * * * * **
1206271 TTTCTAAGGTTATAAAACAATGGAATGCAAGTATCAAAGCTTTCAAAGGCATGAATGGCTATAAA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * * * * ** * *
1206336 TAGATTTTTTTTATCAATGGATGCCTTTCGCTTCATGTTTTTTGAGGTAAACATCCAATTATGAA
65 TAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGAT
* * * * * *
1206401 CTGTTTTCACCAAAAATTAAAAAAAAATTCAGTCTAAAATTATTTATAA-GATTATAAAATC--G
130 CTGTTTTAACCTAAAA-TGAAAAAAAATTCA-TTTAAAATCATTTATAACG-TTATAAAA-CAAC
* * * **
1206463 TATAAAGCA-AGTAACTA-GCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTAATCAATG
191 T-TAAA-CAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** * * *
1206526 GATGGCTTTTGCTTCATGTTTCTCAAGAC-AACATTCAATTATGATTT-TCTTTAACAAAAAATG
254 GATGGCTTTCACTTCATGTTTCTTAAGGCAAACA-TCAATTATGATTTAT-TTTAACTAAAAATG
* * * * *
1206589 AAAAAAAAAACTCAACATAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAATTAGGC
317 --AAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGC
* * * * * * * * *
1206654 TTTCAAAGGCATAAGCGACAATAAATGTACTTTTCTTGTCAAGAGATGGCTTTCATTTTACATTT
380 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCA-CTT-CATGT
* * * * *
1206719 TCC-ATGGCAAACCTCTAATTATGATCTGTTTTAA-TAAAAATAAAATAGAATTCAACTTAAACT
443 TCCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAA-AAAATTCAATTTAAACT
1206782 CA
507 CA
* * * *
1206784 TTAT-GAGATTAT-AAACCATTTAAAGCGAGTAACTAGCCTTTCAAAAGTGTGAGTGAATATAAA
1 TTATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * * * * * * * *
1206847 TGGACCTTTCTTGTGAATGGATGGCTTTCACTTCATATTTCTCGAGACAAACATCTAATTATAAT
65 TAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGAT
* * * * *
1206912 CTATTTTAACCTAAAATG-GAAAAAATTCTATTTAAAATGATTTATAACATTATACAACAACTTA
130 CTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACTTA
* * * ** * * * * *
1206976 AACAGACTAATAAGGCTTTTGAGGGCATGAATGACTAGAAATTGATTTTTTTTGTCAATGGATGG
194 AACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* * * * * *
1207041 CTTTTCACTTCATGCTTCTTAAGTCAAACACCCAATTATGATCTATTTGAACTAAAAATG-GAAA
259 C-TTTCACTTCATGTTTCTTAAGGCAAACA-TCAATTATGATTTATTTTAACTAAAAATGAAAAA
* * * * * * *
1207105 AAATTCAGCTTGAAATCATTTATCATATTAT-AAACCATTTAAATCGAGTAACAAGGCTTTCAAA
322 AAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCAAA
* * * * * * ** * *
1207169 GGTATGAGTGACTACAAATAGACATTTCTTATCAGTAGATGGCTTTTC-CTTCGCGTTCTAGAGG
387 GGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGC-TTTCACTTCATGTTCCAAAGG
* * * **
1207233 CAAACATCCGATAATGATCTGTTTTAACCT-AAAATAAAAAAAATTCAGTTTAAGGTCA
451 CAAACATCCAATTATGATCTGTTTTAA-CTAAAAATAAAAAAAATTCAATTTAAACTCA
* * * * * *
1207291 TTCATAAAGTCATAAAACTACTTAAGGCGAGTGA-TGAGGCTTTC-AAAGTAATGAGTGAATATA
1 TT-ATAAAGTTATAAAACCATTTAAAGTGAGTAACT-AGGCTTTCAAAAGT-ATGAGTGAATATA
* * * * *
1207354 AATGGACTTTTCTTGTCAATGGATGACTTTTGCTTCATGTTTC-CTAAGGCAAACAACCAATGAT
63 AATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAGGCAAACATCCAATTAT
* * * * * *
1207418 GATAC-GTTTTAATC-AACAATTAAAAAAAATTCATCCTAAAATCATTTATAAAGTAATAAAACT
127 GAT-CTGTTTTAACCTAA-AATGAAAAAAAATTCAT-TTAAAATCATTTATAACGTTATAAAACA
* ** * * * * * * * *
1207481 ACTAAAAGTGAGTAACATGGCATTCGAAGGCATTAGTAACTAT-AATGGAGTTCTCTTGTCAATT
189 ACTTAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * *
1207545 GATGGCTTTCCCTTTAGGTTTCTCAAGACAAACATCCAATTATGATTTGTTTTAACTAAAAAT-A
254 GATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATGA
* * * *** *
1207609 AAAAATAATTCAACTTAAATTTATTTATGAGATTATAAAACTATTTAAAGTGGGTAACTACGCTT
318 AAAAA-AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTT
** * * * * *
1207674 TTGAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCGCTTCATGTTTCT
382 TCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-TTCC
** ** * * * ** *
1207739 TGAGAAAAACATCCAATTATAATTTCT-TTTTAACAAAAAATGAAAAAAAAACTCAACCTAAAAT
446 AAAGGCAAACATCCAATTATGA--TCTGTTTTAACTAAAAAT--AAAAAAAATTCAATTTAAACT
*
1207803 TA
507 CA
* * ** * * *
1207805 TT-TATAAGATTATAAAATCGTTTAAAGCAAGTAATTAGGCTTTCAAAGGCATGAGT-AACTATA
1 TTATA-AAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAA-TATA
* ** ** * * *
1207868 AATGGACTTTTCTTGTCAAAAGATGGCTTTCATTTTACAT-TTTC-CAAGGAAAATATCTAATTA
63 AATAGACTTTTCTTGTCAATGGATGGCTTTC-GCTT-CATGTTTCTCAAGGCAAACATCCAATTA
* * * * * *
1207931 TGATATGTTTTAA-CTAAAAATGAAACAAAAGTCAGCTTAAACTCA-TTATGA-GATTATAAAAT
126 TGATCTGTTTTAACCT-AAAATGAAAAAAAATTCA-TTTAAAATCATTTATAACG-TTATAAAA-
* ** * * * * * * *
1207993 C-ATTTAAAGTGAGTAACTAGCCTTTCAAAAGCATGAGTGAATATAAATGGACCTTTCTTATGAA
187 CAACTTAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * *
1208057 TGGATGTCTTTCACTTCATGTTTCTCAAGGCAAACATCCAATTATGATCTGTTTTAACCT-AAAA
252 TGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAA-CTAAAAA
* * * * * * ** * * * * *
1208121 TGAAAAAAAAATCTATTTAAAATTATTTATAACG-TTATACAAGAACTTAAA-TAGACTGACAAG
315 TGAAAAAAAATTCAACTTAAAATCATTTATGA-GATTATAAAACCATTTAAAGCA-AGTAACTAG
* * * * *
1208184 GCTTTCGAAGGCATGAGTGATTACAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCATGT
378 GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-
*** * ** * * ** *
1208249 TTCTTGAGCCATTCAT-CATATTATGGTCTATTTTAACCGAAAATGAAAAAAAAAT-AAGTTTGA
442 TTCCAAAGGCAAACATCCA-ATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAA-TTT-A
1208312 AA-TCA
503 AACTCA
* * * * * * * * *
1208317 TTTATGATA-TTAT-AAGCCATTTAAA-TCAAGTAA-TAAGGCTTTCGAAGGCATGAATGATTAC
1 -TTAT-AAAGTTATAAAACCATTTAAAGT-GAGTAACT-AGGCTTTCAAAAGTATGAGTGAATAT
* * * * * * * *
1208378 AAATAGACTTTTCTTATTAGTGGATAGCTTTCCCTTCATGTTT-TAAACGCAAACATCCAATAAT
62 AAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTAT
* * * * * * * * * *
1208442 GATCTATTTTGACATGAAAT-AAAAAAAATTGAATTTAAAGTCATTCATAAAGTCATAAAACCAC
127 GATCTGTTTTAACCTAAAATGAAAAAAAATT-CATTTAAAATCATTTATAACGTTATAAAACAAC
*** ** * ** * * * * ** *
1208506 TTAAGGTGAGCGACGAGAATTTC-AAAGTAATGACTAAATATAAATGGGTTTTTCTTGCCAATGG
191 TTAAACAGAGTAACAAGGCTTTCGAAAG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * * * * *
1208570 ATGACTTTCGCTTCATGTTCCTTAAGGTAAACCACCAATAATGATATGTTTTAA-TCCAAAATTA
255 ATGGCTTTCACTTCATGTTTCTTAAGGCAAA-CATCAATTATGATTTATTTTAACT-AAAAATGA
* * * * * * *
1208634 AAAAAAAATCATCTTAAAATCATTTAT-AAAGTTAAAAAACCACTAAAAGCGAGTAAC-ATGGCA
318 AAAAAAATTCAACTTAAAATCATTTATGAGA-TTATAAAACCATTTAAAGCAAGTAACTA-GGC-
* * * * * ** * * * * *
1208697 TAT-GATGGCATAAGTGACTATAAATAGTGTTCTCTTGTCAATGGATGGCTTTCACTTCACGTTT
380 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-TT
* * * * * * * * * * * *
1208761 CTCGAA-GAAAATATCTAATTATGATTTGTTTTAACCAGAAATGAAAATAATTCAACTTAAAATT
444 C-CAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATTCAATTTAAACTC
1208825 A
508 A
** * * * * *
1208826 TT-TATGGGCTTATAAAACCATTTAAAGTGCGTAACTAGGCTTTCAAAGGCATGAATGACTATAA
1 TTATA-AAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * * * ** *
1208890 ATAGACTTTTCTTGTCGATGGATGGCTTTTGCTTCACGTTTC-CTAGTATAAACATCAAATTATG
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAG-GCAAACATCCAATTATG
** *** * * *
1208954 ATCTAATTTAATGAAAAATG-AAAAGAATTCAATTTAAAATCATTTATAAAGCTATAAAATC-AC
128 ATCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAA-CAAC
* * * * * * * * *
1209017 -TAAAAACGAGAAACAAGGTTTTTGAAGGCATAAGTGACTATAAATGGA-GTTTCTTGTCCATGA
191 TTAAACA-GAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
*** ** * * * *
1209080 ATGGCTTTTGTTTCACATTTTTTAAGGCAAGCATCCAATTATAATCTATTTTAACTAAAAATGAA
255 ATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATG-A
* * * * * *
1209145 AAAAAGAACTTCAGCTTAAAATAATTTATGAGATTACAAAACAACTTAAAGCTAGTAACTAGGCT
318 AAAAA-AA-TTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCT
* * * * ** * *
1209210 TTCGAAGGCATGAGTGACTATAAAAGGACTTTTTTTGTCAATTA-ATAGCTTTTGCGTCACGTAT
381 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAA-TAGATAGCTTTCACTTCATGT-T
*** * * * * * * * * * * * ***
1209274 CTTGAGACAAACTTCCAATCAGGATTTAG-TTTAGCCACAAATGAAAACAAACTGAGCCATAAA-
444 CCAAAGGCAAACATCCAATTATGATCT-GTTTTAACTAAAAAT-AAAAAAAATTCA-ATTTAAAC
*
1209337 TGGA
506 T-CA
** * * *** * ** ** * ** * * * ** *
1209341 CTT-T--TCTTGTCAAGGGA--TGACTTTCGT-TCTTTGTTTTCCAAGGCTAACA-TCTAATTAT
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAG-TATGAGT-GAA-TAT
* *** * ***** * * ** * * **
1209399 AACCT--A-TTTTAAC-TAAAAATGAAACAAAATTCAACTTAAACTCATTAT-GAGATTATAA-A
62 AA-ATAGACTTTT--CTTGTCAATG-GATGGCTTTC-GCTT-CA-TGTTTCTCAAG-GCA-AACA
* * * * ** * * *
1209458 ACCATTTGAAGCGAGTAACTATGCTTTCAAAAGTATAAGTGAATATAAATGGACTTTACTTGTGA
118 TCCAATT--A-TGA-T--C--TG-TTT-TAACCTA-AAATGAA-A-AAA---AATTCA-TT-T-A
* * * *** * * * ** *
1209523 ATGGATGGC-TTTCACTTCATGTT-TCTTGAC-AC--AAACATCATTTACGATTTG-TTT-TAAA
164 A--AAT--CATTT-A--TAACGTTAT-AAAACAACTTAAACA-GAGTAAC-A-AGGCTTTCGAAA
** * * * * ** * * ** * ** *
1209581 -CAAAAATTA-AAAAAATTCAATTTAAACTCATTTATAACATTATATAAGGACTTAAAACTGACA
218 GCATGAGTGACTATAAATGGACTTT----TC--TTGT--CA--ATGGATGG-CTT-TCACT-TC-
* * ** * * * ** * ******
1209644 AGGATTTC-GAAGGC-ATGAGCAATTATAAATTGACTTTT--CTCATCAATGGATTGCTTTTGCT
269 ATG-TTTCTTAAGGCAAACATCAATTAT-GATTTA-TTTTAACT-AAAAATGAAAAAAAATT-C-
* * * * * * *
1209705 TCACGTTTCCCTAGGGAAACATCCAATTATGATTTG-TTTTAATTAAACA-TGAGAA-AAATTTT
328 -AAC---T---T----AAA-AT-CATTTATGA---GATTATAA--AACCATTTA-AAGCAA--GT
* *** ** * * * * * * *
1209767 ACCTTAAAATTTTTTATGAG-ATTA-TAAGACCATTTAAAACGGGCAACTTTGCTT-TTAATGAT
372 AAC-T-AGGCTTTCAAAG-GCATGAGT--GA-C-TAT-AAA-TGG--ACTTTTCTTATCAAT-AG
* * * ** * * * ** * * **
1209829 ATGAGTGATTATAAATAGATTTTTTTTTCAATGG-ATGGCCTTCGC-TTTAT-AT-T-TCATAAG
425 AT-A--GCTT-T---CA-CTTCATGTTCCAAAGGCA--AACATC-CAATTATGATCTGTTTTAA-
* ** * *** * *
1209889 GC-AAACATCCAATTACAATTTGTTTTAACCTAAAA
478 -CTAAAAAT--AAAAAAAATTCAATTTAAACT--CA
* * * * * * * *
1209924 TGAGAAAAAAATTCAATTCACAATCATTTCTAAGGTTA-TAAAACTA--TTTAATACATGTACCA
1 T---TATAAAGTT--A-T-AAAACCA-TT-TAAAGTGAGT--AACTAGGCTT--T-CA---A--A
* ** * * ** *
1209986 AGACTTTCAAAGGCACAGGTGGCTATAAATAGAATTTTCTTATCAATGGATACCTTTCGCTTTAT
47 AG----T---ATG---A-GTGAATATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAT
* * * * * ** * * * **
1210051 GTTTTTTAAGGTAAACATCCAATTATAAACCATTTTCATCAAAAATGAAAAAATAA-TCAACCTA
101 GTTTCTCAAGGCAAACATCCAATTATGATCTGTTTTAACCTAAAATGAAAAAA-AATTC-ATTTA
* ** * * *
1210115 AAATTATTTATAA-GATTATAAAAC-TGTATAAAGC-GAGTAACTAGGCTTT-TAGAGGCATGAG
164 AAATCATTTATAACG-TTATAAAACAACT-TAAA-CAGAGTAACAAGGCTTTCGA-AAGCATGAG
* * * *** **
1210176 TGACTATAAATAGACTTTT-TTAGTCAATGGATGGCTTTCACTTCACGTATCCCGAGATAAACAT
225 TGACTATAAATGGACTTTTCTT-GTCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT
* * * * * * * * * *
1210240 CCAATTATGATTTACTTTAGCCAAAAATGAAAACAAACTGAGCCTAAAAACATTTATAAGATTAT
289 -CAATTATGATTTATTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATCATTTATGAGATTAT
* *** * * * *
1210305 AAAATCGCCTAAAGCAAGTAATTAAGCTTTTAAAGGCATGAGTGACTATAAATGGACTTTTCTTG
353 AAAACCATTTAAAGCAAGTAACTAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA
** * ** * * * * *
1210370 TCAAGGGAT-GACTTTCATTTTTTGTTTTCC-AAGGCTAACATCTAATTATAACCTATTTTAACT
418 TCAATAGATAG-CTTTCACTTCATG--TTCCAAAGGCAAACATCCAATTATGATCTGTTTTAACT
* *
1210433 -AAAATGAAACAAAATTCAACTTAAACTCA
480 AAAAAT-AAAAAAAATTCAATTTAAACTCA
* * *
1210462 TTAT-GAGATTATAAAACCATTTAAAGCT-AGTAACCAGGCTTTCAAAAGTATAAGTGAATATAA
1 TTATAAAG-TTATAAAACCATTTAAAG-TGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * * * * * ** *
1210525 ATGGACTATACTTATGAATGGATGGCTTTCACTTCATGTTTCTTGATGCAAACAT-CAATTATGA
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* * * * * *
1210589 TCTGTTTTAAACTAAAATG-AAAAAAATTCAATCTAAACTCATTTATAACATTATACAACGACTT
129 TCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACTT
* * * ** * * * * ** *
1210653 AAATAAACTAACAAGAATTTTGAAGGCATGAGTAACTATAAATTGAC-TTTCTCATCAATGGATA
193 AAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * ** * **
1210717 GCTTTTTCTTCATGTTTTCCT-AGGCAAACATACAATTATGATTTGTTTTATTTAAACATGCGAA
258 GCTTTCACTTCATG-TTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATGAAAA
* ** * *** **
1210781 AAATTTCAACTTAAAATTTTTTATGAGATTATAAGACCATTTAAAGTGGGTAACTAGGCTTTTGA
321 AAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCAA
* * * * * * * * * * * *
1210846 TGACATGAGTGATTATAAATAGA-TTTTTTTTTCAGTGGATGGCCTTT-GCTTTA-GATTTCCTA
386 AGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAG-CTTTCACTTCATG--TTCCAA
* *
1210908 AGGTAAACATCCAATTATGATCTGTTTTAACCT-AAAATAAAAAACAATTCAATTCACAA-TCA
448 AGGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAATAAAAAA-AATTCAATTTA-AACTCA
* * * * ** * * * * * * **
1210970 TTTCTAAGGTTATAAAACTATGTAATA-CAAGTATCAAGACTTTTAAAGGCATGAGTGGCTATAA
1 -TTATAAAGTTATAAAACCATTTAA-AGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAA
* * * ** * * * * * * *
1211034 ATAGAATTTTCTTATGAATGGATACCTTTTGCTTTATGTTTTTCATGGTAAACATCTAATTATAA
64 ATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* ** * * * * ** * * **
1211099 ACCATTTTCACC-AAAGATGAAAACATACTCAACCTAAAATTATTTACAA-GATTATAAAAC-TG
129 TCTGTTTTAACCTAAA-ATGAAAAAAAATTC-ATTTAAAATCATTTATAACG-TTATAAAACAAC
* * * * * **
1211161 TATAAACCGAGTAACTAGGCTTTCGGAGGCATGAGTGACTATAAATAGACTTTTCTAAAT-AATG
191 T-TAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATG
* * * * *
1211225 GATGGCTTTCACTTCATGTTTCTCAAGGAAAACATTCAATTATAATTT-TCATTAACAAAAAAT-
254 GATGGCTTTCACTTCATGTTTCTTAAGGCAAACA-TCAATTATGATTTAT-TTTAACTAAAAATG
* * * *** * *
1211288 AAAAAATAACTCAACCTAAAATCATTTATAAGATTATAAAATTGTGTAAAGCAAGTAATTAGGCT
317 AAAAAA-AATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCT
** * * * * ** * **
1211353 TTTGAAGGCATGAGTGACTACAAGTGAACTTTTCTTGTCAAGGGATGGCTTTCGTTTTACAT-TT
381 TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTC-ACTT-CATGTT
* * * * * * *
1211417 TCTAAGGCAAACATCTAATTATGATAT-TTTTAGCCAAAAATGAAACAAAATTCAATTTAAACTC
444 CCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTAAACTC
1211481 A
508 A
* * *
1211482 TTAT-GAGATTATAAAACCATTTAAAGTGAGTAAGTAGCCTTTCAAAAGTATGAGTGAATATAAA
1 TTATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * ** * **
1211546 TGGACTTTTCTTGTGAATGGATAACTTTCACTTCATGTTTCTTGAGGCAAACAT-CAATTATGAT
65 TAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGAT
* * * *
1211610 TTGTTTTAACCTAAAATG-AAAAAAATTCAATTTAAAATCATTTATAACATTATACAACGACTTA
130 CTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACTTA
* * * ** ** * *
1211674 AATACACTAACAAGG-TTTTTAAAGGCATGAGTGACTATAAATTTACTTTTTTTATCAATGGATG
194 AACAGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
** * * * * * *
1211738 GCTTTTGCTTCATGTTT-TCTAAGACAAACATCTAATTATGATATGTTTTAACCAAACATGAAGA
258 GCTTTCACTTCATGTTTCT-TAAGGCAAACATC-AATTATGATTTATTTTAACTAAAAATGAAAA
* * * * * * * * * **
1211802 AAATTTCAGCGTAAAAT-TTTTAATGAGATTATAAGACCATCTAAAGTATGTAATTAGGCTTTTG
321 AAAATTCAACTTAAAATCATTT-ATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCA
** * * * * * * * * **
1211866 ATTGCATGAATGATTATAAATAGACTTTTCTTGTCAATGGATGGCCTTCACTTCAAAT-TTTCTG
385 AAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTC--ATGTTCCAA
* * * * * *
1211930 AGACAAACATCTAATTATAATATGTTTTAACCT-AAAATTAAAAAAATTCAATTCACAA-TCA
448 AGGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAATAAAAAAAATTCAATTTA-AACTCA
* * * ** * * * *
1211991 TTTCTAAGGTTATAAAGCCACATAATACT-AGT-ACTAAGGCTTTCAAAGGCATGAGTGACTATA
1 -TTATAAAGTTATAAAACCATTTAA-AGTGAGTAACT-AGGCTTTCAAAAGTATGAGTGAATATA
* * * * * ** ** *
1212054 AATAGA-TATTTCTTATCAATGAATGACTTTCACTTCATGTTTTTTGAGATACACATCCAATTAT
63 AATAGACT-TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTAT
* * * ** ** * *
1212118 GAACTGTTTTCACCAAAAATGAAAAAATACA-AAACCTAAAATCATTT-TTATGATTATAAAAC-
127 GATCTGTTTTAACCTAAAATGAAAAAA-A-ATTCATTTAAAATCATTTATAACG-TTATAAAACA
* ** * * * *
1212180 -CGTATAGAGTGAGTAACTAGGCTTTCGAAGGCATGAGTAACTATAAATGAACTTTT-TTGATCA
189 AC-T-TAAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTG-TCA
** ** *
1212243 ATGGATGGCTTTTGCTTCACATTTCTTGAGGCAAACATCCAATTATGATTT-TCTTTAA-TAAAA
251 ATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTAT-TTTAACT-AAA
* * * * * * *
1212306 AATGAAAAAAAAAAACTCTACTTAAAATCATTTATAAGATCATAAAATCATTTAAAGTAAGTAAT
313 AATG---AAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAAC
* * * * * ** * * *
1212371 TAAGCTTTCGAAGGCATGAGTGACTATGAATGGATTTTTCTTGTCAAGGGATGGCTTTCATTTTA
375 TAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCA
* * * * * *
1212436 TGTTTCCTAA-GCAAACATCTAATTATGATCTGTTTTAACCAAAAATGAAATAGAATTCAACTTA
440 TG-TTCCAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAATTCAATTTA
*
1212500 AGCTCA
503 AACTCA
* * * ** * *
1212506 TTAT-GAGATTATAAAACCATTTGAGGCAAGTAACTAGCCTTTCAAAAGTATGAGTGAATACAAA
1 TTATAAAG-TTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAA
* * * * * * * *
1212570 TGGACCTTTCTTGTGAATGGATGG-TGTTCACTTCATGTTTTTTAAGGCAAATATTCAATTATGA
65 TAGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGA
* * * * * * * **
1212634 TGTGTTTTAACCTAGAATG-AAAAAAATTCTACTCAAAATCATTTGTAACGCTATACAATGACTT
129 TCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACTT
* * * * * * *
1212698 AAATAGACTAACAAGGCTTTCAAAAGTATAAGTGACTATCAATGGACTTTTCTTGCCAATGGATG
193 AAACAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
*** * * * * * * *** * *
1212763 GCTTTTGTTTCATGTTTCCTGAGGCAAATAGCCAATTACGGTCGGTGTTAACCAAAAATGAAAAG
258 GCTTTCACTTCATGTTTCTTAAGGCAAACA-TCAATTATGATTTATTTTAACTAAAAATGAAAA-
* * * ** *
1212828 AAAA-TCAGCTTAAAATCA-TTAT-ACAATTATAAAA-CATTTAAATCGGGTAACAAGGCTTTCA
321 AAAATTCAACTTAAAATCATTTATGA-GATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCA
* * * * ** * ***
1212889 AAGGCATGAGTGATTATAAATGGAC-TTTCTTCTCAACAGATGGCTTTTGCTTCACGTTTCTTGA
385 AAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-TTCCAAA
* ** * * *
1212953 GGCAAACATTCAATTACAATTTGTTTTAACCT-AAAAT-GAAAAAATTC-ATCTTAAAATCA
449 GGCAAACATCCAATTATGATCTGTTTTAA-CTAAAAATAAAAAAAATTCAAT-TTAAACTCA
* * * ** * * *** * * * *
1213012 TTTATAAGGTTATAAAACAACTTAAAGCAAAT-ACTA-ACGTTTTTGACGACATGAATGACTATA
1 -TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGC-TTTCAAAAG-TATGAGTGAATATA
* * * * * * * * *
1213075 AATGGACTTTTTTTATCTATGGATAGCTTTTGCTTCATGCTTCCCAAGGTAAACATCCAATTATG
63 AATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATG
** * *
1213140 ATCTACTTTAA-CTAAAAATGAAAAAAATTTCAACTTAAAATCATTTATAA-GATTATAAAGA-A
128 ATCTGTTTTAACCT-AAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACG-TTATAAA-ACA
** * * * * *
1213202 A-TTAAAGTGAGTAATTAA-GCTTTCG-AGGCATTG-GTGATTATAAATGGACTTGTCTTATCAA
189 ACTTAAACAGAGTAA-CAAGGCTTTCGAAAGCA-TGAGTGACTATAAATGGACTTTTCTTGTCAA
* * ** * * ** * * *
1213263 TAGATGCCTTTTGCTTTAGGTTTCTCGAGGCAAACATCTAACTATGATCTAATTTAA-TGAAAAA
252 TGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATC-AATTATGATTTATTTTAACT-AAAAA
* * * * ** *
1213327 T-AAAAAAAATTCAATTTAAAATCATTGAT-AAAGTTGA-AAAACCACTTAAAGTGAGTAACAAG
315 TGAAAAAAAATTCAACTTAAAATCATTTATGAGA-TT-ATAAAACCATTTAAAGCAAGTAACTAG
* ** * * * *
1213389 GTTTTTGAAGGCATAAGTGGCTAT--AT--ACTTTTCTTGTCAATGGAT-GTCTTTCACTTCATA
378 GCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAG-CTTTCACTTCAT-
* * * * ** * *
1213449 TTTCTC-AAGGCAGACATCTAATTACGATCTAATTTAGCCAAAAAT-AAAAAAA--C---TT---
441 GTTC-CAAAGGCAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATTCAATTTAAA
1213504 -T-A
505 CTCA
* * * ** * * *
1213506 -TA-AGA-TTATAAAACCATTTAAAGCGAGCAACTAGGCTTTTGAAAGCATAAGTGATTATAAAT
1 TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAAT
* * * *
1213568 -GAACTTTTCTTGTGAATGGATGGCTTTCACTTCATATTTC-CGAAGGCAAACAT-CAATTATAA
66 AG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTC-AAGGCAAACATCCAATTATGA
* * * * * * ** *
1213630 TCTGTTCTAACTTGAAAT-AAAAAAAATTTAATTTAAAATCATTTATAACATAATGCAACGACTT
129 TCTGTTTTAACCTAAAATGAAAAAAAA-TTCATTTAAAATCATTTATAACGTTATAAAACAACTT
* * * * ** * * * * *
1213694 AAATAGACTAACAAAGATTTTAAAAGCAT-AGGTAACTATAAATTGAGTTTTTTTATCAATGGAT
193 AAACAGAGTAACAAGGCTTTCGAAAGCATGA-GTGACTATAAATGGACTTTTCTTGTCAATGGAT
* ** * * * * * *
1213758 GGTTTTTGCTTCATGTTTCCTAATGCAAACATCCAATTTTGCTCTATTTTAACAAAAAATGTAAA
257 GGCTTTCACTTCATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAAAATG-AAA
* ** * * * * * * * * *
1213823 AACAATT-GGCTTAAAATTATTTATGGGATTA-GAAACCATTTATATCGAGTAACAAGGCTATCG
320 AAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCA
* * * * * * * **
1213886 AAGGTATGAGT-ATTTATAAATGGATTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTG
385 AAGGCATGAGTGA-CTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATG-TTCCAA
* * * * * * * * *
1213950 AGGCAAACATCCAATTATGATTTATTTTATCCT-AACATGAAAAAAATTTGAACTTAAAATTA
448 AGGCAAACATCCAATTATGATCTGTTTTA-ACTAAAAAT-AAAAAAAATTCAATTTAAACTCA
* * * ** ** * *
1214012 TT-TATGAGATTATAAGACCATTTAAAGCG-GATAACTAGGCTTTTGATGGCATAAGT-AATTAT
1 TTATA-AAG-TTATAAAACCATTTAAAGTGAG-TAACTAGGCTTTCAAAAGTATGAGTGAA-TAT
* * * * * ** * *
1214074 AAATAGACTTTTTTTATCAATGGATGACCTTCACTTCACACTTTC-CAAGGCAAATATCCATTTA
62 AAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCTCAAGGCAAACATCCAATTA
*** * * * *
1214138 TGATCTGTTTTAGTGTAAAATGAAAAACAAAATCAATTCACAAA-CATTTCTAAGGTTATAAAAC
126 TGATCTGTTTTAACCTAAAATGAAAAA-AAATTC-ATTTA-AAATCATTTATAACGTTATAAAAC
* * ** * * * * * *
1214202 CACGTAATGTA-AGTAATAAGGCTTTC-AAAGGTATGAGTGACTATAAATAGAATTTTTTTATCA
188 AACTTAA-ACAGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** * * * * * **
1214265 ATTGAT-GTTTTGGCTTTCTAT-TTTC-CAAGACAAACATCCAATTACGATCTATTTTCACCGAA
251 ATGGATGGCTTTCAC-TTC-ATGTTTCTTAAGGCAAACAT-CAATTATGATTTATTTTAACTAAA
* ** * * * * ** * **
1214327 AA-CAACAAAGTACTCAACCTAAAATAATTTAGGAGATTATAAAATTATTGAAAGTGAGTAACTA
313 AATGAA-AAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTA
* * * * *** *
1214391 GGCTTTCGAAGGCATGAGTGATTATAAATAGACTTTTCTCATCAGGGGAT-GACTTTTACTTCAT
377 GGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATAG-CTTTCACTTCAT
* * * * * * ** * *
1214455 GTTTTC-GAGACAAACATCTAATTATGATATGCTTTAA-TCAAAAATGAAAAGCAGTTCAACTTA
441 G-TTCCAAAGGCAAACATCCAATTATGATCTGTTTTAACT-AAAAAT-AAAAAAAATTCAATTTA
1214518 AACTCA
503 AACTCA
** ** * * *
1214524 TTTATTAGAA--TATAAAAGTATTTAAAGCAAGTAACTAGGCTTTCGAAAGCATTAGTGAATATA
1 -TTA-TA-AAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATA
* * * * * ** * ** *
1214587 AATAGACTTTTCATGTTAATGCATGGATTTCACTTCATACTTCACGGGGCAAACATCCAATTATA
63 AATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATG
* * * * * **
1214652 ATATGTTTTAACCTAAAAT--AAAAAAATTCAATTGAAAATCATTTTTAATGTTTTAAAATGACT
128 ATCTGTTTTAACCTAAAATGAAAAAAAATTC-ATTTAAAATCATTTATAACGTTATAAAACAACT
* * * *
1214715 TAAATAGACTAACAAGGTTTTC-AAATGTATGAGTGACTATAAATGGA
192 TAAACAGAGTAACAAGGCTTTCGAAA-GCATGAGTGACTATAAATGGA
1214762 TCTTACTTAT
Statistics
Matches: 11657, Mismatches: 3137, Indels: 1701
0.71 0.19 0.10
Matches are distributed among these distances:
487 1 0.00
488 31 0.00
489 38 0.00
490 183 0.02
491 26 0.00
492 15 0.00
493 1 0.00
494 60 0.01
495 3 0.00
496 6 0.00
499 2 0.00
501 2 0.00
502 1 0.00
503 4 0.00
504 62 0.01
505 24 0.00
506 129 0.01
507 583 0.05
508 825 0.07
509 1364 0.12
510 1799 0.15
511 1878 0.16
512 1807 0.16
513 878 0.08
514 796 0.07
515 234 0.02
516 161 0.01
517 42 0.00
518 49 0.00
519 94 0.01
520 1 0.00
522 4 0.00
523 2 0.00
524 5 0.00
525 4 0.00
526 1 0.00
527 3 0.00
528 7 0.00
529 5 0.00
530 7 0.00
531 10 0.00
532 2 0.00
533 3 0.00
534 1 0.00
535 11 0.00
536 11 0.00
537 11 0.00
538 10 0.00
539 6 0.00
540 27 0.00
541 10 0.00
542 7 0.00
543 4 0.00
544 3 0.00
545 2 0.00
546 7 0.00
547 4 0.00
548 21 0.00
549 16 0.00
550 12 0.00
551 6 0.00
552 3 0.00
553 1 0.00
554 3 0.00
555 12 0.00
556 2 0.00
557 2 0.00
558 5 0.00
559 7 0.00
560 7 0.00
561 7 0.00
562 7 0.00
563 5 0.00
564 7 0.00
565 5 0.00
566 3 0.00
567 2 0.00
568 10 0.00
569 3 0.00
570 1 0.00
571 2 0.00
572 3 0.00
573 3 0.00
574 5 0.00
575 12 0.00
576 8 0.00
577 14 0.00
578 14 0.00
579 4 0.00
580 7 0.00
581 9 0.00
582 15 0.00
583 11 0.00
584 2 0.00
585 1 0.00
586 8 0.00
587 6 0.00
588 8 0.00
589 11 0.00
590 12 0.00
591 1 0.00
592 4 0.00
593 1 0.00
594 1 0.00
595 3 0.00
596 7 0.00
597 3 0.00
598 4 0.00
599 7 0.00
600 2 0.00
601 3 0.00
602 1 0.00
604 3 0.00
607 2 0.00
608 1 0.00
609 2 0.00
610 13 0.00
611 3 0.00
612 4 0.00
613 12 0.00
614 7 0.00
615 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (508 bp):
TTATAAAGTTATAAAACCATTTAAAGTGAGTAACTAGGCTTTCAAAAGTATGAGTGAATATAAAT
AGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGGCAAACATCCAATTATGATC
TGTTTTAACCTAAAATGAAAAAAAATTCATTTAAAATCATTTATAACGTTATAAAACAACTTAAA
CAGAGTAACAAGGCTTTCGAAAGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
TTCACTTCATGTTTCTTAAGGCAAACATCAATTATGATTTATTTTAACTAAAAATGAAAAAAAAT
TCAACTTAAAATCATTTATGAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTCAAAGGCA
TGAGTGACTATAAATGGACTTTTCTTATCAATAGATAGCTTTCACTTCATGTTCCAAAGGCAAAC
ATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATTCAATTTAAACTCA
Found at i:1210239 original size:171 final size:171
Alignment explanation
Indices: 1209332--1213500 Score: 1767
Period size: 171 Copynumber: 24.6 Consensus size: 171
1209322 AAACTGAGCC
* * * * * * * * *
1209332 ATAAATGGACTTTTCTT-GTCAAGGGATGACTTTC-GTTCTTTGTTTTCCAAGGCTAACATCTAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTC-ATGTTTTCTAAGACAAACATCCAA
* * * * *
1209395 TTAT-AACCTATTTTAACTAAAAATGAAACAAAATTCAACTTAAACTCA-TTATGAGATTATAAA
65 TTATGAA-CTGTTTTAACCAAAAATGAAA-AAAATTCAACCTAAAATCATTTATAAGATTATAAA
* * * * * * * * *
1209458 ACCATTTGAAGCGAGTAACTATGCTTTCAAAAGTATAAGTGAAT
128 ACCATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * * * *
1209502 ATAAATGGACTTTACTT-GTGAATGGATGGCTTTCACTTCATG-TTTCTTGACACAAACAT-CAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTC-TAAGACAAACATCCAA
* ** * * ** * * * *
1209564 TTACGATTTGTTTTAAACAAAAATTAAAAAAATTCAATTTAAACTCATTTATAACATTATATAAG
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAAC
* * * * * * ** *
