Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399986.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3212.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.23

Warning! 614 characters in sequence are not A, C, G, or T


Found at i:993 original size:171 final size:171

Alignment explanation


    Indices: 699--1165  Score: 465
    Period size: 171  Copynumber: 2.7  Consensus size: 171

        689 NNNNNNNNTG

                                 *     *                        *      *     
        699 AATTTTTTTACATTTTTGGTTCAAACAGATTATAATTGAATGTCTACCTCAAAAAAGGTGAAGAA
          1 AATTTTTTTACATTTTTGGTTAAAACATATTATAATTGAATGTCTACCTCAAGAAAGGTAAAGAA

                          **                           * *     *        *    
        764 AAAGGTATTCATTGGTAAGAAAAGTCTATTTATAGTCACCCATTCTTTCAATAGCCTTATTACTC
         66 AAAGGTATTCATTGACAAGAAAAGTCTATTTATAGTCACCCATACCTTCAAAAGCCTTATAACTC

                           **********               *
        829 TCTTTAAATAGTTTTNNNNNNNNNNAATTGATTTTAAGTTC
        131 TCTTTAAATAGTTTTATAATGTCATAATTGATTTTAAGTTA

                      *                                                      
        870 AATTTTTTTATATTTTTGGCTT-AAACATATTATAATTGAATGTCTACCTCAAGAAAGGTAAAGA
          1 AATTTTTTTACATTTTTGG-TTAAAACATATTATAATTGAATGTCTACCTCAAGAAAGGTAAAGA

                                        **********                           
        934 AAAAGGTATTCATTGACAAGAAAAGTCTNNNNNNNNNNACCCATACCTTCAAAAGCCTTATAACT
         65 AAAAGGTATTCATTGACAAGAAAAGTCTATTTATAGTCACCCATACCTTCAAAAGCCTTATAACT

                                           *          
        999 CTCTTTAAATAGTTTTATAATGTCATAATTGGTTTTAAGTTA
        130 CTCTTTAAATAGTTTTATAATGTCATAATTGATTTTAAGTTA

                 *           *           *                           **      
       1041 AATTTGTTTACATTTTTTGTTAAAACATACTATAATT-ATATGTCTACCTCAAGAAAAATAAAGA
          1 AATTTTTTTACATTTTTGGTTAAAACATATTATAATTGA-ATGTCTACCTCAAGAAAGGTAAAGA

                  *       *         *   *  *        *     *                
       1105 AAAAGGCATTCA-TCAGCAAGAAATGTCCATGTATAGTCATCCAT-TCTATCAAAAGCCTTAT
         65 AAAAGGTATTCATTGA-CAAGAAAAGTCTATTTATAGTCACCCATACCT-TCAAAAGCCTTAT

       1166 TACTTTCAAC


Statistics
Matches: 237,  Mismatches: 54, Indels: 10
        0.79            0.18        0.03

Matches are distributed among these distances:
 170    7  0.03
 171  228  0.96
 172    2  0.01

ACGTcount: A:0.35, C:0.13, G:0.11, T:0.36


Consensus pattern (171 bp):   
AATTTTTTTACATTTTTGGTTAAAACATATTATAATTGAATGTCTACCTCAAGAAAGGTAAAGAA
AAAGGTATTCATTGACAAGAAAAGTCTATTTATAGTCACCCATACCTTCAAAAGCCTTATAACTC
TCTTTAAATAGTTTTATAATGTCATAATTGATTTTAAGTTA
Done.