Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397529.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2911.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9963
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.35
Warning! 556 characters in sequence are not A, C, G, or T
Found at i:881 original size:172 final size:161
Alignment explanation
Indices: 641--2172 Score: 405
Period size: 171 Copynumber: 9.0 Consensus size: 161
631 TTTAAATTGT
*
641 TTTATAATCTCATAATTGATTTAAGTTAATTTTTTTTTACATTTTTGGTTAAAACAGAGAAGAAT
1 TTTATAATCTCAAAATTGATTTAAGTTAATTTTTTTTTACATTTTTGGTTAAAACAGAGAAGAAT
* * * *
706 TGAATGTTTACCTCGAGAAATATAAAGAAAAATAG-ATTCATTGGCAAGCAAAGTCCATTTATAG
66 TGAATGTTTACCTCGAGAAACATAAAGAAAAA-AGCATTCACTAGCAAGAAAAGTCCATTTATAG
770 TCACTCATTCCTTTCAAAAGCCTTATTACTCAC
130 TCACTCATT-CTTTCAAAAGCCTTATTACTCAC
* * *
803 TTTANNNNNNNNNNTAATGTCAAAATTGATTTTAAGTTCATTTTTTTTTACTTTTTTGGTT-AAA
1 TTTA----------TAATCTCAAAATTGA-TTTAAGTTAATTTTTTTTTACATTTTTGGTTAAAA
* ** * * * * *
867 TAGATTATAATTGAATGTTTACCTTGAGAAACATGAAGAAAAAGGCATTCACTAGCATGAAAAGT
55 CAGAGAAGAATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAGCAAGAAAAGT
* * *
932 CCTTTTATAGTCACTCATTCTTTCAAAATCTTTATTACTCAC
120 CCATTTATAGTCACTCATTCTTTCAAAAGCCTTATTACTCAC
* ** * * *
974 TTTAAATTGTTTTATAATCTCATAATTGATTTTGCGTTGAA--TTATTTTACATTTCTAGTTAAA
1 ----------TTTATAATCTCAAAATTGA-TTTAAGTT-AATTTTTTTTTACATTTTTGGTTAAA
* ** * * * * ** * * * * *
1037 AAAGACTATAATTGAATGTCTAACTAGAGAAATGTGAAGAAAAAGGTATTCATTAGCAAAAAAAG
54 ACAGAGAAGAATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAGCAAGAAAAG
* * * * *
1102 TCTATTTATTGTCACCCATTCTTTCAAAAACCTTATTAGTCAC
119 TCCATTTATAGTCACTCATTCTTTCAAAAGCCTTATTACTCAC
* * * ** * *
1145 TTTA-AATGGTTTTATAATCTNNNNNNNNNNTTTAAGTTAA-ATTTTTTTATATTTTTGGTTAAA
1 TTTATAA---TCTCAAAAT-T--------GATTTAAGTTAATTTTTTTTTACATTTTTGGTTAAA
* ** * * * * * * * * * * *
1208 GCAGACTATAATTGAAGGTCTAACTTGTGAGACGTGAAGAAAAAAGAATTCA-TTGCCAAGAAAA
54 ACAGAGAAGAATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAG-CAAGAAAA
* * * *
1272 GTCCATTTATAGTGACCCATT-TCTTCAAAAGCCTTAGTACTCGCCTTAAATGGT
118 GTCCATTTATAGTCACTCATTCT-TTCAAAAGCCTTATTACT---C----A---C
* * * ** *
1326 TTTATAAT-TCAAAATTGA--T-GGTTCAATTTTTTTTTATATTATTT-GTTAAAACATATCATA
1 TTTATAATCTCAAAATTGATTTAAGTT-AATTTTTTTTTACATT-TTTGGTTAAAACAGAGAAGA
* * * * * * * * ** *
1386 ATTGAATGTCTACCTCAAGCAACATGAAGAAAAAGGTATTCATTGGCAAGAAAAGTTTATTTCTA
64 ATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAGCAAGAAAAGTCCATTTATA
* * * * *
1451 ATTACCCATTCCTTCAAAAGCCTTATTACTCCC
129 GTCACTCATTCTTTCAAAAGCCTTATTACTCAC
* * * * ** *
1484 TTTA-AATNNNNNNNNNNTCTCATAATTAATTTTAAGTTGA-GTTTTTTTACATTTTTCATTGAA
1 TTTATAA-----------TCTCAAAATTGA-TTTAAGTTAATTTTTTTTTACATTTTTGGTTAAA
* ** * *** * *** ** *
1547 ATAGACTATAATTGAATACCTGCCTCGAGAAACATGTGGAAAAAAAAATTCATTAAG-AAGAAAA
54 ACAGAGAAGAATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACT-AGCAAGAAAA
* * * *
1611 GTCTATTTATAGTCAC-CTATTCCTTCAAAAGCCTAATTACTCTC
118 GTCCATTTATAGTCACTC-ATTCTTTCAAAAGCCTTATTACTCAC
* * * * *
1655 TTTA-AATGGTNNNNNNNNNNCATAATTGATTTTAAGTCAA-TTTTTTTTATATTTTTGGTTACA
1 TTTATAAT-CT----------CAAAATTGA-TTTAAGTTAATTTTTTTTTACATTTTTGGTTAAA
** * * * * * ** * *
1718 ACAGACTATAATTGAATGTCTACATCGAGAAACGTGAAGAAAAATTCATTCA-TTGTCAAAAAAA
54 ACAGAGAAGAATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAG-CAAGAAAA
* * *
1782 GTCTATATATAGTCACTCATTCTTTCAAAAGCCTTATTACTCGCTTAAAATTAT
118 GTCCATTTATAGTCACTCATTCTTTCAAAAGCCTTATTACT--C--------AC
* * * ** *
1836 TTTATAATCTCAAAATTGATTTCAAGGTTAATTTTTTTTTACTTTTTTAGTTAAAACATATTATA
1 TTTATAATCTCAAAATTGATTT-AA-GTTAATTTTTTTTTACATTTTTGGTTAAAACAGAGAAGA
* * * * * * * **
1901 ATTGAATGTTTAGCTTGAAAAACATGAAGAAAAAGGCATTCACTA-TAAAAAAAGTTAATTTATA
64 ATTGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAGCAAGAAAAGTCCATTTATA
* * * *
1965 GTTACCCATTCTTTCAAAAGCGTTATTAGTCGATTTAAATGC
129 GTCACTCATTCTTTCAAAAGCCTTATTA--C----T-CA--C
* ** * * * * * *
2007 TTTTATAATCTCACAATTGATTTTAAGTCGA-TTATTTTTATATTTTTTGTTAAAAGAGACAACA
1 -TTTATAATCTCAAAATTGA-TTTAAGTTAATTTTTTTTTACATTTTTGGTTAAAACAGAGAAGA
* * * * * * * *
2071 ATTGAATGTCTACCTC-A-AAACACGTGAAGAAAAAGGCATTTATTGGCAACAAAACTCCATTTA
64 ATTGAATGTTTACCTCGAGAAACA--TAAAGAAAAAAGCATTCACTAGCAAGAAAAGTCCATTTA
*
2134 TAGTCAC-CTATTCCTTCAAAAGCCTTATTACTCAC
127 TAGTCACTC-ATTCTTTCAAAAGCCTTATTACTCAC
2169 TTTA
1 TTTA
2173 AANNNNNNNN
Statistics
Matches: 1037, Mismatches: 216, Indels: 235
0.70 0.15 0.16
Matches are distributed among these distances:
157 2 0.00
158 4 0.00
160 3 0.00
161 9 0.01
162 5 0.00
163 7 0.01
164 2 0.00
165 2 0.00
166 3 0.00
167 3 0.00
168 103 0.10
169 17 0.02
170 84 0.08
171 512 0.49
172 154 0.15
173 97 0.09
174 3 0.00
177 1 0.00
178 7 0.01
179 1 0.00
181 13 0.01
182 5 0.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38
Consensus pattern (161 bp):
TTTATAATCTCAAAATTGATTTAAGTTAATTTTTTTTTACATTTTTGGTTAAAACAGAGAAGAAT
TGAATGTTTACCTCGAGAAACATAAAGAAAAAAGCATTCACTAGCAAGAAAAGTCCATTTATAGT
CACTCATTCTTTCAAAAGCCTTATTACTCAC
Found at i:1003 original size:343 final size:343
Alignment explanation
Indices: 6--2729 Score: 1426
Period size: 342 Copynumber: 8.0 Consensus size: 343
1 TTTCA
* * * * *
6 TTAAAATAGACTATAATTGAATGTCTACCTCAAGAAACGTGAAG-AAAAGAGTATTCATTGGTAA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAG-GTATTCATTGGCAA
* * * ** * **********
70 GAAAAGTCCATTTATAGTCTCTTATTCC-TTGAAAAGCCTTATTANNNNNNNNNNAT-AGTTTTA
65 AAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGA-TTTTA
* * * * * *
133 TAATCTCATAATTAATTTTAAGTTGA-ATTATTTTACATTTTTT-ATTAAAATAGACTATAATTG
129 TAATCTCAAAATTGATTTTAAGTT-ATTTTTTTTTAC-TTTTTTGGTTAAAACAGACTATAATTG
* * * ** * **********
196 AATGTATACCTTGAGAAACATGAA-AAAAAAGCATTCATTGATAAAAAAAAGTCNNNNNNNNNNC
192 AATGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACT-AGCAAGAAAAGTCCATTTATAGTC