1209629 GACT-TAAA---ACTGACAAGG-ATTTCGAAGGCATGAGCAATT
130 CA-TATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
* * * ** * * **
1209668 ATAAATTGACTTTTCTCA-TCAATGGATTGCTTTTGCTTCACGTTTCCCT-AGGGAAACATCCAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTT-TCTAAGACAAACATCCAA
** ** * * ** ** * *
1209731 TTATGATTTGTTTTAATTAAACATGAGAAAAATTTTACCTTAAAATTTTTTATGAGATTATAAGA
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACC-TAAAATCATTTATAAGATTATAAAA
* * * * ** ** *
1209796 CCATTTAAAACGGGCAACTTTGCTTTTA-ATGATATGAGTGATT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGA-GGCATGAGTGACT
** * * * * *
1209839 ATAAATAGA-TTTT-TTTTTCAATGGATGGCCTTCGCTTTAT-ATTTCATAAGGCAAACATCCAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTC-TAAGACAAACATCCAA
* * * * * * *
1209901 TTA-CAATTTGTTTTAACCTAAAATGAGAAAAAAATTCAA-TTCACAATCATTTCTAAGGTTATA
65 TTATGAA-CTGTTTTAACCAAAAAT--GAAAAAAATTCAACCT-AAAATCATTTATAAGATTATA
* * * * * * * * *
1209964 AAACTATTTAATA-C-ATGTACCAAGACTTTCAAAGGCA-CAGGTGGCT
126 AAACCATATAA-AGCGA-GTAACTAGGCTTTTAGAGGCATGA-GTGACT
* ** * * * **
1210010 ATAAATAGAATTTTCTTA-TCAATGGATACCTTTCGCTTTATGTTTTTTAAGGTAAACATCCAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* ** * * * *
1210074 TATAAACCATTTTCATCAAAAATGAAAAAATAATCAACCTAAAATTATTTATAAGATTATAAAAC
66 TATGAACTGTTTTAACCAAAAATGAAAAAA-ATTCAACCTAAAATCATTTATAAGATTATAAAAC
**
1210139 TGTATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
130 CATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * ** *
1210181 ATAAATAGACTTTT-TTAGTCAATGGATGGCTTTCACTTCACGTATCCCGAGATAAACATCCAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
** ** * * * * * *
1210245 TATGATTTACTTTAGCCAAAAATGAAAACAAACTGAGCCTAAAAACATTTATAAGATTATAAAAT
66 TATGAACTGTTTTAACCAAAAATGAAAA-AAATTCAACCTAAAATCATTTATAAGATTATAAAAC
*** * * * *
1210310 CGCCTAAAGCAAGTAATTAAGCTTTTAAAGGCATGAGTGACT
130 CATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * * ** * * * *
1210352 ATAAATGGACTTTTCTT-GTCAAGGGATGACTTTCATTTTTTGTTTTCCAAGGCTAACATCTAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* * * * *
1210416 TAT-AACCTATTTTAA-CTAAAATGAAACAAAATTCAACTTAAACTCA-TTATGAGATTATAAAA
66 TATGAA-CTGTTTTAACCAAAAATGAAA-AAAATTCAACCTAAAATCATTTATAAGATTATAAAA
* * * * * * * * *
1210478 CCATTTAAAGCTAGTAACCAGGCTTTCAAAAGTATAAGTGAAT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * * *
1210521 ATAAATGGACTATACTTA-TGAATGGATGGCTTTCACTTCATG-TTTCT-TGATGCAAACAT-CA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGA--CAAACATCCA
* * * * * * *
1210582 ATTATGATCTGTTTTAAACTAAAATGAAAAAAATTCAATCTAAACTCATTTATAACATTATACAA
64 ATTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAA
* *** * * ** *
1210647 CGACT-TAAATAAACTAACAAGAATTTT-GAAGGCATGAGTAACT
129 CCA-TATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
* * * ** * *
1210690 ATAAATTGAC-TTTCTCA-TCAATGGATAGCTTTTTCTTCATGTTTTCCT-AGGCAAACATACAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTT-CTAAGACAAACATCCAA
** *** * * * * ** * *
1210752 TTATGATTTGTTTTATTTAAACATGCGAAAAATTTCAACTTAAAATTTTTTATGAGATTATAAGA
65 TTATGAACTGTTTTAACCAAAAATG-AAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAA
* * * * *
1210817 CCATTTAAAGTGGGTAACTAGGCTTTT-GATGACATGAGTGATT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGA-GGCATGAGTGACT
** * * * * **
1210860 ATAAATAGA-TTTT-TTTTTCAGTGGATGGCCTTT-GCTTTA-GATTTCCTAAGGTAAACATCCA
1 ATAAATAGACTTTTCTTAGTCAATGGATGG-CTTTCACTTCATG-TTTTCTAAGACAAACATCCA
* * * * * * *
1210921 ATTATGATCTGTTTTAACCTAAAATAAAAAACAATTCAA-TTCACAATCATTTCTAAGGTTATAA
64 ATTATGAACTGTTTTAACCAAAAATGAAAAA-AATTCAACCT-AAAATCATTTATAAGATTATAA
* * * * * * * *
1210985 AACTATGTAATA-CAAGTATCAAGACTTTTAAAGGCATGAGTGGCT
127 AACCATATAA-AGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * ** ** * * ** *
1211030 ATAAATAGAATTTTCTTA-TGAATGGATACCTTTTGCTTTATGTTTT-TCATGGTAAACATCTAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCT-AAGACAAACATCCAA
* ** * * * * * *
1211093 TTATAAACCATTTTCACCAAAGATGAAAACATACTCAACCTAAAATTATTTACAAGATTATAAAA
65 TTATGAACTGTTTTAACCAAAAATGAAAA-AAATTCAACCTAAAATCATTTATAAGATTATAAAA
** * **
1211158 CTGTATAAACCGAGTAACTAGGCTTTCGGAGGCATGAGTGACT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * *
1211201 ATAAATAGACTTTTCTAAAT-AATGGATGGCTTTCACTTCATG-TTTCTCAAGGA-AAACATTCA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCT-AA-GACAAACATCCA
* * * *
1211263 ATTAT-AA-TTTTCATTAACAAAAAATAAAAAATAACTCAACCTAAAATCATTTATAAGATTATA
64 ATTATGAACTGTT--TTAACCAAAAATGAAAAA-AATTCAACCTAAAATCATTTATAAGATTATA
*** * * *
1211326 AAATTGTGTAAAGCAAGTAATTAGGCTTTT-GAAGGCATGAGTGACT
126 AAACCATATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
* * * ** * ** * *
1211372 ACAAGT-GAACTTTTCTT-GTCAAGGGATGGCTTTCGTTTTACATTTTCTAAGGCAAACATCTAA
1 ATAAATAG-ACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAA
* ** * *
1211435 TTATGATA-T-TTTTAGCCAAAAATGAAACAAAATTCAATTTAAACTCA-TTATGAGATTATAAA
65 TTATGA-ACTGTTTTAACCAAAAATGAAA-AAAATTCAACCTAAAATCATTTATAAGATTATAAA
* * * * * * * * *
1211497 ACCATTTAAAGTGAGTAAGTAGCCTTTCAAAAGTATGAGTGAAT
128 ACCATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * ** * *
1211541 ATAAATGGACTTTTCTT-GTGAATGGATAACTTTCACTTCATG-TTTCTTGAGGCAAACAT-CAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTC-TAAGACAAACATCCAA
** * ** * *
1211603 TTATGATTTGTTTTAACCTAAAATGAAAAAAATTCAATTTAAAATCATTTATAACATTATACAAC
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAAC
* * * * * *
1211668 GACT-TAAATAC-ACTAACAAGGTTTTTAAAGGCATGAGTGACT
130 CA-TATAAA-GCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
** * ** *
1211710 ATAAATTTACTTTTTTTA-TCAATGGATGGCTTTTGCTTCATGTTTTCTAAGACAAACATCTAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* * * * * * *
1211774 TATGATA-TGTTTTAACCAAACATGAAGAAAATTTCAGCGTAAAAT-TTTTAATGAGATTATAAG
66 TATGA-ACTGTTTTAACCAAAAATGAA-AAAAATTCAACCTAAAATCATTT-ATAAGATTATAAA
* * * * * *
1211837 ACCATCTAAAG-TATGTAATTAGGCTTTT-GATTGCATGAATGATT
128 ACCATATAAAGCGA-GTAACTAGGCTTTTAGA-GGCATGAGTGACT
* ** * *
1211881 ATAAATAGACTTTTCTT-GTCAATGGATGGCCTTCACTTCAAATTTTCTGAGACAAACATCTAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* * * * * * * *
1211945 TAT-AATATGTTTTAACCTAAAATTAAAAAAATTCAA-TTCACAATCATTTCTAAGGTTATAAAG
66 TATGAA-CTGTTTTAACCAAAAATGAAAAAAATTCAACCT-AAAATCATTTATAAGATTATAAAA
* * * *
1212008 CCACATAATA-CTAGT-ACTAAGGCTTTCAAAGGCATGAGTGACT
129 CCATATAA-AGCGAGTAACT-AGGCTTTTAGAGGCATGAGTGACT
* * * * * *
1212051 ATAAATAGA-TATTTCTTA-TCAATGAATGACTTTCACTTCATGTTTTTTGAGATACACATCCAA
1 ATAAATAGACT-TTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAA
* * * *
1212114 TTATGAACTGTTTTCACCAAAAATG-AAAAAATACAAAACCTAAAATCATTTTTATGATTATAAA
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTC--AACCTAAAATCATTTATAAGATTATAAA
* * * * *
1212178 ACCGTATAGAGTGAGTAACTAGGC-TTTCGAAGGCATGAGTAACT
128 ACCATATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
** ** * *
1212222 ATAAAT-GAACTTTT-TT-GATCAATGGATGGCTTTTGCTTCA-CATTTCTTGAGGCAAACATCC
1 ATAAATAG-ACTTTTCTTAG-TCAATGGATGGCTTTCACTTCATGTTTTC-TAAGACAAACATCC
* * ** * * * *
1212283 AATTATG-ATTTTCTTTAATAAAAAATGAAAAAAAAAAACTCTACTTAAAATCATTTATAAGATC
63 AATTATGAACTGT-TTTAACCAAAAATG----AAAAAAATTCAACCTAAAATCATTTATAAGATT
* * ** * * *
1212347 ATAAAATCATTTAAAGTAAGTAATTAAGC-TTTCGAAGGCATGAGTGACT
123 ATAAAACCATATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
* * * * * * * *
1212396 ATGAATGGATTTTTCTT-GTCAAGGGATGGCTTTCATTTTATGTTTCCTAAG-CAAACATCTAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* * * ** *
1212459 TATGATCTGTTTTAACCAAAAATGAAATAGAATTCAACTTAAGCTCA-TTATGAGATTATAAAAC
66 TATGAACTGTTTTAACCAAAAATGAAA-AAAATTCAACCTAAAATCATTTATAAGATTATAAAAC
* * * * * * * * * *
1212523 CATTTGAGGCAAGTAACTAGCCTTTCAAAAGTATGAGTGAAT
130 CATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * * * * * *
1212565 ACAAATGGACCTTTCTT-GTGAATGGATGG-TGTTCACTTCATGTTTTTTAAGGCAAATATTCAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCT-TTCACTTCATGTTTTCTAAGACAAACATCCAA
** * * * * * *
1212628 TTATGATGTGTTTTAACCTAGAATGAAAAAAATTCTA-CTCAAAATCATTTGTAACG-CTATACA
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCT-AAAATCATTTATAA-GATTATAAA
** ** * * * * * * *
1212691 ATGACT-TAAATAGACTAACAAGGCTTTCAAAAGTATAAGTGACT
128 ACCA-TATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * * *** * * * * *
1212735 ATCAATGGACTTTTCTT-GCCAATGGATGGCTTTTGTTTCATGTTTCCTGAGGCAAATAGCCAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* ** * * * * *
1212799 TACGGTCGGTGTTAACCAAAAATGAAAAGAAAATCAGCTTAAAATCA-TTATACA-ATTATAAAA
66 TATGAACTGTTTTAACCAAAAATGAAAA-AAATTCAACCTAAAATCATTTATA-AGATTATAAAA
* * * * * * *
1212862 -CATTTAAATCGGGTAACAAGGCTTTCAAAGGCATGAGTGATT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
* * ** ** * * * *
1212904 ATAAATGGAC-TTTCTT-CTCAACAGATGGCTTTTGCTTCACG-TTTCTTGAGGCAAACATTCAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTC-TAAGACAAACATCCAA
* * * * * *
1212966 TTA-CAATTTGTTTTAACCTAAAATG-AAAAAATTCATCTTAAAATCATTTATAAGGTTATAAAA
65 TTATGAA-CTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAA
* * * * * * *
1213029 CAACT-TAAAGCAAAT-ACTA-ACGTTTTTGACGACATGAATGACT
129 CCA-TATAAAGCGAGTAACTAGGC-TTTTAGA-GGCATGAGTGACT
* * * * ** * * * **
1213072 ATAAATGGACTTTTTTTA-TCTATGGATAGCTTTTGCTTCATGCTTCCCAAGGTAAACATCCAAT
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
* ** * *
1213136 TATGATCTACTTTAACTAAAAATGAAAAAAATTTCAACTTAAAATCATTTATAAGATTATAAAGA
66 TATGAACTGTTTTAACCAAAAATGAAAAAAA-TTCAACCTAAAATCATTTATAAGATTATAAA-A
* * * * * *
1213201 -AAT-TAAAGTGAGTAATTAAGC-TTTCGAGGCATTG-GTGATT
129 CCATATAAAGCGAGTAACTAGGCTTTTAGAGGCA-TGAGTGACT
* * * * ** * * * * *
1213241 ATAAATGGACTTGTCTTA-TCAATAGATGCCTTTTGCTTTA-GGTTTCTCGAGGCAAACATCTAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCT-AAGACAAACATCCAA
* * ** ** * ** *
1213304 CTATGATCTAATTTAATGAAAAATAAAAAAAATTCAATTTAAAATCATTGATAA-AGTTGA-AAA
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGA-TT-ATAAA
* * * * *
1213367 ACCACT-TAAAGTGAGTAACAAGG-TTTTTGAAGGCATAAGTGGCT
128 ACCA-TATAAAGCGAGTAACTAGGCTTTTAG-AGGCATGAGTGACT
* * * * *
1213411 AT--AT--ACTTTTCTT-GTCAATGGATGTCTTTCACTTCAT-ATTTCTCAAGGCAGACATCTAA
1 ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCT-AAGACAAACATCCAA
* * ** *
1213470 TTACGATCTAATTTAGCCAAAAAT-AAAAAAA
65 TTATGAACTGTTTTAACCAAAAATGAAAAAAA
1213501 CTTTATAAGA
Statistics
Matches: 3016, Mismatches: 803, Indels: 365
0.72 0.19 0.09
Matches are distributed among these distances:
165 9 0.00
166 135 0.04
167 64 0.02
168 257 0.09
169 714 0.24
170 715 0.24
171 883 0.29
172 98 0.03
173 36 0.01
174 91 0.03
175 7 0.00
176 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (171 bp):
ATAAATAGACTTTTCTTAGTCAATGGATGGCTTTCACTTCATGTTTTCTAAGACAAACATCCAAT
TATGAACTGTTTTAACCAAAAATGAAAAAAATTCAACCTAAAATCATTTATAAGATTATAAAACC
ATATAAAGCGAGTAACTAGGCTTTTAGAGGCATGAGTGACT
Found at i:1211179 original size:341 final size:342
Alignment explanation
Indices: 1209332--1214026 Score: 1987
Period size: 341 Copynumber: 13.9 Consensus size: 342
1209322 AAACTGAGCC
* * * * * *
1209332 ATAAATGGACTTTTCTTGTCAAGGGAT-GACTTTCG-TTCTTTGTTTTCCAAGGCT-AACATCTA
1 ATAAATAGAATTTTCTTATCAATGGATAG-CTTTCGCTT-TATGTTTTTCAAGG-TAAACATCTA
* * * * * * *
1209394 ATTATAACCTATTTTAACTAAAAATGAAACAAA-ATTCAACTTAAACTCA-TTATGAGATTATAA
63 ATTATAAACTATTTTCACCAAAAATGAAA-AAATATTCAACCTAAAATTATTTATAAGATTATAA
* * * * * * * * * ** *
1209457 AACCATTTGAAGCGAGTAACTATGC-TTTCAAAAGTATAAGTGAATATAAATGGACTTTACTTGT
127 AACCATATAAAGCGAGTAACTAGGCTTTTGAAGA-CATGAGTGACTATAAATAGACTTTTTTTAT
* * ** * * * *
1209521 GAATGGATGG-CTTTCACTTCATGTTTCTTGACACAAACAT-CATTTACGATTTGTTTTAAACAA
191 CAATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTA
* * * * * ** * *
1209584 AAATTAAAAAAATTCAATTTAAACTCATTTATAACATTATATAAGGACT-TAAAAC-TG-A-CAA
256 AAATAAAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTA-TGTAATACAAGTATCAA
** ** *
1209645 GGA-TTTCGAAGGCATGAGCAATT
320 -GACTTTTAAAGGCATGAGTGACT
* * * * * * * ** * * *
1209668 ATAAATTGACTTTTCTCATCAATGGATTGCTTTTGCTTCACGTTTCCCTAGGGAAACATCCAATT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACATCTAATT
* ** * * ** * * * * *
1209733 ATGATTTGTTTTAATTAAACATGAGAAAAAT-TT-TACCTTAAAATTTTTTATGAGATTATAAGA
66 ATAAACTATTTTCACCAAAAATGA-AAAAATATTCAACC-TAAAATTATTTATAAGATTATAAAA
* * * * ** * * *
1209796 CCATTTAAAACGGGCAACTTTGCTTTT-AATGATATGAGTGATTATAAATAGA-TTTTTTTTTCA
129 CCATATAAAGCGAGTAACTAGGCTTTTGAA-GACATGAGTGACTATAAATAGACTTTTTTTATCA
* * * * * **
1209859 ATGGATGGCC-TTCGCTTTATATTTCATAAGGCAAACATCCAATTACAATTTGTTTTAACCTAAA
193 ATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAA
* * * * * *
1209923 ATGAGAAAAAAATTCAATTCACAATCATTTCTAAGGTTATAAAACTATTTAATACATGTACCAAG
258 AT-A-AAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTATGTAATACAAGTATCAAG
* * *
1209988 ACTTTCAAAGGCA-CAGGTGGCT
321 ACTTTTAAAGGCATGA-GTGACT
* * *
1210010 ATAAATAGAATTTTCTTATCAATGGATACCTTTCGCTTTATGTTTTTTAAGGTAAACATCCAATT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACATCTAATT
* * * *
1210075 ATAAACCATTTTCATCAAAAATGAAAAAATAATCAACCTAAAATTATTTATAAGATTATAAAACT
66 ATAAACTATTTTCACCAAAAATGAAAAAATATTCAACCTAAAATTATTTATAAGATTATAAAACC
* *
1210140 GTATAAAGCGAGTAACTAGGCTTTT-AGAGGCATGAGTGACTATAAATAGAC-TTTTTTAGTCAA
131 ATATAAAGCGAGTAACTAGGCTTTTGA-AGACATGAGTGACTATAAATAGACTTTTTTTA-TCAA
* * * ** ** * *
1210203 TGGATGG-CTTTCACTTCACGTATCCCGAGATAAACATCCAATTATGATTTACTTTAGCCAAAAA
194 TGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAAA
* * * ** * * *
1210267 TGAAAACAAACT-GAGCCTAAAAACATTTATAAGATTATAAAA-T-CGCCTAA-AGCAAGTAATT
259 T-AAAAAAAATTCAATTC-AAAATCATTTATAAGATTATAAAACTATG--TAATA-CAAGT-ATC
1210328 AAG-CTTTTAAAGGCATGAGTGACT
318 AAGACTTTTAAAGGCATGAGTGACT
* * * * ** * *
1210352 ATAAATGGACTTTTCTTGTCAAGGGAT-GACTTTCATTTTTTGTTTTCCAAGGCT-AACATCTAA
1 ATAAATAGAATTTTCTTATCAATGGATAG-CTTTCGCTTTATGTTTTTCAAGG-TAAACATCTAA
* * * * * * *
1210415 TTATAACCTATTTT-AACTAAAATGAAACAAA-ATTCAACTTAAACTCA-TTATGAGATTATAAA
64 TTATAAACTATTTTCACCAAAAATGAAA-AAATATTCAACCTAAAATTATTTATAAGATTATAAA
* * * * * * * * * * ** *
1210477 ACCATTTAAAGCTAGTAACCAGGC-TTTCAAAAGTATAAGTGAATATAAATGGACTATACTTATG
128 ACCATATAAAGCGAGTAACTAGGCTTTTGAAGA-CATGAGTGACTATAAATAGACTTTTTTTATC
* * * *
1210541 AATGGATGG-CTTTCACTTCATGTTTCTTGATGCAAACAT-CAATTATGATCTGTTTTAAACTAA
192 AATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* * * * * * *
1210604 AATGAAAAAAATTCAA-TCTAAACTCATTTATAACATTATACAACGACT-TAAATA-AACTAACA
257 AATAAAAAAAATTCAATTC-AAAATCATTTATAAGATTATAAAACTA-TGT-AATACAAGTATCA
* * *
1210666 AGAATTTTGAAGGCATGAGTAACT
319 AGACTTTTAAAGGCATGAGTGACT
* * * ** * * * *
1210690 ATAAATTG-ACTTTCTCATCAATGGATAGCTTTTTCTTCATGTTTTCCTAGGCAAACATAC-AAT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACAT-CTAAT
* ** * ** * * * * * *
1210753 TATGATTTGTTTT-ATTTAAACATGCGAAAAAT-TTCAACTTAAAATTTTTTATGAGATTATAAG
65 TATAAACTATTTTCA-CCAAAAATG-AAAAAATATTCAACCTAAAATTATTTATAAGATTATAAA
* * * * * *
1210816 ACCATTTAAAGTGGGTAACTAGGCTTTTGATGACATGAGTGATTATAAATAGA-TTTTTTTTTCA
128 ACCATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGACTATAAATAGACTTTTTTTATCA
* * * * * *
1210880 GTGGATGGCCTTT-GCTTTA-GATTTCCTAAGGTAAACATCCAATTATGATCTGTTTTAACCTAA
193 ATGGATGGCCTTTCACTTCATG-TTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* * *
1210943 AATAAAAAACAATTCAATTCACAATCATTTCTAAGGTTATAAAACTATGTAATACAAGTATCAAG
257 AATAAAAAA-AATTCAATTCAAAATCATTTATAAGATTATAAAACTATGTAATACAAGTATCAAG
*
1211008 ACTTTTAAAGGCATGAGTGGCT
321 ACTTTTAAAGGCATGAGTGACT
* * * *
1211030 ATAAATAGAATTTTCTTATGAATGGATACCTTTTGCTTTATGTTTTTCATGGTAAACATCTAATT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACATCTAATT
* * * * * *
1211095 ATAAACCATTTTCACCAAAGATGAAAACATACTCAACCTAAAATTATTTACAAGATTATAAAACT
66 ATAAACTATTTTCACCAAAAATGAAAAAATATTCAACCTAAAATTATTTATAAGATTATAAAACC
* * * * * **
1211160 GTATAAACCGAGTAACTAGGCTTTCGGAGGCATGAGTGACTATAAATAGACTTTTCTAAAT-AAT
131 ATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGACTATAAATAGACTTTT-TTTATCAAT
* * * * * **
1211224 GGATGG-CTTTCACTTCATGTTT-CTCAAGGAAAACATTCAATTATAATTT-TCATTAACAAAAA
195 GGATGGCCTTTCACTTCATGTTTCCT-GAGGCAAACATCCAATTATGATTTGT-TTTAACCTAAA
* * * * *
1211286 ATAAAAAATAACTCAA-CCTAAAATCATTTATAAGATTATAAAATTGTGTAA-AGCAAGTAAT-T
258 ATAAAAAA-AATTCAATTC-AAAATCATTTATAAGATTATAAAACTATGTAATA-CAAGT-ATCA
* *
1211348 AGGCTTTTGAAGGCATGAGTGACT
319 AGACTTTTAAAGGCATGAGTGACT
* * * * * * ** *
1211372 ACAAGT-GAACTTTTCTTGTCAAGGGATGGCTTTCGTTTTA-CATTTTCTAAGGCAAACATCTAA
1 ATAAATAGAA-TTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTC-AAGGTAAACATCTAA
* * ** * * *
1211435 TTAT-GA-TATTTTTAGCCAAAAATGAAACAAA-ATTCAATTTAAACTCA-TTATGAGATTATAA
64 TTATAAACTATTTTCA-CCAAAAATGAAA-AAATATTCAACCTAAAATTATTTATAAGATTATAA
* * * * * * * * * * *
1211496 AACCATTTAAAGTGAGTAAGTA-GCCTTTCAAAAGTATGAGTGAATATAAATGGACTTTTCTTGT
127 AACCATATAAAGCGAGTAACTAGGCTTTTGAAGA-CATGAGTGACTATAAATAGACTTTTTTTAT
* ** *
1211560 GAATGGAT-AACTTTCACTTCATGTTTCTTGAGGCAAACAT-CAATTATGATTTGTTTTAACCTA
191 CAATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTA
* * * * * * *
1211623 AAATGAAAAAAATTCAATTTAAAATCATTTATAACATTATACAACGACT-TAAATAC-ACTAACA
256 AAATAAAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTA-TGT-AATACAAGTATCA
**
1211686 AGGTTTTTAAAGGCATGAGTGACT
319 AGACTTTTAAAGGCATGAGTGACT
** * * * * * **
1211710 ATAAATTTACTTTTTTTATCAATGGATGGCTTTTGCTTCATG-TTTTCTAAGACAAACATCTAAT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTC-AAGGTAAACATCTAAT
* * * * * * *
1211774 TATGATA-TGTTTTAACCAAACATGAAGAAAAT-TTCAGCGTAAAATT-TTTAATGAGATTATAA
65 TAT-AAACTATTTTCACCAAAAATGAA-AAAATATTCAACCTAAAATTATTT-ATAAGATTATAA
* * * * * * * * *
1211836 GACCATCTAAAG-TATGTAATTAGGCTTTTGATTG-CATGAATGATTATAAATAGACTTTTCTTG
127 AACCATATAAAGCGA-GTAACTAGGCTTTTGA-AGACATGAGTGACTATAAATAGACTTTTTTTA
** * * * * *
1211899 TCAATGGATGGCC-TTCACTTCAAATTTTCTGAGACAAACATCTAATTATAATATGTTTTAACCT
190 TCAATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCT
* * * * * * ** *
1211963 AAAATTAAAAAAATTCAATTCACAATCATTTCTAAGGTTATAAAGCCACATAATACTAGTA-CTA
255 AAAATAAAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTATGTAATACAAGTATC-A
* *
1212027 AGGCTTTCAAAGGCATGAGTGACT
319 AGACTTTTAAAGGCATGAGTGACT
* * * ** * * *
1212051 ATAAATAG-ATATTTCTTATCAATGAAT-GACTTTCACTTCATGTTTTTTGAGATACACATCCAA
1 ATAAATAGAAT-TTTCTTATCAATGGATAG-CTTTCGCTTTATGTTTTTCAAGGTAAACATCTAA
* * *** * * *
1212114 TTATGAACTGTTTTCACCAAAAATGAAAAAATACAAAACCTAAAATCATTTTTATGATTATAAAA
64 TTATAAACTATTTTCACCAAAAATGAAAAAATATTCAACCTAAAATTATTTATAAGATTATAAAA
* * * * * * *
1212179 CCGTATAGAGTGAGTAACTAGGCTTTCGAAGGCATGAGTAACTATAAAT-GAACTTTTTTGATCA
129 CCATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGACTATAAATAG-ACTTTTTTTATCA
** ** * ***
1212243 ATGGATGG-CTTTTGCTTCACATTTCTTGAGGCAAACATCCAATTATGATTT-TCTTTAATAAAA
193 ATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGT-TTTAACCTAA
* * * * *
1212306 AATGAAAAAAAAAAACTCTACTT-AAAATCATTTATAAGATCATAAAA-TCATTTAA-AGTAAGT
257 AAT----AAAAAAAATTC-AATTCAAAATCATTTATAAGATTATAAAACT-ATGTAATA-CAAGT
* **
1212368 AATTAAG-CTTTCGAAGGCATGAGTGACT
315 -ATCAAGACTTTTAAAGGCATGAGTGACT
* * * * * * ** * *
1212396 ATGAATGGATTTTTCTTGTCAAGGGATGGCTTTCATTTTATG-TTTCCTAA-GCAAACATCTAAT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTC-AAGGTAAACATCTAAT
* * * * * * ** * *
1212459 TATGATCTGTTTTAACCAAAAATGAAATAGA-ATTCAACTTAAGCTCA-TTATGAGATTATAAAA
65 TATAAACTATTTTCACCAAAAATGAAA-AAATATTCAACCTAAAATTATTTATAAGATTATAAAA
* * * * * * * * * * * * * * *
1212522 CCATTTGAGGCAAGTAACTA-GCCTTTCAAAAGTATGAGTGAATACAAATGGACCTTTCTTGTGA
129 CCATATAAAGCGAGTAACTAGGCTTTTGAAGA-CATGAGTGACTATAAATAGACTTTTTTTATCA
** * * * * *
1212586 ATGGATGG--TGTTCACTTCATGTTTTTTAAGGCAAATATTCAATTATGATGTGTTTTAACCTAG
193 ATGGATGGCCT-TTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* * * * * * * * *
1212649 AATGAAAAAAATTCTACTCAAAATCATTTGTAACG-CTATACAATGACT-T-AAATA-GACTAAC
257 AATAAAAAAAATTCAATTCAAAATCATTTATAA-GATTATA-AA--ACTATGTAATACAAGTATC
* * * * *
1212710 AAGGCTTTCAAAAGTATAAGTGACT
318 AAGACTTTTAAAGGCATGAGTGACT
* * * ** * * * * * * * *
1212735 ATCAATGGACTTTTCTTGCCAATGGATGGCTTTTG-TTTCATG-TTTCCTGAGGCAAATAGCCAA
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTT-ATGTTTTTC-AAGGTAAACATCTAA
**** ** * * * * * *
1212798 TTACGGTCGGTGTTAACCAAAAATGAAAAGAA-AATCAGCTTAAAATCA-TTATACA-ATTATAA
64 TTATAAACTATTTTCACCAAAAATGAAAA-AATATTCAACCTAAAATTATTTATA-AGATTATAA
* * * * ** * * * * *
1212860 AA-CATTTAAATCGGGTAACAAGGCTTTCAAAGGCATGAGTGATTATAAATGGAC-TTTCTTCTC
127 AACCATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGACTATAAATAGACTTTTTTTATC
** ** * * * **
1212923 AACAGATGG-CTTTTGCTTCACGTTTCTTGAGGCAAACATTCAATTACAATTTGTTTTAACCTAA
192 AATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* * * * *
1212987 AAT-GAAAAAATTC-ATCTTAAAATCATTTATAAGGTTATAAAACAACT-TAA-AGCAAATA-CT
257 AATAAAAAAAATTCAAT-TCAAAATCATTTATAAGATTATAAAACTA-TGTAATA-CAAGTATC-
* * * * *
1213047 AACG-TTTTTGACGACATGAATGACT
318 AA-GACTTTTAAAGGCATGAGTGACT
* * * * * * * ** *
1213072 ATAAATGGACTTTTTTTATCTATGGATAGCTTTTGCTTCATGCTTCCCAAGGTAAACATCCAATT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACATCTAATT
* * * * * * *
1213137 ATGATCTACTTTAACTAAAAATGAAAAAA-ATTTCAACTTAAAATCATTTATAAGATTATAAAGA
66 ATAAACTATTTTCACCAAAAATGAAAAAATA-TTCAACCTAAAATTATTTATAAGATTATAAA-A
* * * * * * * * * *
1213201 -AAT-TAAAGTGAGTAATTAAGCTTTCG-AGGCATTG-GTGATTATAAATGGACTTGTCTTATCA
129 CCATATAAAGCGAGTAACTAGGCTTTTGAAGACA-TGAGTGACTATAAATAGACTTTTTTTATCA
* ** * * * * * ** ***
1213262 ATAGAT-GCCTTTTGCTTTAGGTTT-CTCGAGGCAAACATCTAACTATGATCTAATTTAATGAAA
193 ATGGATGGCCTTTCACTTCATGTTTCCT-GAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* * * ** *
1213325 AATAAAAAAAATTCAATTTAAAATCATTGATAA-AGTTGA-AAAACCACT-TAA-AGTGAGTAAC
257 AATAAAAAAAATTCAATTCAAAATCATTTATAAGA-TT-ATAAAACTA-TGTAATA-CAAGTATC
** * * *
1213386 AAGGTTTTTGAAGGCATAAGTGGCT
318 AAGACTTTTAAAGGCATGAGTGACT
* * * * * * * *
1213411 AT--AT--ACTTTTCTTGTCAATGGAT-GTCTTTCACTTCATATTTCTCAAGGCAGACATCTAAT
1 ATAAATAGAATTTTCTTATCAATGGATAG-CTTTCGCTTTATGTTTTTCAAGGTAAACATCTAAT
** * *
1213471 TACGATCTAATTT-AGCCAAAAAT---AAAA-A---AA-C--------TTTATAAGATTATAAAA
65 TATAAACTATTTTCA-CCAAAAATGAAAAAATATTCAACCTAAAATTATTTATAAGATTATAAAA
* * * * * * *
1213519 CCATTTAAAGCGAGCAACTAGGCTTTTGAA-AGCATAAGTGATTATAAAT-GAACTTTTCTTGTG
129 CCATATAAAGCGAGTAACTAGGCTTTTGAAGA-CATGAGTGACTATAAATAG-ACTTTTTTTATC
* * * * * *
1213582 AATGGATGG-CTTTCACTTCATATTTCC-GAAGGCAAACAT-CAATTATAATCTGTTCTAACTTG
192 AATGGATGGCCTTTCACTTCATGTTTCCTG-AGGCAAACATCCAATTATGATTTGTTTTAACCTA
* * * * ** * * * *
1213644 AAATAAAAAAAATTTAATTTAAAATCATTTATAACATAATGCAACGACT-TAAATA-GACTAACA
256 AAATAAAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTA-TGT-AATACAAGTATC-
* *
1213707 AAGA-TTTTAAAAGCAT-AGGTAACT
318 AAGACTTTTAAAGGCATGA-GTGACT
* * * * * * * * * * *
1213731 ATAAATTGAGTTTTTTTATCAATGGATGGTTTTTGCTTCATG-TTTCCTAATGCAAACATCCAAT
1 ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTC-AAGGTAAACATCTAAT
* *** * * ** * ** *
1213795 TTTGCTCTATTTTAACAAAAAATGTAAAAACA-ATT-GGCTTAAAATTATTTATGGGATTA-GAA
65 TATAAACTATTTTCACCAAAAATG-AAAAA-ATATTCAACCTAAAATTATTTATAAGATTATAAA
* * * * * * ** * * *
1213857 ACCATTTATATCGAGTAACAAGGCTATCGAAGGTATGAGT-ATTTATAAATGGA-TTTTTCTTCT
128 ACCATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGA-CTATAAATAGACTTTTT-TTAT
* * *
1213920 CAATGGATGG-CTTTCGCTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTATTTTATCCTA
191 CAATGGATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTA
* * * * *
1213984 ACATGAAAAAAATTTGAACTT-AAAATTATTTATGAGATTATAA
256 AAAT-AAAAAAAATTCAA-TTCAAAATCATTTATAAGATTATAA
1214027 GACCATTTAA
Statistics
Matches: 3317, Mismatches: 826, Indels: 427
0.73 0.18 0.09
Matches are distributed among these distances:
318 1 0.00
319 20 0.01
320 96 0.03
321 57 0.02
322 5 0.00
323 3 0.00
324 54 0.02
325 2 0.00
328 5 0.00
329 2 0.00
332 5 0.00
334 4 0.00
335 64 0.02
336 122 0.04
337 283 0.09
338 387 0.12
339 480 0.14
340 464 0.14
341 506 0.15
342 445 0.13
343 165 0.05
344 50 0.02
345 88 0.03
346 9 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (342 bp):
ATAAATAGAATTTTCTTATCAATGGATAGCTTTCGCTTTATGTTTTTCAAGGTAAACATCTAATT
ATAAACTATTTTCACCAAAAATGAAAAAATATTCAACCTAAAATTATTTATAAGATTATAAAACC
ATATAAAGCGAGTAACTAGGCTTTTGAAGACATGAGTGACTATAAATAGACTTTTTTTATCAATG
GATGGCCTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAAATA
AAAAAAATTCAATTCAAAATCATTTATAAGATTATAAAACTATGTAATACAAGTATCAAGACTTT
TAAAGGCATGAGTGACT
Found at i:1212777 original size:170 final size:168
Alignment explanation
Indices: 1211520--1213017 Score: 486
Period size: 170 Copynumber: 8.8 Consensus size: 168
1211510 AGTAAGTAGC
* ** ** **
1211520 CTTTCAAAAGTATGAGTGAATATAAATGGACTTTTCTTGTGAATGGATAACTTTCACTTCATGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGAC-TTTCTTGCCAATGGATGGCTTTTGCTTCATGTT
* * * **
1211585 TCTTGAGGCAAACA-TCAATTATGATTTGTTTTAACCTAAAATGAAAAAAATTCAATTTAAAATC
65 TCTTGAGGCAAATATTCAATTACGATGTGTTTTAACCTAAAATGAAAAAAATTCAGCTTAAAATC
* * *
1211649 ATTTATA-ACATTATACAACGACTTAAATACACTAACAAGG
130 ATTTATACA-ACTATAAAAC-ACTTAAATAGACTAACAAGG
* * * * * * ** * **
1211689 TTTTTAAAGGCATGAGTGACTATAAATTTACTTTTTTTATCAATGGATGGCTTTTGCTTCATGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGAC-TTTCTTGCCAATGGATGGCTTTTGCTTCATGTT
* * * * * * *
1211754 T-TCTAAGACAAACA-TCTAATTATGATATGTTTTAACC-AAACATGAAGAAAATTTCAGCGTAA
65 TCT-TGAGGCAAATATTC-AATTACGATGTGTTTTAACCTAAA-ATGAA-AAAAATTCAGCTTAA
* * * * **
1211816 AAT-TTTTAATGA-GATTATAAGAC-CATCTAAAGTATG--TAATTAGG
126 AATCATTT-AT-ACAACTATAAAACAC-T-TAAA-TA-GACTAACAAGG
** ** * * * * * * * **
1211860 CTTTTGATTGCATGAATGATTATAAATAGACTTTTCTTGTCAATGGATGGCCTTCACTTCAAAT-
1 CTTTCAAAAGTATGAGTGAATATCAATGGAC-TTTCTTGCCAATGGATGGCTTTTGCTTC--ATG
* * ** * * * *
