Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399991.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3217.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2409
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.26

Warning! 490 characters in sequence are not A, C, G, or T


Found at i:2051 original size:169 final size:170

Alignment explanation


    Indices: 1712--2065  Score: 405
    Period size: 169  Copynumber: 2.1  Consensus size: 170

       1702 NNNNNNNNNN

                                              *                 *    *       
       1712 AGCAAGTAATAAGGCTTTTGAAGGCATAGGTGACTACAAATAGACTTTTCTTGCCAATGAATTGC
          1 AGCAAGTAATAAGGCTTTTGAAGGCATAGGTGACCACAAATAGACTTTTCTTCCCAACGAATTGC

               *                   *           *    * *    * **   *  *       
       1777 TTTTTCTTCATGTTTCTCGAGGCCAACACTCAATTCTAATTTGTTTTGATGAAAGTGTAAAAAAA
         66 TTTCTCTTCATGTTTCTCGAGGCAAACACTCAATTATAATCTATTTTAACCAAAATGCAAAAAAA

                                  *                 
       1842 TTCAACTTAAAATCAATAAAAAGATTATAAAACCATTTAA
        131 TTCAACTTAAAATCAATAAAAACATTATAAAACCATTTAA

                                        *        *                           
       1882 AGCAAGTAATAAGGC-TTTGAAAGG-ATGGGTGACCATAAAT-GTAC-TTTCTTCCCAACGAA-T
          1 AGCAAGTAATAAGGCTTTTG-AAGGCATAGGTGACCACAAATAG-ACTTTTCTTCCCAACGAATT

                                 *                                           
       1942 -CATATTCTCTTCATGTTTCTTGAGGCAAACACTCAATTATAATCTATTTTAACCAAATATGCAA
         64 GC-T-TTCTCTTCATGTTTCTCGAGGCAAACACTCAATTATAATCTATTTTAACCAAA-ATGCAA

                         *        * **     *      *      
       2006 AAAAATTCAACTTCAAATCAATTATGACATTGTAAAACTATTTAA
        126 AAAAATTCAACTTAAAATCAATAAAAACATTATAAAACCATTTAA

               *           
       2051 AGCGAGTAATAAGGC
          1 AGCAAGTAATAAGGC

       2066 NNNNNNNNNN


Statistics
Matches: 155,  Mismatches: 24, Indels: 11
        0.82            0.13        0.06

Matches are distributed among these distances:
 166    1  0.01
 167    2  0.01
 168   58  0.37
 169   75  0.48
 170   19  0.12

ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32


Consensus pattern (170 bp):   
AGCAAGTAATAAGGCTTTTGAAGGCATAGGTGACCACAAATAGACTTTTCTTCCCAACGAATTGC
TTTCTCTTCATGTTTCTCGAGGCAAACACTCAATTATAATCTATTTTAACCAAAATGCAAAAAAA
TTCAACTTAAAATCAATAAAAACATTATAAAACCATTTAA
Done.