* * * * *
260 ACCCATTCCTTCAAAAACCTT-TTCACTCGCTTTAAATTATTTTATAATCTGATAATTGATTTTA
256 ACCCATTCTTTCAAAAGCCTTATT-ACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTA
* *
324 AGTTTAA-ATTTTTTATATTTTTTG
320 AG-TTAATTTTTTTTATATTTTTGG
* ** * * * **
348 TTAAAACATATTATAATTGAATGCCTACCTCTAGAAACAT-ATAGCAAAAGCCATTCATT-GCTA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGA-AGAAAAAGGTATTCATTGGC-A
* * * * * * ***********
411 AGAAAACTCCATTTATAGTCTCTCATT-CTTTTAAAAGCCTTATTACTNNNNNNNNNNAATTTTA
64 AAAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTA
* * * * ** ** *
475 TAATCTCATAATTGGTTTTAAGTTGA--ATTTCTTAGATTTTTCCTTAAAACCA-ACCATAATTG
129 TAATCTCAAAATTGATTTTAAGTT-ATTTTTTTTTACTTTTTTGGTTAAAA-CAGACTATAATTG
* * * * * * * * * * * *
537 AATGCCTGCCTCG-GAAACGTGTAGAAAAACA-CATTTATTCGAAAAAAAAGGTCTATTTATAGT
192 AATGTCTACCTTGAGAAACATGAAGAAAAA-AGAATTCACTAGCAAGAAAA-GTCCATTTATAGT
* *** * * **
600 CTCCCATT-TCTTCAAAATTTTTTTTATTTTCTTTAAATTGTTTTATAATCTCATAATTGA-TTT
255 CACCCATTCT-TTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTT
*
663 AAGTTAATTTTTTTTTACATTTTTGG
319 AAGTTAA-TTTTTTTTATATTTTTGG
* * * * * *
689 TTAAAACAGAGAAGAATTGAATGTTTACCTCGAGAAATATAAAGAAAAATAG-ATTCATTGGCAA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAA-GGTATTCATTGGCAA
** * * **********
753 GCAAAGTCCATTTATAGTCACTCATTCCTTTCAAAAGCCTTATTACTCACTTTANNNNNNNNNNT
65 AAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTAT
* * *
818 AATGTCAAAATTGATTTTAAGTTCATTTTTTTTTACTTTTTTGGTT-AAATAGATTATAATTGAA
130 AATCTCAAAATTGATTTTAAGTT-ATTTTTTTTTACTTTTTTGGTTAAAACAGACTATAATTGAA
* * * * * *
882 TGTTTACCTTGAGAAACATGAAGAAAAAGGCATTCACTAGCATGAAAAGTCCTTTTATAGTCACT
194 TGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAGCAAGAAAAGTCCATTTATAGTCACC
* * **
947 CATTCTTTCAAAATCTTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTGCGTT
259 CATTCTTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTT
* * * *
1012 GAA-TTATTTTACATTTCTAG
324 -AATTTTTTTTATATTTTTGG
* * * * ** *
1032 TTAAAAAAGACTATAATTGAATGTCTAACTAGAGAAATGTGAAGAAAAAGGTATTCATTAGCAAA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGGTATTCATTGGCAAA
* * * *
1097 AAAAGTCTATTTATTGTCACCCATT-CTTTCAAAAACCTTATTAGTCACTTTAAATGGTTTTATA
66 AAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTATA
********** ** * *
1161 ATCTNNNNNNNNNNTTTAAGTTAAATTTTTTTA-TATTTTTGGTTAAAGCAGACTATAATTGAAG
131 ATCTCAAAATTGATTTTAAGTTATTTTTTTTTACT-TTTTTGGTTAAAACAGACTATAATTGAAT
* * * * * *
1225 GTCTAACTTGTGAGACGTGAAGAAAAAAGAATTCA-TTGCCAAGAAAAGTCCATTTATAGTGACC
195 GTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAG-CAAGAAAAGTCCATTTATAGTCACC
* * * * * *
1289 CATT-TCTTCAAAAGCCTTAGTACTCGCCTTAAATGGTTTTATAAT-TCAAAATTGA---T-GGT
259 CATTCT-TTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGT
1348 TCAATTTTTTTTTATATTATTT-G
323 T-AA-TTTTTTTTATATT-TTTGG
* * *
1371 TTAAAACATATC-ATAATTGAATGTCTACCTCAAGCAACATGAAGAAAAAGGTATTCATTGGCAA
1 TTAAAACAGA-CAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGGTATTCATTGGCAA
* * * * * * ********
1435 GAAAAGTTTATTTCTAATTACCCATTCC-TTCAAAAGCCTTATTACTCCCTTTAAATNNNNNNNN
65 AAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTAT
** * * * * ** * *
1499 NNTCTCATAATTAATTTTAAGTTGA-GTTTTTTTACATTTTTCATTGAAATAGACTATAATTGAA
130 AATCTCAAAATTGATTTTAAGTT-ATTTTTTTTTACTTTTTTGGTTAAAACAGACTATAATTGAA
** * * ** * * *
1563 TACCTGCCTCGAGAAACATGTGGAAAAAAAAATTCATTAAG-AAGAAAAGTCTATTTATAGTCAC
194 TGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACT-AGCAAGAAAAGTCCATTTATAGTCAC
* * * * * **********
1627 CTATTCCTTCAAAAGCCTAATTACTCTCTTTAAATGGTNNNNNNNNNNCATAATTGATTTTAAGT
258 CCATTCTTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGT
*
1692 CAATTTTTTTTATATTTTTGG
323 TAATTTTTTTTATATTTTTGG
* * * * * *
1713 TTACAACAGACTATAATTGAATGTCTACATCGAGAAACGTGAAGAAAAA-TTCATTCATTGTCAA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGGT-ATTCATTGGCAA
* * * * *
1777 AAAAAGTCTATATATAGTCACTCATT-CTTTCAAAAGCCTTATTACTCGCTTAAAATTATTTTAT
65 AAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTAT
* * * *
1841 AATCTCAAAATTGATTTCAAGGTTAATTTTTTTTTACTTTTTTAGTTAAAACATATTATAATTGA
130 AATCTCAAAATTGATTTTAA-GTT-ATTTTTTTTTACTTTTTTGGTTAAAACAGACTATAATTGA
* * * * * * * ** *
1906 ATGTTTAGCTTGAAAAACATGAAGAAAAAGGCATTCACTA-TAAAAAAAGTTAATTTATAGTTAC
193 ATGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAGCAAGAAAAGTCCATTTATAGTCAC
* * *
1970 CCATTCTTTCAAAAGCGTTATTAGTCGA-TTTAAA-TGCTTTTATAATCTCACAATTGATTTTAA
258 CCATTCTTTCAAAAGCCTTATTACTC-ACTTTAAATTG-TTTTATAATCTCATAATTGATTTTAA
** * *
2033 GTCGATTATTTTTATATTTTTTG
321 GTTAATTTTTTTTATATTTTTGG
* * * *
2056 TTAAAAGAGACAACAATTGAATGTCTACCTC-A-AAACACGTGAAGAAAAAGGCATTTATTGGCA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACA--TGAAGAAAAAGGTATTCATTGGCA
* * * * ********
2119 ACAAAACTCCATTTATAGTCACCTATTCC-TTCAAAAGCCTTATTACTCACTTTAAANNNNNNNN
64 AAAAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTA
********** * ** *
2183 NNNNNNNNNNATTGATTTTAAGTTGA-ATTTTTTTA-TATTTTTCATTAAAACAGTCTATAATTG
129 TAATCTCAAAATTGATTTTAAGTT-ATTTTTTTTTACT-TTTTTGGTTAAAACAGACTATAATTG
* * * * ********** *
2246 ACTATCTACCTCGAGAAACGTGAAGAAAAAANNNNNNNNNNGCAAGAAAAGTCCATTTATAGTCT
192 AATGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAGCAAGAAAAGTCCATTTATAGTCA
** * * ** * * * *
2311 CTTATTTTTTTCAACATACTTATTACTCGCTTTGAATAT-TTTTATAATCTCATAGTTGGTTTTA
257 CCCA-TTCTTTCAAAAGCCTTATTACTCACTTTAAAT-TGTTTTATAATCTCATAATTGATTTTA
* * * *
2375 AGTTGACTTGTTTTATATTTTTAG
320 AGTTAATTTTTTTTATATTTTTGG
* * * * * *
2399 TT-AAATAGACTATAATTGAATATCTACCTCGAGAAACATAAAGAAAAAGGCATTCATTGACAAA
1 TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGGTATTCATTGGCAAA
********** * *
2463 AAAAGTCTATNNNNNNNNNNCCATTCC-TTCAAAGGCCTTATTACTCACTTTAAATGATTTTATT
66 AAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTATA
* ** * * * * *
