Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399954.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3182.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2500
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.23

Warning! 849 characters in sequence are not A, C, G, or T


Found at i:2471 original size:171 final size:170

Alignment explanation


    Indices: 1910--2500  Score: 502
    Period size: 171  Copynumber: 3.5  Consensus size: 170

       1900 AACTTTTCTT

                                 *       *     *                       *     
       1910 GTCAATGAATGACTTTTTCTTTACATTCCCAGAGATAGACATTCAATTATAATCTGTTTTAACCA
          1 GTCAATGAATGACTTTTTCTTCACATTCCTAGAGAAAGACATTCAATTATAATCTGTTTCAACCA

                 *          *                 *                      *     * 
       1975 AAAATATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAA-TCATTTAAAGAGAGTACT
         66 AAAATGT-AAAAAATTTAACTTAAAATCAATTATAAGATTATAAAACT-ATTTAAAGCGAGTAAT

                     *  *        *         *          *
       2039 AAAGCTTTTGAAGGAAT-GAGCGACTATAAAAAGACTTTTT-T
        129 AAAGC-TTTCAAAGAATAGAGTGACTATAAATAGACTTTTTCA

            *      *                           *   *           *   **      * 
       2080 TTCCAATAAATG-CTATTTTCTTCACGTATT-CTAAAG-TAGACATTCAATAATAGCCTGTTTGA
          1 GT-CAATGAATGACT-TTTTCTTCAC--ATTCCTAGAGAAAGACATTCAATTATAATCTGTTTCA

                                                         *      *            
       2142 ACCAAAAATGTAAAAAACTTTAACTTAAAATCAATTATAAGATTACAAAACTCTTTAAAGCGAGT
         62 ACCAAAAATGTAAAAAA-TTTAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGT

                   *   *              *  *                 
       2207 AATAAAGATTTTAAAGGAAT-GAGTGTCTCTAAATAGACTTTTTTCA
        126 AATAAAGCTTTCAAA-GAATAGAGTGACTATAAATAGAC-TTTTTCA

                *                  *   ** *    *      *           *         *
       2253 -TCAGTGAATGACTTTTTCTTCATATTTTTCGAGGTAA-ACAATCAATTATAATTTGTTTCAACT
          1 GTCAATGAATGACTTTTTCTTCACATTCCTAGA-GAAAGACATTCAATTATAATCTGTTTCAACC

                                        * *   *      *        *              
       2316 AAAAATGTAAAAACATTTAACTTAAAATTAGTTACAAGATTGTAAAACTAGTTAAAGCGAGTAAT
         65 AAAAATGTAAAAA-ATTTAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAAT

              *           *                 *          
       2381 AAGGCTTTCCAAAGCATAG-GTGACTATAAATGGACTTTTTCA
        129 AAAGCTTT-CAAAGAATAGAGTGACTATAAATAGACTTTTTCA

                       *         *     *                            *   ** * 
       2423 GTCAATGAATGGCTTTTTCTTTA-AGTGCCTAGAGAAAGACATTCAATTATAATCTATTTTTATC
          1 GTCAATGAATGACTTTTTCTTCACA-TTCCTAGAGAAAGACATTCAATTATAATCTGTTTCAACC

                  *       
       2487 AAAAATATAAAAAA
         65 AAAAATGTAAAAAA


Statistics
Matches: 334,  Mismatches: 68, Indels: 38
        0.76            0.15        0.09

Matches are distributed among these distances:
 169    3  0.01
 170   28  0.08
 171  281  0.84
 172   19  0.06
 173    3  0.01

ACGTcount: A:0.41, C:0.13, G:0.12, T:0.35


Consensus pattern (170 bp):   
GTCAATGAATGACTTTTTCTTCACATTCCTAGAGAAAGACATTCAATTATAATCTGTTTCAACCA
AAAATGTAAAAAATTTAACTTAAAATCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAA
AGCTTTCAAAGAATAGAGTGACTATAAATAGACTTTTTCA
Done.