Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399956.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3184.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 890

Length: 1484
ACGTcount: A:0.15, C:0.07, G:0.05, T:0.18

Warning! 819 characters in sequence are not A, C, G, or T


Found at i:322 original size:171 final size:171

Alignment explanation


    Indices: 1--323  Score: 398
    Period size: 171  Copynumber: 1.9  Consensus size: 171

                   **                         *           **      *   *      
          1 CATTTTTTGTTAAAACAGATTATAATTGAATGTCTACCTTGAGAAATTTGAAGACAAACGCATTC
          1 CATTTTTCATTAAAACAGATTATAATTGAATGTCCACCTTGAGAAACATGAAGAAAAAAGCATTC

                 *                        **********                        *
         66 AATGGTAAGAAAAGTCCATTTATAGTCTCCNNNNNNNNNNAAAGGCTTACTACTCACTTTAAATG
         66 AATGGAAAGAAAAGTCCATTTATAGTCTCCCAATCTTTCAAAAGGCTTACTACTCACTTTAAATA

                 *      **                           
        131 GCTTTTTAAGTTTGTAATTGATTTTAAGTTGAATTCTTTTA
        131 GCTTTATAAGTTCATAATTGATTTTAAGTTGAATTCTTTTA

                                                                             
        172 CATTTTTCATTAAAACAGATTATAATTGAATGTCCACCTTGAGAAACATGAAGAAAAAAGCATTC
          1 CATTTTTCATTAAAACAGATTATAATTGAATGTCCACCTTGAGAAACATGAAGAAAAAAGCATTC

                                                        *    *               
        237 AATGGAAAGAAAAGTCCATTTATAGTCTCCCAATCTTTCAAAAGTCTTATTACTCACTTTAAATA
         66 AATGGAAAGAAAAGTCCATTTATAGTCTCCCAATCTTTCAAAAGGCTTACTACTCACTTTAAATA

                                    
        302 G-TTTCATAA-TCTCATAATTGAT
        131 GCTTT-ATAAGT-TCATAATTGAT

        324 NNNNNNNNNN


Statistics
Matches: 126,  Mismatches: 24, Indels: 4
        0.82            0.16        0.03

Matches are distributed among these distances:
 170    4  0.03
 171  122  0.97

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.35


Consensus pattern (171 bp):   
CATTTTTCATTAAAACAGATTATAATTGAATGTCCACCTTGAGAAACATGAAGAAAAAAGCATTC
AATGGAAAGAAAAGTCCATTTATAGTCTCCCAATCTTTCAAAAGGCTTACTACTCACTTTAAATA
GCTTTATAAGTTCATAATTGATTTTAAGTTGAATTCTTTTA
Done.