2527 ATCACAAAATTGATTTTAAGTTCAAATTTTTTTAAAATTTTTT-ATCAAAATAGATTATAATTGA
131 ATCTCAAAATTGATTTTAAGTT---ATTTTTTTTTACTTTTTTGGTTAAAACAGACTATAATTGA
* ** * * * * *
2591 ATGTCAACCTTGAGAAATGTGAAGAAAAAGGCATTGATTGGCAAGAAAAGTCCATTTATAGTCAC
193 ATGTCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAGCAAGAAAAGTCCATTTATAGTCAC
** ** * * ** * *
2656 TTATTCCCTCAAAATCCTTATAACTTGC-TTAAATGGTTTTATAATCTCATTATTGATTTTAAGT
258 CCATTCTTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGT
2720 TGAATTTTTT
323 T-AATTTTTT
2730 NNNNNNNNNN
Statistics
Matches: 1792, Mismatches: 517, Indels: 145
0.73 0.21 0.06
Matches are distributed among these distances:
337 5 0.00
338 1 0.00
339 231 0.13
340 43 0.02
341 270 0.15
342 595 0.33
343 453 0.25
344 179 0.10
345 14 0.01
346 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.38
Consensus pattern (343 bp):
TTAAAACAGACAATAATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGGTATTCATTGGCAAA
AAAAGTCTATTTATAGTCACCCATTCCTTTCAAAAGCCTTATTACTCACTTTAAATGATTTTATA
ATCTCAAAATTGATTTTAAGTTATTTTTTTTTACTTTTTTGGTTAAAACAGACTATAATTGAATG
TCTACCTTGAGAAACATGAAGAAAAAAGAATTCACTAGCAAGAAAAGTCCATTTATAGTCACCCA
TTCTTTCAAAAGCCTTATTACTCACTTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTAA
TTTTTTTTATATTTTTGG
Found at i:4832 original size:171 final size:171
Alignment explanation
Indices: 4096--9963 Score: 2941
Period size: 171 Copynumber: 34.3 Consensus size: 171
4086 NNNNNNNNNN
* * *
4096 AAAAATTCAACTTAAAATCAATAATGAGATCATAAAACCATTT-AAGCGAGTTATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * *
4160 AAGGAAT-ATGTGACTATAAATGGACTTTTCTTGCCAATCAATGCCTTTTTCTTCACGTTTCTCA
66 AAGGAATGA-GTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * * ** *
4224 AGGTTGACATTCAATTATAATCTATTTTGATAAAAAATGTTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAAT-ATAA
* * * ** * ****
4267 AACAAATTGAACTTAAAATCAATTTTGAGATAATAAAATAATTTAAAGTGAGTAATAAGGCNNNN
1 AA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
****** * * * * * * **
4332 NNNNNNATGGGTGACTATAAATGGACTTTTTTTACCAATCAATGCCTTTTTCTTTATGTTTCTTG
65 GAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * *
4397 AGGTACACATTCAATTTTAGTTTG-TTTAACTAAAAATATAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * * * *
4438 AACAAGTCAACTTAAAACCAACTATGAGATTATGAAACCATTTAAAGCGAGTAATAAGTCTGTAG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
** * * * * * *
4503 AAAAAATAAGAGACTATAAATGGACTTTTCTTGACAATGAATG--TTTTT-TTCACGTTTCTCGA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* * * * *
4565 GTTAGACAGTCAATTATAGCCTGTTTTAACGAAAAATGTAA
131 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********************** *
4606 AAAAATTCAACTTAAAATCAATNNNNNNNNNNNNNNNNNNNNNNAAGTGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * **
4671 AAGGAATGAGTGACTATAAATAGAGTTTTCTTGCCAACGAATGCCTTTTTCTTCATGTTTTTTGA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* * *
4736 GGTAGACATTCAATTATTGTCTCTTTTAACAAAAAATATAA
131 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * *
4777 GAATAA-TCGACTTAAAATCAATTGTGAGATTATAAAACCATTTAAACCAAGTAATAAAGCTTTT
1 -AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * *** *
4841 GAAAGAATGGGTAACTATCAATTGAATTTT-TTTATAGTGAATGCCTTTTTCTTCATGTTTCTCA
65 GAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * *
4905 AGGTAAACATTCAATTATAATATG-TTTAACCAGAGAAA-AGTAAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCA-A-AAATA-T-AA
* * *
4949 ATATAAATTAAACCTTAAAATCAATTTTGAG-TTATAAAACAATTTAAAGCGAGTAATAAGGCTT
1 A-A-AAATTCAA-CTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTT
* * * * * * *
5013 TTGAAAGAATGGGTGACTATATATAAACGTTT-TTGACAATGAATGCATTTTTCTTCATGTTTCT
63 TTGAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT
* * * *
5077 CGATGTAGACATTCAATTATAGTTTGTTGTAACCAAAAATATAA
128 CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
** * * * ***
5121 AAAAATTTGACTTAAAATTAATTATGAGTTTATAAAACTATTTAAAGCGAGTAATAAGGCTTNNN
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
******* * * * ** * *
5186 NNNNNNNGGGTGACTATAAATGGACTTTTCTT-CTTAATGAATTTCTTTTTCTACATGTTTCTCG
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGC-CAATGAATGCCTTTTTCTTCATGTTTCTCA
* ** * * **
5250 AGGCAGGTATTCAATTATAGTCTATTTCAATGAAAAATATAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
*********** * * *
5292 AAAAATTCAACTTAAAATTNNNNNNNNNNTTATAAAATCATTTAAAGGGAGTAATAAGGCTTATG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ********** **
5357 AAGGAATGGGTAACTAGAAATAAACTTTTCTTGCCAATGAATGCCTTTNNNNNNNNNNTTCTTGA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* * * * *
5422 GGTAGACATTCAATTAT-GATATGCTTTAGCCAACAATGTAAAA
131 GGTAGACATTCAATTATAG-TCTGTTTTAACCAA-AA-ATATAA
* * * * *
5465 AAAAATTGAACCTAAAATCAATTTTGA-ATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTNN
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-T
******** * * * **
5529 NNNNNNNNG-GTGACTATAAATAGACTTTTCTTGCCAATGAATTCTTTTTTCTTCACGGCTCTCA
65 GAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * *
5593 AGTTAGACCTTCAATTATAGTATGCTTTAACCAAAAATATAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * * *
5635 TAAAATTTAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAATCTACTAATAAGGTTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** *
5700 AAAGGAATGAGTGACTATAAATAGACTTTTTTTGCTAATGAATACTTTTTTCTTCACATTTCTCT
66 -AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * *
5765 AGTTAGACATTCAATTACAGTCTGTTTTAACCAGAAATGTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * *
5807 AATAATTCAACTTAAAATCAATTATGAGATTATAAAACAATCTAAAGC-AGGTAATAAGGATTTT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA-GTAATAAGGCTTTT
* * * * * * *
5871 GAAAGAATAAGTGACTATAAA-AGGACTTTTCATGCTAGTGAATACCTTTTTCTTCATATTTCTC
65 GAAGGAATGAGTGACTATAAATA-GACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTC
* ** * * *