1211924 TTTC-TGAGACAAACA-TCTAATTATAATATGTTTTAACCTAAAATTAAAAAAATTCA-ATTCAC
63 TTTCTTGAGGCAAATATTC-AATTACGATGTGTTTTAACCTAAAATGAAAAAAATTCAGCTT-AA
* ** * *
1211986 AATCATTTCTA-AGGTTATAAAGCCACAT-AAT--ACTAGTACTAAGG
126 AATCATTTATACA-ACTATAAA-ACACTTAAATAGACTA--AC-AAGG
* * * * * * ** * * **
1212030 CTTTCAAAGGCATGAGTGACTATAAATAGATATTTCTTATCAATGAATGACTTTCACTTCATGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGA-CTTTCTTGCCAATGGATGGCTTTTGCTTCATGTT
* ** * * * * ** * * * * *
1212095 TTTTGAGATACACATCCAATTATGAACTGTTTTCACCAAAAATG-AAAAAATACAAAACCTAAAA
65 TCTTGAGGCAAATATTCAATTACGATGTGTTTTAACCTAAAATGAAAAAAATTC--AGCTTAAAA
* ** * * * *
1212159 TCATTTTTATGATTATAAAAC-CGTATAGAGT-GAGTAACTAGG
128 TCATTTATACAACTATAAAACAC-T-TA-AATAGACTAACAAGG
* * * * * * * **
1212201 CTTTCGAAGGCATGAGT-AACTATAAATGAACTTTTTTGATCAATGGATGGCTTTTGCTTCACAT
1 CTTTCAAAAGTATGAGTGAA-TATCAATGGACTTTCTTG-CCAATGGATGGCTTTTGCTTCATGT
* * * * *** *
1212265 TTCTTGAGGCAAACATCCAATTATGAT-TTTCTTTAATAAAAAATGAAAAAAAAAAACTCTA-CT
64 TTCTTGAGGCAAATATTCAATTACGATGTGT-TTTAACCTAAAATG----AAAAAAATTC-AGCT
* * *
1212328 TAAAATCATTTATA-AGA-TCATAAAATCATTTAAAGTA-AGTAATTAA-G
123 TAAAATCATTTATACA-ACT-ATAAAA-CACTTAAA-TAGACTAA-CAAGG
* * * * * * * * *** *
1212375 CTTTCGAAGGCATGAGTGACTATGAATGGATTTTTCTTGTCAAGGGATGGCTTTCATTTTATGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGA-CTTTCTTGCCAATGGATGGCTTTTGCTTCATGTT
* * * * * * * * **
1212440 TCCT-AAGCAAACA-TCTAATTATGATCTGTTTTAACCAAAAATGAAATAGAATTCAACTTAAGC
65 TCTTGAGGCAAATATTC-AATTACGATGTGTTTTAACCTAAAATGAAA-AAAATTCAGCTTAAAA
* * * *** * * *
1212503 TCA-TTATGA-GATTATAAAACCATTTGAGGCA-AGTAACTAGC
128 TCATTTAT-ACAACTATAAAA-CACTT-AAATAGACTAACAAGG
** **
1212544 CTTTCAAAAGTATGAGTGAATA-CAAATGGACCTTTCTTGTGAATGGATGG-TGTTCACTTCATG
1 CTTTCAAAAGTATGAGTGAATATC-AATGGA-CTTTCTTGCCAATGGATGGCT-TTTGCTTCATG
* * * * *
1212607 TTTTTTAAGGCAAATATTCAATTATGATGTGTTTTAACCTAGAATGAAAAAAATTCTA-CTCAAA
63 TTTCTTGAGGCAAATATTCAATTACGATGTGTTTTAACCTAAAATGAAAAAAATTC-AGCTTAAA
* * **
1212671 ATCATTTGTA-ACGCTATACAATGACTTAAATAGACTAACAAGG
127 ATCATTTATACA-ACTATA-AAACACTTAAATAGACTAACAAGG
* * *
1212714 CTTTCAAAAGTATAAGTGACTATCAATGGACTTTTCTTGCCAATGGATGGCTTTTGTTTCATGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGAC-TTTCTTGCCAATGGATGGCTTTTGCTTCATGTT
* ** * * * *
1212779 TCCTGAGGCAAATAGCCAATTACGGTCG-GTGTTAACCAAAAATGAAAAGAAAATCAGCTTAAAA
65 TCTTGAGGCAAATATTCAATTACGAT-GTGTTTTAACCTAAAATGAAAA-AAATTCAGCTTAAAA
* * * **
1212843 TCA-TTATACAATTATAAAACATTTAAATCGGGTAACAAGG
128 TCATTTATACAACTATAAAACACTTAAATAGACTAACAAGG
* * * * ** *
1212883 CTTTCAAAGGCATGAGTGATTATAAATGGACTTTCTT-CTCAACAGATGGCTTTTGCTTCACGTT
1 CTTTCAAAAGTATGAGTGAATATCAATGGACTTTCTTGC-CAATGGATGGCTTTTGCTTCATGTT
* * * *
1212947 TCTTGAGGCAAACATTCAATTACAATTTGTTTTAACCTAAAATG-AAAAAATTCATCTTAAAATC
65 TCTTGAGGCAAATATTCAATTACGATGTGTTTTAACCTAAAATGAAAAAAATTCAGCTTAAAATC
1213011 ATTTATA
130 ATTTATA
1213018 AGGTTATAAA
Statistics
Matches: 1013, Mismatches: 235, Indels: 164
0.72 0.17 0.12
Matches are distributed among these distances:
166 16 0.02
167 11 0.01
168 67 0.07
169 224 0.22
170 303 0.30
171 243 0.24
172 14 0.01
173 35 0.03
174 82 0.08
175 11 0.01
176 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (168 bp):
CTTTCAAAAGTATGAGTGAATATCAATGGACTTTCTTGCCAATGGATGGCTTTTGCTTCATGTTT
CTTGAGGCAAATATTCAATTACGATGTGTTTTAACCTAAAATGAAAAAAATTCAGCTTAAAATCA
TTTATACAACTATAAAACACTTAAATAGACTAACAAGG
Found at i:1214163 original size:171 final size:170
Alignment explanation
Indices: 1213502--1214164 Score: 421
Period size: 170 Copynumber: 3.9 Consensus size: 170
1213492 ATAAAAAAAC
* * * * * * * *
1213502 TTTATAAGATTATAAAACCATTTAAAGCGAGCAACTAGGCTTTTGAAAGCATAAGTGATTATAAA
1 TTTATGAGATTA-GAAACCATTTAAAGCGAGTAACAAGGCTATCGAAGGCATAAGTAATTATAAA
* * * * * * *
1213567 T-GAACTTTTCTTGTGAATGGATGGCTTTCACTTCATA-TTTCCGAAGGCAAACAT-CAATTATA
65 TAG-ATTTTTCTTATCAATGGATGACCTTCACTTCA-ACTTTCCTAAGGCAAACATCCAATTATG
* * * * * * * *
1213629 ATCTGTTCTAACTTGAAATAAAAAAAATTT-AATTTAAAATCA
128 ATCTATTTTATCCTAAAATGAAAAAAATTTGAACTTAAAATTA
* * * * * * ** * * * * ** * * *
1213671 TTTATAACATAATGCAACGACTTAAATAGACTAACAAAGATTTTAAAAGCATAGGTAACTATAAA
1 TTTATGAGATTA-GAAACCATTTAAAGCGAGTAACAAGGCTATCGAAGGCATAAGTAATTATAAA
* *** ** ** * * *
1213736 TTGAGTTTTT-TTATCAATGGATGGTTTTTGCTTCATGTTTCCTAATGCAAACATCCAATTTTGC
65 TAGA-TTTTTCTTATCAATGGATGACCTTCACTTCAACTTTCCTAAGGCAAACATCCAATTATGA
* ** *
1213800 TCTATTTTAACAAAAAATGTAAAAACAA-TTG-GCTTAAAATTA
129 TCTATTTTATCCTAAAATG-AAAAA-AATTTGAACTTAAAATTA
* * * * * *
1213842 TTTATGGGATTAGAAACCATTTATATCGAGTAACAAGGCTATCGAAGGTATGAGTATTTATAAAT
1 TTTATGAGATTAGAAACCATTTAAAGCGAGTAACAAGGCTATCGAAGGCATAAGTAATTATAAAT
* * * * * ** * *
1213907 GGATTTTTCTTCTCAATGGATGGCTTTCGCTTCATGTTTCCTGAGGCAAACATCCAATTATGATT
66 AGATTTTTCTTATCAATGGATGACCTTCACTTCAACTTTCCTAAGGCAAACATCCAATTATGATC
*
1213972 TATTTTATCCTAACATGAAAAAAATTTGAACTTAAAATTA
131 TATTTTATCCTAAAATGAAAAAAATTTGAACTTAAAATTA
* * * * *
1214012 TTTATGAGATTATAAGACCATTTAAAGCG-GATAACTAGGCTTTTGATGGCATAAGTAATTATAA
1 TTTATGAGATTAGAA-ACCATTTAAAGCGAG-TAACAAGGCTATCGAAGGCATAAGTAATTATAA
* *
1214076 ATAGACTTTTT-TTATCAATGGATGACCTTCACTTCACACTTTCC-AAGGCAAATATCCATTTAT
64 ATAGA-TTTTTCTTATCAATGGATGACCTTCACTTCA-ACTTTCCTAAGGCAAACATCCAATTAT
* *
1214139 GATCTGTTTTAGT-GTAAAATGAAAAA
127 GATCTATTTTA-TCCTAAAATGAAAAA
1214165 CAAAATCAAT
Statistics
Matches: 381, Mismatches: 98, Indels: 28
0.75 0.19 0.06
Matches are distributed among these distances:
168 2 0.01
169 98 0.26
170 147 0.39
171 121 0.32
172 13 0.03
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (170 bp):
TTTATGAGATTAGAAACCATTTAAAGCGAGTAACAAGGCTATCGAAGGCATAAGTAATTATAAAT
AGATTTTTCTTATCAATGGATGACCTTCACTTCAACTTTCCTAAGGCAAACATCCAATTATGATC
TATTTTATCCTAAAATGAAAAAAATTTGAACTTAAAATTA
Found at i:1215863 original size:170 final size:170
Alignment explanation
Indices: 1214857--1218629 Score: 2101
Period size: 170 Copynumber: 22.2 Consensus size: 170
1214847 CTTAAGGAAT
* * * * * * * *
1214857 TATAAAT-GAACTTTTCTTGCCAAGGGATAGCTTTAGCTTCATGTTTCTCGAA-ACAAATAAT-T
1 TATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-CTAAGGCAAA-CATCC
* * * *
1214919 AATTATGATTTGTTTTAACCTAAAATGAAAAAAATT-ATCTTAAAATCATTTACAGAGTTATAAA
63 AATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCATCTTAAAATCATTTATA-AGTTATAAA
** * * ** * * *
1214983 A-TCCCTTAAAGCT-AAT-A-ATATGCTTTTTGACGACATGTGTGAC
127 ACT-ATTTAAAG-TGAGTAACATAGGC-TTTCAAAGGCATGAGTGAC
* * * *
1215026 TAT-AATAGACTTTTCTTCTCAATGGATGGCTTTCGCTTCACT-CTTCCCAACGCAAACATCCAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-TGTTTCCTAAGGCAAACATCCAA
* ** * * *
1215089 TTATGATATGTTTTAACCAAAAATAAAAACAAATTCAAGTTAAAATAATTTATCAGATTCTAAAA
65 TTATGATCTGTTTTAACCAAAAATAAAAA-AAATTCATCTTAAAATCATTTATAAG-TTATAAAA
* *
1215154 CAATTTAAAGTGAGTAAC-TAGGCTTTCGAAGGCATGAGTGAC
128 CTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * *
1215196 TATAAATAAACTCTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-CTCAAGGCAAACATCTAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * *
1215260 TTATGATTTGTATTAACCAAAAATGAAAGAAAAAAACTCAACCTAAAATCATTTATAAGATTATA
65 TTATGATCTGTTTTAACCAAAAAT---A-AAAAAAATTCATCTTAAAATCATTTATAAG-TTATA
* * * *
1215325 AAA-TCGTTTAAA-TCAAGTAAC-TAGGCTTTCGAAGGCATGAATGAC
125 AAACT-ATTTAAAGT-GAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * *
1215370 CATAAATGGACTTTTCTTATCAAGGGATGGCTTTCGCTTCATGTTTCCTAAAGCAAACTTCTAGT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * * * * * *
1215435 TATGTTCTGTTTTAACTATAAATGAAATAGAATTCAACTTAAACTCA-TTATGAGATTATAAAAT
66 TATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAAAC
* * * * *
1215499 TATTTAAAATGAGTAAC-TAGGCTTTCAAAAGTATGGGTGAA
129 TATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * ** * * *
1215540 TAT-AATGGACTTTTCTTGTGAATAGATGGCTTTCAATTTATGTTT-CTCGATGCAAACATCCAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAA
* *** * * *
1215603 TTATGATCTGTTTTAACCTAAAATGCTAATAATTCTAT-TTAAAATCATTTAAAACGTTAGACAA
65 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTC-ATCTTAAAATCATTTATAA-GTTATA-AA
* * * * * *
1215667 A-GA-CTAAAAT-AG--ACTTGTAGGGCTTTCAAAGTCATAAGTGAC
127 ACTATTTAAAGTGAGTAAC--ATA-GGCTTTCAAAGGCATGAGTGAC
* * * * * *
1215709 TATAAATATG-TTTTTCTTATCAATGGATGGCTTTCACTTCATGTTTCATGAGGCAAACATCGAA
1 TATAAATA-GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAA
*
1215773 TTATGATCTGTTTTAACCCAAAATAAAAAAAATTCATCTTAAAATCATTTATAAAGTTATAAAAC
65 TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCATCTTAAAATCATTTAT-AAGTTATAAAAC
* * * *
1215838 TACTGAAAGTGAGTAACAT-GGCTTTCGAAGGCATCAGTGAC
129 TATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * ** * *
1215879 TATAAATAGAGTTTTCTTGTCCATTGATGCCTTTTGCTTTACGTTT-CTCAAGGTGAAGATCTAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * *
1215943 TTATGATCTGTTTTAACTAAAAGAGAAAAATAATTCAACTTAAAATCATTTTTGAGATTATAAAA
65 TTATGATCTGTTTTAACCAAAA-ATAAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAAA
** * * * *
1216008 CTATTTAAAACGAATAAC-TAGGCTTTCATAGGTATAAGTGAC
128 CTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * * *
1216050 TACAAATGGACCTTTCTTGTCAATGGATAGCTTTTGCTTCATGTTTCCCAATGCTAACATCAAAT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
* ** * ** *
1216115 TATAATCTAATTTAACAAAAAATAAAATTCAATTCAAT-TTAAAATCCTTTATAAAGTTATAAAA
66 TATGATCTGTTTTAACCAAAAATAAAA-AAAATTC-ATCTTAAAATCATTTAT-AAGTTATAAAA
* * * * * *
1216179 CCATTCAAAGCGA--AAAATAAGACTTTCAAAGGCATGAGTGAT
128 CTATTTAAAGTGAGTAACAT-AGGCTTTCAAAGGCATGAGTGAC
* * *
1216221 TATAAA-AGGAGC-TTTCTTATCAATAGATGGCTTTCGCTTCATGTTT-CTCAAGGAAAACATCC
1 TATAAATA-GA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCC
* * * * * * ** *
1216283 AATTATGATCTATTTTAAGCAAAAAT-GAAAAAGTTCAGCTTAAAATAATTTATGGGATTCTAAA
63 AATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAA
* * * ** *
1216347 ACTATTTAAATTCAGTAAC-TAAGCTTTCGGAGGCATGAGTGGC
127 ACTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * * *
1216390 TATAAATGGAC---TGTTATCAATGGATGACTTAT-GATTCACGTTACCCAAGGAAAACATCCAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCATGTTTCCTAAGGCAAACATCCAA
* * * * * * *
1216451 TTATGATTTGCTTTAACAAAAAATGAACAAAAACTCAAC-AAAAATCATTTATAAGATTATAAAA
65 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAAA
** * ** *
1216515 CTATTTAAAGCAAGTAAC-TATGCTTTTTAAGGTATGA-TGAC
128 CTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * *
1216556 TATAAATGGACTTTTCTTGTCAAAGGATGGCTTTTGCTTCATGTTTCCTAGGGCAAGCATCTAAT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
* * ** *
1216621 TATGATATATTTTAA-CATAAAATGAAGCAAAATTCAAT-TTAAACTCA-TTATAAGATTATAAA
66 TATGATCTGTTTTAACCA-AAAAT-AAAAAAAATTC-ATCTTAAAATCATTTATAAG-TTATAAA
* ** * * *
1216683 ACCATTTAAAACGAGTAA-TTAGGCTTTC-GAGAGCATGAGTGAT
127 ACTATTTAAAGTGAGTAACATAGGCTTTCAAAG-GCATGAGTGAC
* * ** * * *
1216726 TAAAAATAGACTTTTCTTCTCAACAGATGACTTGT-GCTTCATATTTCCTAAGGCAAACATTCAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTT-TCGCTTCATGTTTCCTAAGGCAAACATCCAA
* * *
1216790 TTATGATTTGTTTTAACCTAAAGCA-AAAAAAAATT-ATCTTAAAATCATTTATAGAGTTATTAA
65 TTATGATCTGTTTTAACC-AAA-AATAAAAAAAATTCATCTTAAAATCATTTATA-AGTTATAAA
* * * * ** * *
1216853 ACCACTTAAAGCT-AGTAATA-AGGTTTTTGATGGCATTAGTGAC
127 ACTATTTAAAG-TGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * *
1216896 TATAAATAGACTTTTCTTGCCAATGGATGGCTGTCGCTTCA-GTTTTCCTAAGGAAAACATCCTA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATG-TTTCCTAAGGCAAACATCCAA
* *** * *
1216960 TTATGATCTATTTTAAGTGAAAATGAAAAAAAAATT-AACTTAAAATCATTTATCAGATTATAAA
65 TTATGATCTGTTTTAACCAAAAAT--AAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAA
* ** * *
1217024 GA--AATTAAAGCAAGTAAC-TAGGCTTTC-GAGACATGAGTGAC
127 -ACTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * *
1217065 TATAAAT-GAACTTTTCCTATCAATAGATGACTTTTGCTTCATATTTTCTGAGGCAAACATCCAA
1 TATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAA
* * * * * * * *
1217129 TTATGATTTGCTTTAACAAAAAATGAAAACAAACTCAACCTAAAATCATTTATAAAATTATAAAA
65 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCATCTTAAAATCATTTAT-AAGTTATAAAA
** ** *
1217194 C-CGTTAAAGCAAGTAAC-TAGGCTTTCGAAA-GCATGAGTAAC
128 CTATTTAAAGTGAGTAACATAGGCTTTC-AAAGGCATGAGTGAC
* * * ** * * *
1217235 CATAAATGGACTTTTCTTGTCAAGGGATGAATTTCACTTCATGTATCCCT-AGGCAAACATCTAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGT-TTCCTAAGGCAAACATCCAA
* * * * * * * * *
1217299 TTAGGATATATTTTAACCATATATGAAATAAAATTCAACTTAAATTCA-TTATGAGTTGATAAAA
65 TTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCATCTTAAAATCATTTATAAGTT-ATAAAA
* * * * *
1217363 -TCATTTAAAGCGAGTAAC-TAGGTTTTCAAAAGTATGAGTGAA
128 CT-ATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * * *
1217405 TATAAATGGACTTTTCTTCTGAATAGATGGCTTTCGCTTCATGTTTCTTGAGCCAAACACCCAAT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * * *
1217470 TATGGTCTGTTTTAACCTAAAAT-GAAATAATCCAAT-TTAAAATCATTTATACCA-TTATACAA
66 TATGATCTGTTTTAACCAAAAATAAAAAAAATTC-ATCTTAAAATCATTTATA--AGTTATAAAA
* * **
1217532 CGACTTAAA-T-AGGCTAACA-AGGCTTTCAAACACATGAGTGAC
128 CTATTTAAAGTGA-G-TAACATAGGCTTTCAAAGGCATGAGTGAC
** * *
1217574 TATAAAT-GAACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTTCTAAGGCAAACATCCCA
1 TATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAA
* * * * *
1217638 TTATGATCTGTTTTAACCCAAAAAGAAAAACAATTCATCTTAAAATTATTTATAAATTTACAAAA
65 TTATGATCTGTTTTAA-CCAAAAATAAAAAAAATTCATCTTAAAATCATTTAT-AAGTTATAAAA
* * * * *
1217703 C-CTCTAAATGTGAGTAAGAT-GGTTTTCGAAGGCATGAGTGAC
128 CTATTTAAA-GTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * * * *
1217745 TATAAATAGAGTTATT-TTATCAATGGATAGTTTTCACTTCATGTTT-CTAGAGGCAAATATCTA
1 TATAAATAGACTT-TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTA-AGGCAAACATCCA
* * * * * * *
1217808 ATTAAGATCT-ATTTAACCAAAAGTGACAAACAATTCAAT-TTAAAATTATTTATGAGATTATAA
64 ATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTC-ATCTTAAAATCATTTATAAG-TTATAA
* ** * * *
1217871 AACCATTTAAAGCAAGTAAGA-AGGCTTTCAAAGGCAAT-AATGGC
126 AACTATTTAAAGTGAGTAACATAGGCTTTCAAAGGC-ATGAGTGAC
* * * * * ** * * *
1217915 TATAAATGGACTTTTTTTATTAATGGATTGCTTTCGCTTCACATTTCCCAATGCAAACATCAAAT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
* * * ** *
1217980 GATAATCTATTTTAAAGAAAAATGAAAAAAAATTCAAT-TTAAAATCATTTGTAAAGTTATAAAA
66 TATGATCTGTTTTAACCAAAAAT-AAAAAAAATTC-ATCTTAAAATCATTTAT-AAGTTATAAAA
* * * * ** * *
1218044 CCATTGAAAGTGA-TAA-GTAATGCTTTTGAAGGTATGAATGAC
128 CTATTTAAAGTGAGTAACAT-AGGCTTTCAAAGGCATGAGTGAC
* ** * ** *
1218086 TATAAA-AGGAGC-TTTCTTGTCAATGGATGGCTTTCACTTCACATTT-CTCGAGATAAACATCT
1 TATAAATA-GA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCC
* * * * * * * * * * *
1218148 TATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT-A
63 AATTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAA
* *** * * *
1218212 AACAATTTAAACCAAGTAAC-TAGGC-TTCGAAGGCTTAAGTGAC
126 AACTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * ** * ** **
1218255 TATAAATGGACTTTTTTTGTCAATGGATAGCTTTCACTTCACATTT-CTCGAGATAAACATCTTA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * * * * * *
1218319 TTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT-AAA
65 TTATGATCTGTTTTAACCAAAAA-TAAAAAAAATTCATCTTAAAATCATTTATAAG-TTATAAAA
* *** * * *
1218383 CAATTTAAACCAAGTAAC-TAGGC-TTCGAAGGCTTAAGTGAC
128 CTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * * * **
1218424 TATAAATGGACTTTTCTTGTCAGTGGATGGCTTTTGCTTTACATTT-CTCAAGGCAAACATCCAA
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAA
* * ** *
1218488 TTATGATTTGCTTTAACCAAAAATGAAAAAAAAACTGAATC-TAAAATCATTTATAAGATTATGA
65 TTATGATCTGTTTTAACCAAAAAT--AAAAAAAA-TTCATCTTAAAATCATTTATAAG-TTATAA
* ** * * ** * *
1218552 AACCATTTAAAGCAACTAAC-TAGGTTTTTTAAGACATAAGTGAC
126 AACTATTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
* * *
1218596 TATAAATGGACTTTTCTTGTCAAGGGATAGCTTT
1 TATAAATAGACTTTTCTTGTCAATGGATGGCTTT
1218630 TGTAATGACC
Statistics
Matches: 2828, Mismatches: 619, Indels: 311
0.75 0.16 0.08
Matches are distributed among these distances:
165 2 0.00
166 72 0.03
167 59 0.02
168 138 0.05
169 788 0.28
170 860 0.30
171 697 0.25
172 67 0.02
173 2 0.00
174 137 0.05
175 6 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
TATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCTAAGGCAAACATCCAAT
TATGATCTGTTTTAACCAAAAATAAAAAAAATTCATCTTAAAATCATTTATAAGTTATAAAACTA
TTTAAAGTGAGTAACATAGGCTTTCAAAGGCATGAGTGAC
Found at i:1217072 original size:509 final size:507
Alignment explanation
Indices: 1214920--1218631 Score: 2247
Period size: 509 Copynumber: 7.3 Consensus size: 507
1214910 CAAATAATTA
* *
1214920 ATTATGATTTGTTTTAACCTAAAATG--AAAAAAATTATCTTAAAATCATTTA-CAGAGTTATAA
1 ATTATGATCTGTTTTAA-CTAAAATGAAAAAAAAATTAACTTAAAATCATTTATCAGA-TTATAA
** * * * * * *
1214982 AATCCCTTAAAGCTAA-TAA-TATGCTTTTTGACGACATGTGTGACTAT-AATAGACTTTTCTTC
64 AAT-ATTTAAAGC-AAGTAACTAGGC--TTTCAAGACATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * *
1215044 TCAATGGATGGCTTTCGCTTCACT-CTTCCCAACGCAAACATCCAATTATGATATGTTTTAACCA
125 TCAAAGGATGGCTTTTGCTTCA-TGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACAA
* * * * * * * *
1215108 AAAATAAAAACAAATTCAAGTTAAAATAATTTATCAGATTCTAAAACAATTTAAAGTGAGTAACT
189 AAAATAAAAA-AAATTCAATTTAAAATCA-TTATAAAATTATAAAACCATTTAAAGCGAGTAATT
* * * * *
1215173 AGGCTTTCGAAGGCATGAGTGACTATAAATAAACTCTTCTTGTCAATGGATGGCTTTCGCTTCAA
252 AGGCTTTCGAAAGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCAT
* * * *
1215238 GTTT-CTCAAGGCAAACATCTAATTATGATTTGTATTAACCAAAAATGAAAGAAAAAAACTCAAC
317 GTTTCCT-AAGGCAAACATCTAATTATGATCTGTTTTAACC-TAAA-G-AA-AAAAAAATTCAAC
* * * * * *
1215302 CTAAAATCATTTATA-AGATTATAAAATCGTTTAAATCAAGTAACT-AGGCTTTCGAAGGCATGA
377 TTAAAATCATTTATAGAG-TTATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGCATGA
* * * * * *
1215365 ATGACCATAAATGGACTTTTCTTATCAAGGGATGGCTTTCGCTTCA-TGTTTCCTAAAGCAAAC-
441 GTGACTATAAATGGACTTTTCTT-CCAATGGATGGCTTTCGCTTCAGT-TTTCCTAAGGAAAACA
*
1215428 TTCT
504 TCCT
* * * * *
1215432 AGTTATGTTCTGTTTTAACTATAAATG-AAATAGAATTCAACTTAAACTCA-TTATGAGATTATA
1 A-TTATGATCTGTTTTAACTA-AAATGAAAAAAAAATT-AACTTAAAATCATTTATCAGATTATA
*** * * * *
1215495 AAATTATTTAAAATGAGTAACTAGGCTTTCAAAAGTATGGGTGAATAT-AATGGACTTTTCTTGT
63 AAA-TATTTAAAGCAAGTAACTAGGCTTTCAAGA-CATGAGTGACTATAAATGGACTTTTCTTGT
* *** * * * **
1215559 GAATA-GATGGCTTTCAATTTATGTTT-CTCGATGCAAACATCCAATTATGATCTGTTTTAACCT
126 CAA-AGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAACAA
*** * * * * * * ** *
1215622 AAAATGCTAATAATTCTATTTAAAATCATT-TAAAACGTTAGACAAA-GACTAAAATAGACT--T
189 AAAATAAAAAAAATTCAATTTAAAATCATTATAAAA--TTATA-AAACCATTTAAAGCGAGTAAT
* * *
1215683 GTAGGGCTTTC-AAAGTCATAAGTGACTATAAATATG-TTTTTCTTATCAATGGATGGCTTTCAC
251 -TA-GGCTTTCGAAAG-CATGAGTGACTATAAATA-GACTTTTCTTATCAATGGATGGCTTTCGC
* * * * *
1215746 TTCATGTTTCATGAGGCAAACATCGAATTATGATCTGTTTTAACCCAAA-ATAAAAAAAATTCAT
312 TTCATGTTTCCTAAGGCAAACATCTAATTATGATCTGTTTTAACCTAAAGA-AAAAAAAATTCAA
* * * * * * *
1215810 CTTAAAATCATTTATAAAGTTATAAAACTACTGAAAG-TGAGTAAC-ATGGCTTTCGAAGGCATC
376 CTTAAAATCATTTATAGAGTTATAAAACCATTTAAAGCT-AGTAACTAAGGTTTTCGAAGGCATG
* * * * * * **
1215873 AGTGACTATAAATAGAGTTTTCTTGTCC-ATTGATGCCTTTTGCTTTACG-TTT-CTCAAGGTGA
440 AGTGACTATAAATGGACTTTTC-T-TCCAATGGATGGCTTTCGCTTCA-GTTTTCCT-AAGGAAA
*
1215935 AGAT-CT
501 ACATCCT
* * *
1215941 AATTATGATCTGTTTTAACTAAAA-GAGAAAAATAATTCAACTTAAAATCATTTTTGAGATTATA
1 -ATTATGATCTGTTTTAACTAAAATGA-AAAAAAAATT-AACTTAAAATCATTTATCAGATTATA
* ** * * *
1216005 AAACTATTTAAAACGAA-TAACTAGGCTTTCATAGGTATAAGTGACTACAAATGGACCTTTCTTG
63 AAA-TATTTAAAGC-AAGTAACTAGGCTTTCA-AGACATGAGTGACTATAAATGGACTTTTCTTG
* * * * * * * **
1216069 TCAATGGATAGCTTTTGCTTCATGTTTCCCAATGCTAACATCAAATTATAATCTAATTTAACAAA
125 TCAAAGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACAAA
** * * * ** *
1216134 AAATAAAATTCAATTCAATTTAAAATCCTTTATAAAGTTATAAAACCATTCAAAGCGAAAAATAA
190 AAATAAAA-AAAATTCAATTTAAAAT-CATTATAAAATTATAAAACCATTTAAAGCGAGTAATTA
* * *
1216199 GACTTTC-AAAGGCATGAGTGATTATAAA-AGGAGC-TTTCTTATCAATAGATGGCTTTCGCTTC
253 GGCTTTCGAAA-GCATGAGTGACTATAAATA-GA-CTTTTCTTATCAATGGATGGCTTTCGCTTC
* * * * * * *
1216261 ATGTTT-CTCAAGGAAAACATCCAATTATGATCTATTTTAAGC-AAA-AATGAAAAAGTTCAGCT
315 ATGTTTCCT-AAGGCAAACATCTAATTATGATCTGTTTTAACCTAAAGAA-AAAAAAATTCAACT
* * * * * * *
1216323 TAAAATAATTTAT-GGGATTCTAAAACTATTTAAA-TTCAGTAACTAA-GCTTTCGGAGGCATGA
378 TAAAATCATTTATAGAG-TTATAAAACCATTTAAAGCT-AGTAACTAAGGTTTTCGAAGGCATGA
* * * * * * *
1216385 GTGGCTATAAATGGACTGTT-AT-CAATGGATGACTTAT-GATTCACG-TTACCCAAGGAAAACA
441 GTGACTATAAATGGACTTTTCTTCCAATGGATGGCTT-TCGCTTCA-GTTTTCCTAAGGAAAACA
*
1216446 TCCA
504 TCCT
* * * * * * * *
1216450 ATTATGATTTGCTTTAACAAAAAATGAACAAAAACTCAAC-AAAAATCATTTATAAGATTATAAA
1 ATTATGATCTGTTTTAAC-TAAAATGAAAAAAAAATTAACTTAAAATCATTTATCAGATTATAAA
* * **
1216514 ACTATTTAAAGCAAGTAACTATGCTTTTTAAGGTATGA-TGACTATAAATGGACTTTTCTTGTCA
65 A-TATTTAAAGCAAGTAACTAGGC-TTTCAAGACATGAGTGACTATAAATGGACTTTTCTTGTCA
* * * * * *
1216578 AAGGATGGCTTTTGCTTCATGTTTCCTAGGGCAAGCATCTAATTATGATATATTTTAACATAAAA
128 AAGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAA
** * * *
1216643 TGAAGCAAAATTCAATTTAAACTCATTATAAGATTATAAAACCATTTAAAACGAGTAATTAGGCT
193 T-AAAAAAAATTCAATTTAAAATCATTATAAAATTATAAAACCATTTAAAGCGAGTAATTAGGCT
* * * * ** * *
1216708 TTCGAGAGCATGAGTGATTAAAAATAGACTTTTCTTCTCAACAGATGACTTGT-GCTTCATATTT
257 TTCGAAAGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTT-TCGCTTCATGTTT
* *
1216772 CCTAAGGCAAACAT-TCAATTATGATTTGTTTTAACCTAAAGCAAAAAAAAATT-ATCTTAAAAT
321 CCTAAGGCAAACATCT-AATTATGATCTGTTTTAACCTAAAG-AAAAAAAAATTCAACTTAAAAT
* * * * *
1216835 CATTTATAGAGTTATTAAACCACTTAAAGCTAGTAA-TAAGGTTTTTGATGGCATTAGTGACTAT
384 CATTTATAGAGTTATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGCATGAGTGACTAT
* *
1216899 AAATAGACTTTTCTTGCCAATGGATGGCTGTCGCTTCAGTTTTCCTAAGGAAAACATCCT
449 AAATGGACTTTTCTT-CCAATGGATGGCTTTCGCTTCAGTTTTCCTAAGGAAAACATCCT
* *
1216959 ATTATGATCTATTTTAAGTGAAAATGAAAAAAAAATTAACTTAAAATCATTTATCAGATTATAAA
1 ATTATGATCTGTTTTAACT-AAAATGAAAAAAAAATTAACTTAAAATCATTTATCAGATTATAAA
* * * * *
1217024 GA-AATTAAAGCAAGTAACTAGGCTTTCGAGACATGAGTGACTATAAATGAACTTTTCCTATCAA
65 -ATATTTAAAGCAAGTAACTAGGCTTTCAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAA
* * * * * *
1217088 TA-GATGACTTTTGCTTCATATTTTCTGAGGCAAACATCCAATTATGATTTGCTTTAACAAAAAA
129 -AGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAA
* * ** * * *
1217152 TGAAAACAAACTCAACCTAAAATCATTTATAAAATTATAAAACC-GTTAAAGCAAGTAACTAGGC
193 T-AAAAAAAATTCAATTTAAAATCA-TTATAAAATTATAAAACCATTTAAAGCGAGTAATTAGGC
* * * * * ** *
1217216 TTTCGAAAGCATGAGTAACCATAAATGGACTTTTCTTGTCAAGGGATGAATTTCACTTCATGTAT
256 TTTCGAAAGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGT-T
* * * * * * *
1217281 CCCT-AGGCAAACATCTAATTAGGATATATTTTAACCATATATG-AAATAAAATTCAACTTAAAT
320 TCCTAAGGCAAACATCTAATTATGATCTGTTTTAACC-TA-AAGAAAAAAAAATTCAACTTAAAA
* * * * * *
1217344 TCA-TTAT-GAGTTGATAAAATCATTTAAAGCGAGTAACT-AGGTTTTCAAAAGTATGAGTGAAT
383 TCATTTATAGAGTT-ATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGCATGAGTGACT
* * * * ** * *
1217406 ATAAATGGACTTTTCTTCTGAATAGATGGCTTTCGCTTCA-TGTTTCTTGAGCCAAACACCCA
447 ATAAATGGACTTTTCTTC-CAATGGATGGCTTTCGCTTCAGT-TTTCCTAAGGAAAACATCCT
* * * * *
1217468 ATTATGGTCTGTTTTAACCTAAAATG---AAATAATCCAATTTAAAATCATTTAT-ACCATTATA
1 ATTATGATCTGTTTTAA-CTAAAATGAAAAAAAAAT-TAACTTAAAATCATTTATCA-GATTATA
** * * * * * *
1217529 CAACGACTTAAA-TAGGCTAACAAGGCTTTCAAACACATGAGTGACTATAAATGAACTTTTCTTG
63 -AAATATTTAAAGCAAG-TAACTAGGCTTTC-AAGACATGAGTGACTATAAATGGACTTTTCTTG
* * * * *
1217593 TCAATGGATGGCTTTTACTTCATGTTTTCTAAGGCAAACATCCCATTATGATCTGTTTTAACCCA
125 TCAAAGGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAA-CAA
* * * * * * *
1217658 AAAAGAAAAACAATTC-ATCTTAAAATTATTTATAAATTTACAAAACC-TCTAAATGTGAGTAA-
189 AAAATAAAAAAAATTCAAT-TTAAAATCA-TTATAAAATTATAAAACCATTTAAA-GCGAGTAAT
* * * * * * *
1217720 GATGGTTTTCGAAGGCATGAGTGACTATAAATAGAGTTATT-TTATCAATGGATAGTTTTCACTT
251 TA-GGCTTTCGAAAGCATGAGTGACTATAAATAGACTT-TTCTTATCAATGGATGGCTTTCGCTT
* * * * * * * *
1217784 CATGTTT-CTAGAGGCAAATATCTAATTAAGATCT-ATTTAACCAAAAGTGACAAACAATTCAAT
314 CATGTTTCCTA-AGGCAAACATCTAATTATGATCTGTTTTAACCTAAAG-AAAAAAAAATTCAAC
* * * * *
1217847 TTAAAATTATTTAT-GAGATTATAAAACCATTTAAAGCAAGTAA-GAAGGCTTTCAAAGGCAAT-
377 TTAAAATCATTTATAGAG-TTATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGC-ATG
* * * ** * ** * * *
1217909 AATGGCTATAAATGGACTTTTTTTATTAATGGATTGCTTTCGCTTCACATTTCCCAATGCAAACA
440 AGTGACTATAAATGGACTTTTCTT-CCAATGGATGGCTTTCGCTTCAGTTTTCCTAAGGAAAACA
**
1217974 TCAA
504 TCCT
* * * ** * * *
1217978 ATGATAATCTATTTTAAAGAAAAATG-AAAAAAAATTCAATTTAAAATCATTTGT-AAAGTTATA
1 ATTATGATCTGTTTT-AACTAAAATGAAAAAAAAATT-AACTTAAAATCATTTATCAGA-TTATA
* * ** * * * ** * *
1218041 AAACCATTGAAAGTGA-TAAGTAATGCTTTTGAAGGTATGAATGACTATAAAAGGAGC-TTTCTT
63 AAA-TATTTAAAGCAAGTAACT-AGGC-TTTCAAGACATGAGTGACTATAAATGGA-CTTTTCTT
* ** ** * ** ** * * *
1218104 GTCAATGGATGGCTTTCACTTCACATTT-CTCGAGATAAACATCTTATTATCATTTGTTTGAACT
124 GTCAAAGGATGGCTTTTGCTTCATGTTTCCT-AAGGCAAACATCCAATTATGATCTGTTTTAAC-
* * * * * * * * * * * *
1218168 AAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT-AAACAATTTAAACCAAGTAAC
187 AAAAAATAAAAAAAATTCAATTTAAAATCA-TTATAAAATTATAAAACCATTTAAAGCGAGTAAT
* * * * * * * *
1218232 TAGGC-TTCGAAGGCTTAAGTGACTATAAATGGACTTTTTTTGTCAATGGATAGCTTTCACTTCA
251 TAGGCTTTCGAAAGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCA
** * ** * * * * * *
1218296 CATTT-CTCGAGATAAACATCTTATTATCATTTGTTTGAA-CTAAAAATTAAAAAAAAATCAACT
316 TGTTTCCT-AAGGCAAACATCTAATTATGATCTGTTTTAACCTAAAGA--AAAAAAAATTCAACT
* * * * * * * * *
1218359 TAAAGTAATTTAT-GAGATTCT-AAACAATTTAAACCAAGTAACT-AGG-CTTCGAAGGCTTAAG
378 TAAAATCATTTATAGAG-TTATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGCATGAG
* * * * ** *
1218420 TGACTATAAATGGACTTTTCTTGTCAGTGGATGGCTTTTGCTTTACATTT-CTCAAGGCAAACAT
