Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399963.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3190.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.26

Warning! 302 characters in sequence are not A, C, G, or T


Found at i:299 original size:172 final size:169

Alignment explanation


    Indices: 1--515  Score: 620
    Period size: 172  Copynumber: 3.0  Consensus size: 169

                            *     *                * *            *       *  
          1 TTTTCTTCATGTTTCTTGAGGTTGACATTCAATTATAATATGTTTTAACCAAAACTATACAAAAA
          1 TTTTCTTCATGTTTCTCGAGGTAGACATTCAATTATAATCTATTTTAACCAAAAATATACAAGAA

              *                                                              
         66 TTTAAACTTAAACTCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAGGGCTTTTAATGG
         66 TTCAAACTTAAA-TCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAGGGCTTTTAA-GG

                             *            *         * 
        131 TATGGGTGACTATAAATAGACTTTTCTTGCTAATGAATGTTT
        129 TATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATG-CT

                   *       * *                *  *          *                
        173 TTTTCTTAATGTTTCACAAGGTAGACATTCAATTCTAGTCTATTTTAATCAAAAATATACTAAGA
          1 TTTTCTTCATGTTTCTCGAGGTAGACATTCAATTATAATCTATTTTAACCAAAAATATAC-AAGA

                   *                      *               **       *         
        238 ATTCAAATTTAAATCAATTTTGAGATTATAGAACCATTTAAAGTGACCAAT-GAGACTTTTAAAG
         65 ATTCAAACTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAG-GGCTTTT-AAG

             *   **                   *               
        302 GAATGAATGACTATAAATGGACTTTTTTTGCCAATGAATGCT
        128 GTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCT

                    *                                     *           * *   *
        344 TTTTCTTCGTGTTTCTCGA-GTAGACATTCAATTATAATCTATTTTGACCAAAAATGAAAAAAGC
          1 TTTTCTTCATGTTTCTCGAGGTAGACATTCAATTATAATCTATTTTAACCAAAAAT-ATACAAGA

               **     *                 *                                    
        408 ATTTGAACGTAAAATCAATTTTGAGATTCTAAAACCATTTAAAGTGAGTAATAGGGCTTTTGAAG
         65 ATTCAAAC-TTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAGGGCTTTT-AAG

                *                                     
        473 GTATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCT
        128 GTATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCT

             
        515 T
          1 T

        516 NNNNNNNNNN


Statistics
Matches: 286,  Mismatches: 51, Indels: 13
        0.82            0.15        0.04

Matches are distributed among these distances:
 170   40  0.14
 171  104  0.36
 172  126  0.44
 173   16  0.06

ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38


Consensus pattern (169 bp):   
TTTTCTTCATGTTTCTCGAGGTAGACATTCAATTATAATCTATTTTAACCAAAAATATACAAGAA
TTCAAACTTAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAGGGCTTTTAAGGTA
TGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCT

Done.