5935 AAGGTAAACATTCAATTATAAACTATTTTAACTAAAAATGTTAAAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA---TATAA
* * * * **********
5981 AAAAATTGAACTTAAAATCAATTTTGACATTATAAAACTATTTAAAGCGAGNNNNNNNNNNTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * *
6046 AAGGAATTAGTGACTATAAAT-GAACTTTGCTTGCCAATGAAT-CTGTTTTTCTTTATGTTTCTC
66 AAGGAATGAGTGACTATAAATAG-ACTTTTCTTGCCAATGAATGC-CTTTTTCTTCATGTTTCTC
* ** * *
6109 AAGGTCGACATTCAATTATTCTCTATTTTAACCAAAAATGTAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * *
6152 AAAAATATTAACTT-AAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAACAAAGTTTTT
1 AAAAAT-TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * ** * *
6216 GAAGAAATGGGAGACTATAAATAGACCTTTTTTTTG--AATAAATGTGTTTTTCTACACGTTT-T
65 GAAGGAATGAGTGACTATAAATAGA-C-TTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT
* * * * ** *
6278 CGAGGCAGGCATTCAATTATGGT-TGGTTTTAATGAAAAAT-TTA
128 CAAGGTAGACATTCAATTATAGTCT-GTTTTAACCAAAAATATAA
* * ** ********
6321 AGAAATTCAACTTAAATTCAATTATGAGATTATAAAATTATTTAAAGCGAGTAATANNNNNNNNN
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA-AGGCTTTT
* * * * * * *
6386 NAA-GAATGAGAGACTATAAATAGACTTTTCTTACCAATGAATGGCTTTTGCTACATGTTTTTCA
65 GAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * **
6450 AGGCA-AGCATTCAATTATAGTATGTTTTAATAAAAAATATAA
130 AGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * ** * *
6492 AAAATTTAAACTTAAAATCAATTATCAAATTATAAAATAATTTAAAGTGAGTGATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * *
6557 AAGGAATGAGTGACTATAAA-AGAACTTTTTTTACCAATGAATACCTTTTTCTTCATGTTTCTCA
66 AAGGAATGAGTGACTATAAATAG-ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * *
6621 AGGTATACATTCAATTATAGTCTATTTTAATCAAAAATGTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* ********************** *
6663 AATAATTCAACTTAAAATNNNNNNNNNNNNNNNNNNNNNNTTTAAAGCGAGTAATAAGGCTTTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* ** * * * ** * **
6728 AAGGAATAAAAGACTATAAATGGACTTTTTTTACCAATGAATGTTTTTTTCATCATGTTTCTTGA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* ** *
6793 GGTAGACATTCAATTATAGTCTATTTTAATGAAAAATA-GA
131 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * ************
6833 AGAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTGAAGCGAGTANNNNNNNNNNNN
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
********** * * * *
6898 NNNNNNNNNNTGACTATAAATGGACTTTTCTTGCTAGTGAATGCCTTTTTCTTTATGTTTCTCAA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* * * *
6963 GGTA-AGCATTCAATTATAATATGTTTTGACTAAAAATATAAA
131 GGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATAT-AA
* ** * * * * *
7005 AAAAATTGAACTTAATGTTAATTTTGAGATTATAAAACCATTTAATGTGAGTAATAAGG-TTTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
7069 AAAGAATGAGAGACTATAAAT-GTACTTTTCTTGTCAATAAATGACTTTTTCTACATGTTTC-CT
66 AAGGAATGAGTGACTATAAATAG-ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTC-
* * ** * *
7132 AAGGCA-AGCATTCGATTATAGTCTGTTTTAATGACAAATGTAA
129 AAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********** * *
7175 AAAAATTCAACTTAAAATCAANNNNNNNNNNATAAAACTATTTAAAGCTAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
** * *
7240 AAGGAATTTGAGACTATAAATAGA-TCTTTCTTACCAATGAATG-CTTTGTTCTTCACT-TTTCT
66 AAGGAATGAGTGACTATAAATAGACT-TTTCTTGCCAATGAATGCCTTT-TTCTTCA-TGTTTCT
* * * ** *
7302 CGAGCTAAACATTCAATTATAGTCTGTTTT-ATTACAAATAT-A
128 CAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
7344 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * *
7409 AAGGAATG-GTTGACTATAAAT-GAACTTTTCTTGCTAGTGAATGTCTTTTTCTTCATGTTTCTC
66 AAGGAATGAG-TGACTATAAATAG-ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTC
* * *
7472 AAGGTA-A-ATATCAAATTATAATCTGTTTTAACTAAAAATGTAAA
129 AAGGTAGACAT-TC-AATTATAGTCTGTTTTAACCAAAAATAT-AA
* * * * *
7516 AAAAATTGAACAT-AAATCAATT-TGGAGATTATAAAACCATTTAAAGTGAGAAATAAGACTTTT
1 AAAAATTCAACTTAAAATCAATTAT-GAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * * * *
7579 GAAGGGATGGGTGACTATAAA-CGAACTTTTCTTGCCAATGAAAGCTTTTTTCTTCACGTTTCTT
65 GAAGGAATGAGTGACTATAAATAG-ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTC
* * * * ** *
7643 GAGGTAGACATTGACTTATAGTCTATTTTAAGGAAAAATGTAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * ********** * * *
7686 GAAAATTCAACTTAAAATTAGTTATGNNNNNNNNNNACCATTTAAAGCGAGTAATAAGGCCTCTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * *
7751 AAGGATTGGGTGACTATAAATGGACTTTTCTTGCTAATGAATGCCTTTTTCCTT-ATGTTTTTTA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTT-CTTCATGTTTCTCA
* * * *
7815 AGGTA-A-A--CATTTATAATCTGTTTTAACTAAAAATGTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * ** * *
7853 AAAAAATGAACGTAAAATCAATTTTGAGATTATAGAACCATTTAAAATGAGAAATAAGGCTTTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
********* * * * *
7918 AAGGAATG-GNNNNNNNNNNATAGACTTTTCTTGCCAATGAAT-ACTTCTCTCTTCACGTTTCTT
66 AAGGAATGAG-TGACTATAAATAGACTTTTCTTGCCAATGAATGCCTT-TTTCTTCATGTTTCTC
* * * **
7981 GAGGTAGACATTC-ACTATAGTCTATTTTAAGGAAAAA-AGTAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAA
* ************ * *
8023 GAAAATTCAACTTAAAATCAATTATGANNNNNNNNNNNNATTTAAAGCGAGTAATAAGACCTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * **
8088 AAGGAATGGGTGACTATAAATGGACTTTCCGACTTTCCTTGCCAATGAATGTCTTGTTCTTCACA
66 AAGGAATGAGTGACTATAAAT--A------GACTTTTCTTGCCAATGAATGCCTTTTTCTTCATG
* * * * * *
8153 TTTCTCGAGGTACACATTCAATTATTGTCTATTTTAACAAAAAATGTAA
123 TTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********** * *
8202 AAATAA-TCAACTTAAAATNNNNNNNNNNATTGTAAAACTATTTAAAGCGAGTAATAAGGCTTTT
1 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* * * * *
8266 GAA-GAAT-ATGTGAGTATAAAT-GAACTTTTCTTACCAATTAAT-CCCTTTTCTTCACGTTTCT
65 GAAGGAATGA-GTGACTATAAATAG-ACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCT
** * * *
8327 TGAGTTAGACATTCAATTATAGT-TATTTTTAACC-AAAATGT-A
128 CAAGGTAGACATTCAATTATAGTCT-GTTTTAACCAAAAATATAA