442 TGACTATAAATGGACTTTTCTT-CCAATGGATGGCTTTCGCTTCAGTTTTCCT-AAGGAAAACAT
*
1218484 CCA
505 CCT
* * * * *
1218487 ATTATGATTTGCTTTAACCAAAAATGAAAAAAAAACTGAA-TCTAAAATCATTTATAAGATTATG
1 ATTATGATCTGTTTTAA-CTAAAATGAAAAAAAAA-TTAACT-TAAAATCATTTATCAGATTAT-
** * * * *
1218551 AAACCATTTAAAGCAACTAACTAGGTTTTTTAAGACATAAGTGACTATAAATGGACTTTTCTTGT
62 AAAATATTTAAAGCAAGTAACTAGG-CTTTCAAGACATGAGTGACTATAAATGGACTTTTCTTGT
* *
1218616 CAAGGGATAGCTTTTG
126 CAAAGGATGGCTTTTG
1218632 TAATGACCTT
Statistics
Matches: 2496, Mismatches: 554, Indels: 302
0.74 0.17 0.09
Matches are distributed among these distances:
504 1 0.00
505 112 0.04
506 171 0.07
507 88 0.04
508 103 0.04
509 765 0.31
510 483 0.19
511 229 0.09
512 266 0.11
513 147 0.06
514 113 0.05
515 18 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (507 bp):
ATTATGATCTGTTTTAACTAAAATGAAAAAAAAATTAACTTAAAATCATTTATCAGATTATAAAA
TATTTAAAGCAAGTAACTAGGCTTTCAAGACATGAGTGACTATAAATGGACTTTTCTTGTCAAAG
GATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAA
AAAAAATTCAATTTAAAATCATTATAAAATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTCG
AAAGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCCTAA
GGCAAACATCTAATTATGATCTGTTTTAACCTAAAGAAAAAAAAATTCAACTTAAAATCATTTAT
AGAGTTATAAAACCATTTAAAGCTAGTAACTAAGGTTTTCGAAGGCATGAGTGACTATAAATGGA
CTTTTCTTCCAATGGATGGCTTTCGCTTCAGTTTTCCTAAGGAAAACATCCT
Found at i:1217654 original size:339 final size:332
Alignment explanation
Indices: 1214857--1218629 Score: 1627
Period size: 339 Copynumber: 11.1 Consensus size: 332
1214847 CTTAAGGAAT
* * * * * * *
1214857 TATAAATGAACTTTTCTTGCCAAGGGATAGCTTT-AGCTTCATGTTTCTCGAA-ACAAATAAT-T
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCA-CTTCATGTTTC-CTAAGGCAAA-CATCC
* * *
1214919 AATTATGATTTGTTTTAACC-TAAAATG-AAAAAAATT-ATCTTAAAATCATT-TACAGAGTTAT
63 AATTATGATATATTTTAACCAT-AAATGAAAAAAAATTCAACTTAAAATCATTATA-AGA-TTAT
** * * * * * * *
1214980 AAAATCCCTTAAAGCTAATAA-TATGCTTTTTGACGA-CATGTGTGACTAT-AATAGACTTTTCT
125 AAAA-CATTTAAAGCGAGTAACTAGGC-TTTCGA-GAGCATGAGTGAATATAAATGGACTTTTCT
* * * *** * *
1215042 TCTCAATGGATGGCTTTCGCTTCACT-CTTCCCAACGCAAACATCCAATTATGATATGTTTTAAC
187 TCTCAATAGATGACTTT-GCTTCA-TATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAAC
* * * * * * * *
1215106 CAAAAATAAAAACAAATTCAAGTTAAAATAATTTATCAGATTCTAAAACAATTTAAAGTGAGTAA
250 CTAAAAT-GAAA-AAATCCAATTTAAAATCATTTAT-AAATTAT-AAAC-ACTTAAAGT-AGTAA
* *
1215171 CTAGGCTTTCGAAGGCATGAGTGAC
309 CAAGGCTTTC-AAAGCATGAGTGAC
* * * * *
1215196 TATAAATAAACTCTTCTTGTCAATGGATGGCTTTCGCTTCAAGTTT-CTCAAGGCAAACATCTAA
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * *
1215260 TTATGATTTGTATTAACCAAAAATGAAAGAAAAAAACTCAACCTAAAATCATTTATAAGATTATA
65 TTATGATATATTTTAACCATAAATG--A-AAAAAAATTCAACTTAAAATCA-TTATAAGATTATA
* * * * ** *
1215325 AAATCGTTTAAATCAAGTAACTAGGCTTTCGA-AGGCATGAATGACCATAAATGGACTTTTCTTA
126 AAA-CATTTAAAGCGAGTAACTAGGCTTTCGAGA-GCATGAGTGAATATAAATGGACTTTTCTTC
** * * * * * * * *
1215389 TCAAGGGATGGCTTTCGCTTCATGTTTCCTAAAGCAAACTTCTAGTTATG-TTCTGTTTTAA-CT
189 TCAATAGATGACTTT-GCTTCATATTTCTTGAGGCAAACATCCAATTATGATT-TGTTTTAACCT
* * * * * * *
1215452 ATAAATGAAATAGAATTCAACTTAAACTCA-TTATGAGATTATAAAATTATTTAAAATGAGTAAC
252 A-AAATGAAA-A-AATCCAATTTAAAATCATTTAT-AAATTAT-AAA-CACTTAAAGT-AGTAAC
* * * *
1215516 TAGGCTTTCAAAAGTATGGGTGAA
310 AAGGCTTTC-AAAGCATGAGTGAC
* * * * * * *
1215540 TAT-AATGGACTTTTCTTGTGAATAGATGGCTTTCAATTTATGTTT-CTCGATGCAAACATCCAA
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCT-AAGGCAAACATCCAA
* * ** * * * * *
1215603 TTATGATCTGTTTTAACC-TAAAATG-CTAATAATTCTATTTAAAATCATT-TAAAACGTTAGAC
65 TTATGATATATTTTAACCAT-AAATGAAAAAAAATTCAACTTAAAATCATTATAAGA--TTATA-
* * * ** * ** * * * * *
1215665 AAAGACTAAAATAGACT-TGTAGGGCTTTC-AAAGTCATAAGTGACTATAAATATG-TTTTTCTT
126 AAACATTTAAAGCGAGTAACTA-GGCTTTCGAGAG-CATGAGTGAATATAAAT-GGACTTTTCTT
* * * * * * * * *
1215727 ATCAATGGATGGCTTTCACTTCATGTTTCATGAGGCAAACATCGAATTATGATCTGTTTTAACCC
188 CTCAATAGATGACTTT-GCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCT
* * *
1215792 AAAATAAAAAAAATTC-ATCTTAAAATCATTTATAAAGTTATAAAACTACTGAAAGTGAGTAACA
252 AAAAT-GAAAAAATCCAAT-TTAAAATCATTTATAAA-TTAT-AAAC-ACTTAAAGT-AGTAACA
* * *
1215856 TGGCTTTCGAAGGCATCAGTGAC
311 AGGCTTTC-AAAGCATGAGTGAC
* * * * ** * * ** * *
1215879 TATAAAT-AGAGTTTTCTTGTCCATTGATGCCTTTTGCTTTACGTTT-CTCAAGGTGAAGATCTA
1 TATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCT-AAGGCAAACATCCA
* * * * *
1215942 ATTATGATCTGTTTTAA-C-TAAAAGAGAAAAATAATTCAACTTAAAATCATTTTTGAGATTATA
64 ATTATGATATATTTTAACCATAAATGA-AAAAA-AATTCAACTTAAAATCA-TTATAAGATTATA
* * * * * * * * *
1216005 AAACTATTTAAAACGAATAACTAGGCTTTC-ATAGGTATAAGTGACTACAAATGGACCTTTCTTG
126 AAAC-ATTTAAAGCGAGTAACTAGGCTTTCGAGA-GCATGAGTGAATATAAATGGACTTTTCTTC
* * *** * * * * * ** **
1216069 TCAATGGAT-AGCTTTTGCTTCATGTTTCCCAATGCTAACATCAAATTATAATCTAATTTAACAA
189 TCAATAGATGA-C-TTTGCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCT
* * * **
1216133 AAAAT-AAAATTCAATTCAATTTAAAATCCTTTATAAAGTTATAAA-ACCATTCAAAGCGAAAAA
252 AAAATGAAAA---AATCCAATTTAAAATCATTTATAAA-TTATAAACA-C-TT-AAAG-TAGTAA
* * *
1216196 TAAGACTTTCAAAGGCATGAGTGAT
309 CAAGGCTTTCAAA-GCATGAGTGAC
* * * * * *
1216221 TATAAAAGGAGC-TTTCTTATCAATAGATGGCTTTCGCTTCATGTTT-CTCAAGGAAAACATCCA
1 TAT-AAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCT-AAGGCAAACATCCA
* * * * * * ** *
1216284 ATTATGATCTATTTTAAGCAAAAATG--AAAAAGTTCAGCTTAAAATAATTTATGGGATTCTAAA
64 ATTATGATATATTTTAACCATAAATGAAAAAAAATTCAACTTAAAATCA-TTATAAGATTATAAA
* * ** * *
1216347 ACTATTTAAATTC-AGTAACTAAGCTTTCG-GAGGCATGAGTGGCTATAAATGGAC---TGTTAT
128 AC-ATTTAAA-GCGAGTAACTAGGCTTTCGAGA-GCATGAGTGAATATAAATGGACTTTTCTTCT
* * ** * *** * * **
1216407 CAATGGATGACTTATGATTCACGTTACCCAAGGAAAACATCCAATTATGATTTGCTTTAACAAAA
190 CAATAGATGACTT-TGCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAA
* ** * * * *
1216472 AATGAACAAAAACTCAA-CAAAAATCATTTATAAGATTATAAAACTATTTAAAGCAAGTAACTAT
254 AATGAA-AAAATC-CAATTTAAAATCATTTATAA-ATTAT-AAAC-ACTTAAAG-TAGTAACAAG
* * *
1216536 GCTTTTTAAGGTATGA-TGAC
313 GC-TTTCAAAGCATGAGTGAC
* * ** * * *
1216556 TATAAATGGACTTTTCTTGTCAAAGGATGGCTTTTGCTTCATGTTTCCTAGGGCAAGCATCTAAT
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTAAGGCAAACATCCAAT
** * *
1216621 TATGATATATTTTAA-CATAAAATGAAGCAAAATTCAATTTAAACTCATTATAAGATTATAAAAC
66 TATGATATATTTTAACCAT-AAATGAAAAAAAATTCAACTTAAAATCATTATAAGATTATAAAA-
* * * * * *
1216685 CATTTAAAACGAGTAATTAGGCTTTCGAGAGCATGAGTGATTAAAAATAGACTTTTCTTCTCAAC
129 CATTTAAAGCGAGTAACTAGGCTTTCGAGAGCATGAGTGAATATAAATGGACTTTTCTTCTCAAT
* * *
1216750 AGATGACTTGTGCTTCATATTTCCTAAGGCAAACATTCAATTATGATTTGTTTTAACCTAAAGCA
194 AGATGACTT-TGCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAA--A
** * * * *
1216815 AAAAAAAAT--TATCTTAAAATCATTTATAGAGTTATTAAACCACTTAAAGCTAGTAATAAGGTT
256 TGAAAAAATCCAAT-TTAAAATCATTTATA-AATTA-TAAA-CACTTAAAG-TAGTAACAAGG-C
* ** *
1216878 TTTGATGGCATTAGTGAC
315 TTTCAAAGCATGAGTGAC
* * * * *
1216896 TATAAAT-AGACTTTTCTTGCCAATGGATGGCTGTCGCTTCA-GTTTTCCTAAGGAAAACATCCT
1 TATAAATGA-ACTTTTCTTGTCAATGGATGGCTTTCACTTCATG-TTTCCTAAGGCAAACATCCA
* ** *
1216959 ATTATGATCTATTTTAAGTGA-AAATGAAAAAAAAATT-AACTTAAAATCATTTATCAGATTATA
64 ATTATGATATATTTTAA-CCATAAATG-AAAAAAAATTCAACTTAAAATCA-TTATAAGATTATA
* * * * * *
1217022 AAGA-AATTAAAGCAAGTAACTAGGCTTTCGAGA-CATGAGTGACTATAAATGAACTTTTCCTAT
126 AA-ACATTTAAAGCGAGTAACTAGGCTTTCGAGAGCATGAGTGAATATAAATGGACTTTTCTTCT
* **
1217085 CAATAGATGACTTTTGCTTCATATTT-TCTGAGGCAAACATCCAATTATGATTTGCTTTAACAAA
190 CAATAGATGAC-TTTGCTTCATATTTCT-TGAGGCAAACATCCAATTATGATTTGTTTTAACCTA
* ** * *
1217149 AAATGAAAACAAACTCAACCTAAAATCATTTATAAAATTATAAA-ACCGTTAAAGCAAGTAACTA
253 AAATGAAAA-AATC-CAATTTAAAATCATTTAT-AAATTATAAACA-C-TTAAAG-TAGTAACAA
*
1217213 GGCTTTCGAAAGCATGAGTAAC
312 GGCTTTC-AAAGCATGAGTGAC
* * * ** * *
1217235 CATAAATGGACTTTTCTTGTCAAGGGATGAATTTCACTTCATGTATCCCT-AGGCAAACATCTAA
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGT-TTCCTAAGGCAAACATCCAA
* * * * *
1217299 TTAGGATATATTTTAACCATATATGAAATAAAATTCAACTTAAATTCATTATGAG-TTGATAAAA
65 TTATGATATATTTTAACCATAAATGAAAAAAAATTCAACTTAAAATCATTATAAGATT-ATAAAA
* * * * *
1217363 TCATTTAAAGCGAGTAACTAGGTTTTCAAAAGTATGAGTGAATATAAATGGACTTTTCTTCTGAA
129 -CATTTAAAGCGAGTAACTAGGCTTTCGAGAGCATGAGTGAATATAAATGGACTTTTCTTCTCAA
* * * * * *
1217428 TAGATGGCTTTCGCTTCATGTTTCTTGAGCCAAACACCCAATTATGGTCTGTTTTAACCTAAAAT
193 TAGATGACTTT-GCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAAAT
* *
1217493 GAAATAATCCAATTTAAAATCATTTATACCATTATACAACGACTTAAA-TAGGCTAACAAGGCTT
257 GAAAAAATCCAATTTAAAATCATTTATA-AATTATA-AAC-ACTTAAAGTA-G-TAACAAGGCTT
*
1217557 TCAAACACATGAGTGAC
317 TCAAA-GCATGAGTGAC
* * *
1217574 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTTCTAAGGCAAACATCCCAT
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * * * * *
1217639 TATGATCTGTTTTAACCCA-AAAAGAAAAACAATTCATCTTAAAATTATTTATAA-ATTTACAAA
66 TATGATATATTTTAA-CCATAAATGAAAAAAAATTCAACTTAAAATCA-TTATAAGA-TTATAAA
* * * * * * * * *
1217702 ACCTCTAAATGTGAGTAA-GATGGTTTTCGA-AGGCATGAGTGACTATAAATAGAGTTATT-TTA
128 ACATTTAAA-GCGAGTAACTA-GGCTTTCGAGA-GCATGAGTGAATATAAATGGACTT-TTCTTC
* * * * * * * * * *
1217764 TCAATGGAT-AGTTTTCACTTCATGTTTCTAGAGGCAAATATCTAATTAAGATCT-ATTTAACC-
189 TCAATAGATGA-CTTT-GCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCT
* * * * * *
1217826 AAAAGTGACAAACAATTCAATTTAAAATTATTTATGAGATTATAAAACCATTTAAAGCAAGTAAG
252 AAAA-TGA-AAA-AATCCAATTTAAAATCATTTAT-AAATTAT-AAA-CACTTAAAG-TAGTAAC
* *
1217891 AAGGCTTTCAAAGGCAAT-AATGGC
310 AAGGCTTTCAAA-GC-ATGAGTGAC
* * * * * * ** * * *
1217915 TATAAATGGACTTTTTTTATTAATGGATTGCTTTCGCTTCACATTTCCCAATGCAAACATCAAAT
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTAAGGCAAACATCCAAT
* * * ** * * *
1217980 GATAATCTATTTTAAAGAAAAATGAAAAAAAATTCAATTTAAAATCATTTGTAA-AGTTATAAAA
66 TATGATATATTTTAACCATAAATGAAAAAAAATTCAACTTAAAATCA-TTATAAGA-TTATAAAA
* * * * * * * * * *
1218044 CCATTGAAAGTGA-TAAGTAATGCTTTTGA-AGGTATGAATGACTATAAAAGGAGC-TTTCTTGT
129 -CATTTAAAGCGAGTAACT-AGGCTTTCGAGA-GCATGAGTGAATATAAATGGA-CTTTTCTTCT
* * * * * ** ** * *
1218106 CAATGGATGGCTTTCACTTCACATTTCTCGAGATAAACATCTTATTATCATTTGTTTGAA-CTAA
190 CAATAGATGACTTT-GCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCT-A
* * * * * * * ** *
1218170 AAATTAAAAAAAAAT-CAACTTAAAGTAATTTATGAGATTCTAAACAATTTAAACCAAGTAACTA
253 AAA-T--GAAAAAATCCAATTTAAAATCATTTAT-AAATTATAAAC-ACTTAAA-GTAGTAACAA
* * *
1218234 GGC-TTCGAAGGCTTAAGTGAC
312 GGCTTTC-AAAGCATGAGTGAC
* * * ** * ** **
1218255 TATAAATGGACTTTTTTTGTCAATGGATAGCTTTCACTTCACATTT-CTCGAGATAAACATCTTA
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCT-AAGGCAAACATCCAA
* * * * * * * * * * * *
1218319 TTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT-AAA
65 TTATGATATATTTTAACCATAAATGAAAAAAAATTCAACTTAAAATCA-TTATAAGATTATAAAA
* * * * * *
1218383 CAATTTAAACCAAGTAACTAGGC-TTCGA-AGGCTTAAGTGACTATAAATGGACTTTTCTTGTCA
129 C-ATTTAAAGCGAGTAACTAGGCTTTCGAGA-GCATGAGTGAATATAAATGGACTTTTCTTCTCA
* * * * * ** * *
1218446 GTGGATGGCTTTTGCTTTACATTTCTCAAGGCAAACATCCAATTATGATTTGCTTTAACCAAAAA
192 ATAGATGAC-TTTGCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAAA
* * * * * * *
1218511 TGAAAAAAAAACTGAATCTAAAATCATTTATAAGATTATGAAACCATTTAAAGCAACTAACTAGG
256 TG--AAAAAATC-CAATTTAAAATCATTTATAA-ATTAT-AAA-CACTTAAAG-TAGTAACAAGG
* ** *
1218576 TTTTTTAAGACATAAGTGAC
314 CTTTCAAAG-CATGAGTGAC
* * *
1218596 TATAAATGGACTTTTCTTGTCAAGGGATAGCTTT
1 TATAAATGAACTTTTCTTGTCAATGGATGGCTTT
1218630 TGTAATGACC
Statistics
Matches: 2662, Mismatches: 591, Indels: 360
0.74 0.16 0.10
Matches are distributed among these distances:
334 7 0.00
335 68 0.03
336 90 0.03
337 113 0.04
338 173 0.06
339 710 0.27
340 599 0.23
341 446 0.17
342 157 0.06
343 95 0.04
344 112 0.04
345 90 0.03
346 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (332 bp):
TATAAATGAACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCCTAAGGCAAACATCCAAT
TATGATATATTTTAACCATAAATGAAAAAAAATTCAACTTAAAATCATTATAAGATTATAAAACA
TTTAAAGCGAGTAACTAGGCTTTCGAGAGCATGAGTGAATATAAATGGACTTTTCTTCTCAATAG
ATGACTTTGCTTCATATTTCTTGAGGCAAACATCCAATTATGATTTGTTTTAACCTAAAATGAAA
AAATCCAATTTAAAATCATTTATAAATTATAAACACTTAAAGTAGTAACAAGGCTTTCAAAGCAT
GAGTGAC
Found at i:1218361 original size:169 final size:169
Alignment explanation
Indices: 1218082--1218629 Score: 751
Period size: 169 Copynumber: 3.2 Consensus size: 169
1218072 AAGGTATGAA
* *
1218082 TGACTATAAAAGGAGC-TTTCTTGTCAATGGATGGCTTTCACTTCACATTTCTCGAGATAAACAT
1 TGACTATAAATGGA-CTTTTCTTGTCAATGGATAGCTTTCACTTCACATTTCTCGAGATAAACAT
1218146 CTTATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT
65 CTTATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCT
1218211 AAACAATTTAAACCAAGTAACTAGGCTTCGAAGGCTTAAG
130 AAACAATTTAAACCAAGTAACTAGGCTTCGAAGGCTTAAG
*
1218251 TGACTATAAATGGACTTTTTTTGTCAATGGATAGCTTTCACTTCACATTTCTCGAGATAAACATC
1 TGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCACATTTCTCGAGATAAACATC
1218316 TTATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCTA
66 TTATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCTA
1218381 AACAATTTAAACCAAGTAACTAGGCTTCGAAGGCTTAAG
131 AACAATTTAAACCAAGTAACTAGGCTTCGAAGGCTTAAG
* * ** * * **
1218420 TGACTATAAATGGACTTTTCTTGTCAGTGGATGGCTTTTGCTTTACATTTCTCAAGGCAAACATC
1 TGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCACATTTCTCGAGATAAACATC
** * * * * * * *
1218485 CAATTATGATTTGCTTT-AACCAAAAATGAAAAAAAAACTGAA-TCTAAAATCATTTATAAGATT
66 TTATTATCATTTG-TTTGAACTAAAAATTAAAAAAAAA-TCAACT-TAAAGTAATTTATGAGATT
* * * * * ** * *
1218548 ATGAAACCATTTAAAGCAACTAACTAGGTTTTTTAAGACATAAG
128 CT-AAACAATTTAAACCAAGTAACTAGG-CTTCGAAGGCTTAAG
*
1218592 TGACTATAAATGGACTTTTCTTGTCAAGGGATAGCTTT
1 TGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTT
1218630 TGTAATGACC
Statistics
Matches: 340, Mismatches: 33, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
168 1 0.00
169 249 0.73
170 23 0.07
171 22 0.06
172 45 0.13
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
TGACTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCACATTTCTCGAGATAAACATC
TTATTATCATTTGTTTGAACTAAAAATTAAAAAAAAATCAACTTAAAGTAATTTATGAGATTCTA
AACAATTTAAACCAAGTAACTAGGCTTCGAAGGCTTAAG
Found at i:1219702 original size:25 final size:25
Alignment explanation
Indices: 1219674--1219721 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
1219664 CTGGTTGCAA
**
1219674 CCACATATATCAACTTGTGGCCTAG
1 CCACATATATCAACCCGTGGCCTAG
1219699 CCACATATATCAACCCGTGGCCT
1 CCACATATATCAACCCGTGGCCT
1219722 TGTCATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (25 bp):
CCACATATATCAACCCGTGGCCTAG
Found at i:1221109 original size:21 final size:21
Alignment explanation
Indices: 1221085--1221127 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1221075 CCTCCAAGCC
*
1221085 TTTTTCTTCTTTCTCCTTTCT
1 TTTTTCTTCTCTCTCCTTTCT
*
1221106 TTTTTCTTCTCTCTTCTTTCT
1 TTTTTCTTCTCTCTCCTTTCT
1221127 T
1 T
1221128 CCCTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTTCTTCTCTCTCCTTTCT
Found at i:1221111 original size:7 final size:7
Alignment explanation
Indices: 1221087--1221128 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
1221077 TCCAAGCCTT
1221087 TTTCTTC
1 TTTCTTC
*
1221094 TTTCTCC
1 TTTCTTC
*
1221101 TTTCTTT
1 TTTCTTC
1221108 TTTCTTC
1 TTTCTTC
*
1221115 TCTCTTC
1 TTTCTTC
1221122 TTTCTTC
1 TTTCTTC
1221129 CCTTTTTTGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTCTTC
Found at i:1225711 original size:14 final size:15
Alignment explanation
Indices: 1225692--1225720 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1225682 AATCATCCTT
1225692 GTCCTT-CTCATCTA
1 GTCCTTCCTCATCTA
1225706 GTCCTTCCTCATCTA
1 GTCCTTCCTCATCTA
1225721 TTATATTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.38, G:0.07, T:0.41
Consensus pattern (15 bp):
GTCCTTCCTCATCTA
Found at i:1228766 original size:21 final size:21
Alignment explanation
Indices: 1228741--1228781 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1228731 CTACAAGCCT
1228741 TTTTCTTCTATCTCCTTTCTC
1 TTTTCTTCTATCTCCTTTCTC
* *
1228762 TTTTCTTCTCTCTGCTTTCT
1 TTTTCTTCTATCTCCTTTCT
1228782 TCCCTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTCTTCTATCTCCTTTCTC
Found at i:1229369 original size:17 final size:17
Alignment explanation
Indices: 1229347--1229380 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1229337 TTTGCATCTA
1229347 ACATAACCTAGCTTTCC
1 ACATAACCTAGCTTTCC
1229364 ACATAACCTAGCTTTCC
1 ACATAACCTAGCTTTCC
1229381 TTTTTTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.06, T:0.29
Consensus pattern (17 bp):
ACATAACCTAGCTTTCC
Found at i:1230268 original size:171 final size:169
Alignment explanation
Indices: 1230016--1234094 Score: 2244
Period size: 171 Copynumber: 24.0 Consensus size: 169
1230006 AATGAAGCAG
* * * ** * * * * *
1230016 AATTTAACTTAAACTCATTT-TGAGATTATAAAATTATTTAAAACTAGTAGCTAGGCTTTCGAAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
* * * ** **
1230080 GCATGAGTGATTATAAATGGACTTTTCTTCTCAATAGACAGCTTTTGCTTCATGTTTCCCAAGGT
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGT
** *
1230145 AAACATTTAATTATGATTTGTTTCAACCTAAAAAGAAAAAA
130 AAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAAAA
* * * * ** *
1230186 AATTTATCTTAAAATCATTTATAA-AGTTATAAAACCACTTAATGTTAGTAA-TAAGGTTTTTAA
1 AATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACT-AGGTTTTGAA
* * * **
1230249 GGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAG-TTTTCGCTTCACTGTTT-AGA
64 -GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCA-TGTTTCTTA
* ** * *
1230312 AGGTAAACATCCAATTATGATCTACTTTAAGCGAAAATGAAAAAA
126 AGGTAAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAAAA
* * *
1230357 AA-TCAACTTAAAATAATTTATAAGATTATAAAGA--AATTAAAGCGAGTAACTAGGCTTTCG-A
1 AATTCAACTTAAAATCATTTATAAGATTATAAA-ACCATTTAAAGCGAGTAACTAGG-TTTTGAA
* * * ** *
1230418 GGCTTGAGTGAGTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCTAAGG
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGG
** *
1230483 TAAACATCCAATTATGATTTACTCTAACAAAAAATAAAAA-AGAAAAA
129 TAAACATCCAATTATGATTTGTTTTAAC------TAAAAAGA-AAAAA
* * * ** ** * *
1230530 AACTCAACTTAAAATCATTTATAAGTTTATAAAATCGCTTAAAGTAAGCAACTAGGGTTTCGAAG
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTA-GGTTTTGAAG
* * *** * ** ** *
1230595 GCATGAGTGACCACAAACATACTTTTCTTGTCAAAGG-TGGCTTTTGCTTCACATTTCCCAAGGC
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGT
* * * * * *
1230659 AAACATCTAA-TATG-TCCTGTCTTAACCATAAATGAAACAA
130 AAACATCCAATTATGAT-TTGTTTTAACTA-AAAAGAAAAAA
* * * * * * ** *
1230699 AATTCAACTTAAACTTA-TTATGAGATTGTAAAACTATTTAAAGCGAATAACTAGGCTTTCAAAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
** * * * *** *
1230763 ATATGAGTGAATATAAATGGACCTTTT-TTATAAATGGATGGCTTTCATTTCATGTTTCTTGAGG
65 GCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGG
* * * *
1230827 TAAACATCTAATTATGATATGTTTTAACCTAAAATGAACAAA
129 TAAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAAAA
* * ** * ** * * *
1230869 AATT-AATTTAAAATCATTTATAACG-TTATACAATGACTTAAATAGACTAA-TAAAGATTTCGA
1 AATTCAACTTAAAATCATTTATAA-GATTATAAAACCATTTAAAGCGAGTAACT--AGGTTTTGA
* * * * ** * *
1230931 AGGCATAAGTGACTATAAATGCACTTTTCTTGTTAATAGATGGCTTTCACTTCAATGTTTATCAA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTC-ATGTTTCTTAA
** **
1230996 GACAAACATCCAATTATGAGATGTTTTAACTAAAAATGAAAAAAAA
127 GGTAAACATCCAATTATGATTTGTTTTAACTAAAAA-G--AAAAAA
* * * *
1231042 AACTT-ATCTTAAAATCATTTATAA-AGTTATAAAACCACTAAAAGTC-AGTAAC-ATGGCTTTC
1 AA-TTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAG-CGAGTAACTA-GG-TTTT
* * * ** *
1231103 GAAGGCATGAGTGACTATAAACGGAATTCTCTTGTTGATGGATGGCTTTTGCTTGACAT-TTT-A
61 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTT--CATGTTTCT
* * * * ***
1231166 GAAGGAAAACATCTAATTATGATTTGTTTTAACAAAAAATGAAAGCC
124 TAAGGTAAACATCCAATTATGATTTGTTTTAACTAAAAA-GAAAAAA
* * * * * *
1231213 AATTCAACTTAAAATTATTTATGAGATTATAAAACTATTTAAAAC-AGGTAACTAGACTTTCGAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA-GTAACTAG-GTTTTGAA
* * * * * **
1231277 GGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGATGCCTTTCGCTTCACGTTTCCTAATC
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGG
* * * ** **
1231342 CAAACATCAAATTATAACCTAATTTAA-TGAAAAATG-AAAAA
129 TAAACATCCAATTATGATTTGTTTTAACT-AAAAA-GAAAAAA
* * * * * * *
1231383 AATT-AATTTTAAATCATTTATAA-AGTTATAAAACCATTGAAAGCCA-AAAGCAAGGCTTTCGA
1 AATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAA-CTAGG-TTTTGA
* * * * ** *
1231445 AGGTATGAATGACCATAAAAGGAGC-TTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCAA
63 AGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAA
* * * * *
1231509 GGAAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAAA
127 GGTAAACATCCAATTATGATTTGTTTTAACTAAAAAGAAAAAA
* * * ** * *
1231552 AATTCAACTTAAAATAATTTATGAGATTCTAAAATAATTTAAAGCGAGTAACTGGGCTTTTGAAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
* * * *
1231617 G-ATTGAGTGACTATAAATAGAC-TTTCTTGTTAATGGATGGCTTTTGCTTCACT-TTTTTTGAG
65 GCA-TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTAAG
* * * ** * *
1231679 GTGAACATCTAATTATGTTTTACTTTAACCAAAAATAAAAAAGCA
128 GTAAACATCCAATTATGATTTGTTTTAACTAAAAA-GAAAAA--A
* * * * * * * **
1231724 AACTCAACCTAAAATCTTTTATAATATTATAAAACCGTTTAAAGCAAGTAACTAGGCCTTCAAAG
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
* * * * * ** ** * *
1231789 ACATGAGTGACTATAAATAGACTTTTCTTGTCAAGGGATGCCTTTCGCACCACATTTCCTAAGCT
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGT
* * * **
1231854 AAACATCTAATTATGATCTGTTTTACAATAAAACCAAAAAA
130 AAACATCCAATTATGATTTGTTTTA-ACTAAAAAGAAAAAA
* * * ** * * *
1231895 TA-TCAACTTAAACTCA-TTATGAGATTATAAAACCATTTAAAATGAGTAACTAGGCTATTAAAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
* * * * * * * * *
1231958 GCATGAATGATTATAAATAGATTTTTCTTCTCAATAGATAGCTTTTGCTTCATGTTTTTTGAGGT
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGT
* *
1232023 AAACATTCAATTATGATTTGTTTTAACATAAAATGAAAAAAA
130 AAACATCCAATTATGATTTGTTTTAAC-TAAAAAG-AAAAAA
* * * * *
1232065 AATT-ATCTTAAAATCATTTAT-AGAGTTATAAAACCACTTAAAGCTACTAA-TAAGCTTTTTGA
1 AATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACT-AG-GTTTTGA
** ** *
1232127 CTGCATGAGTGACTATAAACAGACTTTTCTTG-CTAATGGATGGCTTTTGCTTCACT-TTTCTTT
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCA-TGTTTCTTA
* * * * *
1232190 AGGCAAACATCCAATTATGATTTATTTTAAGTGAAAATGAAAAAC
126 AGGTAAACATCCAATTATGATTTGTTTTAACT-AAAAAGAAAAAA
* * * *
1232235 AATTTAACTTGAAATCATTTA-AGAGATTATAAAGA--AATTAAAGCGAGTAATTAGGCTTTTG-
1 AATTCAACTTAAAATCATTTATA-AGATTATAAA-ACCATTTAAAGCGAGTAACTAGG-TTTTGA
* * ** * * ** *
1232296 AGGCATAAGTGACTGTAAATTAACTTTTCCTATCAATGGATGGCTTTTGCTTCACATTTCTTAAA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAG
* * *
1232361 GAAAACATCCAATTATGACTTGTTTTAA-TAAAAAATAAAAAAA
128 GTAAACATCCAATTATGATTTGTTTTAACT-AAAAA-GAAAAAA
* * *
1232404 AACTCAACGTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTGAAG
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
* * * * * * **
1232469 ACATAAGTGACCATAAATGGACTTTTGTTGTCAA-GAGATAGCTTTTGCTTCACTTTTTCCCAA-
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATG-GATGGCTTTTGCTTCA-TGTTTCTTAAG
* * ** * * *
1232532 GAAAATATATAATTATGATATGTTTTAACCATAAAACGAAACAA
128 GTAAACATCCAATTATGATTTGTTTTAA-C-TAAAAAGAAAAAA
* ** * *
1232576 AATTCAACTTAAAATCA-TTATGAGATTATAAAACCATTTAAAATGAGTAACTAGGCTTTTAAAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGAAG
** * * * * * **
1232640 GCACAAGTGATTAAAAATAGACTTTTCTTCTCAACGGATGGCTTTTGCTTCATGTTTCTTGCGGT
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGT
* * *
1232705 AAACATTCAATTATGATTTGTTTCAACCTAAAATGAAAATAA
130 AAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAA-AA
* * ** * *
1232747 AATT-ATCTTAAAATAATTTAT-AGAGTTATAAAACCGCTTAAAGCTAGTAA-TAAGGTTATCGA
1 AATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCGAGTAACT-AGGTT-TTGA
* * * ** * * * *
1232809 CGTCATGAGTAACTATAAACAGAATTTTCTTATCAATGGATGGCTTTCGCTTCACT-TTTCTTGA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTAA
* * * * * * *
1232873 CGCAAACATCCAATTATTATTTTTTTTAAGTGAAAATGATAAAA
127 GGTAAACATCCAATTATGATTTGTTTTAACT-AAAAAGAAAAAA
* * * * * *
1232917 AATTTAACTTAAAATCATTTATGAGATTGTAAAGA--AATTAAAGCGAGTAATTAGGCTTTCG-A
1 AATTCAACTTAAAATCATTTATAAGATTATAAA-ACCATTTAAAGCGAGTAACTAGG-TTTTGAA
* * ** * * ** * *
1232979 GGCATAAATGACTATAAATTAACATTTCTTG-CTAATGGATGGCTTTTGCTCCACATTTCCTAAA
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGCTTCATGTTTCTTAAG
* * **
1233043 GAAAACATCCAATTATGACTTACTTTAA-TAAAATATGAAGAAAAAA
128 GTAAACATCCAATTATGATTTGTTTTAACT--AA-A--AAGAAAAAA
* * * * * *
1233089 AAGCTCAACCTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGACTTTCGAA
1 AA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAG-GTTTTGAA
* * * * **
1233154 GGCATGAGTGACCATAAATGGACTTTTGTTGTCAAGGGATGGCTTTCGCTTCACT-TTTCCCCAA
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCA-TGTTT-CTTAA
* * * * * * * *
1233218 -GAAAACATCTACTTATGATATGTTTTAACCATAAATGAAATAG
127 GGTAAACATCCAATTATGATTTGTTTTAACTA-AAAAGAAAAAA
* * * * * * * *
1233261 AATTAAACTTAAACTCA-TTATGATATTAGAAAACCATTTAAAGTGAGTAAGTAGACTTTTGCAA
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAG-GTTTTG-AA
* * *
1233325 -GTATGAGTGAATATAAATGGACTTTTCTTGTGAATGGAT-G-----G---C---TTTCTTAAGG
64 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGG
* * * * *
1233377 AAAACATCCAATTATGATCTATTTTAACCTGAAATG--AAAA
129 TAAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAAAA
* * * * ** * ** * * * * *
1233417 TA-TCAATTTAAAATCATTTATAAGGTTATACAATGACTTAAATAGACTGACAAGGCTTTCAGAG
1 AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGTTTTGA-AG
* * * * **
1233481 GTATGAGTGACCATAAATAGACTTTTCTTGTCAATGGATGGC-TTCGCTTCATGTTT-TCTAAAA
