Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399967.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3194.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2521
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.20

Warning! 949 characters in sequence are not A, C, G, or T


Found at i:133 original size:10 final size:10

Alignment explanation


    Indices: 118--146  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        108 NNNATTGTTT

                      
        118 CATTTTGAAA
          1 CATTTTGAAA

                      
        128 CATTTTGAAA
          1 CATTTTGAAA

                     
        138 CATTTTGAA
          1 CATTTTGAA

        147 CTCCTACAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41


Consensus pattern (10 bp):   
CATTTTGAAA
Done.