********** *
8369 AAAAATTCAACTTAAAATCAATTATGAGATTATAAANNNNNNNNNNGCGAGTAATAAGACTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * * * * *
8434 AAAGAATGGGAGACTATAAATGGACTTTTCTTGCTAGTGAATGCCTTTTCCTTTATGTTTCTCGA
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
* * * * *
8499 GGTAAACATTGAATTATAATATGTTTTAACCAAAAATGTAAAA
131 GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA--TATAA
* * ********** * *
8542 AAAAATTGAACATAAAATNNNNNNNNNNATTATAAAACCATTTAAAGTGAGAAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * * * * **
8607 ATGGAATGGGTGAATATAAATGGACCGTTT-TTACCAATAAATGATTTTTTCTTCATGTTTC-CN
66 AAGGAATGAGTGACTATAAATAGA-CTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTC-
********* * **
8670 NNNNNNNNNATTCAATTATAGTCTGTTTTAATC-AAAATGCAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * ********** * *
8712 AACAGTTCAACCTAAAATCAATTATGAGATTATAAANNNNNNNNNNGTGAGCAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * *
8777 AAGGAATGCA-TGACTGTAAATGGACTTTTTTTGCCAATGAATG-CTTTTGCCTTCATGTTTCTT
66 AAGGAATG-AGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTT-TCTTCATGTTTCTC
* * * * * *
8840 AAGGTAGAGATCCAATTATAGTCTATTGTAACTAAAAATGTAA
129 AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********** * *
8883 AAAAATTCAACTTAAAATCAATTATGNNNNNNNNNNACTATTTAAAGTGAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** * * *
8948 AAAGAATTG-GTGATTTTAAATGGACTTTTCTTATCAATGAATGCCTTTTTTTTTATGTTTTTCA
66 AAGGAA-TGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * * * * * *
9012 AGTTAAACATTGAATTACAATCTGTTTTGACTAAAAATGTAAAAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA--T-ATAA
*** * * * ********** *
9057 AAAAAAAGAACTTAAAGTCAATTTTGAGATTATAAAATCANNNNNNNNNNGTAATAAGGCTTTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * ** *
9122 AAAGAATGAGAGACTATAAATGGGCTTTTCTTGCCAAAAAATGGCTTTTTC-T-ATGCGTTTC-C
66 AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCAT--GTTTCTC
* ** ** *
9184 TAAGGCA-AGCATTTTATTATAGTCTGTTTTAATGAAAAATGTAA
129 -AAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********** * *
9228 AAAAATTCAACTNNNNNNNNNNTATAAGATTATAAAACCATTTAAAGCTAGTAATAAGG-TTTGT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTT-T
* * ***
9292 GAAGAAATTGGAGT--CTATAAATAGACTTTTCTTGCCAATGAATG-CTTTGTTCTTCACGTNNN
65 GAAGGAA-T-GAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTT-TTCTTCATGTTTC
******* * * * *
9354 NNNNNNNAAACATTTAATTATAGTCTGTTTT-GCTAAAAAATATAA
127 TCAAGGTAGACATTCAATTATAGTCTGTTTTAAC-CAAAAATATAA
* * * *
9399 AAAAGTTCAGCTTAAAATCAATTATGAGATTATAAAATCATTT-AAGCGAGTGATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
********** ** *
9463 AAGGAATG-GTTNNNNNNNNNNAGACTTTTCTTGCCAATGAATG-CTTTGTTCCACACGTTTCTC
66 AAGGAATGAG-TGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTT-TTCTTCATGTTTCTC
* * * *
9526 GAGCTAAACATTCAATTATAGT-TCGTTTT-ACAAAAAAATATAA
129 AAGGTAGACATTCAATTATAGTCT-GTTTTAAC-CAAAAATATAA
********** * *
9569 AAAAATTCAACTTAAANNNNNNNNNNAGATTAT-AAACCATTTAAAGCGAGTGATAAGGTTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
* * * * *
9633 AAGGAATG-GTTGACTATAAATGGACTTTTCTTGCTAGTGAATTCC-TTTTCTTCATGTTTTTCA
66 AAGGAATGAG-TGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * * * * * *
9696 AGATAAATATTGAATTATAATATGTTTTAA-CTAAAATGTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * * * *
9737 AAACAAATGAACGTAAAATCAATTTTTAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTT
1 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTT
* ********** * * * **
9802 GAAGGAATAAGTGACTNNNNNNNNNNTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTTG
65 GAAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCA
* * * **
9867 AGGTAGACATTCACTTATAGTCTATATTAAGGAAAAA-AGTAA
130 AGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAA
* * * *
9909 GAAAACTCAACTTAAAATCAAATATGAGATTATAAAATCATTTAAAGCGAGTAAT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAAT
Statistics
Matches: 4195, Mismatches: 1338, Indels: 328
0.72 0.23 0.06
Matches are distributed among these distances:
166 9 0.00
167 190 0.05
168 154 0.04
169 380 0.09
170 895 0.21
171 1428 0.34
172 402 0.10
173 235 0.06
174 350 0.08
175 25 0.01
178 58 0.01
179 67 0.02
180 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.34
Consensus pattern (171 bp):
AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
AAGGAATGAGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAA
GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAA
Found at i:7597 original size:511 final size:508
Alignment explanation
Indices: 4096--9963 Score: 2574
Period size: 511 Copynumber: 11.4 Consensus size: 508
4086 NNNNNNNNNN
* * * * *
4096 AAAAATTCAACTTAAAATCAATAATGAGATCATAAAACCATTT-AAGCGAGTTATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
* * * * * * * *
4160 AAGGAAT-ATGTGACTATAAATGGACTTTTCTTGCCAATCAATGCCTTTTTCTTCACGTTTCTCA
66 AAGGAATGA-GAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTCG
* * * * * * * *
4224 AGGTTGACATTCAATTATAATCTATTTTGATAAAAAATGTTAAAACAAATTGAACTTAAAATCAA
130 AGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAAT-AT-AAA-AAATTCAACTTAAAATCAA
* * ** * **********
4289 TTTTGAGATAATAAAATAATTTAAAGTGAGTAATAAGGCNNNNNNNNNNATGGGTGACTATAAAT
192 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG-ATTTTGAAGAAT-GGTGACTATAAAT
* * * * * * * ** * * *
4354 GGACTTTTTTTACCAATCAATGCCTTTTTCTTTATGTTTCTTGAGGTACACATTCAATTTTAGTT
255 GAACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTA-ACATTCAATTATAATA
* * * * * * *
4419 TG-TTTAACTAAAAATAT-AAAACAAGTCAACTTAAAACCAACTATGAGATTATGAAACCATTTA
319 TGTTTTAACTAAAAATATAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTA
* * * ** * * * * *
4482 AAGCGAGTAATAAGTCTGTAGAAAAAATAAGAGACTATAAATGGACTTTTCTTGACAATGAATG-
384 AAGTGAGTAATAAG-CTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAAATGA
* * ** * * *
4546 -TTTTT-TTCACGTTTCTCGAGTTAGACAGTCAATTATAGCCTGTTTTAA-CGAAAAATGTAA
448 CTTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATC-AAAAATGTAA
**********************
4606 AAAAATTCAACTTAAAATCAATNNNNNNNNNNNNNNNNNNNNNNAAG-TGAGTAATAAGGCTTTT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCT-AGTAATAAGGCTTTT
* * * * * * * *
4670 GAAGGAATGAGTGACTATAAATAGAGTTTTCTTGCCAACGAATGCCTTTTTCTTCA-TGTTTTTT
65 GAAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACT-TTTCTC
* * * ** *
4734 GAGGTAGACATTCAATTATTGTCTCTTTTAACAAAAAATATAAGAATAA-TCGACTTAAAATCAA
129 GAGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAA-AA-AATTCAACTTAAAATCAA
* * * * * * *
4798 TTGTGAGATTATAAAACCATTTAAACCAAGTAATAAAGCTTTTGAAAGAATGGGTAACTATCAAT
192 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTG-AAGAAT-GGTGACTAT-AAA
**
4863 TGAA-TTTT-TTTATAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAAT
254 TGAACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGT-AACATTCAATTATAAT
* *
4926 ATG-TTTAACCAGAGAAA-AGTAAAATATAAATTAAACCTTAAAATCAATTTTGAG-TTATAAAA
318 ATGTTTTAACTA-A-AAATA-TAAAA-A-AAATTGAA-CTTAAAATCAATTTTGAGATTATAAAA
* * * * * * * *
4988 CAATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATATATAAACGTTT-TTGACAA
377 CCATTTAAAGTGAGTAATAA-GCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAA
* * * * * * * *
5052 TGAATG-CATTTTTCTTCATGTTTCTCGATGTAGACATTCAATTATAGTTTGTTGTAACCAAAAA
441 TAAATGAC-TTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATCAAAAA
*
5116 TATAA
504 TGTAA
** * * * * ***
5121 AAAAATTTGACTTAAAATTAATTATGAGTTTATAAAACTATTTAAAGCGAGTAATAAGGCTTNNN
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
******* * * * * * * *
5186 NNNNNNNGGGTGACTATAAATGGACTTTTCTT-CTTAATGAAT-TTCTTTTTCTACA-TGTTTCT
66 AAGGAATGAGAGACTATAAATAGACTTTTTTTAC-CAATGAATGCT-TTTTTCTTCACT-TTTCT
** * * **
5248 CGAGGC-AGGTATTCAATTATAGTCTATTTCAATGAAAAATATAAAAAAATTCAACTTAAAATTN
128 CGA-GCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATAT-AAAAAATTCAACTTAAAATCA
********* * * * * * *
5312 NNNNNNNNNTTATAAAATCATTTAAAGGGAGTAATAAGGCTTATGAAGGAATGGGTAACTAGAAA
191 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAA-GAAT-GGTGACTATAAA
* * * ********** ** *
5377 TAAACTTTTCTTGCCAATGAATGCCTTTNNNNNNNNNNTTCTTGAGGTAGACATTCAATTATGAT
254 TGAACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTA-ACATTCAATTATAAT
* * * * * * *
5442 ATGCTTTAGCCAACAATGTAAAAAAAAATTGAACCTAAAATCAATTTTGA-ATTATAAAATCATT
318 ATGTTTTAACTAAAAATAT-AAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* ********* *
5506 TAAAGCGAGTAATAAGGCTTTNNNNNNNNNNG-GTGACTATAAAT-AGACTTTTCTTGCCAATGA
382 TAAAGTGAGTAATAA-GCTTT-TGAAGGAATGAGTGACTATAAATGA-ACTTTTCTTGCCAATAA
* * ** ** * * ** * *
5569 AT-TCTTTTTTCTTCACGGCTCTCAAGTTAGACCTTCAATTATAGTATGCTTTAACCAAAAATAT
444 ATGAC-TTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATCAAAAATGT
5633 AA
507 AA
* * * * * * *
5635 TAAAATTTAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAATCTACTAATAAGGTTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
* * * * * *
5700 AAAGGAATGAGTGACTATAAATAGACTTTTTTTGCTAATGAATACTTTTTTCTTCACATTTCTCT
66 -AAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTCG
* * ** * *
5765 AGTTAGACATTCAATTACAGTCTGTTTTAACCAGAAATGTAAAATAATTCAACTTAAAATCAATT
130 AGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAA-AATTCAACTTAAAATCAATT
* * * *
5830 ATGAGATTATAAAACAATCTAAAGC-AGGTAATAAGGATTTTGAAAGAATAAGTGACTATAAAAG
194 ATGAGATTATAAAACCATTTAAAGCGA-GTAATAAGGATTTTG-AAGAAT-GGTGACTATAAATG
* * * *
5894 GACTTTTCATGCTAGTGAATACCTTTTTCTTCATATTTCTCAAGGTAAACATTCAATTATAA-AC
256 AACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGT-AACATTCAATTATAATA-
* * * *
5958 TATTTTAACTAAAAATGTTAAAAAAAAATTGAACTTAAAATCAATTTTGACATTATAAAACTATT
319 TGTTTTAACTAAAAAT-AT-AAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* ********* * * *
6023 TAAAGCGAGNNNNNNNNNNTTTGAAGGAATTAGTGACTATAAATGAACTTTGCTTGCCAATGAAT
382 TAAAGTGAG-TAATAAGCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAAAT
*** * * ** *
6088 CTGTTTTTCTTTATGTTTCTCAAGGTCGACATTCAATTATTCTCTATTTTAACCAAAAATGTAA
446 GACTTTTTCTTCATGTTTCTCAAGG-CAACATTCAATTATAGTCTATTTTAATCAAAAATGTAA
* * * * *
6152 AAAAATATTAACTT-AAATCAATTATGAGATTATAAAACAATTTAAAGCAAGTAACAAAGTTTTT
1 AAAAAT-TCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTT
* * ** * * *
6216 GAAGAAATGGGAGACTATAAATAGACCTTTTTTT-TGAATAAATG-TGTTTTTCTACACGTTT-T
65 GAAGGAATGAGAGACTATAAATAGA-CTTTTTTTACCAATGAATGCT-TTTTTCTTCACTTTTCT
* * * * *
6278 CGAGGC-AGGCATTCAATTATGGT-TGGTTTTAATGAAAAATTTAAGAAATTCAACTTAAATTCA
128 CGA-GCTAGACATTCAATTATAGTCT-GTTTTAATGAAAAATATAAAAAATTCAACTTAAAATCA
** ********* *
6341 ATTATGAGATTATAAAATTATTTAAAGCGAGTAATANNNNNNNNNNAAGAATGAGAGACTATAAA
191 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATA-AGGATTTTGAAGAATG-GTGACTATAAA
* * * * * * * * *
6406 T-AGACTTTTCTTACCAATGAATGGCTTTTGCTACATGTTTTTCAAGGCAAGCATTCAATTATAG
254 TGA-ACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTAA-CATTCAATTATAA
* * * * * **
6470 TATGTTTTAA-TAAAAA-ATATAAAAAATTTAAACTTAAAATCAATTATCAAATTATAAAATAAT
317 TATGTTTTAACTAAAAATATA-AAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCAT
* * * * *
6533 TTAAAGTGAGTGATAAGGCTTTTGAAGGAATGAGTGACTATAAAAGAACTTTTTTTACCAATGAA
381 TTAAAGTGAGTAATAA-GCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAAA
*
6598 T-ACCTTTTTCTTCATGTTTCTCAAGGTATACATTCAATTATAGTCTATTTTAATCAAAAATGTA
445 TGA-CTTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATCAAAAATGTA
6662 A
508 A
* ********************** * *
6663 AATAATTCAACTTAAAATNNNNNNNNNNNNNNNNNNNNNNTTTAAAGCGAGTAATAAGGCTTTTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
* * * * * *
6728 AAGGAATAAAAGACTATAAATGGACTTTTTTTACCAATGAATGTTTTTTTCATCA-TGTTTCTTG
66 AAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACT-TTTCTCG
* * * *