65 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT-TAAGG
* * * * * *
1233544 CAAATAGT-GAATTATGATCTATTTTAAGTAAAAAAGAAAAAA
129 TAAACA-TCCAATTATGATTTGTTTTAACT-AAAAAGAAAAAA
* * * *
1233586 AATT-AACTTAAAATCATTTATGAGACTATAACGAA--A-TTAAAACAAGTAACTAGGCTTTTG-
1 AATTCAACTTAAAATCATTTATAAGATTATAA--AACCATTTAAAGCGAGTAACTAGG-TTTTGA
* * * * * ** ** ** * *
1233646 AGGCATGAGTGATTCTAAATAGACTTGTCTTATCAATAAATGGCTTTCACTTCACATATCTCAAG
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAG
* * **
1233711 GTAAACATCTAATTATGAATTAATTTAA-TGAAAAA-AGAAAAA
128 GTAAACATCCAATTATGATTTGTTTTAACT-AAAAAGA-AAAAA
* * ** * *
1233753 AATTC-AGTCTAAAATCATTTATAAAGCTT-TAAAACCCCTTAAAGCGAGTAACAAGCTTTTCGA
1 AATTCAACT-TAAAATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAACTAGGTTTT-GA
* * * * * * * * *
1233816 AGGTATGGGTGACTACAAATGGGCTTTTCTTATCAATTGATGTCTTTTCCTTCACGTCTT-TTAA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGT-TTCTTAA
* * * * * * *
1233880 GGCAGACATCTAATTATGATCTGATTTAACAAAAAATGAAAAAG
127 GGTAAACATCCAATTATGATTTGTTTTAACTAAAAA-GAAAAAA
* * * * * **
1233924 AATTCAGCATAAACA-CATTTATGAA-ATTATAAAACTATTTAAAGTGAGTAATTAGGCTTTCAA
1 AATTCAACTTAAA-ATCATTTAT-AAGATTATAAAACCATTTAAAGCGAGTAACTAGG-TTTTGA
* * * * * **
1233987 AAGCATGAATGATTATAAGTGGACTTTTCTTGTCAATGTATGGCTTTTAG-TTCATGTTTCCCAA
63 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTAA
* * **
1234051 GGTAAACAT-CAATTATGATCTATTTTAACCTAAAATTAAAAAA
127 GGTAAACATCCAATTATGATTTGTTTTAA-CTAAAAAGAAAAAA
1234094 A
1 A
1234095 TTTAATTCAA
Statistics
Matches: 3003, Mismatches: 721, Indels: 370
0.73 0.18 0.09
Matches are distributed among these distances:
154 1 0.00
155 15 0.00
156 61 0.02
157 4 0.00
158 32 0.01
159 1 0.00
161 2 0.00
164 2 0.00
166 5 0.00
167 92 0.03
168 199 0.07
169 619 0.21
170 545 0.18
171 831 0.28
172 138 0.05
173 141 0.05
174 154 0.05
175 122 0.04
176 39 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGGTTTTGAAGG
CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGTA
AACATCCAATTATGATTTGTTTTAACTAAAAAGAAAAAA
Found at i:1231311 original size:683 final size:680
Alignment explanation
Indices: 1230005--1231336 Score: 1452
Period size: 683 Copynumber: 1.9 Consensus size: 680
1229995 TTTTATCATA
* * * * * * * *
1230005 AAATGAAGCAGAATTTAACTTAAACTCATTTTGAGATTATAAAATTATTTAAAACTAGTAGCTAG
1 AAATGAAACAAAATTCAACTTAAACTCATTATGAGATTATAAAACTATTTAAAACGAATAACTAG
* * * * * **
1230070 GCTTTCGAAAGCATGAGTGATTATAAATGGACTTTTCTTCTCAATAGACAGCTTTTGCTTCATGT
66 GCTTTCAAAAACATGAGTGAATATAAATGGACTTTTCTTATAAATAGACAGCTTTCACTTCATGT
* * *
1230135 TTCCCAAGGTAAACATTTAATTATGATTTGTTTCAACCTAAAAAGAAAAAAAATTTATCTTAAAA
131 TTCCCAAGGTAAACATCTAATTATGATATGTTTCAACCTAAAAAGAAAAAAAATTAATCTTAAAA
* * ** *
1230200 TCATTTATAAAGTTATAAAACCACTTAATGTTAGTAATAAGGTTTTTAAGGGCATGAGTGACTAT
196 TCATTTATAAAGTTATAAAACCACTTAATG-TACTAATAAGATTTCGAAGGGCATAAGTGACTAT
* * * * * **
1230265 AAATAGACTTTTCTTATCAATGGATAGTTTTCGCTTCACTGTTTAGAAGGTAAACATCCAATTAT
260 AAATAGACTTTTCTTATCAATAGATAGCTTTCACTTCAATGTTTACAAGACAAACATCCAATTAT
** * *
1230330 GATCTACTTTAAGCGAAAATGAAAAAAAATCAACTTAAAATAATTTATAAGATTATAAAGAAATT
325 GAGATACTTTAAGCAAAAATGAAAAAAAATCAACTTAAAATAATTTATAAGATTATAAAGAAATA
* * * *
1230395 AAAGCGAGTAACTAGGCTTTCGAGGCTTGAGTGAGTATAAATGAACTTTTCTTGTCAATGGATGG
390 AAAGCGAGTAACTAGGCTTTCGAGGCATGAGTGACTATAAAGGAACTTCTCTTGTCAATGGATGG
** *
1230460 CTTTTGCTTCACATTTCCTAAGGTAAACATCCAATTATGATTTACTCTAACAAAAAATAAAAAAG
455 CTTTTGCTTCACATTTCAGAAGGAAAACATCCAATTATGATTTACTCTAACAAAAAAT-AAAAAG
* * ** **
1230525 AAAAAAACTCAACTTAAAATCATTTATAAGTTTATAAAATCGCTTAAAGTAAGCAACTAGGGTTT
519 --AAAAACTCAACTTAAAATCATTTATAAGATTATAAAATCACTTAAAACAAGCAACTAGACTTT
* * * *
1230590 CGAAGGCATGAGTGACCACAAACATACTTTTCTTGTCAAAGG-TGGCTTTTGCTTCACATTTCCC
582 CGAAGGCATGAGTGACCACAAACAGACTTTTATTGTCAAAGGATGCCTTTCGCTTCACATTTCCC
1230654 AAGGCAAACATCTAATATGTCCTGTCTTAACCAT
647 AAGGCAAACATCTAATATGTCCTGTCTTAACCAT
* * *
1230688 AAATGAAACAAAATTCAACTTAAACTTATTATGAGATTGTAAAACTATTTAAAGCGAATAACTAG
1 AAATGAAACAAAATTCAACTTAAACTCATTATGAGATTATAAAACTATTTAAAACGAATAACTAG
* * ** *
1230753 GCTTTCAAAAATATGAGTGAATATAAATGGACCTTTT-TTATAAATGGATGGCTTTCATTTCATG
66 GCTTTCAAAAACATGAGTGAATATAAATGGA-CTTTTCTTATAAATAGACAGCTTTCACTTCATG
*** * * *
1230817 TTTCTTGAGGTAAACATCTAATTATGATATGTTTTAACCTAAAATGAACAAAAATTAAT-TTAAA
130 TTTCCCAAGGTAAACATCTAATTATGATATGTTTCAACCTAAAAAGAAAAAAAATTAATCTTAAA
* * **
1230881 ATCATTTATAACGTTATACAATGACTTAAATAG-ACTAATAAAGATTTCGAA-GGCATAAGTGAC
195 ATCATTTATAAAGTTATAAAACCACTT-AAT-GTACTAAT-AAGATTTCGAAGGGCATAAGTGAC
* * *
1230944 TATAAAT-GCACTTTTCTTGTTAATAGATGGCTTTCACTTCAATGTTTATCAAGACAAACATCCA
257 TATAAATAG-ACTTTTCTTATCAATAGATAGCTTTCACTTCAATGTTTA-CAAGACAAACATCCA
** * * *
1231008 ATTATGAGATGTTTTAA-CTAAAAATGAAAAAAAAAACTTATCTTAAAATCATTTATAA-AGTTA
320 ATTATGAGATACTTTAAGC-AAAAATG--AAAAAAAA-TCAACTTAAAATAATTTATAAGA-TTA
*
1231071 TAAA-ACCACTAAAAGTC-AGTAAC-ATGGCTTTCGAAGGCATGAGTGACTATAAACGGAA-TTC
380 TAAAGA--AATAAAAG-CGAGTAACTA-GGCTTTCG-AGGCATGAGTGACTATAAA-GGAACTTC
** * * * ** *
1231132 TCTTGTTGATGGATGGCTTTTGCTTGACATTTTAGAAGGAAAACATCTAATTATGATTTGTTTTA
439 TCTTGTCAATGGATGGCTTTTGCTTCACATTTCAGAAGGAAAACATCCAATTATGATTTACTCTA
* ** * * * *
1231197 ACAAAAAAT-GAAAG-CCAATTCAACTTAAAATTATTTATGAGATTATAAAA-CTATTTAAAACA
504 ACAAAAAATAAAAAGAAAAACTCAACTTAAAATCATTTATAAGATTATAAAATC-ACTTAAAACA
* * * * ** *
1231259 GGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGATGCCTTTC
568 AGCAACTAGACTTTCGAAGGCATGAGTGACCACAAACAGACTTTTATTGTCAAAGGATGCCTTTC
*
1231324 GCTTCACGTTTCC
633 GCTTCACATTTCC
1231337 TAATCCAAAC
Statistics
Matches: 529, Mismatches: 101, Indels: 37
0.79 0.15 0.06
Matches are distributed among these distances:
681 1 0.00
682 85 0.16
683 273 0.52
684 24 0.05
685 10 0.02
686 30 0.06
687 20 0.04
688 83 0.16
689 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (680 bp):
AAATGAAACAAAATTCAACTTAAACTCATTATGAGATTATAAAACTATTTAAAACGAATAACTAG
GCTTTCAAAAACATGAGTGAATATAAATGGACTTTTCTTATAAATAGACAGCTTTCACTTCATGT
TTCCCAAGGTAAACATCTAATTATGATATGTTTCAACCTAAAAAGAAAAAAAATTAATCTTAAAA
TCATTTATAAAGTTATAAAACCACTTAATGTACTAATAAGATTTCGAAGGGCATAAGTGACTATA
AATAGACTTTTCTTATCAATAGATAGCTTTCACTTCAATGTTTACAAGACAAACATCCAATTATG
AGATACTTTAAGCAAAAATGAAAAAAAATCAACTTAAAATAATTTATAAGATTATAAAGAAATAA
AAGCGAGTAACTAGGCTTTCGAGGCATGAGTGACTATAAAGGAACTTCTCTTGTCAATGGATGGC
TTTTGCTTCACATTTCAGAAGGAAAACATCCAATTATGATTTACTCTAACAAAAAATAAAAAGAA
AAACTCAACTTAAAATCATTTATAAGATTATAAAATCACTTAAAACAAGCAACTAGACTTTCGAA
GGCATGAGTGACCACAAACAGACTTTTATTGTCAAAGGATGCCTTTCGCTTCACATTTCCCAAGG
CAAACATCTAATATGTCCTGTCTTAACCAT
Found at i:1231513 original size:340 final size:342
Alignment explanation
Indices: 1230795--1234033 Score: 1341
Period size: 340 Copynumber: 9.5 Consensus size: 342
1230785 CTTTTTTATA
* ** * **
1230795 AATGGATGGCTTTCATTTCATGTTTCTTGAGGTAAACATCTAATTATGATATGTTTTAACCTAAA
1 AATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAAAA
* * * * * * * *
1230860 ATGAACAAAAATT-AATTTAAAATCATTTATAACG-TTATACAATGACTT-AAATAGACTAA-TA
66 ATGAA-AAAAATTCAACTTAAAATAATTTATGA-GATTATAAAATAATTTAAAACAGAGTAACT-
* * * *
1230921 AAGA-TTTCGAAGGCATAAGTGACTATAAATGCACTTTTCTTGTTAATAGATGGCTTTCACTTCA
128 -AGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTC-
* * * * **
1230985 ATGTTTATCAAGACAAACATCCAATTATGAGATGTTTTAACTAAAAATGAAAAAAAAAACTTATC
191 ACGTTTATCAAGACAAACATCAAATTATAACATAATTTAACTAAAAATG--AAAAAAAACTTATC
* * * *
1231050 TTAAAATCATTTATAAAGTTATAAAACCACTAAAAGTCAGTAACATGGCTTTCGAAGGCATGAGT
254 TTAAAATCATTTATAAAGTTATAAAACCACTAAAAGCCAGAAACAAGGCTTTCGAAGGCATGAAT
* * *
1231115 GACTATAAACGGAATTCTCTTGTT
319 GACCATAAAAGGAATTCTCTTGTC
* ** ** *
1231139 GATGGATGGCTTTTGCTTGACAT-TTT-AGAAGGAAAACATCTAATTATGATTTGTTTTAACAAA
1 AATGGATGGCTTTCACTT--CATGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAA
** *
1231202 AAATGAAAGCCAATTCAACTTAAAATTATTTATGAGATTATAAAACT-ATTTAAAACAG-GTAAC
64 AAATGAAA-AAAATTCAACTTAAAATAATTTATGAGATTATAAAA-TAATTTAAAACAGAGTAAC
* * *
1231265 TAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGATGCCTTTCGCTTCA
127 TAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCA
* ** *
1231330 CGTTT-CCTAATCCAAACATCAAATTATAACCTAATTTAA-TGAAAAATG-AAAAAAA-TTAAT-
192 CGTTTATC-AAGACAAACATCAAATTATAACATAATTTAACT-AAAAATGAAAAAAAACTT-ATC
* * * *
1231390 TTTAAATCATTTATAAAGTTATAAAACCATTGAAAGCCA-AAAGCAAGGCTTTCGAAGGTATGAA
254 TTAAAATCATTTATAAAGTTATAAAACCACTAAAAGCCAGAAA-CAAGGCTTTCGAAGGCATGAA
*
1231454 TGACCATAAAAGGAGCTT-TCTTGTC
318 TGACCATAAAAGGA-ATTCTCTTGTC
* * *
1231479 AATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCCAATTATGATCTATTTTAACAAAAA
1 AATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAAAA
* * * * *
1231544 ATAAAAAAAATTCAACTTAAAATAATTTATGAGATTCTAAAATAATTTAAAGC-GAGTAACTGGG
66 ATGAAAAAAATTCAACTTAAAATAATTTATGAGATTATAAAATAATTTAAAACAGAGTAACTAGA
* * * * *
1231608 CTTTTGAAAG-ATTGAGTGACTATAAATAGAC-TTTCTTGTTAATGGATGGCTTTTGCTTCACTT
131 CTTTCGAAGGCA-TGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGT
* ** *** * **** * * * * * *
1231671 TTTTTGAGGTGAACATCTAATTATGTTTTACTTTAACCAAAAATAAAAAAGCAAACTCAACCTAA
195 TTATCAAGACAAACATCAAATTATAACATAATTTAACTAAAAATGAAAAA--AAACTTATCTTAA
* ** * * * * * * * *
1231736 AATCTTTTATAATA-TTATAAAACCGTTTAAAGCAAGTAACTAGGCCTTCAAAGACATGAGTGAC
258 AATCATTTATAA-AGTTATAAAACCACTAAAAGCCAGAAACAAGGCTTTCGAAGGCATGAATGAC
* * *
1231800 TATAAATA-GACTTTTCTTGTC
322 CATAAA-AGGAATTCTCTTGTC
* * ** * ** *
1231821 AAGGGATGCCTTTCGCACCACAT-TTCCT-AAGCTAAACATCTAATTATGATCTGTTTT-ACAAT
1 AATGGATGGCTTT--CACTTCATGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAA-
** * * ** *
1231883 AAAA-CCAAAAAATATCAACTTAAACTCA-TTATGAGATTATAAAACCATTTAAAA-TGAGTAAC
63 AAAATGAAAAAAAT-TCAACTTAAAATAATTTATGAGATTATAAAATAATTTAAAACAGAGTAAC
* * * * * * * * * * * *
1231945 TAGGCTATT-AAAAGCATGAATGATTATAAATAGATTTTTCTTCTCAATAGATAGCTTTTGCTTC
127 TAGACT-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTC
* * ** ** * ** ** *
1232009 ATGTTTTTTGAGGTAAACATTC-AATTATGATTTGTTTTAAC-ATAAAATGAAAAAAAAATTATC
191 ACGTTTATCAAGACAAACA-TCAAATTATAACATAATTTAACTA-AAAATGAAAAAAAACTTATC
* * * ** * * ** *
1232072 TTAAAATCATTTATAGAGTTATAAAACCACTTAAAGCTACTAATAA-GCTTTTTGACTGCATGAG
254 TTAAAATCATTTATAAAGTTATAAAACCACTAAAAGCCAGAAACAAGGC-TTTCGAAGGCATGAA
* * *
1232136 TGACTATAAACA-GACTTTTCTTG-C
318 TGACCATAAA-AGGAATTCTCTTGTC
** ** * * * * ***
1232160 TAATGGATGGCTTTTGCTTCACT-TTTCTTTAGGCAAACATCCAATTATGATTTATTTTAAGTGA
1 -AATGGATGGCTTTCACTTCA-TGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAA
* * * * * *
1232224 AAATGAAAAACAATTTAACTTGAAATCATTTAAGAGATTATAAAGA-AA-TTAAAGC-GAGTAAT
64 AAATGAAAAA-AATTCAACTTAAAATAATTTATGAGATTATAAA-ATAATTTAAAACAGAGTAAC
* * * * ** * * * *
1232286 TAGGCTTTTG-AGGCATAAGTGACTGTAAATTAACTTTTCCTATCAATGGATGGCTTTTGCTTCA
127 TAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCA
* * * * * * ** * * * *
1232350 CATTTCTTAAAGA-AAACATCCAATTATGACTTGTTTTAA-TAAAAAATAAAAAAAAACTCAACG
192 CGTTT-ATCAAGACAAACATCAAATTATAACATAATTTAACT-AAAAATGAAAAAAAACTTATCT
* * * * * * *
1232413 TAAAATCATTTAT-AAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTGAAGACAT-AAG
255 TAAAATCATTTATAAAG-TTATAAAACCACTAAAAGCCAGAAACAAGGCTTTCGAAGGCATGAA-
* * * *
1232476 TGACCATAAATGGACTTTTGTTGTC
318 TGACCATAAAAGGAATTCTCTTGTC
* ** * * * * *
1232501 AA-GAGATAGCTTTTGCTTCACTTTTTCCCAA-GAAAATATATAATTATGATATGTTTTAACCAT
1 AATG-GATGGCTTTCACTTCA-TGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAA-CAA
* * ** *
1232564 AAAACGAAACAAAATTCAACTTAAAATCA-TTATGAGATTATAAAACCATTTAAAA-TGAGTAAC
63 AAAATGAAA-AAAATTCAACTTAAAATAATTTATGAGATTATAAAATAATTTAAAACAGAGTAAC
* ** * ** * * * * * * *
1232627 TAGGCTTTTAAAAGCACAAGTGATTAAAAATAGACTTTTCTTCTCAACGGATGGCTTTTGCTTCA
127 TAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCA
* * *** ** * * **
1232692 TGTTTCTTGCGGTAAACATTC-AATTATGA-TTTGTTTCAACCT-AAAATGAAAATAAAA-TTAT
192 CGTTTATCAAGACAAACA-TCAAATTATAACATAATTT-AA-CTAAAAATGAAAA-AAAACTTAT
* * * * * * * * *
1232753 CTTAAAATAATTTATAGAGTTATAAAACCGCTTAAAGCTAGTAATAAGG-TTATCGACGTCATGA
253 CTTAAAATCATTTATAAAGTTATAAAACCACTAAAAGCCAGAAACAAGGCTT-TCGAAGGCATGA
* * * * *
1232817 GTAACTATAAACA-GAATTTTCTTATC
317 ATGACCATAAA-AGGAATTCTCTTGTC
* ** * * * * * * ***
1232843 AATGGATGGCTTTCGCTTCACT-TTTCTTGACGCAAACATCCAATTATTATTTTTTTTAAGTGAA
1 AATGGATGGCTTTCACTTCA-TGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAAA
* * * * *
1232907 AATGATAAAAAATTTAACTTAAAATCATTTATGAGATTGTAAAGA-AA-TTAAAGC-GAGTAATT
65 AATGA-AAAAAATTCAACTTAAAATAATTTATGAGATTATAAA-ATAATTTAAAACAGAGTAACT
* * * ** * * * *
1232969 AGGCTTTCG-AGGCATAAATGACTATAAATTAACATTTCTTGCTAATGGATGGCTTTTGCTCCAC
128 AGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCAC
* * * * * * * *
1233033 ATTTCCTAAAGA-AAACATCCAATTATGACTTACTTTAA-TAAAATATGAAGAAAAAAAAGCTCA
193 GTTT-ATCAAGACAAACATCAAATTATAACATAATTTAACTAAAA-AT---GAAAAAAAA-CTTA
* * * * * * * * *
1233096 ACCTAAAATCATTTAT-AAGATTATAAAATCATTTAAAGCAAGTAACTAGACTTTCGAAGGCATG
252 TCTTAAAATCATTTATAAAG-TTATAAAACCACTAAAAGCCAGAAACAAGGCTTTCGAAGGCATG
* * * * *
1233160 AGTGACCATAAATGGACTTTTGTTGTC
316 AATGACCATAAAAGGAATTCTCTTGTC
* * * * * *
1233187 AAGGGATGGCTTTCGCTTCACT-TTTCCCCAA-GAAAACATCTACTTATGATATGTTTTAACCAT
1 AATGGATGGCTTTCACTTCA-TGTTT-CTCAAGGAAAACATCTAATTATGATATGTTTTAACAAA
* * * * * * ** ** *
1233250 AAATGAAATAGAATTAAACTTAAACTCA-TTATGATATTAGAAAACCATTT-AAAGTGAGTAAGT
64 AAATGAAA-AAAATTCAACTTAAAATAATTTATGAGATTATAAAATAATTTAAAACAGAGTAACT
* * * *
1233313 AGACTTTTGCAA-GTATGAGTGAATATAAATGGACTTTTCTTGTGAATGGATGGC--T---TT--
128 AGACTTTCG-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCA
* * * * * * * *
1233370 C--TTA--AGGA-AAACATCCAATTATGATC-TATTTTAACCT-GAAATG-AAAATATC-AAT-T
192 CGTTTATCAAGACAAACATCAAATTAT-AACATAATTTAA-CTAAAAATGAAAAAAAACTTATCT
* * ** * * *
1233425 TAAAATCATTTATAAGGTTATACAATGACTTAAATAGACTG--ACAAGGCTTTC-AGAGGTATGA
255 TAAAATCATTTATAAAGTTATAAAACCAC-TAAA-AGCCAGAAACAAGGCTTTCGA-AGGCATGA
* * *
1233487 GTGACCATAAATA-GACTTTTCTTGTC
317 ATGACCATAAA-AGGAATTCTCTTGTC
* * * * *
1233513 AATGGATGGC-TTCGCTTCATGTTT-TCTAA--AACAA-ATAGTGAATTATGATCTATTTTAAGT
1 AATGGATGGCTTTCACTTCATGTTTCTC-AAGGAA-AACAT-CT-AATTATGATATGTTTTAA-C
* * *
1233573 AAAAAA-GAAAAAAAATT-AACTTAAAATCATTTATGAGACTATAACGA-AA-TTAAAACA-AGT
61 AAAAAATG-AAAAAAATTCAACTTAAAATAATTTATGAGATTATAA-AATAATTTAAAACAGAGT
* * * * * * * * ** *
1233633 AACTAGGCTTTTG-AGGCATGAGTGATTCTAAATAGACTTGTCTTATCAATAAATGGCTTTCACT
124 AACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCT
* * * ** * * *
1233697 TCACATATCTCAAGGTAAACATCTAATTATGAA-TTAATTTAA-TGAAAAAAG-AAAAAAA-TTC
189 TCACGTTTATCAAGACAAACATCAAATTAT-AACATAATTTAACT-AAAAATGAAAAAAAACTT-
* * * * *
1233758 AGTC-TAAAATCATTTATAAAGCTT-TAAAACCCCTTAAAGCGAGTAACAA-GCTTTTCGAAGGT
251 A-TCTTAAAATCATTTATAAAG-TTATAAAACCACTAAAAGCCAGAAACAAGGC-TTTCGAAGGC
** * * * ** * *
1233820 ATGGGTGACTACAAATGGGCTTTTCTTATC
313 ATGAATGACCATAAAAGGAATTCTCTTGTC
* * * * * * * *
1233850 AATTGATGTCTTTTC-CTTCACGTCTT-TTAAGGCAGACATCTAATTATGATCTGATTTAACAAA
1 AATGGATGGC-TTTCACTTCATGT-TTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAA
* * * * **
1233913 AAATGAAAAAGAATTCAGCATAAACA-CATTTATGAAATTATAAAACT-ATTT-AAAGTGAGTAA
64 AAATGAAAAA-AATTCAACTTAAA-ATAATTTATGAGATTATAAAA-TAATTTAAAACAGAGTAA
* * * * * * * * *
1233975 TTAGGCTTTCAAAAGCATGAATGATTATAAGTGGACTTTTCTTGTCAATGTATGGCTTT
126 CTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTT
1234034 TAGTTCATGT
Statistics
Matches: 2243, Mismatches: 488, Indels: 331
0.73 0.16 0.11
Matches are distributed among these distances:
322 1 0.00
323 38 0.02
324 33 0.01
325 50 0.02
326 78 0.03
327 6 0.00
328 6 0.00
329 5 0.00
330 2 0.00
332 1 0.00
333 27 0.01
334 5 0.00
335 35 0.02
336 8 0.00
337 76 0.03
338 100 0.04
339 136 0.06
340 523 0.23
341 276 0.12
342 403 0.18
343 50 0.02
344 252 0.11
345 121 0.05
346 11 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (342 bp):
AATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCTAATTATGATATGTTTTAACAAAAA
ATGAAAAAAATTCAACTTAAAATAATTTATGAGATTATAAAATAATTTAAAACAGAGTAACTAGA
CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTT
TATCAAGACAAACATCAAATTATAACATAATTTAACTAAAAATGAAAAAAAACTTATCTTAAAAT
CATTTATAAAGTTATAAAACCACTAAAAGCCAGAAACAAGGCTTTCGAAGGCATGAATGACCATA
AAAGGAATTCTCTTGTC
Found at i:1231925 original size:511 final size:499
Alignment explanation
Indices: 1229983--1233370 Score: 1615
Period size: 511 Copynumber: 6.6 Consensus size: 499
1229973 GTAAACCGCT
* * * * * * *
1229983 AATTATAATATGTTTTATCATAAAATGAAGCAGAATTTAACTTAAACTCATTT-T-GAGATTATA
1 AATTATGATATGTTTTAACAAAAAAT-AA-AAAAAATTAACTTAAAATCATTTATAGAG-TTATA
** * * * * * * ** *
1230046 AAATTATTTAAAACTAGTAGCTAGGCTTTCGAAAGCATGAGTGATTATAAATGGACTTTTCTTCT
63 AAACCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTTCTTGT
* * ** **** * * * *
1230111 CAATAGACAGCTTTTGCTTCA-TGTTTCCCAAGGTAAACATTTAATTATGATTTGTTTCAACCTA
128 TAATGGATGGCTTTTGCTTCACT-TTTTTTGAGGAAAACATCTAATTATGATTTATTTTAA-C-A
* * * * * * **
1230175 AAAAGAAAAAA--AATTTATCTTAAAATCATTTATAA-AGTTATAAAACCACTTAATGTTAGTAA
190 AAAATAAAAAAGCAATTCAACTTAAAATCTTTTATAAGA-TTATAAAA-CATTTAAAGCAAGTAA
** * * * *
1230237 -TAAGGTTTTTAAGGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATAG-TTTTCGCT
253 CT-AGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT-GCCTTTCGCT
*** ** * ** **
1230300 TCAC-TGTTTAGAAGGTAAACATCCAATTATGATCTACTTTAAGCGAAAATGAAAAAAAATCAAC
316 TCACAT-TTCCTAAGCAAAACATCAAATTATGA-CTGTTTTAA-ATAAAAT-AAAAAAAATCAAC
* * * * *
1230364 TTAAAATAATTTATAAGATTATAAAGA--AATTAAAGCGAGTAACTAGGCTTTCG-AGGCTTGAG
377 TT-AAATCATTTAT-AGATTATAAA-ACCATTTAAAGC-A-AAACTAGGCTTT-GAAGGCATGAA
** * * * * ** ** *
1230426 TGAGTATAAATGAACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTC-CTAAGGTAAACAT
436 TGACCATAAAAGGAC-TTTCTTGTCAATAGATAGCTTTCACTTCATGTTTCTC-AA-GAAAACAT
1230490 CC
498 CC
* ** * *
1230492 AATTATGATTTACTCTAACAAAAAATAAAAAAGAAAAAAACTCAACTTAAAATCATTTATA-AGT
1 AATTATGATATGTTTTAACAAAAAAT-----A-AAAAAAA-TTAACTTAAAATCATTTATAGAG-
* * ** * * * * * * *
1230556 TTATAAAATCGCTTAAAGTAAGCAACTAGGGTTTCGAAGGCATGAGTGACCACAAACATACTTTT
58 TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTT
* * * **** * * * *
1230621 CTTGTCAAAGG-TGGCTTTTGCTTCACATTTCCCAAGGCAAACATCTAA-TATG-TCCTGTCTTA
123 CTTGTTAATGGATGGCTTTTGCTTCACTTTTTTTGAGGAAAACATCTAATTATGAT-TTATTTTA
* * * *
1230683 ACCATAAATGAAACAA--AATTCAACTT-AAA-CTTATTATGAGATTGTAAAACTATTTAAAGCG
187 A-CAAAAAT-AAAAAAGCAATTCAACTTAAAATCTT-TTATAAGATTATAAAAC-ATTTAAAGC-
* *** * * * * *
1230744 AA-TAACTAGGCTTTCAAAAATATGAGTGAATATAAATGGACCTTTT-TTATAAATGGATGGCTT
247 AAGTAACTAGGCCTTCAAAGGCATGAGTGACTATAAATAGA-CTTTTCTTGTCAATGGATGCCTT
** ** * * ** * * * *
1230807 TCATTTCATGTTTCTTGAGGTAAACATCTAATTATGATATGTTTTAACCTAAAATGAACAAAAAT
311 TCGCTTCACATTTCCTAAGCAAAACATCAAATTATGA-CTGTTTTAA-ATAAAAT-AAAAAAAAT
* * * ** * *
1230872 TAATTTAAAATCATTTATA-ACGTTATACAATGACTTAAATAGACTAATAA--A-GATTTCGAAG
373 CAACTT-AAATCATTTATAGA--TTATAAAACCA-TTTAA-AG-C-AA-AACTAGGCTTT-GAAG
* * * * * *
1230933 GCAT-AAGTGACTATAAATGCACTTTTCTTGTTAATAGATGGCTTTCACTTCAATGTTTATCAAG
429 GCATGAA-TGACCATAAAAGGAC-TTTCTTGTCAATAGATAGCTTTCACTTC-ATGTTTCTCAAG
1230997 ACAAACATCC
491 A-AAACATCC
* * * *
1231007 AATTATGAGATGTTTTAACTAAAAATGAAAAAAAAAACTTATCTTAAAATCATTTATAAAGTTAT
1 AATTATGATATGTTTTAAC-AAAAA--ATAAAAAAAA-TTAACTTAAAATCATTTATAGAGTTAT
* * * * * *
1231072 AAAACCACTAAAAGTC-AGTAAC-ATGGCTTTCGAAGGCATGAGTGACTATAAACGGAATTCTCT
62 AAAACCACTTAAAG-CGAGTAACTA-GGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTTCT
* * * * *
1231135 TGTTGATGGATGGCTTTTGCTTGAC-ATTTTAGAAGGAAAACATCTAATTATGATTTGTTTTAAC
125 TGTTAATGGATGGCTTTTGCTTCACTTTTTTTG-AGGAAAACATCTAATTATGATTTATTTTAAC
** * * *
1231199 AAAAA-ATGAAAGCCAATTCAACTTAAAAT-TATTTATGAGATTATAAAACTATTTAAAACAGGT
189 AAAAATAAAAAAG-CAATTCAACTTAAAATCT-TTTATAAGATTATAAAAC-ATTTAAAGCAAGT
* * * * *
1231262 AACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGATGCCTTTCGCT
251 AACTAGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTCGCT
* * * * ** * * *
1231327 TCACGTTTCCTAATCCAAACATCAAATTATAACCTAATTT-AATGAAAAATGAAAAAAATTAATT
316 TCACATTTCCTAAGCAAAACATCAAATTATGA-CTGTTTTAAAT--AAAATAAAAAAAATCAA-C
* * * *
1231391 TTAAATCATTTATAAAGTTATAAAACCATTGAAAGCCAAAAGCAAGGCTTTCGAAGGTATGAATG
377 TTAAATCATTTATAGA-TTATAAAACCATTTAAAG-CAAAA-CTAGGCTTT-GAAGGCATGAATG
* *
1231456 ACCATAAAAGGAGCTTTCTTGTCAATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCC
438 ACCATAAAAGGA-CTTTCTTGTCAATAGATAGCTTTCACTTCATGTTTCTCAA-GAAAACATCC
* * * *
1231520 AATTATGATCTATTTTAACAAAAAATAAAAAAAATTCAACTTAAAATAATTTAT-GAGATTCTAA
1 AATTATGATATGTTTTAACAAAAAATAAAAAAAATT-AACTTAAAATCATTTATAGAG-TTATAA
** * * *
1231584 AATAATTTAAAGCGAGTAACTGGGCTTTTGAAAG-ATTGAGTGACTATAAATAGAC-TTTCTTGT
64 AACCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCA-TGAGTGACTATAAACAGACTTTTCTTGT
** * *
1231647 TAATGGATGGCTTTTGCTTCACTTTTTTTGAGGTGAACATCTAATTATGTTTTACTTTAACCAAA
128 TAATGGATGGCTTTTGCTTCACTTTTTTTGAGGAAAACATCTAATTATGATTTATTTTAA-CAAA
* * * *
1231712 AATAAAAAAGCAAACTCAACCTAAAATCTTTTATAATATTATAAAACCGTTTAAAGCAAGTAACT
192 AATAAAAAAGC-AATTCAACTTAAAATCTTTTATAAGATTATAAAA-CATTTAAAGCAAGTAACT
* * **
1231777 AGGCCTTCAAAGACATGAGTGACTATAAATAGACTTTTCTTGTCAAGGGATGCCTTTCGCACCAC
255 AGGCCTTCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTCGCTTCAC
* * * *
1231842 ATTTCCTAAGCTAAACATCTAATTATGATCTGTTTTACAATAAAACCAAAAAATATCAACTTAAA
320 ATTTCCTAAGCAAAACATCAAATTATGA-CTGTTTTA-AATAAAA-TAAAAAAAATCAACTTAAA
* * * **
1231907 CTCA-TTATGAGATTATAAAACCATTTAAAATG-AGTAACTAGGCTATTAAAAGCATGAATGATT
382 -TCATTTAT-AGATTATAAAACCATTT-AAA-GCA-AAACTAGGCT-TTGAAGGCATGAATGACC
* * ** * * * * *
1231970 ATAAATA-GATTTTTCTTCTCAATAGATAGCTTTTGCTTCATGTTTTTTGAGGTAAACATTC
441 ATAAA-AGGA-CTTTCTTGTCAATAGATAGCTTTCACTTCATG-TTTCTCAAGAAAACATCC
* * *
1232031 AATTATGATTTGTTTTAACATAAAATGAAAAAAAAATTATCTTAAAATCATTTATAGAGTTATAA
1 AATTATGATATGTTTTAACAAAAAAT--AAAAAAAATTAACTTAAAATCATTTATAGAGTTATAA
* * * ** *
1232096 AACCACTTAAAGCTACTAA-TAAGCTTTTTGACTGCATGAGTGACTATAAACAGACTTTTCTTGC
64 AACCACTTAAAGCGAGTAACTAGGC-TTTTGAAAGCATGAGTGACTATAAACAGACTTTTCTTGT
* * **
1232160 TAATGGATGGCTTTTGCTTCACTTTTCTTT-AGGCAAACATCCAATTATGATTTATTTTAAGTGA
128 TAATGGATGGCTTTTGCTTCACTTTT-TTTGAGGAAAACATCTAATTATGATTTATTTTAA-CAA
* * * * * * *
1232224 AAATGAAAAA-CAATTTAACTTGAAATCATTTA-AGAGATTATAAAGA-AATTAAAGCGAGTAAT
191 AAATAAAAAAGCAATTCAACTTAAAATCTTTTATA-AGATTATAAA-ACATTTAAAGCAAGTAAC
*** * * * * * *
1232286 TAGG-CTTTTGAGGCATAAGTGACTGTAAATTA-ACTTTTCCTATCAATGGATGGCTTTTGCTTC
254 TAGGCCTTCAAAGGCATGAGTGACTATAAA-TAGACTTTTCTTGTCAATGGATGCCTTTCGCTTC
* * *
1232349 ACATTTCTTAAAG-AAAACATCCAATTATGACTTGTTTTAATAAAAAATAAAAAAAAACTCAACG
318 ACATTTCCT-AAGCAAAACATCAAATTATGAC-TGTTTTAA-ATAAAAT-AAAAAAAA-TCAAC-
* *
1232413 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGGCTTTTGAAGACAT-AAGT
377 TTAAATCATTTAT-AGATTATAAAACCATTTAAAGCAA--AACTAGGC-TTTGAAGGCATGAA-T
* * * ** * * * **
1232477 GACCATAAATGGACTTTTGTTGTCAAGAGATAGCTTTTGCTTCACTTTTTCCCAAGAAAATATAT
437 GACCATAAAAGGAC-TTTCTTGTCAATAGATAGCTTTCACTTCA-TGTTTCTCAAGAAAACATCC
** *
1232542 AATTATGATATGTTTTAACCATAAAACGAAACAAAATTCAACTTAAAATCA-TTAT-GAGATTAT
1 AATTATGATATGTTTTAA-CA-AAAAATAAAAAAAATT-AACTTAAAATCATTTATAGAG-TTAT
* ** * ** * * * *
1232605 AAAACCATTTAAAATGAGTAACTAGGCTTTTAAAAGCACAAGTGATTAAAAATAGACTTTTCTTC
62 AAAACCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTTCTTG
* * * * * * *
1232670 TCAACGGATGGCTTTTGCTTCA-TGTTTCTTGCGGTAAACAT-TCAATTATGATTTGTTTCAACC
127 TTAATGGATGGCTTTTGCTTCACT-TTTTTTGAGGAAAACATCT-AATTATGATTTATTTTAA-C
* * ** ** *
1232733 TAAAATGAAAATAA--AATT-ATCTTAAAATAATTTAT-AGAGTTATAAAACCGCTTAAAGCTAG
189 AAAAAT-AAAA-AAGCAATTCAACTTAAAATCTTTTATAAGA-TTATAAAA-CATTTAAAGCAAG
* * * * * * * * *
1232794 TAA-TAAGG-TTATCGACGTCATGAGTAACTATAAACAGAATTTTCTTATCAATGGATGGCTTTC
250 TAACT-AGGCCT-TCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTC
* * * * * * * * *
1232857 GCTTCACTTTTCTTGACGC-AAACATCCAATTATTATTTTTTTTAAGTGAAAATGATAAAAAATT
313 GCTTCACATTTCCT-AAGCAAAACATCAAATTATGA-CTGTTTTAAAT-AAAAT-A-AAAAAAAT
* * * * *
1232921 TAACTTAAAATCATTTATGAGATTGTAAAGA--AATTAAAGCGAGTAATTAGGCTTTCG-AGGCA
373 CAACTT-AAATCATTTAT-AGATTATAAA-ACCATTTAAAGC-A-AAACTAGGCTTT-GAAGGCA
* * *** * * ** * ** *
1232983 TAAATGACTATAAATTAACATTTCTTG-CTAATGGATGGCTTTTGCTCCACATTTCCTAAAGAAA
432 TGAATGACCATAAAAGGAC-TTTCTTGTC-AATAGATAGCTTTCACTTCATGTTT-CTCAAGAAA
1233047 ACATCC
494 ACATCC
** * * * *
1233053 AATTATGACT-TACTTTAATAAAATATGAAGAAAAAAAAGCTCAACCTAAAATCATTTATA-AGA
1 AATTATGA-TATGTTTTAA-CAAA-A--AATAAAAAAAA--TTAACTTAAAATCATTTATAGAG-
* * * * * * * **
1233116 TTATAAAATCATTTAAAGCAAGTAACTAGACTTTCGAAGGCATGAGTGACCATAAATGGACTTTT
58 TTATAAAACCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTT
* * * * **** * * * *
1233181 GTTGTCAAGGGATGGCTTTCGCTTCACTTTTCCCCAAGAAAACATCTACTTATGATATGTTTTAA
123 CTTGTTAATGGATGGCTTTTGCTTCACTTTTTTTGAGGAAAACATCTAATTATGATTTATTTTAA
* * * * * * * * * **
1233246 CCATAAATGAAATAG-AATTAAACTTAAACTC-ATTATGATATTAGAAAACCATTTAAAGTGAGT
188 -CAAAAATAAAAAAGCAATTCAACTTAAAATCTTTTATAAGATTATAAAA-CATTTAAAGCAAGT
* * * * * * * *
1233309 AAGTAGACTTTTGC-AA-GTATGAGTGAATATAAATGGACTTTTCTTGTGAATGGATGGCTTTC
251 AACTAGGC-CTT-CAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTC
1233371 TTAAGGAAAA
Statistics
Matches: 2245, Mismatches: 480, Indels: 303
0.74 0.16 0.10
Matches are distributed among these distances:
508 2 0.00
509 163 0.07
510 136 0.06
511 584 0.26
512 384 0.17
513 328 0.15
514 296 0.13
515 335 0.15
516 16 0.01
518 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (499 bp):
AATTATGATATGTTTTAACAAAAAATAAAAAAAATTAACTTAAAATCATTTATAGAGTTATAAAA
CCACTTAAAGCGAGTAACTAGGCTTTTGAAAGCATGAGTGACTATAAACAGACTTTTCTTGTTAA
TGGATGGCTTTTGCTTCACTTTTTTTGAGGAAAACATCTAATTATGATTTATTTTAACAAAAATA
AAAAAGCAATTCAACTTAAAATCTTTTATAAGATTATAAAACATTTAAAGCAAGTAACTAGGCCT
TCAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGCCTTTCGCTTCACATTTCC
TAAGCAAAACATCAAATTATGACTGTTTTAAATAAAATAAAAAAAATCAACTTAAATCATTTATA
GATTATAAAACCATTTAAAGCAAAACTAGGCTTTGAAGGCATGAATGACCATAAAAGGACTTTCT
TGTCAATAGATAGCTTTCACTTCATGTTTCTCAAGAAAACATCC
Found at i:1232066 original size:682 final size:681
Alignment explanation
Indices: 1230068--1234094 Score: 2832
Period size: 682 Copynumber: 5.9 Consensus size: 681
1230058 ACTAGTAGCT
* * ** ** * * ** *
1230068 AGGCTTTCGAAAGCATGAGTGATTATAAATGGACTTTTCTTCTCAATAGACAGCTTTTGCTTCA-
1 AGGCTTTCGAAGGTATGAGTGACCATAAACAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC
* * ** * * * ** *
1230132 TGTTTCCCAAGGTAAACATTTAATTATGATTTGTTTCAACCTAAAAA-GAAAAAAAATTTATCTT
66 T-TTTCTCAAGGAAAACATCCAATTATGATCTATTTTAA-GAAAAAATGAAAAAAAATTTAACTT
* * * * ** * * *
1230196 AAAATCATTTAT-AAAGTTATAAA-ACCACTTAATGTTAGTAA-TAAGGTTTTTAAGGGCATGAG
129 AAAATCATTTATGAGA-TTCTAAAGA--AATTAAAGCGAGTAACT-AGGCTTTTGA-GGCATAAG
* * * *
1230258 TGACTATAAA-TAGACTTTTCTTATCAATGGATAG-TTTTCGCTTCAC-TGT-TTAGAAGGTAAA
189 TGACTATAAATTA-ACATTTCTTATCAATGGATGGCTTTT-GCTTCACATTTCTTA-AA-GAAAA
*** * * *
1230319 CATCCAATTATGA-TCTACTTTAAGCGAAAATGAAAAAAAA-TCAACTTAAAATAATTTATAAGA
250 CATCCAATTATGACT-TACTTTAATAAAAAATAAAAAAAAACTCAACCTAAAATCATTTATAAGA
* * * * ** *
1230382 TTATAAAGA--AATTAAAGCGAGTAACTAGGCTTTCG-AGGCTTGAGTGAGTATAAATGAACTTT
314 TTATAAA-ACCATTTAAAGCAAGTAACTAGGCTTTCGAAGACATGAGTGACCATAAATGGACTTT
* * * * * * * * ** *
1230444 TCTTGTCAATGGATGGCTTTTGCTTCACATTTCCTAAGGTAAACATCCAATTATGATTTACTCTA
378 TCTTGTCAAGGGATGCCTTTCGCTTCACTTTTCCCAA-GAAAACATCTAATTATGATATGTTTTA
* * * * * * **
1230509 ACAAAAAATAAAAAAGAAA-AAAACTCAACTTAAAATCATTTATAAGTTTATAAAATCGCTTAAA
442 AC----AAT-AAAACGAAACAAAATTCAACTTAAACTCA-TTATGAGATTATAAAACCATTTAAA
* * * * ** * * ** * * * * *
1230573 GTAAGCAACTAGGGTTTCGAAGGCATGAGTGACCACAAACATACTTTTCTTGTCAAAGG-TGGCT
501 ATGAGTAACTAGGCTTTTAAAAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGCT
** *** * * * *
1230637 TTTGCTTCACATTTCCCAAGGCAAACA-TCTAA-TATG-TCCTGTCTTAACC-ATAAATG-AAAC
566 TTTGCTTCATGTTTCTTGAGGTAAACATTC-AATTATGAT-CTATTTTAACCTA-AAATGAAAAA
* * * * * * * * * *
1230697 AAAATTCAACTTAAACTTA-TTAT-GAGATTGTAAAACTATTTAAAGCGAATAACT
628 AAAATT-ATCTTAAAATCATTTATAAAG-TTATAAAACCACTTAAAGCCACTAACA
* ** ** ** * * **
1230751 AGGCTTTCAAAAATATGAGTGAATATAAATGGACCTTTT-TTATAAATGGATGGCTTTCATTTCA
1 AGGCTTTCGAAGGTATGAGTGACCATAAACAGA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCA
** * * * * *** * *
1230815 -TGTTTCTTGAGGTAAACATCTAATTATGATATGTTTTAACCTAAAATGAACAAAAA-TTAATTT
65 CT-TTTCTCAAGGAAAACATCCAATTATGATCTATTTTAAGAAAAAATGAAAAAAAATTTAACTT
* * * ** * * * *
1230878 AAAATCATTTATAACG-TTATACAATG-ACTTAAATAGACTAA-TAAAGATTTCGAAGGCATAAG
129 AAAATCATTTATGA-GATTCTA-AA-GAAATTAAAGCGAGTAACT-AGGCTTTTG-AGGCATAAG
** * * * * ** *
1230940 TGACTATAAATGCACTTTTCTTGTTAATAGATGGCTTTCACTTCA-ATGTT-TATCAAGACAAAC
189 TGACTATAAATTAACATTTCTTATCAATGGATGGCTTTTGCTTCACAT-TTCT-TAAAGA-AAAC
** ** * * *
1231003 ATCCAATTATGAGATGTTTTAACT-AAAAATGAAAAAAAAAACTTATCTTAAAATCATTTATAA-
251 ATCCAATTATGACTTACTTTAA-TAAAAAAT--AAAAAAAAACTCAACCTAAAATCATTTATAAG
* * * * * *
1231066 AGTTATAAAACCACTAAAAGTC-AGTAAC-ATGGCTTTCGAAGGCATGAGTGACTATAAACGGAA
313 A-TTATAAAACCATTTAAAG-CAAGTAACTA-GGCTTTCGAAGACATGAGTGACCATAAATGGAC
* ** * * * * ** *
1231129 TTCTCTTGTTGATGGATGGCTTTTGCTTGACATTTT-AGAAGGAAAACATCTAATTATGATTTGT
375 TTTTCTTGTCAAGGGATGCCTTTCGCTTCAC-TTTTCCCAA-GAAAACATCTAATTATGATATGT
* * * * *
1231193 TTTAACAA-AAAATGAAAGC-CAATTCAACTTAAAATTATTTATGAGATTATAAAACTATTTAAA
438 TTTAACAATAAAACGAAA-CAAAATTCAACTTAAACTCA-TTATGAGATTATAAAACCATTTAAA
* * ** * * * * * * *
1231256 A-CAGGTAACTAGACTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTGTCAATGGATGCC
501 ATGA-GTAACTAGGCTTTTAAAAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGC
* * * * *** * * * ***
1231320 TTTCGCTTCACGTTTCCTAATCCAAACA-TCAAATTATAACCTAATTTAATGAAAAATG--AAAA
565 TTTTGCTTCATGTTTCTTGAGGTAAACATTC-AATTATGATCTATTTTAACCTAAAATGAAAAAA
* *
1231382 AAATTAAT-TTTAAATCATTTATAAAGTTATAAAACCA-TTGAAAGCCA-AAAGCA
629 AAATT-ATCTTAAAATCATTTATAAAGTTATAAAACCACTT-AAAGCCACTAA-CA
* *
1231435 AGGCTTTCGAAGGTATGAATGACCATAAA-AGGAGC-TTTCTTGTCAATGGATGGCTTTCACTTC
1 AGGCTTTCGAAGGTATGAGTGACCATAAACA-GA-CTTTTCTTGTCAATGGATGGCTTTCGCTTC
* *
1231498 A-TGTTTCTCAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATTCAACT
64 ACT-TTTCTCAAGGAAAACATCCAATTATGATCTATTTTAAGAAAAAATGAAAAAAAATTTAACT
* * * *
1231561 TAAAATAATTTATGAGATTCTAAA-ATAATTTAAAGCGAGTAACTGGGCTTTTGAAAG-ATTGAG
128 TAAAATCATTTATGAGATTCTAAAGA-AA-TTAAAGCGAGTAACTAGGCTTTTG-AGGCA-TAAG
* * * * * * **
1231624 TGACTATAAA-TAGAC-TTTCTTGTTAATGGATGGCTTTTGCTTCACTTTTTTTGAGGTGAACAT
189 TGACTATAAATTA-ACATTTCTTATCAATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACAT
* ** ** * *
1231687 CTAATTATGTTTTACTTTAACCAAAAATAAAAAAGCAAACTCAACCTAAAATCTTTTATAATATT
253 CCAATTATGACTTACTTTAATAAAAAATAAAAAA--AAACTCAACCTAAAATCATTTATAAGATT
* * * * *
1231752 ATAAAACCGTTTAAAGCAAGTAACTAGGCCTTCAAAGACATGAGTGACTATAAATAGACTTTTCT
316 ATAAAACCATTTAAAGCAAGTAACTAGGCTTTCGAAGACATGAGTGACCATAAATGGACTTTTCT
** * * * *
1231817 TGTCAAGGGATGCCTTTCGCACCACATTTCCTAAGCTAAACATCTAATTATGATCTGTTTT-ACA
381 TGTCAAGGGATGCCTTTCGCTTCACTTTTCCCAAG-AAAACATCTAATTATGATATGTTTTAACA
*
1231881 ATAAAAC-CAA-AAAATATCAACTTAAACTCATTATGAGATTATAAAACCATTTAAAATGAGTAA
445 ATAAAACGAAACAAAAT-TCAACTTAAACTCATTATGAGATTATAAAACCATTTAAAATGAGTAA
* * * *
1231944 CTAGGCTATTAAAAGCATGAATGATTATAAATAGATTTTTCTTCTCAATAGATAGCTTTTGCTTC
509 CTAGGCTTTTAAAAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGCTTC
* * * *
1232009 ATGTTTTTTGAGGTAAACATTCAATTATGATTTGTTTTAACATAAAATGAAAAAAAAATTATCTT
574 ATGTTTCTTGAGGTAAACATTCAATTATGATCTATTTTAACCTAAAATGAAAAAAAAATTATCTT
* * *
1232074 AAAATCATTTATAGAGTTATAAAACCACTTAAAGCTACTAATA
639 AAAATCATTTATAAAGTTATAAAACCACTTAAAGCCACTAACA
* ** * * *
1232117 A-GCTTTTTGACTGCATGAGTGACTATAAACAGACTTTTCTTG-CTAATGGATGGCTTTTGCTTC
1 AGGC-TTTCGAAGGTATGAGTGACCATAAACAGACTTTTCTTGTC-AATGGATGGCTTTCGCTTC
** * * ** *
1232180 ACTTTTCTTTAGGCAAACATCCAATTATGATTTATTTTAAGTGAAAATGAAAAACAATTTAACTT
64 ACTTTTCTCAAGGAAAACATCCAATTATGATCTATTTTAAGAAAAAATGAAAAAAAATTTAACTT
* * * *
1232245 GAAATCATTTAAGAGATTATAAAGAAATTAAAGCGAGTAATTAGGCTTTTGAGGCATAAGTGACT
129 AAAATCATTTATGAGATTCTAAAGAAATTAAAGCGAGTAACTAGGCTTTTGAGGCATAAGTGACT
* * *
1232310 GTAAATTAACTTTTCCTATCAATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACATCCAATT
194 ATAAATTAACATTTCTTATCAATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACATCCAATT
** *
1232375 ATGACTTGTTTTAATAAAAAATAAAAAAAAACTCAACGTAAAATCATTTATAAGATTATAAAACC
259 ATGACTTACTTTAATAAAAAATAAAAAAAAACTCAACCTAAAATCATTTATAAGATTATAAAACC
* * * *
1232440 ATTTAAAGCAAGTAACTAGGCTTTTGAAGACATAAGTGACCATAAATGGACTTTTGTTGTCAAGA
324 ATTTAAAGCAAGTAACTAGGCTTTCGAAGACATGAGTGACCATAAATGGACTTTTCTTGTCAAGG
* * * *
1232505 GATAG-CTTTTGCTTCACTTTTTCCCAAGAAAATATATAATTATGATATGTTTTAACCATAAAAC
389 GAT-GCCTTTCGCTTCAC-TTTTCCCAAGAAAACATCTAATTATGATATGTTTTAACAATAAAAC
*
1232569 GAAACAAAATTCAACTTAAAATCATTATGAGATTATAAAACCATTTAAAATGAGTAACTAGGCTT
452 GAAACAAAATTCAACTTAAACTCATTATGAGATTATAAAACCATTTAAAATGAGTAACTAGGCTT
* * *
1232634 TTAAAAGCA-CAAGTGATTAAAAATAGACTTTTCTTCTCAACGGATGGCTTTTGCTTCATGTTTC
517 TTAAAAGCATGAA-TGATTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGCTTCATGTTTC
* * * * * *
1232698 TTGCGGTAAACATTCAATTATGATTTGTTTCAACCTAAAATGAAAATAAAATTATCTTAAAATAA
581 TTGAGGTAAACATTCAATTATGATCTATTTTAACCTAAAATGAAAAAAAAATTATCTTAAAATCA
* * * * *
1232763 TTTATAGAGTTATAAAACCGCTTAAAGCTAGTAATA
646 TTTATAAAGTTATAAAACCACTTAAAGCCACTAACA
* * * * *
1232799 AGG-TTATCG-ACGTCATGAGTAACTATAAACAGAATTTTCTTATCAATGGATGGCTTTCGCTTC
1 AGGCTT-TCGAAGGT-ATGAGTGACCATAAACAGACTTTTCTTGTCAATGGATGGCTTTCGCTTC
** * * * * * ** *
1232862 ACTTTTCTTGACGCAAACATCCAATTATTATTTTTTTTAAGTGAAAATGATAAAAAATTTAACTT
64 ACTTTTCTCAAGGAAAACATCCAATTATGATCTATTTTAAGAAAAAATGAAAAAAAATTTAACTT
* * * *
1232927 AAAATCATTTATGAGATTGTAAAGAAATTAAAGCGAGTAATTAGGCTTTCGAGGCATAAATGACT
129 AAAATCATTTATGAGATTCTAAAGAAATTAAAGCGAGTAACTAGGCTTTTGAGGCATAAGTGACT
* * *
1232992 ATAAATTAACATTTCTT-GCTAATGGATGGCTTTTGCTCCACATTTCCTAAAGAAAACATCCAAT
194 ATAAATTAACATTTCTTATC-AATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACATCCAAT
*
1233056 TATGACTTACTTTAATAAAATATGAAGAAAAAAAAGCTCAACCTAAAATCATTTATAAGATTATA
258 TATGACTTACTTTAATAAAAAAT--A-AAAAAAAA-CTCAACCTAAAATCATTTATAAGATTATA
* * * *
1233121 AAATCATTTAAAGCAAGTAACTAGACTTTCGAAGGCATGAGTGACCATAAATGGACTTTTGTTGT
319 AAACCATTTAAAGCAAGTAACTAGGCTTTCGAAGACATGAGTGACCATAAATGGACTTTTCTTGT
* * *
1233186 CAAGGGATGGCTTTCGCTTCACTTTTCCCCAAGAAAACATCTACTTATGATATGTTTTAACCAT-
384 CAAGGGATGCCTTTCGCTTCACTTTT-CCCAAGAAAACATCTAATTATGATATGTTTTAACAATA
* * * * * * * *
1233250 AAATGAAATAGAATTAAACTTAAACTCATTATGATATTAGAAAACCATTTAAAGTGAGTAAGTAG
448 AAACGAAACAAAATTCAACTTAAACTCATTATGAGATTATAAAACCATTTAAAATGAGTAACTAG
* ** * * * * * *
1233315 ACTTTTGCAAGTATGAGTGAATATAAATGGACTTTTCTTGTGAATGGATGGC-TTT-CTT-A---
513 GCTTTTAAAAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGCTTCATGT
* * * * **
1233374 ------AGGAAAACATCCAATTATGATCTATTTTAACCTGAAATGAAAATATCA--AT-TTAAAA
578 TTCTTGAGGTAAACATTCAATTATGATCTATTTTAACCTAAAATGAAAAAAAAATTATCTTAAAA
* * ** *** *
1233430 TCATTTATAAGGTTATACAATGACTTAAATAGACTGACA
643 TCATTTATAAAGTTATAAAACCACTTAAAGCCACTAACA
*
1233469 AGGCTTTC-AGAGGTATGAGTGACCATAAATAGACTTTTCTTGTCAATGGATGGC-TTCGCTTCA
1 AGGCTTTCGA-AGGTATGAGTGACCATAAACAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
* * * *
1233532 TGTTTTCT-AA-AACAAATAGT-GAATTATGATCTATTTTAAGTAAAAAA-GAAAAAAAA-TTAA
65 -CTTTTCTCAAGGA-AAACA-TCCAATTATGATCTATTTTAAG-AAAAAATGAAAAAAAATTTAA
* * * * * *
1233592 CTTAAAATCATTTATGAGACTATAACGAAATTAAAACAAGTAACTAGGCTTTTGAGGCATGAGTG
126 CTTAAAATCATTTATGAGATTCTAAAGAAATTAAAGCGAGTAACTAGGCTTTTGAGGCATAAGTG
* * ** ** * * * *
1233657 ATTCTAAA-TAGAC-TTGTCTTATCAATAAATGGCTTTCACTTCACATATCTCAAGGTAAACATC
191 ACTATAAATTA-ACATT-TCTTATCAATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACATC
* * * * * * ** *
1233720 TAATTATGAATTAATTTAATGAAAAA-AGAAAAAAATTCAGTCTAAAATCATTTATAAAGCTT-T
254 CAATTATGACTTACTTTAATAAAAAATAAAAAAAAACTCAACCTAAAATCATTTAT-AAGATTAT
** * * ** * * * *
1233783 AAAACCCCTTAAAGCGAGTAAC-AAGCTTTTCGAAGGTATGGGTGACTACAAATGGGCTTTTCTT
318 AAAACCATTTAAAGCAAGTAACTAGGC-TTTCGAAGACATGAGTGACCATAAATGGACTTTTCTT
* ** * * * * * *
1233847 ATCAATTGATGTCTTTTC-CTTCACGTCTTT--TAAGGCAGACATCTAATTATGATCTGATTTAA
382 GTCAAGGGATG-CCTTTCGCTTCAC-T-TTTCCCAA-GAAAACATCTAATTATGATATGTTTTAA
* * * * * * *
1233909 CAA-AAAATGAAA-AAGAATTCAGCATAAACACATTTATGAAATTATAAAACTATTTAAAGTGAG
443 CAATAAAACGAAACAA-AATTCAACTTAAACTCA-TTATGAGATTATAAAACCATTTAAAATGAG
* * * * * *
1233972 TAATTAGGCTTTCAAAAGCATGAATGATTATAAGTGGACTTTTCTTGTCAATGTATGGCTTTTAG
506 TAACTAGGCTTTTAAAAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGCTTTT-G
*** *
1234037 -TTCATGTTTCCCAAGGTAAACA-TCAATTATGATCTATTTTAACCTAAAATTAAAAAAA
570 CTTCATGTTTCTTGAGGTAAACATTCAATTATGATCTATTTTAACCTAAAATGAAAAAAA
1234095 TTTAATTCAA
Statistics
Matches: 2713, Mismatches: 504, Indels: 262
0.78 0.14 0.08
Matches are distributed among these distances:
662 5 0.00
663 127 0.05
664 92 0.03
665 7 0.00
666 2 0.00
667 5 0.00
668 123 0.05
669 39 0.01
670 83 0.03
671 7 0.00
673 39 0.01
675 31 0.01
676 8 0.00
680 242 0.09
681 72 0.03
682 903 0.33
683 314 0.12
684 215 0.08
685 134 0.05
686 168 0.06
687 20 0.01
688 74 0.03
689 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (681 bp):
AGGCTTTCGAAGGTATGAGTGACCATAAACAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC
TTTTCTCAAGGAAAACATCCAATTATGATCTATTTTAAGAAAAAATGAAAAAAAATTTAACTTAA
AATCATTTATGAGATTCTAAAGAAATTAAAGCGAGTAACTAGGCTTTTGAGGCATAAGTGACTAT
AAATTAACATTTCTTATCAATGGATGGCTTTTGCTTCACATTTCTTAAAGAAAACATCCAATTAT
GACTTACTTTAATAAAAAATAAAAAAAAACTCAACCTAAAATCATTTATAAGATTATAAAACCAT
TTAAAGCAAGTAACTAGGCTTTCGAAGACATGAGTGACCATAAATGGACTTTTCTTGTCAAGGGA
TGCCTTTCGCTTCACTTTTCCCAAGAAAACATCTAATTATGATATGTTTTAACAATAAAACGAAA
CAAAATTCAACTTAAACTCATTATGAGATTATAAAACCATTTAAAATGAGTAACTAGGCTTTTAA
AAGCATGAATGATTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGCTTCATGTTTCTTGAG
GTAAACATTCAATTATGATCTATTTTAACCTAAAATGAAAAAAAAATTATCTTAAAATCATTTAT
AAAGTTATAAAACCACTTAAAGCCACTAACA
Found at i:1235034 original size:171 final size:170
Alignment explanation
Indices: 1234163--1235462 Score: 727
Period size: 171 Copynumber: 7.6 Consensus size: 170
1234153 AGTGAGAAAC
* **
1234163 GAAAAA-ATTTTA-ATTTAAAATCATTTATAAGATTATAAAATCATTTAAAATGAGTAACTACA-
1 GAAAAAGA-TTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTA-AG
* * * * ** * * * * * *** *
1234225 ATTTTAAAGGCATAAATGAAGATAAATAGATTTTTCTTACCAAT-CATTGGCATCAACTTCACGT
64 CTTTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGA-TAGCATCTGTTTCATGT
*** * ** *
1234289 TTCTTGATGCAAACAAT-CAA-TATTGATTGATTTCAAAGAAGAAT
128 TTCCCAATGCAAAC-ATCCAATTA-TGA-TGATTTTAACTAAAAAT
* * * * *
1234333 GAAAAATATTTTGATTTAAAATCATTTATAAGATTATATAATCATTTAAAGCGAGTAACTAGGCT
1 GAAAAAGATTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAAGCT
* * * *
1234398 TTTGATGGCATAAGTGTCTATAAATGGACTTTTCTCATTAATGGAT-GCCATTTGTTTCATGTTT
66 TTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATAG-CATCTGTTTCATGTTT
* * * * * * *
1234462 CCCAATGTAATCATCCATTTGTTATCGATTTTAACCAAAAAA
130 CCCAATGCAAACATCCAATTATGAT-GATTTTAACTAAAAAT
* * * * ** * *
1234504 GACAAAGAGTTTAG-TTGAAAATCATTAATCAGATTATAAAACCATTTAAAATGTGTAAC-AATA
1 GAAAAAGA-TTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAA-G
** * * * * * * *
1234567 CTTTCAAAGGTATGAA-TGGCTA-AAAAGGGCTTTTCTTGTCAATGGA-AGGTATCTGTTTCATG
64 CTTTTGATGGCAT-AAGTGACTATAAATGGACTTTTCTTATCAATGGATA-GCATCTGTTTCATG
** *
1234629 TTTCGTAAT-CAAACATCCAATTATGAT-ATGTTTGAAC-AACAAT
127 TTTCCCAATGCAAACATCCAATTATGATGAT-TTT-AACTAAAAAT
* * * * *
1234672 GAAAAAGATTTCGATTTAAAATCATTTATAGGATCATAAAACCA-TTACAAGCGAGTAACTATGA
1 GAAAAAGATTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTA-AAGCGAGTAACTAAGC
* * * * * * * * *** **
1234736 TTTTAAAGGCATGAGTGACTATAAATAGATTTTTCTTATAAATGGTTCA-TATCCACTTCACATT
65 TTTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGAT-AGCATCTGTTTCATGTT
** * * * ** * *
1234800 TCTTAATGAAAACAATCAAATT-TGATTGATTTCAAAGAAGAAC
129 TCCCAATGCAAAC-ATCCAATTATGA-TGATTTTAACTAAAAAT
* ** * *
1234843 AAAAAATCTTTGGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGT-ACTTAAGC
1 GAAAAAGATTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAAC-TAAGC
** * *
1234907 TTTTGATGGCATAAGTGACTATAAATCAACTTTTCTCATCAGTGGATAGCATCTGTTTCATGTTT
65 TTTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCATCTGTTTCATGTTT
* * *
1234972 CCCAATACAAACATCCATTTATGATCAATTTTAACTAAAAAT
130 CCCAATGCAAACATCCAATTATGAT-GATTTTAACTAAAAAT
* * * *
1235014 GAAAAAGATTTCAG-TTTAAAATCATATATAAGATTATAAAGCCAATTAAAACGAGTAA-TAAGG
1 GAAAAAGATTT-AGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAA-G
** * * ** **
1235077 CTTCCGGA-GGCATAAGTGACTATAAATGGACTTTTCTTATCAAT-CAAAGGTGTCCACTTT-AT
64 CTT-TTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATA-GCAT-CTGTTTCAT
* * *
1235139 GTTTCCTAATGCAAACATCCAAATATGAT--TTGTTAGAATGAAAAAT
126 GTTTCCCAATGCAAACATCCAATTATGATGATT-TTA-ACT-AAAAAT
* * * **
1235185 GAAAAAGATTTCA-ATTTAAAATTATTTATATGATTATAAAACCATTCAAAGTTAGTAA-TAAGA
1 GAAAAAGATTT-AGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAAG-
* * * * * * * * * * **
1235248 CCTTCGATGGAATAAGTGACTATAAATGGACTTTTCTTGTTAGTTGATGGCATTTGCTTCACATT
64 CTTTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCATCTGTTTCATGTT
* * * * *
1235313 TCTCAATGCAAATATCCAATTTTTATTGATTTTAA-TCAAAAAG
129 TCCCAATGCAAACATCCAATTATGA-TGATTTTAACT-AAAAAT
* * * * * *
1235356 GAGAAAGATTTTGATTTAAAGTCATTTATAAGATTATAAAACCAATCAAAGTGAGTAA-TAAGGC
1 GAAAAAGATTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAA-GC
* ** * * * *
1235420 TCTCAAAGGCATGAGTGACCT-TAAATGGACCTTTCTTGTCAAT
65 TTTTGATGGCATAAGTGA-CTATAAATGGACTTTTCTTATCAAT
1235463 AGATGCCTTT
Statistics
Matches: 858, Mismatches: 220, Indels: 103
0.73 0.19 0.09
Matches are distributed among these distances:
167 10 0.01
168 64 0.07
169 53 0.06
170 82 0.10
171 617 0.72
172 27 0.03
173 3 0.00
174 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
GAAAAAGATTTAGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAAGCT
TTTGATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGATAGCATCTGTTTCATGTTTC
CCAATGCAAACATCCAATTATGATGATTTTAACTAAAAAT
Found at i:1236575 original size:170 final size:169
Alignment explanation
Indices: 1236083--1237025 Score: 526
Period size: 170 Copynumber: 5.5 Consensus size: 169
1236073 GGATGGTTTC
* ** ***
1236083 GCTTCATGTTT-TTCAATGCAAACATACAATTATGATCTG-TTTTAACCAAAAACCAAAAA-CCC
1 GCTTCATGTTTCTT-AATGCAAACATCCAATTATGATC-GATTTTAACCAAAAATAAAAAAGATT
* * * *** * *
1236145 TTGATTTACAATAATTTATAAATCATAAAATTGTTTAAA-TCGAGTAGCAATGCTTTT-AATGGC
64 TTGATTTAAAATCATTTATAAATTATAAAACCATTTAAAGT-GAGTAACAAGGCTTTTGAA-GGC
* * * * * * * **
1236208 ACGAGTGGCTATAAATGTATTTTTCTACTCAAAGAATGGCATCT
127 ATGAGTGACTATAAATGGAATTTTCT-TTCAATGGATCACATCT
* * *** * * * * ** *
1236252 GCTTCATGTTTCCTT-GTGCAAACATTCAAACGTAATCTAGTTTAACTAAAAATGGAAAAGGTTT
1 GCTTCATGTTT-CTTAATGCAAACATCCAATTATGATCGATTTTAACCAAAAATAAAAAAGATTT
** * * * *** *
1236316 CAATATAAAATCATTTATAAGATTATAAAATCC-TTTAAAGCT-AGTGACAA-GATTGCCAAATG
65 TGATTTAAAATCATTTATAA-ATTATAAAA-CCATTTAAAG-TGAGTAACAAGGCTT-TTGAAGG
** * * * * * *
1236378 CATTTGTAACTATGAACGGAGTTTTCTTCTCTATTGATCACATCT
126 CATGAGTGACTATAAATGGAATTTTCTT-TCAATGGATCACATCT
* * *
1236423 GCTTCATG-TTCCTAACGCAAACATCCAATTATGATCGATTTTAACCAAAATTAAAAAAGATTTT
1 GCTTCATGTTTCTTAATGCAAACATCCAATTATGATCGATTTTAACCAAAAATAAAAAAGATTTT
* *
1236487 GATTTAAAATCATTTATAACATTATAAAACCATTTAAAATGAGTAACAAGGCTTTTGAAGGAATG
66 GATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATG
* *
1236552 AGTGACTATAAATGGAATTTTCTTTCGAATGGATGCCCTTC-
130 AGTGACTATAAATGGAATTTTCTTTC-AATGGAT-CACATCT
* * * ** * * * *
1236593 ACTTCATGTTTCTTGATGCATACATATAATTATGAT--ATGTTTGAACTAAAAACAAAATATATT
1 GCTTCATGTTTCTTAATGCAAACATCCAATTATGATCGAT-TTT-AACCAAAAATAAAAAAGATT
* * * * * * *
1236656 TTGATTTAAAATGATTTATAAATCATAAAAGCATTGAAAGGGAGTAACAATGCTTCGATGGCAAT
64 TTGATTTAAAATCATTTATAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTT---TTG-AA-
*
1236721 GGCATGAGTGACTATAAAT-GAATTTTCTAGTCAATGGA-CA-ATCTCT
124 GGCATGAGTGACTATAAATGGAATTTTCT-TTCAATGGATCACA--TCT
* * * * * * * *
1236767 GCTTCATGTTTCTTTATGCCACCATCCAAATGTAATCTG-TTTTAACCAAAACTAAAAAAGGTTT
1 GCTTCATGTTTCTTAATGCAAACATCCAATTATGATC-GATTTTAACCAAAAATAAAAAAGATTT
* ** * *
1236831 TGATTTAAAATCATTGATAAGATTATAAAATTAGTTAAAGTGAGTAACTAGGCTTTTGAAGGCAT
65 TGATTTAAAATCATTTATAA-ATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCAT
* * *
1236896 GAGTGAATATAAATGG-ACTTTCTTATCAATGGA-AAGCATCT
129 GAGTGACTATAAATGGAATTTTCTT-TCAATGGATCA-CATCT
* ** * * * * * * *
1236937 GTTTCATGTTTCTCGATG-AAACATTCAAGTATAATCTG-TTTGAATCAAAAATAAAAAATAGTT
1 GCTTCATGTTTCTTAATGCAAACATCCAATTATGATC-GATTTTAACCAAAAATAAAAAAGATTT
** *
1237000 CAATTTCAAATCATTTAT-AATTATAA
65 TGATTTAAAATCATTTATAAATTATAA
1237026 TGTTGGTACA
Statistics
Matches: 582, Mismatches: 155, Indels: 76
0.72 0.19 0.09
Matches are distributed among these distances:
167 7 0.01
168 1 0.00
169 99 0.17
170 213 0.37
171 125 0.21
172 6 0.01
173 5 0.01
174 76 0.13
175 49 0.08
176 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (169 bp):
GCTTCATGTTTCTTAATGCAAACATCCAATTATGATCGATTTTAACCAAAAATAAAAAAGATTTT
GATTTAAAATCATTTATAAATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGA
GTGACTATAAATGGAATTTTCTTTCAATGGATCACATCT
Found at i:1236834 original size:174 final size:170
Alignment explanation
Indices: 1236461--1236912 Score: 416
Period size: 174 Copynumber: 2.6 Consensus size: 170
1236451 TTATGATCGA
* *
1236461 TTTTAACCAAAATTAAAAAAGATTTTGATTTAAAATCATTTATAACATTATAAAACCATTTAAAA
1 TTTTAACCAAAACTAAAAAAGATTTTGATTTAAAATCATTTATAACATTATAAAACCATTGAAAA
* * * **
1236526 TGAGTAACAAGGCTTTTGAAGGAATGAGTGACTATAAATGGAATTTTCTTTCGAATGGATGCCCT
66 GGAGTAACAAGGCTTTGGAAGGAATGAGTGACTATAAATGGAATTTTCTGTCGAATGGA-GCAAT
* * *
1236591 TCACTTCATGTTTCTTGATGCATACATATAATTATGATATG
130 TCACTTCATGTTTCTTGATGCATACATACAAATATAATATG
* * * * * * *
1236632 TTTGAACTAAAAAC-AAAATATATTTTGATTTAAAATGATTTATAA-ATCATAAAAGCATTGAAA
1 TTTTAAC-CAAAACTAAAAAAGATTTTGATTTAAAATCATTTATAACATTATAAAACCATTGAAA
* * *
1236695 GGGAGTAACAATGCTTCGATGGCAATGGCATGAGTGACTATAAAT-GAATTTTCTAGTC-AATGG
65 AGGAGTAACAAGGCTT---TGG-AA-GGAATGAGTGACTATAAATGGAATTTTCT-GTCGAATGG
* * * * * *
1236758 A-CAATCTCTGCTTCATGTTTCTTTATGCCA-CCATCCAAATGTAATCTG
124 AGCAAT-TC-ACTTCATGTTTCTTGATG-CATACATACAAATATAATATG
* * * **
1236806 TTTTAACCAAAACTAAAAAAGGTTTTGATTTAAAATCATTGATAAGATTATAAAATTAGTT--AA
1 TTTTAACCAAAACTAAAAAAGATTTTGATTTAAAATCATTTATAACATTATAAAACCA-TTGAAA
* * * *
1236869 AGTGAGTAACTAGGCTTTTGAAGGCATGAGTGAATATAAATGGA
65 AG-GAGTAACAAGGCTTTGGAAGGAATGAGTGACTATAAATGGA
1236913 CTTTCTTATC
Statistics
Matches: 225, Mismatches: 41, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
170 46 0.20
171 38 0.17
172 8 0.04
173 9 0.04
174 79 0.35
175 43 0.19
176 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (170 bp):
TTTTAACCAAAACTAAAAAAGATTTTGATTTAAAATCATTTATAACATTATAAAACCATTGAAAA
GGAGTAACAAGGCTTTGGAAGGAATGAGTGACTATAAATGGAATTTTCTGTCGAATGGAGCAATT
CACTTCATGTTTCTTGATGCATACATACAAATATAATATG
Found at i:1258544 original size:171 final size:169
Alignment explanation
Indices: 1258151--1260569 Score: 1434
Period size: 170 Copynumber: 14.4 Consensus size: 169
1258141 TTACAAAAGA
* * * *
1258151 AAACATCCAAATATGATCT-ATTTAATCCAAAAATGAAAAAGATTTTGATTTAAAATTATTCATA
1 AAACATCCAATTATGAT-TGTTTTAA--CAAAAATGAAAAAGATTTTGATTTAAAATCATTTATA
* * * ** * *
1258215 AGATTATAAAACCATTTAAAATGAATAACCAGGCTTTCG-ATTCTTGAGTGACTATAAATAGACT
63 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
** *
1258279 TTTCTTGTCAACAGATGGCAT-TACTTCACGTTT-TCCAATGC
128 TTTCTTGTCAATGGATGGCATCTACTTCATGTTTCT-CAATGC
* * *
1258320 AAACATCTAATTTTGATTGATTTTAACCAAAAATGAAAAAGATTTAGATTTAAAATCATTTATAA
1 AAACATCCAATTATGATTG-TTTTAA-CAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* * * *
1258385 GATTATAAAACCATTTAAAGTGAGCAACAAGCCTTTCGAAGGCATGTGTGTCTATAAATGGACTT
64 GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* *
1258450 TTCTTGTCAATGGATGGCTTCCACTTCATGTTTCTCAATGC
129 TTCTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
* * **
1258491 AAACATTCAATTATGATCTGTTTTAATCAAAAATAAAAAAGATTTAAATTTAAAATCATTTATAA
1 AAACATCCAATTATGAT-TGTTTTAA-CAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* * * * *
1258556 -ATTATAAAATCATTAAAAGCGAGTAACAAGGCTTTC-AATGCCATAAGTGACTATAAATGGAAC
64 GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATGG-AC
*
1258619 -TTTCTTGTCAATGGATGGCATCTACTTCATGCTTC-CAAATGC
127 TTTTCTTGTCAATGGATGGCATCTACTTCATGTTTCTC-AATGC
* * *
1258661 AAACATCCAAATATGATCTCTTTTAGCAAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
1 AAACATCCAATTATGAT-TGTTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* * * * * * *
1258726 GATTATAAAACTATTTAAAGCT-AGTGACTACGATTTTGAAGGCATGAGTGACTATAAATGAACT
64 GATTATAAAACCATTTAAAG-TGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
1258790 TTTTTTGTAAATGGTTGGCATCCATTTCTTGTTTCT-AGATGC
128 TTTCTTGTCAATGGATGGCATCTACTTCATGTTTCTCA-ATGC
* * * *
1258832 AAACAAT-CAATTTTGATTGATTTCAA-ATTGAAATGAAAAAGAATTTGATTT-AAATCATTTAT
1 AAAC-ATCCAATTATGATTG-TTTTAACA--AAAATGAAAAAGATTTTGATTTAAAATCATTTAT
** * * * * * **
1258894 AACCTTATAAAATCATTTATAA--G-GTAACTAGGCTTTCG-ATGCTATGAGTAACTAGAAATAA
62 AAGATTATAAAACCATTTA-AAGTGAGTAACAAGGCTTTCGAAGGC-ATGAGTGACTATAAATGG
** * * * * * *
1258955 ACTTTTCTCATCAATTGAT-ACATATGCTTCACTTTTTCT-GATGC
125 ACTTTTCTTGTCAATGGATGGCATCTACTTCA-TGTTTCTCAATGC
* * ** *
1258999 AAACATCCAATTTTGATTGATTTTAACAAAAAATGAAAAACATTTTGGCTTAAAATCATTTAAAA
1 AAACATCCAATTATGATTG-TTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* ** * * * * ** * *
1259064 GACTATAAAATTATTCAAGGCGAGTAACAAGGCTTTCAAAGGTGTGAGAGACTATCAATGGACTT
64 GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* ** ** * ** **
1259129 TCCTTACCAATGGAACGCAT-TCGCTTCACATTTCTTGATGC
129 TTCTTGTCAATGGATGGCATCT-ACTTCATGTTTCTCAATGC
* * * * * ** * *
1259170 AAATATACAATTATGATAT-ATTTGAGATTAA--AAAAAGATTATGGTTTAAAATCATTTATAAG
1 AAACATCCAATTATGAT-TGTTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAG
* * * * ** * ** * * * **
1259232 ATTATAAAACCA-TAAGAAGCGTGTAACGAGATTTTTGAAGGTTTGAGTCATTTTAAATGCTCTT
65 ATTATAAAACCATTTA-AAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
1259296 TTTTTATTAATGGATGACTTCTACTTTATGTTTCTTAATGC
129 TTCTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
* * * * * * ** * * *
1259337 AAACTTCTAATTATTATATATTTTAAC--TAA--AAAAA-ATCTCAATTTAAAATCATTCATTAT
1 AAACATCCAATTATGAT-TGTTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAG
* ** * *
1259397 ATTATAAAACAATTTAAAGTGAGTAACAAAACTTTC-AATGGTATGAGTGACTATAAATGGAGTT
65 ATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATGGACTT
* * * **
1259461 TTCTTGTCAGTAGATGGCACCCGCTTCATGTTTCTCAATGC
129 TTCTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
* * * * * *
1259502 AAACATCCAATTTTGATTAATTCTAAACAAAAATGAGAAAGA-TTTCATTTAAAATCATTTACAA
1 AAACATCCAATTATGATT-GTT-TTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* * * * * *
1259566 GATTATAAAACCATTTAAAGTAAGTAACAAGGTTTTCAAAGGCATGAGTGACTACAATGTGGACC
64 GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAA-ATGGACT
* * * * * * * **
1259631 TTTCTTCTTAATGTAAGGCGTCTACTTC-TCTTTTTTTGATGC
128 TTTCTTGTCAATGGATGGCATCTACTTCAT-GTTTCTCAATGC
* * * *
1259673 AAACATCCAA-AATGATCTATTTAAACAAAAATGAAAAAGATTTTGATTTAAAACCATTTATAAG
1 AAACATCCAATTATGAT-TGTTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAG
* * ** * * * * * * * *
1259737 GTTATAAGATGATTTTAAGTGAGTAACTATGATTTCGATGGCATTAGTCACTATAAATGAAC-TT
65 ATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * ** * ** ** ** *
1259801 TCTTGCCAACGG-TAACATATGTTTCACATTTCTCGCTAC
130 TCTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
* * * *
1259840 AAACATCCAATTAAGATTGATTTTAACCAAAAATGAAAAA-AATTT-ATTTTCAAATCATTTTTA
1 AAACATCCAATTATGATTG-TTTTAA-CAAAAATGAAAAAGATTTTGA-TTTAAAATCATTTATA
** ** * * * * * *
1259903 AGATTATAAAACCATAGAAAACGTGTAATAAGGCTTTC-AATAGCATGGGTGACTATAAATGAAA
63 AGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATGGAC
* * ** * *
1259967 TTTTTTTGCCAACAGATGGCATCTGCTTCACGTTT-TCGAATGC
127 TTTTCTTGTCAATGGATGGCATCTACTTCATGTTTCTC-AATGC
* * * * * * * *
1260010 AAATAACCAAATATAATCCGTTTTAACCAAAAA-CAAAATAGATTTTGATTTAAAATTATTTATG
1 AAACATCCAATTATGAT-TGTTTTAA-CAAAAATGAAAA-AGATTTTGATTTAAAATCATTTATA
** ** * * *
1260074 AG-TT-T---A-C--TTAAAGCAAGTAACAATGG-TTTTAAAGGCATGAATAACTATTAATGGAC
63 AGATTATAAAACCATTTAAAGTGAGTAACAA-GGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
1260130 TTTTCTTAGT-AATTGAAGGCATCTGCTTCACGCTTC-CTAATGC
127 TTTTCTT-GTCAATGGATGGCATCTACTTCATGTTTCTC-AATGC
* * * * * * *
1260173 AAACATCTAAATATGATCTATTCTAACTAAAAATGAAAAATATTCTGATTTAAAATCATTTAAAA
1 AAACATCCAATTATGAT-TGTTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATTTATAA
* * * * *
1260238 GATTATAAAATCATTTAAAGTGAGTAACTAGGTTTTCGATGGC---A-TGA-T-TAAATTGACTT
64 GATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
*** * * **
1260297 TTCTTGTCAACATATTGCATTCGA-TTCACATTTC-CTAATGC
129 TTCTTGTCAATGGATGGCA-TCTACTTCATGTTTCTC-AATGC
* * ** *
1260338 AAACATCCAATTTTGATGGAATTTT-ACAAAAAATG-AAAATTTTTTGATTTAAAGTCATTTATA
1 AAACATCCAATTATGATTG--TTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATTTATA
* * * * * * ** *
1260401 AGATTATAAAATCGTTAAAAGTG-GCGAACTAGTCTTTCGAAGGCATGAAAGACTATAAATAGAC
63 AGATTATAAAACCATTTAAAGTGAG-TAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
1260465 TTTTCTTGTGAATGGATAGCTTTTACTTCATGGTTCCCAATGC
127 TTTTCTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
1260508 AAACATCCAATTATGATTTGTTTTAACTAAAAATGAAAAAGATTTTGATTTAAAATCATTTA
1 AAACATCCAATTATGA-TTGTTTTAAC-AAAAATGAAAAAGATTTTGATTTAAAATCATTTA
1260570 AGTCATGAGT
Statistics
Matches: 1718, Mismatches: 435, Indels: 192
0.73 0.19 0.08
Matches are distributed among these distances:
162 1 0.00
163 109 0.06
164 76 0.04
165 165 0.10
166 25 0.01
167 191 0.11
168 158 0.09
169 155 0.09
170 502 0.29
171 327 0.19
172 9 0.01
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
AAACATCCAATTATGATTGTTTTAACAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGA
TTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCATCTACTTCATGTTTCTCAATGC
Found at i:1260257 original size:19 final size:19
Alignment explanation
Indices: 1260219--1260256 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
1260209 AAAATATTCT
1260219 GATTTAAAATCATTTAAAA
1 GATTTAAAATCATTTAAAA
1260238 GATTATAAAATCATTTAAA
1 GATT-TAAAATCATTTAAA
1260257 GTGAGTAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (19 bp):
GATTTAAAATCATTTAAAA
Found at i:1261141 original size:26 final size:27
Alignment explanation
Indices: 1261086--1261141 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
1261076 TATAATCTAT
** *
1261086 TTTAACCAAAAATGAAAAAGACTTTGA
1 TTTAACCAAAAACAAAAAAGACTTTCA
*
1261113 TTTAACCAAAAACAAAAAATA-TTTCA
1 TTTAACCAAAAACAAAAAAGACTTTCA
1261139 TTT
1 TTT
1261142 GAAAATCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.30
Consensus pattern (27 bp):
TTTAACCAAAAACAAAAAAGACTTTCA
Found at i:1261314 original size:197 final size:196
Alignment explanation
Indices: 1260917--1261314 Score: 480
Period size: 197 Copynumber: 2.0 Consensus size: 196
1260907 TATGATATAT
* * * * *
1260917 TTTAATCAAAAACAAAAACATTTTGATTTAAAATCACTTATAAACTATAAAATCATCTGAAGCGA
1 TTTAACCAAAAACAAAAACATTTTCATTTAAAATCACTTATAAACTATAAAATCATCTAAAACAA
* ** * * *
1260982 GTAACAAGGCTTTTGATGGCATGGATAACTGTAAATGAAATTTTCTCATCAATGGATGGCATCGG
66 GTAACAAGGCTTTCGATGGCATGGATAACAATAAAAGAAATTTTCTCATCAATGGATGACATCGA
* * *
1261047 CTTCATGTTTTCCAATGCAAACATTCAAATATAATCTATTTTAACCAAAAATGAAAAAGACTTTG
131 CTTCATGTTTTCCAATGCAAACATCCAAATATAATCTATTTTAACCAAAAACGAAAAAGACTTCG
1261112 A
196 A
* * *
1261113 TTTAACCAAAAACAAAAA-ATATTTCATTTGAAAATCATTTATAAACTCTAAAATCATTTAAAAC
1 TTTAACCAAAAACAAAAACAT-TTTCATTT-AAAATCACTTATAAACTATAAAATCATCTAAAAC
* ** *
1261177 AAGTAACAAGGCTTTCGAT-GCAATTGG-TGACAATAAACAG-AATTTTCTTGTCAATTGATGAC
64 AAGTAACAAGGCTTTCGATGGC-A-TGGATAACAATAAA-AGAAATTTTCTCATCAATGGATGAC
* * * * * *
1261239 ATTGATTTCATGTTTTCCAATGCAAACATCCAAATATAATCTGTTTTAATCAAAAACGAAGAGGA
126 ATCGACTTCATGTTTTCCAATGCAAACATCCAAATATAATCTATTTTAACCAAAAACGAAAAAGA
1261304 CTTCGA
191 CTTCGA
1261310 TTTAA
1 TTTAA
1261315 AATCAGTAGA
Statistics
Matches: 170, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
195 2 0.01
196 26 0.15
197 138 0.81
198 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (196 bp):
TTTAACCAAAAACAAAAACATTTTCATTTAAAATCACTTATAAACTATAAAATCATCTAAAACAA
GTAACAAGGCTTTCGATGGCATGGATAACAATAAAAGAAATTTTCTCATCAATGGATGACATCGA
CTTCATGTTTTCCAATGCAAACATCCAAATATAATCTATTTTAACCAAAAACGAAAAAGACTTCG
A
Found at i:1261713 original size:170 final size:169
Alignment explanation
Indices: 1261113--1263313 Score: 706
Period size: 170 Copynumber: 13.0 Consensus size: 169
1261103 AAGACTTTGA
* * * * *
1261113 TTTAACCAAAAACAAAAA-ATATTTCATTTGAAAATCATTTATAA-ACTCTAAAA-TCATTTAAA
1 TTTAA-CAAAAACAAAAAGAT-TTTGATTT-AAAATCATTTATAAGATTATAAAACT-ACTCAAA
* * * * * *
1261175 ACAAGTAACAAGGCTTTC-GATGCAATTG-GTGACAATAAACAGAATTTTCTTGTCAATTGAT-G
62 GCAAGTAAC-AGGCTTTCAAAGGC-A-TGAGTGACTATAAATAGAATTTTCTTGTCAATGGATAG
* *
1261237 ACATTGATTTCATGTTT-TCCAATGCAAACATCCAAATATAATCT-GT
124 -CATTCACTTCATGTTTCT-CAATGCAAACATCCAAATATAATCTAGT
* * * * * * ** *
1261283 TTTAATCAAAAACGAAGAGGACTTCGATTTAAAATCA-GTAGAACTTTATAAAACTACTTAAAGC
1 TTTAA-CAAAAAC-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGC
* * * * * *
1261347 AAGTAACATGGATTTCAAAGGCATAAGTAACTATAAATAGACTTTT-TTAATCAATGGATAGCTT
64 AAGTAACA-GGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTT-GTCAATGGATAGCAT
** * * * *
1261411 TTGCTTCATGTTTCTCGATGCAAATATCC-AATAATGATCTA-C
127 TCACTTCATGTTTCTCAATGCAAACATCCAAAT-ATAATCTAGT
* * * *
1261453 TTTAAC--TAA-AAAAA-ATTTTGATTTAAAATTATTTATAA-ATTATAAAA-TCATTTACAATG
1 TTTAACAAAAACAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACT-A-CT-CAAAG
** * * * * *
1261512 --AGTAACAAGGCTTTTGATGGCATGGGTGACTATGAATAGAATTTTCTTGTCAATTGATATCAT
63 CAAGTAAC-AGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCAATGGATAGCAT
* *
1261575 CCACTTCATGTTT-TACAATGCAAACATCCAAATAT-ATTTAGT
127 TCACTTCATGTTTCT-CAATGCAAACATCCAAATATAATCTAGT
* * *
1261617 TTTAACCAAAACAAAAAGGATTTTGATTTCAAATCATTTATAAGTTTATAAAACTACTCAAAGCA
1 TTTAACAAAAACAAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGCA
* * * * ** *
1261682 AATAACTAGGCTTTCAAAGACATGAGTGACTATAAATGGACTTTTCTT-TCAAATGGAGGGCATA
65 AGTAAC-AGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTC-AATGGATAGCATT
* ** * ** * * *
1261746 CACTTCACGTTTCTTGATGCAAATATTGAAATAT-GTTTTGT
128 CACTTCATGTTTCTCAATGCAAACATCCAAATATAATCTAGT
* * *
1261787 TTTAACTAAAAACAAAGAAGATTTTGATTTAAAATTATTTATAAGATTATAAAACCT-TTTAAAG
1 TTTAAC-AAAAACAAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAA-CTACTCAAAG
* * ** * ** * * * *
1261851 CGAGTAACTAAGCTTTTTATGGTGTGAATGACTATAAAT-GAACTTTT-TCTATCAACGGATGGC
63 CAAGTAAC-AGGCTTTCAAAGGCATGAGTGACTATAAATAGAA-TTTTCT-TGTCAATGGATAGC
* * * * * * *
1261914 ATCCACTTCATGTTTC-CTGATGCAAACAT-CTAATTTTAT-TTGA
125 ATTCACTTCATGTTTCTC-AATGCAAACATCCAAATATAATCTAGT
* * * * * * * *
1261957 TTTAACAAAAACTAAAAAATATTTTGATTT-AAACCATTTATAAGACTAGAAAACCATTTAAAAC
1 TTTAACAAAAAC--AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGC
* * ** ** * * * * ** *
1262021 AAGCAATAAGATTTTTGAAGGCATGAATGACTATCAATGGACTTTTCTTGTCAATAAATTA-CTT
64 AAGTAA-CAGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCAATGGA-TAGCAT
*** * * ** * * *
1262085 TTGTTTTATGTTTTTTGATGTAAAAATCC-AATGATGATCT-GT
127 TCACTTCATGTTTCTCAATGCAAACATCCAAAT-ATAATCTAGT
* * * * * * *
1262127 TTTAACTGAAAAAGAATAATATTTTTG-TTTAAAATCATTTATAA-ATAATAAAA-TCAATTAAT
1 TTTAAC--AAAAACAAAAAGA-TTTTGATTTAAAATCATTTATAAGATTATAAAACT-ACTCAAA
* * * * * * * * * *
1262189 GCAAGTAACAAGCTTTTTGATA-GCATGGGTGACTATAAATGGAATTTTCTTATTAATGGGTGGT
62 GCAAGTAACAGGC--TTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCAATGGATAGC
** * * * *
1262253 ATTTGCTGCATGTTTC-CTAATGAAAACATTCAAATGTAATCT-GT
125 ATTCACTTCATGTTTCTC-AATGCAAACATCCAAATATAATCTAGT
* * * * * *
1262297 TTTAACAAAAATAAAAAGGATTTTGATTTAAAATCTTTTATAAGACTATAAAACTATTTAAAGTA
1 TTTAACAAAAACAAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGCA
* * * * * * * * * *
1262362 AGTAATAAGGC-TTCTGAAGCCATAAGAGACTATAAATGGACTTTT-TTGGTCAA-CGAAAGGAA
65 AGTAA-CAGGCTTTC-AAAGGCATGAGTGACTATAAATAGAATTTTCTT-GTCAATGGATA-GCA
* * * *
1262424 TCCATTTCATGTTTC-CAGATGCAAACATCCAAATATGATTTA-T
126 TTCACTTCATGTTTCTCA-ATGCAAACATCCAAATATAATCTAGT
* * ** ** * ** * * *
1262467 TTCAACCAAAAATGAAAAACCTTTCAATTTAAAATCATTTATAATATTGCAACA-TCATTTAAAG
1 TTTAA-CAAAAA-CAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACT-ACTCAAAG
** * * * * * * * * * *
1262531 TGAGTAAGTACGCTTTTAATGGCATGAGTGACTCTAAATGGACTTTTTTTAT-ATATGGATGGCA
63 CAAGTAA-CAGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCA-ATGGATAGCA
* * ** * * * * * *
1262595 TCCA-TTACATTTTTCTTGATGCAAATATCCAATTTTGA-CAAAT
126 TTCACTT-CATGTTTCTCAATGCAAACATCCAAATATAATCTAGT
*** * * * * *
1262638 TTTAACAAAAAACAAAAAAGATTTTGGCAT-AAATCGTTTCTAAAATTATAAAACTA-TGTAATG
1 TTTAAC-AAAAAC-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTACT-CAAAG
* * * * * * ** * * * *
1262701 CAAGTAATGATGCTTTCAAGGGCATGAATCACTATAAATGGTCTTTTTTTGTCAAT-CATTGACT
63 CAAGTAA-CAGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCAATGGATAG-CA
* * * *
1262765 TTCACTTCATATTTC-CTAATGCAAACATTCAATTATAAACT-GT
126 TTCACTTCATGTTTCTC-AATGCAAACATCCAAATATAATCTAGT
* * * * * * * *
1262808 TTTAACTAAAAATGAAAAAGATGTTAATTTAAAATCATTTATCAGATTATAAAACAAGTTAAAGT
1 TTTAAC-AAAAA-CAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGC
* * * * * * *
1262873 GAGTAACTAGGCTTTCGATGGCATGAGTGACTATAAGT-GAACTTTCATTATCAATGGATGGCAT
64 AAGTAAC-AGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTC-TTGTCAATGGATAGCAT
* * * * * * * * *
1262937 CTGC-TTTACAT-TTTAT-GATGCAAACAT-CTAGTTTTATTTGGT
127 -T-CACTT-CATGTTTCTCAATGCAAACATCCAAATATAATCTAGT
* * * * * *
1262979 TTTAACAAAAACTAAAATAAATTTTGATTTAAAACCCA-TTATAAGATTATAAAACCATTAAAAT
1 TTTAACAAAAAC-AAAA-AGATTTTGATTTAAAA-TCATTTATAAGATTATAAAACTACTCAAAG
* * * * * * * *
1263043 CAAGTAATATGGCTTTCGAAGGTATAAGTGACTATAAAT-GCACTTTCCTTGTTAATGGATAGCT
63 CAAGTAACA-GGCTTTCAAAGGCATGAGTGACTATAAATAG-AATTTTCTTGTCAATGGATAGCA
** * * * * * *
1263107 TTTGCTTCACGTTTCTGAATGCAAACATCTAATTATGATAT-GT
126 TTCACTTCATGTTTCTCAATGCAAACATCCAAATATAATCTAGT
* * * *
1263150 TTTAACTAAAAACAAAAAATATTTTGATTTAAAATTATTTATAA-ATTATAAAA-TCATTTAAAG
1 TTTAAC-AAAAAC-AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACT-ACTCAAAG
* * * * * * *
1263213 CAATTAACAAAGCTTTCAATGGCATG-GATGACTATAAATGGAAATTTCTTTTC--TGGTGATGG
63 CAAGTAAC-AGGCTTTCAAAGGCATGAG-TGACTATAAATAGAATTTTCTTGTCAAT-G-GATAG
*
1263275 CA-TCTACTTCATGTTT-TCCAATGTAAACATCCAAATATA
124 CATTC-ACTTCATGTTTCT-CAATGCAAACATCCAAATATA
1263314 TTTTATTTTA
Statistics
Matches: 1496, Mismatches: 414, Indels: 242
0.70 0.19 0.11
Matches are distributed among these distances:
163 6 0.00
164 98 0.07
165 14 0.01
166 5 0.00
167 7 0.00
168 22 0.01
169 161 0.11
170 635 0.42
171 489 0.33
172 55 0.04
173 4 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (169 bp):
TTTAACAAAAACAAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACTACTCAAAGCAA
GTAACAGGCTTTCAAAGGCATGAGTGACTATAAATAGAATTTTCTTGTCAATGGATAGCATTCAC
TTCATGTTTCTCAATGCAAACATCCAAATATAATCTAGT
Found at i:1261767 original size:334 final size:331
Alignment explanation
Indices: 1261122--1262000 Score: 844
Period size: 334 Copynumber: 2.6 Consensus size: 331
1261112 ATTTAACCAA
* * * * *
1261122 AAACAAAAAATATTTCATTTGAAAATCATTTATAAACTCTAAAATCATTTAAAACAAGTAACAAG
1 AAACAAAAAAT-TTTGATTT-AAAATTATTTATAAATTATAAAATCATTT-AAACGAGTAACAAG
* * * * ** *
1261187 GCTTTCGAT-GCAATTGGTGACAATAAACAGAATTTTCTTGTCAATTGATGACATTGATTTCATG
63 GCTTTTGATGGC-ATGGGTGACTATAAATAGAATTTTCTTGTCAATTGAT-ACATCCACTTCATG
* * * * *
1261251 TTTTCCAATGCAAACATCCAAATATAATCTGTTTTAATCAAAAACGAAGAGGACTTCGATTTAAA
126 TTTTCCAATGCAAACATCCAAATAT-ATTTGTTTTAA-CAAAAACAAAAAGGATTTTGATTT-AA
* * * * * *
1261316 ATCA-GTAGAACTTTATAAAACTACTTAAAGCAAGTAACATGGATTTCAAAGGCATAAGTAACTA
188 ATCATTTATAAGTTTATAAAACTACTCAAAGCAAATAACATGGATTTCAAAGACATAAGTAACTA
* * *** *
1261380 TAAATAGACTTTTTTAATCAATGGATAGCTTTTGCTTCATGTTTCTCGATGCAAATATCC-AATA
253 TAAATAGACTTTTTT-ATCAATGGAGAGCATACACTTCACGTTTCTCGATGCAAATATCCAAAT-
1261444 ATGATCTACTTTAACT
316 ATGATCTACTTTAACT
*
1261460 -AA-AAAAAATTTTGATTTAAAATTATTTATAAATTATAAAATCATTTACAATGAGTAACAAGGC
1 AAACAAAAAATTTTGATTTAAAATTATTTATAAATTATAAAATCATTTA-AACGAGTAACAAGGC
*
1261523 TTTTGATGGCATGGGTGACTATGAATAGAATTTTCTTGTCAATTGATATCATCCACTTCATGTTT
65 TTTTGATGGCATGGGTGACTATAAATAGAATTTTCTTGTCAATTGATA-CATCCACTTCATGTTT
* *
1261588 TACAATGCAAACATCCAAATATATTTAGTTTTAACCAAAACAAAAAGGATTTTGATTTCAAATCA
129 TCCAATGCAAACATCCAAATATATTT-GTTTTAACAAAAACAAAAAGGATTTTGATTT-AAATCA
* * *
1261653 TTTATAAGTTTATAAAACTACTCAAAGCAAATAAC-TAGGCTTTCAAAGACATGAGTGACTATAA
192 TTTATAAGTTTATAAAACTACTCAAAGCAAATAACAT-GGATTTCAAAGACATAAGTAACTATAA
* * * **
1261717 ATGGACTTTTCTT-TCAAATGGAGGGCATACACTTCACGTTTCTTGATGCAAATATTGAAATATG
256 ATAGACTTTT-TTATC-AATGGAGAGCATACACTTCACGTTTCTCGATGCAAATATCCAAATATG
* * **
1261781 TTTTGTTTTAACT
319 ATCTACTTTAACT
* *
1261794 AAAAACAAAGAAGATTTTGATTTAAAATTATTTATAAGATTATAAAACCTTTTAAAGCGAGTAAC
1 --AAACAAA-AA-ATTTTGATTTAAAATTATTTATAA-ATTATAAAATCATTTAAA-CGAGTAAC
* ** ** * ** *
1261859 TAA-GCTTTTTATGGTGTGAATGACTATAAAT-GAACTTTT-TCTATCAACGGATGGCATCCACT
60 -AAGGCTTTTGATGGCATGGGTGACTATAAATAGAA-TTTTCT-TGTCAATTGAT-ACATCCACT
* * * * * **
1261921 TCATG-TTTCCTGATGCAAACATCTAATTTTATTTGATTTAACAAAAACTAAAAAATATTTTGAT
121 TCATGTTTTCC-AATGCAAACATCCAAATATATTTGTTTTAACAAAAAC-AAAAAGGATTTTGAT
*
1261985 TTAAACCATTTATAAG
184 TTAAATCATTTATAAG
1262001 ACTAGAAAAC
Statistics
Matches: 449, Mismatches: 69, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
333 33 0.07
334 223 0.50
335 14 0.03
336 7 0.02
337 4 0.01
338 3 0.01
339 2 0.00
340 59 0.13
341 102 0.23
342 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.35
Consensus pattern (331 bp):
AAACAAAAAATTTTGATTTAAAATTATTTATAAATTATAAAATCATTTAAACGAGTAACAAGGCT
TTTGATGGCATGGGTGACTATAAATAGAATTTTCTTGTCAATTGATACATCCACTTCATGTTTTC
CAATGCAAACATCCAAATATATTTGTTTTAACAAAAACAAAAAGGATTTTGATTTAAATCATTTA
TAAGTTTATAAAACTACTCAAAGCAAATAACATGGATTTCAAAGACATAAGTAACTATAAATAGA
CTTTTTTATCAATGGAGAGCATACACTTCACGTTTCTCGATGCAAATATCCAAATATGATCTACT
TTAACT
Found at i:1261885 original size:171 final size:168
Alignment explanation
Indices: 1261461--1263290 Score: 869
Period size: 170 Copynumber: 10.8 Consensus size: 168
1261451 ACTTTAACTA
* * *
1261461 AAAAAAATTTTGATTTAAAATTATTTATAA-ATTATAAAATCATTTACAATG--AGTAAC-AAGG
1 AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTA-AA-GCAAGTAACTAA-G
* * ** * * * * **
1261522 CTTTTGATGGCATGGGTGACTATGAATAGAATTTTCTTGTCAATTGATATCATCCACTTCATGTT
63 CTTTTTAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCCACTTCATGTT
** * * *
1261587 T-TACAATGCAAACATCCAAATATATTTAGTTTTAACCAAAAC
128 TCT-TGATGCAAACAT-TAAATATATTTTGTTTTAACAAAAAC
* * * * * * *
1261629 AAAAAGGATTTTGATTTCAAATCATTTATAAGTTTATAAAACTACTCAAAGCAAATAACTAGGCT
1 AAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCT
** * * * * *
1261694 TTCAAAGACATGAGTGACTATAAATGGACTTTTCTT-TCAAATGGAGGGCATACACTTCACGTTT
65 TTTTAAGGCATGAATGACTATAAATGGACTTTTCTTGTC-AATGGATGGCATCCACTTCATGTTT
* *
1261758 CTTGATGCAAATATTGAAATATGTTTTGTTTTAACTAAAAAC
129 CTTGATGCAAACATT-AAATATATTTTGTTTTAAC-AAAAAC
* * *
1261800 AAAGAAGATTTTGATTTAAAATTATTTATAAGATTATAAAACCTTTTAAAGCGAGTAACTAAGCT
1 AAA-AAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCT
* ** * * *
1261865 TTTTATGGTGTGAATGACTATAAATGAACTTTT-TCTATCAACGGATGGCATCCACTTCATGTTT
65 TTTTAAGGCATGAATGACTATAAATGGACTTTTCT-TGTCAATGGATGGCATCCACTTCATGTTT
* * * *
1261929 CCTGATGCAAACATCTAATTTTA-TTTGATTTAACAAAAAC
129 CTTGATGCAAACAT-TAAATATATTTTGTTTTAACAAAAAC
* * * * * * *
1261969 TAAAAAATATTTTGATTT-AAACCATTTATAAGACTAGAAAACCATTTAAAACAAGCAA-TAAGA
1 --AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGC
* ** ** * **** *
1262032 TTTTTGAAGGCATGAATGACTATCAATGGACTTTTCTTGTCAATAAATTACTTTTGTTTTATGTT
64 TTTTT-AAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCCACTTCATGTT
* * * ** * *
1262097 TTTTGATGTAAAAATCCAATGATGA-TCTGTTTTAACTGAAAAAG
128 TCTTGATGCAAACATTAAAT-AT-ATTTTGTTTTAAC--AAAAAC
* * * * * *
1262141 AATAATATTTTTG-TTTAAAATCATTTATAA-ATAATAAAATCAATTAATGCAAGTAAC-AAGCT
1 AAAAAGA-TTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCT
** * * * * * *** *
1262203 TTTTGATA-GCATGGGTGACTATAAATGGAATTTTCTTATTAATGGGTGGTATTTGCTGCATGTT
65 TTTT-A-AGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCCACTTCATGTT
* * * * * * *
1262267 TCCTAATGAAAACATTCAAATGTAATCTGTTTTAACAAAAAT
128 TCTTGATGCAAACATT-AAATATATTTTGTTTTAACAAAAAC
* * * *
1262309 AAAAAGGATTTTGATTTAAAATCTTTTATAAGACTATAAAACTATTTAAAGTAAGTAA-TAAGGC
1 AAAAA-GATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAA-GC
* * * * * * * * *
1262373 TTCTGAAGCCAT-AAGAGACTATAAATGGACTTTT-TTGGTCAACGAAAGGAATCCATTTCATGT
64 TTTTTAAGGCATGAA-TGACTATAAATGGACTTTTCTT-GTCAATGGATGGCATCCACTTCATGT
** * * * *
1262436 TTCCAGATGCAAACATCCAAATATGA-TTTATTTCAACCAAAAATG
127 TTCTTGATGCAAACAT-TAAATAT-ATTTTGTTTTAA-CAAAAA-C
** ** * ** * * ** * *
1262481 AAAAACCTTTCAATTTAAAATCATTTATAATATTGCAACATCATTTAAAGTGAGTAAGTACGC-T
1 AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCTT
* * * * *
1262545 TTTAATGGCATGAGTGACTCTAAATGGACTTTTTTTAT-ATATGGATGGCATCCA-TTACATTTT
66 TTTAA-GGCATGAATGACTATAAATGGACTTTTCTTGTCA-ATGGATGGCATCCACTT-CATGTT
* ** ***
1262608 TCTTGATGCAAATATCCAAT-T-TTGACAAATTTTAACAAAAAAC
128 TCTTGATGCAAACATTAAATATATT---TTGTTTTAAC-AAAAAC
*** * * * * * * *
1262651 AAAAAAGATTTTGGCAT-AAATCGTTTCTAAAATTATAAAACTATGTAATGCAAGTAA-TGATGC
1 -AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACT-AAGC
* * * * * * * * *
1262714 -TTTCAAGGGCATGAATCACTATAAATGGTCTTTTTTTGTCAAT-CATTGACTTTCACTTCATAT
64 TTTTTAA-GGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGA-TGGCATCCACTTCATGT
* * * *** *
1262777 TTCCTAATGCAAACATTCAATTATAAACTGTTTTAACTAAAAATG
127 TTCTTGATGCAAACATT-AAATATATTTTGTTTTAAC-AAAAA-C
* * * * * ** *
1262822 AAAAAGATGTTAATTTAAAATCATTTATCAGATTATAAAACAAGTTAAAGTGAGTAACTAGGCTT
1 AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCTT
** * * * * * **
1262887 TCGATGGCATGAGTGACTATAAGTGAAC-TTTCATTATCAATGGATGGCATCTGCTTTACAT-TT
66 TTTAAGGCATGAATGACTATAAATGGACTTTTC-TTGTCAATGGATGGCATCCAC-TT-CATGTT
* ** * *
1262950 T-ATGATGCAAACATCTAGTTTTATTTGGTTTTAACAAAAAC
128 TCTTGATGCAAACAT-TAAATATATTTTGTTTTAACAAAAAC
* * * * *
1262991 TAAAATAAATTTTGATTTAAAACCCA-TTATAAGATTATAAAACCATTAAAATCAAGTAA-TATG
1 -AAAA-AGATTTTGATTTAAAA-TCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTA-A
** * * * * * * *** *
1263054 GCTTTCGAAGGTAT-AAGTGACTATAAATGCACTTTCCTTGTTAATGGATAGCTTTTGCTTCACG
62 GCTTTTTAAGGCATGAA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCCACTTCATG
* *
1263118 TTTC-TGAATGCAAACATCTAATTATGA-TATGTTTTAACTAAAAAC
126 TTTCTTG-ATGCAAACAT-TAAATAT-ATTTTGTTTTAAC-AAAAAC
* * * * *
1263163 AAAAAATATTTTGATTTAAAATTATTTATAA-ATTATAAAATCATTTAAAGCAATTAACAAAGC-
1 -AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCT
* * ** * *
1263226 TTTCAATGGCATGGATGACTATAAATGGAAATTTCTTTTC--TGGTGATGGCATCTACTTCATGT
65 TTTTAA-GGCATGAATGACTATAAATGGACTTTTCTTGTCAAT-G-GATGGCATCCACTTCATGT
1263289 TT
127 TT
1263291 TCCAATGTAA
Statistics
Matches: 1235, Mismatches: 343, Indels: 166
0.71 0.20 0.10
Matches are distributed among these distances:
168 33 0.03
169 147 0.12
170 515 0.42
171 489 0.40
172 48 0.04
173 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (168 bp):
AAAAAGATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAAGCTT
TTTAAGGCATGAATGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCT
TGATGCAAACATTAAATATATTTTGTTTTAACAAAAAC
Found at i:1263200 original size:341 final size:334
Alignment explanation
Indices: 1261328--1263262 Score: 1223
Period size: 341 Copynumber: 5.7 Consensus size: 334
1261318 CAGTAGAACT
* * * * * * *
1261328 TTATAAAACTACTT-AAAGCAAGTAACATGGATTTCAAAGGCATAAGTAACTATAAATAGACTTT
1 TTATAAAACTATTTAAAATCAAGTAATATGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTT
* * * * **
1261392 T-TTAATCAATGGATAGCTTTTGCTTCATGTTTCTCGATGCAAATATCCAATAATGATCTACTTT
66 TCTT-GTCAATGGATAGCTTTTGCTTCATGTTTCT-GATGCAAACATCCAATTATGATATGTTTT
*
1261456 AACT----AAAAAAA-ATTTTGATTTAAAATTATTTATAAATTATAAAATCATTTACAA-TGAGT
129 AACTAAAAAAAAAAAGATTTTGATTTAAAATCATTTATAAATTATAAAA-CATTTA-AAGTGAGT
* * * * * **
1261515 AAC-AAGGCTTTTGATGGCATGGGTGACTATGAATAGAATTTTCTTGTCAATTGATATCATCCAC
192 AACTAA-GCTTTTGATGGCATGAGTGACTATAAAT-GAACTTTCTTATCAATGGATGGCATCCAC
* ** * * * *
1261579 TT-CATGTTTTACAATGCAAACATCCAAATATATTTAGTTTTAACCAAAAC-AAAAAGGATTTTG
255 TTACAT-TTTCATGATGCAAACATCCAATTTTATTT-GTTTTAACAAAAACTAAAAA-AATTTTG
* *
1261642 ATTTCAAATCATTTATAAGT
317 ATTT-AAACCA-TTATAAGA
* * * * * * *
1261662 TTATAAAACTA-CTCAAAGCAAATAACTA-GGCTTTCAAAGACATGAGTGACTATAAATGGACTT
1 TTATAAAACTATTTAAAATCAAGTAA-TATGGCTTTCGAAGGCATAAGTGACTATAAATGGACTT
** * *** * * ** * * *
1261725 TTCTT-TCAAATGGAGGGCATACACTTCACGTTTCTTGATGCAAATATTGAAATATGTTTTGTTT
65 TTCTTGTC-AATGGATAGCTTTTGCTTCATGTTTC-TGATGCAAACATCCAATTATGATATGTTT
* * * *
1261789 TAACTAAAAACAAAGAAGATTTTGATTTAAAATTATTTATAAGATTATAAAACCTTTTAAAGCGA
128 TAACTAAAAA-AAAAAAGATTTTGATTTAAAATCATTTATAA-ATTATAAAA-CATTTAAAGTGA
* ** * * *
1261854 GTAACTAAGCTTTTTATGGTGTGAATGACTATAAATGAACTTTTTCTATCAACGGATGGCATCCA
190 GTAACTAAGCTTTTGATGGCATGAGTGACTATAAATGAACTTTCT-TATCAATGGATGGCATCCA
* * *
1261919 CTT-CATGTTTCCTGATGCAAACATCTAATTTTATTTGATTTAACAAAAACTAAAAAATATTTTG
254 CTTACAT-TTTCATGATGCAAACATCCAATTTTATTTGTTTTAACAAAAACTAAAAAA-ATTTTG
1261983 ATTTAAACCATTTATAAGA
317 ATTTAAACCA-TTATAAGA
* * * * * ** * *
1262002 CTAGAAAACCATTTAAAA-CAAGCAATAAGATTTTTGAAGGCATGAA-TGACTATCAATGGACTT
1 TTATAAAACTATTTAAAATCAAGTAATATGGCTTTCGAAGGCAT-AAGTGACTATAAATGGACTT
** * * * * * * *
1262065 TTCTTGTCAATAAATTA-CTTTTGTTTTATGTTTTTTGATGTAAAAATCCAATGATGATCTGTTT
65 TTCTTGTCAATGGA-TAGCTTTTGCTTCATG-TTTCTGATGCAAACATCCAATTATGATATGTTT
* * * * * * **
1262129 TAACTGAAAAAGAATAATATTTTTG-TTTAAAATCATTTATAAATAATAAAATCAATTAATGCAA
128 TAACT-AAAAAAAAAAAGA-TTTTGATTTAAAATCATTTATAAATTATAAAA-CATTTAAAGTGA
* * * * * * **
1262193 GTAAC-AAGCTTTTTGATAGCATGGGTGACTATAAATGGAATTTTCTTATTAATGGGTGGTATTT
190 GTAACTAAGC-TTTTGATGGCATGAGTGACTATAAAT-GAACTTTCTTATCAATGGATGGCATCC
* * * * * * * * * *
1262257 GC-TGCATGTTTCCTAATGAAAACATTCAAATGTAATCTGTTTTAACAAAAA-TAAAAAGGATTT
253 ACTTACAT-TTTCATGATGCAAACA-TCCAATTTTATTTGTTTTAACAAAAACTAAAAA-AATTT
**
1262320 TGATTTAAAATCTTTTATAAGA
315 TGATTT-AAA-CCATTATAAGA
* * * * *
1262342 CTATAAAACTATTTAAAGT-AAGTAATAAGGC-TTCTGAAGCCATAAGAGACTATAAATGGACTT
1 TTATAAAACTATTTAAAATCAAGTAATATGGCTTTC-GAAGGCATAAGTGACTATAAATGGACTT
* * *** * * * * *
1262405 TT-TTGGTCAA-CGAAAG-GAATCCATTTCATGTTTCCAGATGCAAACATCCAAATATGATTTAT
65 TTCTT-GTCAATGGATAGCTTTTGC--TTCATGTTT-CTGATGCAAACATCCAATTATGATATGT
* * * ** ** ** *
1262467 TTCAACCAAAAATGAAAAACCTTTCAATTTAAAATCATTTATAATATTGCAACATCATTTAAAGT
126 TTTAACTAAAAA-AAAAAAGATTTTGATTTAAAATCATTTATAA-ATTATAA-AACATTTAAAGT
* * * * * *
1262532 GAGTAAGTACGCTTTTAATGGCATGAGTGACTCTAAATGGACTTTTTTTAT-ATATGGATGGCAT
188 GAGTAACTAAGCTTTTGATGGCATGAGTGACTATAAATGAAC-TTTCTTATCA-ATGGATGGCAT
* * ****
1262596 CCA-TTACATTTTTCTTGATGCAAATATCCAATTTTGACAAATTTTAACAAAAAAC-AAAAAAGA
251 CCACTTACA-TTTTCATGATGCAAACATCCAATTTT-ATTTGTTTTAAC-AAAAACTAAAAAA-A
*** ** * *
1262659 TTTTGGCATAAATCGTTTCTAAAA
312 TTTTGATTTAAA-CCATTATAAGA
* * *
1262683 TTATAAAACTATGT--AATGCAAGTAATGAT-GCTTTC-AAGGGCATGAA-TCACTATAAATGGT
1 TTATAAAACTATTTAAAAT-CAAGTAAT-ATGGCTTTCGAA-GGCAT-AAGTGACTATAAATGGA
* * * ** * * * *
1262743 CTTTTTTTGTCAAT-CATTGACTTTCACTTCATATTTCCTAATGCAAACATTCAATTAT-AAACT
62 CTTTTCTTGTCAATGGATAG-CTTTTGCTTCATGTTT-CTGATGCAAACATCCAATTATGATA-T
* * * * *
1262806 GTTTTAACTAAAAATGAAAAAGATGTTAATTTAAAATCATTTATCAGATTATAAAACAAGTTAAA
124 GTTTTAACTAAAAA-AAAAAAGATTTTGATTTAAAATCATTTAT-AAATTATAAAAC-ATTTAAA
* * *
1262871 GTGAGTAACTAGGCTTTCGATGGCATGAGTGACTATAAGTGAACTTTCATTATCAATGGATGGCA
186 GTGAGTAACTAAGCTTTTGATGGCATGAGTGACTATAAATGAACTTTC-TTATCAATGGATGGCA
** * *
1262936 TCTGCTTTACATTTT-ATGATGCAAACATCTAGTTTTATTTGGTTTTAACAAAAACTAAAATAAA
250 TCCAC-TTACATTTTCATGATGCAAACATCCAATTTTATTT-GTTTTAACAAAAACTAAAA-AAA
1263000 TTTTGATTTAAAACCCATTATAAGA
312 TTTTGATTT-AAA-CCATTATAAGA
* * *
1263025 TTATAAAACCA-TTAAAATCAAGTAATATGGCTTTCGAAGGTATAAGTGACTATAAATGCACTTT
1 TTATAAAACTATTTAAAATCAAGTAATATGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTT
* * * *
1263089 CCTTGTTAATGGATAGCTTTTGCTTCACGTTTCTGAATGCAAACATCTAATTATGATATGTTTTA
66 TCTTGTCAATGGATAGCTTTTGCTTCATGTTTCTG-ATGCAAACATCCAATTATGATATGTTTTA
* * ** *
1263154 ACTAAAAACAAAAAATATTTTGATTTAAAATTATTTATAAATTATAAAATCATTTAAAGCAATTA
130 ACTAAAAA-AAAAAAGATTTTGATTTAAAATCATTTATAAATTATAAAA-CATTTAAAGTGAGTA
* ** *
1263219 ACAAAGCTTTCAATGGCATG-GATGACTATAAATGGAAATTTCTT
193 ACTAAGCTTTTGATGGCATGAG-TGACTATAAAT-GAACTTTCTT
1263263 TTCTGGTGAT
Statistics
Matches: 1224, Mismatches: 292, Indels: 163
0.73 0.17 0.10
Matches are distributed among these distances:
333 3 0.00
334 97 0.08
335 4 0.00
338 8 0.01
339 115 0.09
340 328 0.27
341 478 0.39
342 175 0.14
343 16 0.01
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (334 bp):