6792 AGGTAGACATTCAATTATAGTCTATTTTAATGAAAAATAGAAGAAATTCAACTTAAAATCAATTA
130 AGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTTAAAATCAATTA
* ******************** *
6857 TGAGATTATAAAACCATTTGAAGCGAGTANNNNNNNNNNNNNNNNNNNNNNTGACTATAAATGGA
195 TGAGATTATAAAACCATTTAAAGCGAGTA--ATAAGGATTTTGAAGAATGGTGACTATAAATGAA
*
6922 CTTTTCTTGCTAGTGAATGCCTTTTTCTTTATGTTTCTCAAGGTAAGCATTCAATTATAATATGT
258 CTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTAA-CATTCAATTATAATATGT
* ** * *
6987 TTTGACTAAAAATATAAAAAAAATTGAACTTAATGTTAATTTTGAGATTATAAAACCATTTAATG
322 TTTAACTAAAAATATAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAG
* * * * * *
7052 TGAGTAATAAGGTTTTAAAAGAATGAGAGACTATAAATGTACTTTTCTTGTCAATAAATGACTTT
387 TGAGTAATAAGCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAAATGACTTT
* * * * *
7117 TTCTACATGTTTC-CTAAGGCAAGCATTCGATTATAGTCTGTTTTAATGACAAATGTAA
452 TTCTTCATGTTTCTC-AAGGCAA-CATTCAATTATAGTCTATTTTAATCAAAAATGTAA
********** *
7175 AAAAATTCAACTTAAAATCAANNNNNNNNNNATAAAACTATTTAAAGCTAGTAATAAGGCTTTTG
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
** * *
7240 AAGGAATTTGAGACTATAAATAGA-TCTTTCTTACCAATGAATGCTTTGTTCTTCACTTTTCTCG
66 AAGGAATGAGAGACTATAAATAGACT-TTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTCG
* * *
7304 AGCTAAACATTCAATTATAGTCTGTTTT-ATTACAAATATAAAAAATTCAACTTAAAATCAATTA
130 AGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTTAAAATCAATTA
*
7368 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGTTGACTATAAATGAA
195 TGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAA-GAATGG-TGACTATAAATGAA
* *
7433 CTTTTCTTGCTAGTGAATGTCTTTTTCTTCATGTTTCTCAAGGTAA-ATATCAAATTATAATCTG
258 CTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTAACAT-TC-AATTATAATATG
* * *
7497 TTTTAACTAAAAATGTAAAAAAAATTGAACAT-AAATCAATTTGGAGATTATAAAACCATTTAAA
321 TTTTAACTAAAAATATAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAA
* * * *
7561 GTGAGAAATAAGACTTTTGAAGGGATGGGTGACTATAAACGAACTTTTCTTGCCAATGAAA-G-C
386 GTGAGTAATAAG-CTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAAT-AAATGAC
* ** * * * **
7624 TTTTTTCTTCACGTTTCTTGAGGTAGACATTGACTTATAGTCTATTTTAAGGAAAAATGTAA
449 -TTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATCAAAAATGTAA
* * * ********** * * * * *
7686 GAAAATTCAACTTAAAATTAGTTATGNNNNNNNNNNACCATTTAAAGCGAGTAATAAGGCCTCTA
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
* * * * * * * * * *
7751 AAGGATTGGGTGACTATAAATGGACTTTTCTTGCTAATGAATGCCTTTTTCCTT-A-TGTTTTTT
66 AAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATG-CTTTTTTCTTCACT-TTTCTC
* * * * * * * *
7814 AAGGTA-A-A--CATTTATAATCTGTTTTAACT-AAAAATGTAAAAAAAATGAACGTAAAATCAA
129 GAGCTAGACATTCAATTATAGTCTGTTTTAA-TGAAAAATAT-AAAAAATTCAACTTAAAATCAA
* * ** * * * *********
7874 TTTTGAGATTATAGAACCATTTAAAATGAGAAATAAGGCTTTTAAAGGAATGGNNNNNNNNNNAT
192 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAA-GAATGG-TGACTATAAAT
* * * * * ** * *
7939 -AGACTTTTCTTGCCAATGAAT-ACTTCTCTCTTCACGTTTCTTGAGGTAGACATTC-ACTATAG
255 GA-ACTTTTCTTGCTAGTGAATGCCTT-TTTCTTCATGTTTCTCAAGGTA-ACATTCAATTATAA
* * ** * * * ************
8001 TCTATTTTAAGGAAAAA-AGT-AAGAAAATTCAACTTAAAATCAATTATGANNNNNNNNNNNNAT
317 TATGTTTTAACTAAAAATA-TAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCAT
* * * *
8064 TTAAAGCGAGTAATAAGACCTTTGAAGGAATGGGTGACTATAAATGGACTTTCCGACTTTCCTTG
381 TTAAAGTGAGTAATAAG-CTTTTGAAGGAATGAGTGACTATAAAT-GA-------ACTTTTCTTG
* * * ** * * *
8129 CCAATGAATGTCTTGTTCTTCACATTTCTCGAGGTACACATTCAATTATTGTCTATTTTAA-CAA
437 CCAATAAATGACTTTTTCTTCATGTTTCTCAAGGCA-ACATTCAATTATAGTCTATTTTAATC-A
8193 AAAATGTAA
500 AAAATGTAA
********** * * *
8202 AAATAA-TCAACTTAAAATNNNNNNNNNNATTGTAAAACTATTTAAAGCGAGTAATAAGGCTTTT
1 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTT
* * * * ** *
8266 GAA-GAAT-ATGTGAGTATAAAT-GAACTTTTCTTACCAATTAAT-CCCTTTTCTTCACGTTTCT
65 GAAGGAATGA-GAGACTATAAATAG-ACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCT
* * * ** *
8327 TGAGTTAGACATTCAATTATAGT-TATTTTTAA-CCAAAATGTAAAAAATTCAACTTAAAATCAA
128 CGAGCTAGACATTCAATTATAGTCT-GTTTTAATGAAAAATATAAAAAATTCAACTTAAAATCAA
********** *
8390 TTATGAGATTATAAANNNNNNNNNNGCGAGTAATAA-GACTTTTGAAAGAATGGGAGACTATAAA
192 TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGA-TTTTG-AAGAAT-GGTGACTATAAA
* * * * *
8454 TGGACTTTTCTTGCTAGTGAATGCCTTTTCCTTTATGTTTCTCGAGGTAAACATTGAATTATAAT
254 TGAACTTTTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGT-AACATTCAATTATAAT
* * * **********
8519 ATGTTTTAACCAAAAATGTAAAAAAAAATTGAACATAAAATNNNNNNNNNNATTATAAAACCATT
318 ATGTTTTAACTAAAAATAT-AAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* * * * * * *
8584 TAAAGTGAGAAATAAGGCTTTTGATGGAATGGGTGAATATAAATGGACCGTTT-TTACCAATAAA
382 TAAAGTGAGTAATAA-GCTTTTGAAGGAATGAGTGACTATAAAT-GAACTTTTCTTGCCAATAAA
* ******** * *
8648 TGATTTTTTCTTCATGTTTC-CNNNNNNNNNNATTCAATTATAGTCTGTTTTAATC-AAAATGCA
445 TGACTTTTTCTTCATGTTTCTC--AAGGCAACATTCAATTATAGTCTATTTTAATCAAAAATGTA
8711 A
508 A
* * * ********** *
8712 AACAGTTCAACCTAAAATCAATTATGAGATTATAAANNNNNNNNNNG-TGAGCAATAAGGCTTTT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCT-AGTAATAAGGCTTTT
* * * * **
8776 GAAGGAATGCA-TGACTGTAAATGGACTTTTTTTGCCAATGAATGCTTTTGCCTTCA-TGTTTCT
65 GAAGGAATG-AGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACT-TTTCT
** * * * * * *
8839 TAAGGTAGAGATCCAATTATAGTCTATTGTAACT-AAAAATGTAAAAAAATTCAACTTAAAATCA
128 CGAGCTAGACATTCAATTATAGTCTGTTTTAA-TGAAAAATAT-AAAAAATTCAACTTAAAATCA
********** * * * * *
8903 ATTATGNNNNNNNNNNACTATTTAAAGTGAGTAATAAGGCTTTTGAAAGAATTGGTGATTTTAAA
191 ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTG-AAGAA-TGGTGACTATAAA
* * * * * * * * *
8968 TGGACTTTTCTT-ATCAATGAATGCCTTTTTTTTTATGTTTTTCAAGTTAAACATTGAATTACAA
254 TGAACTTTTCTTGCT-AGTGAATGCCTTTTTCTTCATGTTTCTCAAGGT-AACATTCAATTATAA
* * * ** * *
9032 TCTGTTTTGACTAAAAATGTAAAAAAAAAAAAGAACTTAAAGTCAATTTTGAGATTATAAAATCA