TTATAAAACTATTTAAAATCAAGTAATATGGCTTTCGAAGGCATAAGTGACTATAAATGGACTTT
TCTTGTCAATGGATAGCTTTTGCTTCATGTTTCTGATGCAAACATCCAATTATGATATGTTTTAA
CTAAAAAAAAAAAGATTTTGATTTAAAATCATTTATAAATTATAAAACATTTAAAGTGAGTAACT
AAGCTTTTGATGGCATGAGTGACTATAAATGAACTTTCTTATCAATGGATGGCATCCACTTACAT
TTTCATGATGCAAACATCCAATTTTATTTGTTTTAACAAAAACTAAAAAAATTTTGATTTAAACC
ATTATAAGA
Found at i:1265284 original size:17 final size:17
Alignment explanation
Indices: 1265267--1265321 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
1265257 TCTCCCGTTC
1265267 TCTCCTTCCTTTCTTTCT
1 TCTCCTT-CTTTCTTTCT
* *
1265285 TTTTCTTCTTTCTTTCT
1 TCTCCTTCTTTCTTTCT
*
1265302 TCTCCTT-TCTCTTCTCT
1 TCTCCTTCTTTCTT-TCT
1265319 TCT
1 TCT
1265322 TGGTAGTGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 5 0.16
17 21 0.68
18 5 0.16
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (17 bp):
TCTCCTTCTTTCTTTCT
Found at i:1265299 original size:21 final size:24
Alignment explanation
Indices: 1265275--1265322 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
1265265 TCTCTCCTTC
*
1265275 CTTTCTT-T-CTTTTTCTTCT-TT
1 CTTTCTTCTCCTTTCTCTTCTCTT
1265296 CTTTCTTCTCCTTTCTCTTCTCTT
1 CTTTCTTCTCCTTTCTCTTCTCTT
1265320 CTT
1 CTT
1265323 GGTAGTGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 1 0.04
23 10 0.43
24 5 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (24 bp):
CTTTCTTCTCCTTTCTCTTCTCTT
Found at i:1265309 original size:14 final size:14
Alignment explanation
Indices: 1265279--1265316 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
1265269 TCCTTCCTTT
*
1265279 CTTTCTTT-TTCTT
1 CTTTCTTTCTTCTC
1265292 CTTTCTTTCTTCTC
1 CTTTCTTTCTTCTC
1265306 CTTTCTCTTCT
1 CTTTCT-TTCT
1265317 CTTCTTGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.36
14 10 0.45
15 4 0.18
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTCTTTCTTCTC
Found at i:1266849 original size:171 final size:169
Alignment explanation
Indices: 1266361--1267502 Score: 762
Period size: 171 Copynumber: 6.7 Consensus size: 169
1266351 CCAATGGTAA
* * * * * * * *
1266361 GCATCTGCTTCATGTTTCTTGAAGCAAACATCTAAATATAATCTG-TTTTAACTAAAA-ACAAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATC-CAATTTTATTTGATTTTAACCAAAACA-AAAA
* * * *
1266424 ATGATTTTGATTTAAAATCATTTATAAAATTATAAAATTATTTAAAGTGTA-TCACAAGGTTTTC
64 AT-ATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTG-AGTAACAAGGCTTTC
* * * * *
1266488 -AATTGTATGAGTTACTATAAATAGACTTTTCCTATCAATAGATG
127 GAA--GCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG
* ** *
1266532 GCATTTGTTTTATGTTTCTTGATGCAAACATCCAATTTTATTTGATTTTAACAAAAACTAAAAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATCCAATTTTATTTGATTTTAACCAAAAC-AAAAAA
* * * * * * * *
1266597 TATTTTGATTTAAAACCAATTATAAGATTAT-AAATCCATTAAAATTGAGCAATAGGGCTTCCGA
65 TATTTTGATTTAAAATCATTTATAAGATTATAAAAT-CATTTAAAGTGAGTAACAAGGCTTTCGA
* * *
1266661 ATGCGTAAGTGACTATAAATAGACTTTTCTTGTCAACGGATG
129 A-GCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG
* * * * *
1266703 GCATCTGCTTTATGTTCCTTGATACAAATATCCAATTTTGA-TCGATTTTAACCAAACACAAAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATCCAATTTT-ATTTGATTTTAACCAAA-ACAAAAA
* * * * * *
1266767 AGATTTTCG-TTTAAAATTATTTATAAGATTATAAAATCATGTAACGTGAGTAACGAGGTTTTCG
64 ATATTTT-GATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCG
* * * * *
1266831 AAGACATGATTCACTATAAATGGTCTTTTCTTATCAATCGG-TG
128 AAG-CATGAGTGACTATAAATAGACTTTTCTTGTCAAT-GGATG
* * ** * * * * **
1266874 GCTTCCACTTTATGTTT-TCCAATGCAAACATCAAATTATGATATG-TTTCAACCAAAATTGAAA
1 GCATCTACTTTATGTTTCT-TGATGCAAACATCCAATT-TTATTTGATTTTAACCAAAA-CAAAA
* * * * *
1266937 AATATCTTGATTTAAAATCATTTATCAGATTATAAAATAATTTAAAGCGAGTAACTAGGCTTTCG
63 AATATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCG
* * *
1267002 ATGGCATGAGTGATTGTAAATTA-AC-TTTCTTGTCAATGGATG
128 A-AGCATGAGTGACTATAAA-TAGACTTTTCTTGTCAATGGATG
* **
1267044 GCATCTACTTCACATTTCTTGATGCAAACATCCAGA-TTTATTTGATTTTAACCAAAA-AAGAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATCCA-ATTTTATTTGATTTTAACCAAAACAA-AAA
* * * * *
1267107 ATATTTTTATTTAAAATAATTTATAAGATTTTAAAACCATTTAAAGTGAGTAACAAGGCTTTCAA
64 ATATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCGA
* *
1267172 AGGCATAAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATA
129 A-GCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATG
* * * * * * * ** * * **
1267214 GCATCCACCTCATGTTTCCTAATGCAAGCATCCAATAATTA-TCAATCTTAACTAAAATTGAAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATCCAAT-TTTATTTGATTTTAACCAAAA-CAAAAA
** * * * * * * ** *
1267278 ATATTTCAATTTAATATCA-TTATAAGATTATAATACCATTTAAACTAAGTGACAAGTATTTTGA
64 ATATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCGA
* * * * *
1267342 A-CAATTAACTAACTATAAATGGAC-TTTCTTTGTCAATGGATA
129 AGC-A-TGAGTGACTATAAATAGACTTTTC-TTGTCAATGGATG
* * * ** * * * **
1267384 GCTTTTGCTGCATGTTTCTTGATGCAAACATCCAATTATGATAT-AGTTTAACCCAAAATGAAAA
1 GCATCTACTTTATGTTTCTTGATGCAAACATCCAATT-TTATTTGATTTTAA-CCAAAACAAAAA
** * * * *
1267448 GGATTTTGAATTT-AATTCATTTATAA-ATCATAAAATCATTGAAAATGAGTAACAA
64 ATATTTTG-ATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAA
1267503 TACTTTTGAT
Statistics
Matches: 755, Mismatches: 175, Indels: 83
0.75 0.17 0.08
Matches are distributed among these distances:
168 3 0.00
169 87 0.12
170 256 0.34
171 385 0.51
172 23 0.03
173 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (169 bp):
GCATCTACTTTATGTTTCTTGATGCAAACATCCAATTTTATTTGATTTTAACCAAAACAAAAAAT
ATTTTGATTTAAAATCATTTATAAGATTATAAAATCATTTAAAGTGAGTAACAAGGCTTTCGAAG
CATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATG
Found at i:1267240 original size:340 final size:339
Alignment explanation
Indices: 1266686--1267310 Score: 746
Period size: 340 Copynumber: 1.8 Consensus size: 339
1266676 TAAATAGACT
* * ** *
1266686 TTTCTTGTCAACGGATGGCATCTGCTTTATGTTCCTTGATACAAATATCCAATTTTGATCGATTT
1 TTTCTTGTCAACGGATGGCATCTACTTCACATTCCTTGATACAAACATCCAATTTT-ATCGATTT
* * * *
1266751 TAACCAAACACAAAAAAGATTTTCGTTTAAAATTATTTATAAGATTATAAAATCATGTAACGTGA
65 TAACCAAACACAAAAAAGATTTTCATTTAAAATAATTTATAAGATTATAAAACCATGTAAAGTGA
* * * * * ** * *
1266816 GTAACGAGGTTTTCGAAGACATGATTCACTATAAATGGTCTTTTCTTATCAATCGGTGGCTTCCA
130 GTAACAAGGCTTTCAAAGACATAAGTCACTATAAATGAACTTTTCTTATCAATCGGTAGCATCCA
* * * *
1266881 CTTTATGTTTTCCAATGCAAACAT-C-A-AATTATGATATGTTTCAACCAAAATTGAAAAATATC
195 CCTCATGTTTTCCAATGCAAACATCCAATAATTATCA-AT-CTT-AACCAAAATTGAAAAATAT-
* *
1266943 TT-GATTTAAAATCATTTATCAGATTATAAAATAATTTAAAGCGAGTAACTAGGCTTTCGATGGC
256 TTCAATTTAAAATCA-TTATAAGATTATAAAATAATTTAAAGCGAGTAACTAGGCTTTCGATGGC
1267007 ATGAGTGATTGTAAATTAAC
320 ATGAGTGATTGTAAATTAAC
* * * *
1267027 TTTCTTGTCAATGGATGGCATCTACTTCACATTTCTTGATGCAAACATCCAGA-TTTATTTGATT
1 TTTCTTGTCAACGGATGGCATCTACTTCACATTCCTTGATACAAACATCCA-ATTTTA-TCGATT
* * * *
1267091 TTAACCAAA-A-AAGAAAATATTTTTATTTAAAATAATTTATAAGATTTTAAAACCATTTAAAGT
64 TTAACCAAACACAA-AAAAGATTTTCATTTAAAATAATTTATAAGATTATAAAACCATGTAAAGT
* * *
1267154 GAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGAACTTTTCTTGTCAAT-GGATAGCAT
128 GAGTAACAAGGCTTTCAAAGACATAAGTCACTATAAATGAACTTTTCTTATCAATCGG-TAGCAT
* *
1267218 CCACCTCATG-TTTCCTAATGCAAGCATCCAATAATTATCAATCTTAACTAAAATTGAAAAATAT
192 CCACCTCATGTTTTCC-AATGCAAACATCCAATAATTATCAATCTTAACCAAAATTGAAAAATAT
*
1267282 TTCAATTTAATATCATTATAAGATTATAA
256 TTCAATTTAAAATCATTATAAGATTATAA
1267311 TACCATTTAA
Statistics
Matches: 237, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
339 24 0.10
340 139 0.59
341 63 0.27
342 4 0.02
343 7 0.03
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (339 bp):
TTTCTTGTCAACGGATGGCATCTACTTCACATTCCTTGATACAAACATCCAATTTTATCGATTTT
AACCAAACACAAAAAAGATTTTCATTTAAAATAATTTATAAGATTATAAAACCATGTAAAGTGAG
TAACAAGGCTTTCAAAGACATAAGTCACTATAAATGAACTTTTCTTATCAATCGGTAGCATCCAC
CTCATGTTTTCCAATGCAAACATCCAATAATTATCAATCTTAACCAAAATTGAAAAATATTTCAA
TTTAAAATCATTATAAGATTATAAAATAATTTAAAGCGAGTAACTAGGCTTTCGATGGCATGAGT
GATTGTAAATTAAC
Found at i:1267303 original size:170 final size:170
Alignment explanation
Indices: 1266433--1268276 Score: 723
Period size: 171 Copynumber: 10.9 Consensus size: 170
1266423 AATGATTTTG
* ** * * * *
1266433 ATTTAAAATCATTTATAAAATTATAAAATTATTTAAAGTGTA-TCACAAGGTTTTC-AATTGTAT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG-AGTAACAAGGCTTTCGAA-GGCAT
* * * * **** * * *
1266496 GAGTTACTATAAAT-AGACTTTTCCTATCAATAGATGGCATTTGTTTTATGTTTCTTGATGCAAA
64 GAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAA
* ** * * * *
1266560 CATCCAAT-TTTATTTGATTTTAACAAAAACTAAAAAATATTTTG
128 CATCCAATAATTA-TCAATTTTAACCAAAATTGAAAAATA-TTTA
* * * * * * * * * * * *
1266604 ATTTAAAACCAATTATAAGATTATAAATCCATTAAAATTGAGCAATAGGGCTTCCGAATGCGTAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* ** * * * *
1266669 GTGACTATAAAT-AGACTTTTCTTGTCAACGGATGGCATCTGCTTTATG-TTCCTTGATACAAAT
66 GTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCC-TAATGCAAAC
* * ** * *
1266732 ATCCAAT-TTTGATCGATTTTAACCAAACA-CAAAAAAGATTTTC
129 ATCCAATAATT-ATCAATTTTAACCAAA-ATTGAAAAATA-TTTA
* * * * * * * *
1266775 GTTTAAAATTATTTATAAGATTATAAAATCATGTAACGTGAGTAACGAGGTTTTCGAAGACATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * ** * * *
1266840 TTCACTATAAATGGTCTTTTCTTATCAATCGG-TGGCTTCCACTTTATGTTTTCC-AATGCAAAC
66 GTGACTATAAATGAACTTTTCTTGTCAAT-GGATGGCATCCACTTCATG-TTTCCTAATGCAAAC
* *
1266903 AT-C-A-AATTATGATATGTTTCAACCAAAATTGAAAAATATCTTG
129 ATCCAATAATTATCA-AT-TTT-AACCAAAATTGAAAAATAT-TTA
* ** * * *
1266946 ATTTAAAATCATTTATCAGATTATAAAATAATTTAAAGCGAGTAACTAGGCTTTCGATGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * ** * *
1267011 GTGATTGTAAATTAAC-TTTCTTGTCAATGGATGGCATCTACTTCACATTTCTTGATGCAAACAT
66 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAACAT
** ** *
1267075 CCAGAT--TTATTTGATTTTAACCAAAAAAG-AAAATATTTTT
131 CCA-ATAATTA-TCAATTTTAACCAAAATTGAAAAATA-TTTA
* * * *
1267115 ATTTAAAATAATTTATAAGATTTTAAAACCATTTAAAGTGAGTAACAAGGCTTTCAAAGGCATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * *
1267180 GTGACTATAAATGAACTTTTCTTGTCAATGGATAGCATCCACCTCATGTTTCCTAATGCAAGCAT
66 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAACAT
* *
1267245 CCAATAATTATCAATCTTAACTAAAATTGAAAAATATTTCA
131 CCAATAATTATCAATTTTAACCAAAATTGAAAAATATTT-A
* * * * * ** *
1267286 ATTTAATATCA-TTATAAGATTATAATACCATTTAAACTAAGTGACAAGTATTTTGAA--CAATT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGC-A-T
* * * * * * *** * * *
1267348 AACTAACTATAAATGGAC-TTTCTTTGTCAATGGATAGCTTTTGCTGCATGTTTCTTGATGCAAA
64 GAGTGACTATAAATGAACTTTTC-TTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAA
* * *
1267412 CATCCAATTATGAT-ATAGTTTAACCCAAAA-TGAAAAGGAT-TTTGA
128 CATCCAATAATTATCA-ATTTTAA-CCAAAATTGAAAA--ATATTT-A
* * * * * **
1267457 ATTT-AATTCATTTATAA-ATCATAAAATCATTGAAAATGAGTAACAATACTTT--------TGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * * * *
1267512 -TG-CCATAAGTG-A------TTATCAATGGATGGCATCCACTTAATATTTCCCAATGAAAACAT
66 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAACAT
* * * * *** *
1267568 CCAA-ACGTAAACTATTTTAACCAAGAACAAAAAAGGATATCT-
131 CCAATA-ATTATCAATTTTAACCAA-AATTGAAAA--ATATTTA
* * ** *** *
1267610 ATTT-AAATCATTTATAAGATTATAAAATCATTTAATGCCAGTAATTGGGCTCTT--AATAGCAT
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCT-TTCGAA-GGCAT
* * * * * * ** *
1267672 GAGTGACTATAAA-GAGTCTTCTCTTGTCAACGGATGACATCCATTTTACATTTCTCGAA-GCAA
64 GAGTGACTATAAATGA-ACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTC-CTAATGCAA
* * ** * * *
1267735 ACATCTAAT-TTTAATTGATTTTAATCAAAAATGAAACAGAT-TTTT
127 ACATCCAATAATT-ATCAATTTTAACCAAAATTGAAA-A-ATATTTA
* * * * * * * * ** * *
1267780 ATTT-AAACCATTTTTCACATTATAAAGCCATTTAAAGCGAATAACAAAGCTCCCAAAGGCATGG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * * * * *
1267844 GTGACTAGAAATGAGCATCTCTTGTGAATGGATGGCTTCTATTTCATGTTTTCC-AATGCAAACA
66 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATG-TTTCCTAATGCAAACA
* * *** * * * *
1267908 TCTAA-ATATGATTTGTTTTAACAAAAAATGAGAACCAT-TTTG
130 TCCAATA-ATTATCAATTTTAACCAAAATTGA-AA-AATATTTA
* ** *** * *
1267950 ATTTAAAATCATTTATAAGATGATAAAACCATTTAAAGCAAGTAATTTGGCTTTTGATGGCATGA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
* * * * *** * *
1268015 GTGACTATAAATGGACCTTTCTTGTGAATGGATAGCATTTGCTTC-TTTTTGGCTAATGCAAACA
66 GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTT-CCTAATGCAAACA
** * * ** *
1268079 T-CAA-AATATGATCTGTTTGAATCAAAATCAAAAAATATTTTG
130 TCCAATAAT-T-ATCAATTTTAACCAAAATTGAAAAATA-TTTA
* * ** *
1268121 ACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGTGAGTAATTACGCTTTCGATA-GCATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGA-AGGCATG
* * * * * *
1268185 AGTGACTATTAATAAAC-TTTCTATGTTAATGGATGGCATCGACATCATGTTTTCTAATGCAAAC
65 AGTGACTATAAATGAACTTTTCT-TGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAAC
* * * * *
1268249 ATCAAATTATAATCGATTTTAACTAAAA
129 ATCCAATAATTATCAATTTTAACCAAAA
1268277 GCAAAAAAAA
Statistics
Matches: 1253, Mismatches: 335, Indels: 170
0.71 0.19 0.10
Matches are distributed among these distances:
152 4 0.00
153 61 0.05
154 30 0.02
155 4 0.00
159 1 0.00
160 7 0.01
161 1 0.00
162 5 0.00
163 3 0.00
164 5 0.00
168 3 0.00
169 106 0.08
170 385 0.31
171 608 0.49
172 22 0.02
173 8 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36
Consensus pattern (170 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTCGAAGGCATGA
GTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCCACTTCATGTTTCCTAATGCAAACAT
CCAATAATTATCAATTTTAACCAAAATTGAAAAATATTTA
Found at i:1268610 original size:169 final size:166
Alignment explanation
Indices: 1268283--1270476 Score: 976
Period size: 171 Copynumber: 13.0 Consensus size: 166
1268273 AAAAGCAAAA
* * * * * * *
1268283 AAAATCATTTAAAGTGAGTAACGAGGCTTTTGAAAGCATGAATAACTAAAAATGAACTTTTCTTG
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCG-AAGCATGAATGACTATAAATGGACTTTTCTTG
* * * * * * * *
1268348 TTAATAGATAGCTTTGCCTTCATGTTTTCTTATGAAAACATCCAATTATAATCTATTTTAACTAA
65 TCAATGGATGGTTTTG-CTTCATGTTTTCTAATG-AAACATCAAATTATGATTTATTTTAAC-AA
*
1268413 AAAA-AGAAAAAAATTTGATTTAAAATTATTTATAAATTAT
127 AAAACA-AAAAAATTTTGATTTAAAATTATTTATAAATTAT
* *
1268453 AAAATCATTTAAAGCAAGTAACAAAGCTTTCGAAGCATGAATGACTATAAATGGACTTTTTTTGT
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAAGCATGAATGACTATAAATGGACTTTTCTTGT
* * *
1268518 CAATGGATGGGTTTTGCTTCATGTTTT-TCAATGAAAGCATAAAATTATGATTTTTTTTAAGAAA
66 CAATGGAT-GGTTTTGCTTCATGTTTTCT-AATGAAA-CATCAAATTATGATTTATTTTAACAAA
* * * *
1268582 AAACAAAAAAGATTTTGACTTCAAATTATTTGTACATTAT
128 AAACAAAAAA-ATTTTGATTTAAAATTATTTATAAATTAT
* *
1268622 AAAATCCTTTAAAGCGAGTAA-AAGGCTTTCGAAGACAT-AAGTGACTATAAATGGACTTTTCTT
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAAG-CATGAA-TGACTATAAATGGACTTTTCTT
* * * * * * * *
1268685 ATCAATGTATGGTTTCCGCTTCATGTTTGCTGATGTAAACATCTAATTGTGATTTGTTTTAACAA
64 GTCAATGGATGGTTT-TGCTTCATGTTTTCTAATG-AAACATCAAATTATGATTTATTTTAACAA
* **
1268750 AAAATAAAAAATATTTTGACTTT-AAATTATTTATGTATTAT
127 AAAACAAAAAA-ATTTTGA-TTTAAAATTATTTATAAATTAT
* * * * *
1268791 AAAA-CTATTTAAAGCGAGTAAAAAAGTTTTCGAA-CATATGAGTGACTATAAATGAATTTTTCT
1 AAAATC-ATTTAAAGCGAGTAACAAAGCTTTCGAAGC--ATGAATGACTATAAATGGACTTTTCT
** ** * ** *
1268854 TGTCAATGGATGGTATTCACTTCA-CATTTCTCAATGTAAACATCCAAA-TATGATCTGCTTTGA
63 TGTCAATGGATGGT-TTTGCTTCATGTTTTCT-AATG-AAACAT-CAAATTATGATTTATTTTAA
* * * *
1268917 C-CAAAACTGAAAAATATTTTGATTTAAAATCATTTATAAGTTTAT
124 CAAAAAAC--AAAAAAATTTTGATTTAAAATTATTTATAA-ATTAT
* * * ** * *
1268962 AAAACCATTTAAAGCAAGTAAC-GAGACATTT-GTTGGCATGAGTGTCTATAAATGGACTTTTCT
1 AAAATCATTTAAAGCGAGTAACAAAG-C-TTTCG-AAGCATGAATGACTATAAATGGACTTTTCT
* ** * * * * *
1269025 TATCAATGGATAACTTTTGCTTCATGTTTCCTAATATAAACATCCAATTATGATTGATTTTAACC
63 TGTCAATGGAT-GGTTTTGCTTCATGTTTTCTAAT-GAAACATCAAATTATGATTTATTTTAACA
** * **
1269090 AAAAATGAAAAAATTTTCTATTTAAAACCATTTATAAGATTAT
126 AAAAACAAAAAAATTTT-GATTTAAAATTATTTATAA-ATTAT
* * * *
1269133 AAAA-CTATTAAAAGCGAGTAACAAAGCTTTCGAAGCCAAGAGTGACTATAAATAGACTTTTCTT
1 AAAATC-ATTTAAAGCGAGTAACAAAGCTTTCGAAG-CATGAATGACTATAAATGGACTTTTCTT
** * * * * *
1269197 GTCAATGGATGGCTTTCACTTCAAAT-TTATTGCT-A-CAAACATCCAATTATGATATGTGTTAA
64 GTCAATGGATGG-TTTTGCTTC--ATGTT-TT-CTAATGAAACATCAAATTATGATTTATTTTAA
*
1269259 TCAAAAATA-AAATAAATTTTGATTT--AA--A--TATAAATTAT
124 -CAAAAA-ACAAAAAAATTTTGATTTAAAATTATTTATAAATTAT
** * *
1269297 AAAAGAATTTAAAGCGAGTAACAACAGC-TTCGATTGC--GAAATGACTATAAATGGAATTTTCT
1 AAAATCATTTAAAGCGAGTAACAA-AGCTTTCGA-AGCATG-AATGACTATAAATGGACTTTTCT
* * * * ** * *
1269359 TGTCAATGGATTGTATTTCCTTCATGTTTTATAATGCAAACATC-CATATACAATATGTTTTAAC
63 TGTCAATGGATGGT-TTTGCTTCATGTTTTCTAATG-AAACATCAAAT-TATGATTTATTTTAAC
* *** ** * *
1269423 CAAAAACGAAAGGGATTTCAATTTAAAATCATTTATAAGTTTAT
125 AAAAAAC-AAAAAAATTTTGATTTAAAATTATTTATAA-ATTAT
** * * * * *
1269467 AAAA-CTATTTAAAGTAAGTAACAAGGCTGAT-GAAGGCATGAGTGACTATAAATGAACTTTTTT
1 AAAATC-ATTTAAAGCGAGTAACAAAGCT-TTCGAA-GCATGAATGACTATAAATGGACTTTTCT
* * * ** * ** * * *
1269530 TATTAATTGATGACATCTATTTCATGTTTCCTAATGCAAACAATC--ATTCTTGATTGA-TTTAA
63 TGTCAATGGATG-GTTTTGCTTCATGTTTTCTAATG-AAAC-ATCAAATT-ATGATTTATTTTAA
** * *** * *
1269592 GTTGATAATGGAAAATATTTTGATTTAAAAATATTTATAAGATTAT
124 --CAAAAAACAAAAAAATTTTGATTTAAAATTATTTATAA-ATTAT
* * * *** * * * *
1269638 AAAACCATTAAAAGCGAATATTGAGGCTTTCGAAGGCATGAATAACTAGAAATGGAC-TTTATTG
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAA-GCATGAATGACTATAAATGGACTTTTCTTG
* * * * * * * **
1269702 TCAATGGATGGCTTTTACTTCATATTTTCCAATTTAAATATCTAATTATGATCTGCTTTAACCAA
65 TCAATGGATGG-TTTTGCTTCATGTTTTCTAA-TGAAACATCAAATTATGATTTATTTTAA-CAA
* * *
1269767 AAATA-AAAAAAATTATAATTTAAAATTATTTATTAATTAT
127 AAA-ACAAAAAAATTTTGATTTAAAATTATTTATAAATTAT
* *** * * * * * * *
1269807 AAAATTATTTAAAATAAGTAACAAGGCTTTTGACA-CAT-AGGTGACTATAAAAGAAATTTTTTT
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGA-AGCATGA-ATGACTATAAATGGACTTTTCTT
** * * * * * *
1269870 GTCAATGGATTATATTTGCTTCATGTTTTCCAATGCAAGCATCCAAA-TATAACTTGTTTTAACT
64 GTCAATGGATGGT-TTTGCTTCATGTTTTCTAATG-AAACAT-CAAATTATGATTTATTTTAACA
** * * * *
1269934 AAAAACAAAATGGATTTTGATTTAAGATCATTTCTAAGTTTAT
126 AAAAACAAAA-AAATTTTGATTTAAAATTATTTATAA-ATTAT
* ** * ** * ** * * *
1269977 AAAATTATTTAGGGC-ACGTAACAAGGCGTTTAAAAGTATGTGTGATTGTAAATGGATTTTTCTT
1 AAAATCATTTAAAGCGA-GTAACAAAGC-TTTCGAAGCATGAATGACTATAAATGGACTTTTCTT
* * * * * * * * * *
1270041 ATCAATAGAAGGCATTCGGTTCAAT-TTTCCTAATGCAAGCATTC-AATTATGATCTGTTTTAAC
64 GTCAATGGATGG-TTTTGCTTC-ATGTTTTCTAATG-AAACA-TCAAATTATGATTTATTTTAAC
* * *
1270104 AAAAAA-AGAAAAAGATTTCGATCTAAAATCATTTATAAGATTAT
125 AAAAAACA-AAAAA-ATTTTGATTTAAAATTATTTATAA-ATTAT
* * * * * * *
1270148 AAAATCACTTAAAACGAGTAACTAGGCTTTTGATGACAT-AAGTGACTATAAATGGTCTTTT-TT
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAAG-CATGAA-TGACTATAAATGGACTTTTCTT
*** * ** ** ** **
1270211 -TCCAAACAAATGGCATCCGTCCACAT-TTCCCT-ATGCAAACATCAAATT-TGATCGATTTTAA
64 GT-C-AATGGATGG-TTTTG-CTTCATGTTTTCTAATG-AAACATCAAATTATGATTTATTTTAA
* * * * *
1270272 CCAAAAACAAAAAAGAGTTTAATTTAAAATCATTTATAAGATTAC
124 CAAAAAACAAAAAA-ATTTTGATTTAAAATTATTTATAA-ATTAT
* * * *
1270317 AAAATCATTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGACTGACTAT-AATAGACTTTTTTTG
1 AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAA-GCATGAATGACTATAAATGGACTTTTCTTG
** * * * * * ** * * ** *
1270381 TTGATGAATGCCTTTCGCTTTATGTTTCCCGATACAAACATCTAATTATGATCCATTTTAAC-CA
65 TCAATGGATG-GTTTTGCTTCATGTTTTCTAAT-GAAACATCAAATTATGATTTATTTTAACAAA
*
1270445 AAACAAAAAAGATTTTGATCTAAAATTATTTA
128 AAACAAAAAA-ATTTTGATTTAAAATTATTTA
1270477 AAGCAAGTAA
Statistics
Matches: 1542, Mismatches: 363, Indels: 239
0.72 0.17 0.11
Matches are distributed among these distances:
160 1 0.00
161 6 0.00
162 11 0.01
163 68 0.04
164 32 0.02
165 11 0.01
167 7 0.00
168 81 0.05
169 478 0.31
170 311 0.20
171 484 0.31
172 44 0.03
173 6 0.00
174 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (166 bp):
AAAATCATTTAAAGCGAGTAACAAAGCTTTCGAAGCATGAATGACTATAAATGGACTTTTCTTGT
CAATGGATGGTTTTGCTTCATGTTTTCTAATGAAACATCAAATTATGATTTATTTTAACAAAAAA
CAAAAAAATTTTGATTTAAAATTATTTATAAATTAT
Found at i:1269449 original size:505 final size:494
Alignment explanation
Indices: 1268364--1270208 Score: 1367
Period size: 510 Copynumber: 3.6 Consensus size: 494
1268354 GATAGCTTTG
* * * * * * * *
1268364 CCTTCATGTTTTCTTATGAAAACATCCAATTATAATCTATTTTAACTAAAAAAAGAAAA-AAATT
1 CCTTCATGTTTTC-AATGCAAACATCCAAATATAAT-TGTTTTAAC-CAAAAACGAAAAGGATTT
* * * * *
1268428 TGATTTAAAATTATTTATAA-ATTATAAAATCATTTAAAGCAAGTAACAAAGCTTTCGAAGCATG
63 TGATTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAACAGA-CTTT-GAGGCATG
* * ** * *
1268492 AATGACTATAAATGGACTTTTTTTGTCAATGGATGGGTTTTGCTTCATGTTT-TTCAATGAAAGC
126 AGTGACTATAAATGGACTTTTTTTATCAATGGATGACTTTTGCTTCATGTTTCCT-AAT-AAAAC
* ** * ** * * * * *
1268556 ATAAAATTATGATTTTTTTTAAGAAAAAACAAAAAAGATTTTGACTTCAAATTATTTGT-ACATT
189 AT-CAATTATGATTGATTTTAACAAAAAATGAAAAA-ATTTTGATTTAAAAATATTTATAAGATT
1268620 ATAAAATCCT-TT-AAAGCGAGTAAAAGGCTTTCGAAGACATA-AGTGACTATAAATGGACTTTT
252 ATAAAA--CTATTAAAAGCGAGTAAAAGGCTTTCGAAGACA-AGAGTGACTATAAATGGACTTTT
* * * * * * * * *
1268682 CTTATCAATGTATGG-TTTCCGCTTCATGTTTGCTGATGTAAACATCTAATTGTGATTTGTTTTA
314 CTTGTCAATGGATGGCTTT-CACTTCATATTT-TTGCTATAAACATCTAATTATGATATG-TTTA
*
1268746 ACAAAAAATAAAAAATATTTTGACTTTAAATTATTTATGTATTATAAAACTATTTAAAGCGAGTA
376 AC-AAAAATAAAAAA-ATTTTGA-TTTAAATTA-TTAT-AATTATAAAACTATTTAAAGCGAGTA
* * * ** * *
1268811 AAAAAGTTTTCGAACATATG-AGTGACTATAAAT-GAATTTTTCTTGTCAATGGATGGTA-TT
436 ACAAAG-CTTCG-A-TTGCGAAATGACTATAAATGGAA-TTTTCTTGTCAATGGATTGTATTT
** * * * * **
1268871 CACTTCACATTTCTCAATGTAAACATCCAAATATGATCTGCTTTGACC-AAAACTGAAAAATATT
1 C-CTTCATGTTT-TCAATGCAAACATCCAAATATAAT-TGTTTTAACCAAAAAC-GAAAAGGATT
*
1268935 TTGATTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAACGAGACATTTGTTGGCA
62 TTGATTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAAC-AGAC-TTTG-AGGCA
* * *
1269000 TGAGTGTCTATAAATGGACTTTTCTTATCAATGGATAACTTTTGCTTCATGTTTCCTAATATAAA
124 TGAGTGACTATAAATGGACTTTTTTTATCAATGGATGACTTTTGCTTCATGTTTCCTAATA-AAA
* * **
1269065 CATCCAATTATGATTGATTTTAACCAAAAATGAAAAAATTTTCTATTTAAAACCATTTATAAGAT
188 CAT-CAATTATGATTGATTTTAACAAAAAATGAAAAAATTTT-GATTTAAAAATATTTATAAGAT
* * *
1269130 TATAAAACTATTAAAAGCGAGTAACAAAGCTTTCGAAGCCAAGAGTGACTATAAATAGACTTTTC
251 TATAAAACTATTAAAAGCGAGTAA-AAGGCTTTCGAAGACAAGAGTGACTATAAATGGACTTTTC
* * *
1269195 TTGTCAATGGATGGCTTTCACTTCAAATTTATTGCTACAAACATCCAATTATGATATGTGTTAAT
315 TTGTCAATGGATGGCTTTCACTTCATATTT-TTGCTATAAACATCTAATTATGATATGT-TTAA-
**
1269260 CAAAAATAAAATAAATTTTGATTTAAA-TA-TA-AATTATAAAAGAATTTAAAGCGAGTAACAAC
377 CAAAAATAAAA-AAATTTTGATTTAAATTATTATAATTATAAAACTATTTAAAGCGAGTAACAA-
1269322 AGCTTCGATTGCGAAATGACTATAAATGGAATTTTCTTGTCAATGGATTGTATTT
440 AGCTTCGATTGCGAAATGACTATAAATGGAATTTTCTTGTCAATGGATTGTATTT
* * * * *
1269377 CCTTCATGTTTTATAATGCAAACATCCATATACAATATGTTTTAACCAAAAACGAAAGGGATTTC
1 CCTTCATGTTTT-CAATGCAAACATCCAAATATAAT-TGTTTTAACCAAAAACGAAAAGGATTTT
* * * * *
1269442 AATTTAAAATCATTTATAAGTTTATAAAACTATTTAAAGTAAGTAACAAGGCTGATGAAGGCATG
64 GATTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAAC-AGACT-TTG-AGGCATG
* * * * * ** *
1269507 AGTGACTATAAATGAACTTTTTTTATTAATTGATGACATCTATTTCATGTTTCCTAATGCAAACA
126 AGTGACTATAAATGGACTTTTTTTATCAATGGATGACTTTTGCTTCATGTTTCCTAAT-AAAAC-
* *** * *
1269572 ATC-ATTCTTGATTGA-TTTAAGTTGATAATGGAAAATATTTTGATTTAAAAATATTTATAAGAT
189 ATCAATT-ATGATTGATTTTAA-CAAAAAAT-GAAAAAATTTTGATTTAAAAATATTTATAAGAT
* * ** * * * * * *
1269635 TATAAAACCATTAAAAGCGAATATTGAGGCTTTCGAAGGCATGAATAACTAGAAATGGAC-TTTA
251 TATAAAACTATTAAAAGCGAGTA-AAAGGCTTTCGAAGACAAGAGTGACTATAAATGGACTTTTC
* * * * *
1269699 TTGTCAATGGATGGCTTTTACTTCATA-TTTTCCAATTTAAATATCTAATTATGATCTGCTTTAA
315 TTGTCAATGGATGGCTTTCACTTCATATTTTTGC--TATAAACATCTAATTATGATATG-TTTAA
* * * ***
1269763 CCAAAAATAAAAAAAATTATAATTTAAAATTATTTATTAATTATAAAATTATTTAAAATAAGTAA
377 -CAAAAAT-AAAAAAATTTTGATTT-AAATTA-TTA-TAATTATAAAACTATTTAAAGCGAGTAA
* * * * *
1269828 CAAGGCTT---TTGAC-ACATAGGTGACTATAAAAGAAATTTTTTTGTCAATGGATTATATTT
437 CAAAGCTTCGATTG-CGA-A-A--TGACTATAAATGGAATTTTCTTGTCAATGGATTGTATTT
* * *
1269887 GCTTCATGTTTTCCAATGCAAGCATCCAAATATAACTTGTTTTAACTAAAAAC-AAAATGGATTT
1 CCTTCATGTTTT-CAATGCAAACATCCAAATATAA-TTGTTTTAACCAAAAACGAAAA-GGATTT
* * ** ** * * * * *
1269951 TGATTTAAGATCATTTCTAAGTTTATAAAATTATTTAGGGCACGTAACAAGGCGTTTAAAAGTAT
63 TGATTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAAC-AGAC-TTT-GAGGCAT
* * * * * * * * * *
1270016 GTGTGATTGTAAATGGA-TTTTTCTTATCAATAGAAGGCATTCGGTTCAAT-TTTCCTAATGCAA
125 GAGTGACTATAAATGGACTTTTT-TTATCAATGGATGACTTTTGCTTC-ATGTTTCCTAAT-AAA
* * * *
1270079 GCATTCAATTATGATCTG-TTTTAACAAAAAAAGAAAAAGATTTCGATCT-AAAATCATTTATAA
187 ACA-TCAATTATGAT-TGATTTTAACAAAAAATGAAAAA-ATTTTGATTTAAAAAT-ATTTATAA
* * * *
1270142 GATTATAAAA-TCACTTAAAA-CGAGTAACTAGGCTTTTGATGACATA-AGTGACTATAAATGGT
248 GATTATAAAACT-A-TTAAAAGCGAGTAA-AAGGCTTTCGAAGACA-AGAGTGACTATAAATGGA
1270204 CTTTT
309 CTTTT
1270209 TTTCCAAACA
Statistics
Matches: 1074, Mismatches: 199, Indels: 126
0.77 0.14 0.09
Matches are distributed among these distances:
502 3 0.00
503 2 0.00
504 79 0.07
505 269 0.25
506 63 0.06
507 10 0.01
508 60 0.06
509 60 0.06
510 372 0.35
511 53 0.05
512 97 0.09
513 6 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (494 bp):
CCTTCATGTTTTCAATGCAAACATCCAAATATAATTGTTTTAACCAAAAACGAAAAGGATTTTGA
TTTAAAATCATTTATAAGTTTATAAAACCATTTAAAGCAAGTAACAGACTTTGAGGCATGAGTGA
CTATAAATGGACTTTTTTTATCAATGGATGACTTTTGCTTCATGTTTCCTAATAAAACATCAATT
ATGATTGATTTTAACAAAAAATGAAAAAATTTTGATTTAAAAATATTTATAAGATTATAAAACTA
TTAAAAGCGAGTAAAAGGCTTTCGAAGACAAGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
TGGCTTTCACTTCATATTTTTGCTATAAACATCTAATTATGATATGTTTAACAAAAATAAAAAAA
TTTTGATTTAAATTATTATAATTATAAAACTATTTAAAGCGAGTAACAAAGCTTCGATTGCGAAA
TGACTATAAATGGAATTTTCTTGTCAATGGATTGTATTT
Done.