317 TATGTTTTAACTAAAAA--TATAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCA
********** * * * ** *
9097 NNNNNNNNNNGTAATAAGGCTTTTAAAAGAATGAGAGACTATAAATGGGCTTTTCTTGCCAAAAA
380 TTTAAAGTGAGTAATAA-GCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAA
* ** * *
9162 ATGGCTTTTTC-T-ATGCGTTTC-CTAAGGCAAGCATTTTATTATAGTCTGTTTTAATGAAAAAT
444 ATGACTTTTTCTTCAT--GTTTCTC-AAGGCAA-CATTCAATTATAGTCTATTTTAATCAAAAAT
9224 GTAA
505 GTAA
********** * *
9228 AAAAATTCAACTNNNNNNNNNNTATAAGATTATAAAACCATTTAAAGCTAGTAATAAGG-TTTGT
1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTT-T
* * * * * * *****
9292 GAAGAAATTG-GAGTCTATAAATAGACTTTTCTTGCCAATGAATGCTTTGTTCTTCACGTNNNNN
65 GAAGGAA-TGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTC
***** * * ** * *
9356 NNNNNAAACATTTAATTATAGTCTGTTTTGCTAAAAAATATAAAAAAGTTCAGCTTAAAATCAAT
129 GAGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAA-TTCAACTTAAAATCAAT
* * * ***********
9421 TATGAGATTATAAAATCATTT-AAGCGAGTGATAAGGCTTTTGAAGGAATGGTTNNNNNNNNNNA
193 TATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAA-GAATGGTGACTATAAATGA
* * ** * * * *
9485 GACTTTTCTTGCCAATGAATG-CTTTGTTCCACACGTTTCTCGAGCTAAACATTCAATTATAGT-
257 -ACTTTTCTTGCTAGTGAATGCCTTT-TTCTTCATGTTTCTCAAGGT-AACATTCAATTATAATA
* * **********
9548 TCGTTTT-AC-AAAAAAATATAAAAAAATTCAACTTAAANNNNNNNNNNAGATTAT-AAACCATT
319 T-GTTTTAACTAAAAATATA-AAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* * * * * * *
9610 TAAAGCGAGTGATAAGGTTTTTGAAGGAATG-GTTGACTATAAATGGACTTTTCTTGCTAGTGAA
382 TAAAGTGAGTAATAA-GCTTTTGAAGGAATGAG-TGACTATAAATGAACTTTTCTTGCCAATAAA
* * * ** * * * * * *
9674 T-TCCTTTTCTTCATGTTTTTCAAGATAAATATTGAATTATAATATGTTTTAA-CTAAAATGTAA
445 TGACTTTTTCTTCATGTTTCTCAAG-GCAACATTCAATTATAGTCTATTTTAATCAAAAATGTAA
* * * * * * * *
9737 AAACAAATGAACGTAAAATCAATTTTTAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTT
1 AAA-AATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTT
* * ********** * ** * *
9802 GAAGGAATAAGTGACTNNNNNNNNNNTTTTCTTGTCAATGAATGCTTTTTTCTTCACGTTTCTTG
65 GAAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTCG
* * * * * * *
9867 AGGTAGACATTCACTTATAGTCTATATTAAGGAAAAA-AGTAAGAAAACTCAACTTAAAATCAAA
130 AGCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATA-TAA-AAAATTCAACTTAAAATCAAT
*
9931 TATGAGATTATAAAATCATTTAAAGCGAGTAAT
193 TATGAGATTATAAAACCATTTAAAGCGAGTAAT
Statistics
Matches: 3985, Mismatches: 1182, Indels: 381
0.72 0.21 0.07
Matches are distributed among these distances:
507 27 0.01
508 136 0.03
509 188 0.05
510 318 0.08
511 795 0.20
512 465 0.12
513 217 0.05
514 436 0.11
515 654 0.16
516 460 0.12
517 204 0.05
518 23 0.01
519 61 0.02
520 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.34
Consensus pattern (508 bp):
AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCTAGTAATAAGGCTTTTG
AAGGAATGAGAGACTATAAATAGACTTTTTTTACCAATGAATGCTTTTTTCTTCACTTTTCTCGA
GCTAGACATTCAATTATAGTCTGTTTTAATGAAAAATATAAAAAATTCAACTTAAAATCAATTAT
GAGATTATAAAACCATTTAAAGCGAGTAATAAGGATTTTGAAGAATGGTGACTATAAATGAACTT
TTCTTGCTAGTGAATGCCTTTTTCTTCATGTTTCTCAAGGTAACATTCAATTATAATATGTTTTA
ACTAAAAATATAAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAG
TAATAAGCTTTTGAAGGAATGAGTGACTATAAATGAACTTTTCTTGCCAATAAATGACTTTTTCT
TCATGTTTCTCAAGGCAACATTCAATTATAGTCTATTTTAATCAAAAATGTAA
Found at i:7973 original size:338 final size:331
Alignment explanation
Indices: 7380--8557 Score: 848
Period size: 338 Copynumber: 3.5 Consensus size: 331
7370 AGATTATAAA
* * * *
7380 ACCATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGTTGACTATAAATGAACTTTTCTTGCTA
1 ACCATTTAAAGCGAGTAATAAGGCCTCTAAAGGAATGGGTGACTATAAATGAACTTTTCTTGCTA
* *
7445 GTGAATGTCTTTTTCTTCATGTTTCTCAAGGTAAATATCAAATTATAATCTGTTTTAACTAAAAA
66 ATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAAATATCAAATTATAATCTGTTTTAACTAAAAA
*
7510 TGTAAAAAAAATTGAACATAAATCAATTTGGAGATTATAAAACCATTTAAAGTGAGAAATAAGAC
131 TGTAAAAAAAATTGAACATAAATCAATTTGGAGATTATAAAACCATTTAAAATGAGAAATAAGAC
* * * *
7575 TTTTGAAGGGATGGGTGACTATAAACGAACTTTTCTTGCCAATGAAAGCTTTTTTCTTCACGTTT
196 TTTTAAAGGAATGGGTGACTATAAACGAACTTTTCTTGCCAATGAAAGCTTCTCTCTTCACGTTT
* *
7640 CTTGAGGTAGACATTGACTTATAGTCTATTTTAAGGAAAAATGTAAGAAAATTCAACTTAAAATT
261 CTTGAGGTAGACATTCAC-TATAGTCTATTTTAAGGAAAAAAGTAAGAAAATTCAACTTAAAATT
7705 AGTTATG
325 AGTTATG
* *
7712 NNNNNNNNNNACCATTTAAAGCGAGTAATAAGGCCTCTAAAGGATTGGGTGACTATAAATGGACT
1 ----------ACCATTTAAAGCGAGTAATAAGGCCTCTAAAGGAATGGGTGACTATAAATGAACT
* * *
7777 TTTCTTGCTAATGAATGCCTTTTTCCTT-ATGTTTTTTAAGGT-AA-A-C-ATTTATAATCTGTT
56 TTTCTTGCTAATGAATGCCTTTTT-CTTCATGTTTCTCAAGGTAAATATCAAATTATAATCTGTT
* * *
7837 TTAACTAAAAATGTAAAAAAAA-TGAACGTAAAATCAATTTTGAGATTATAGAACCATTTAAAAT
120 TTAACTAAAAATGTAAAAAAAATTGAACAT-AAATCAATTTGGAGATTATAAAACCATTTAAAAT
* ******** *
7901 GAGAAATAAGGCTTTTAAAGGAATGGNNNNNNNNNNATA-G-ACTTTTCTTGCCAATGAATA-CT
184 GAGAAATAAGACTTTTAAAGGAATGG--GTGACTATAAACGAACTTTTCTTGCCAATGAA-AGCT
7963 TCTCTCTTCACGTTTCTTGAGGTAGACATTCACTATAGTCTATTTTAAGGAAAAAAGTAAGAAAA
246 TCTCTCTTCACGTTTCTTGAGGTAGACATTCACTATAGTCTATTTTAAGGAAAAAAGTAAGAAAA
* *
8028 TTCAACTTAAAATCAATTATG
311 TTCAACTTAAAATTAGTTATG
** * * *
8049 ANNNNNNNNNNNNATTTAAAGCGAGTAATAAGACCTTTGAAGGAATGGGTGACTATAAATGGACT
1 A----------CCATTTAAAGCGAGTAATAAGGCCTCTAAAGGAATGGGTGACTATAAAT-GA--
* * * * ** *
8114 TTCCGACTTTCCTTGCCAATGAATGTCTTGTTCTTCACATTTCTCGAGGTACACAT-TC-AATTA
53 -----ACTTTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTA-A-ATATCAAATTA
** * * * * * ********** * *
8177 TTGTCTATTTTAACAAAAAATGTAAAAATAA-TCAACTTAAAATNNNNNNNNNNATTGTAAAACT
111 TAATCTGTTTTAACTAAAAATGTAAAAAAAATTGAACAT-AAATCAATTTGGAGATTATAAAACC
** * * * ** * * * *
8241 ATTTAAAGCGAGTAATAAGGCTTTTGAA-GAATATGTGAGTATAAATGAACTTTTCTTACCAATT
175 ATTTAAAATGAGAAATAAGACTTTTAAAGGAATGGGTGACTATAAACGAACTTTTCTTGCCAATG
** * * ** *
8305 AATCCCTT-T-TCTTCACGTTTCTTGAGTTAGACATTCAATTATAGT-TATTTTTAA-CCAAAAT
240 AA-AGCTTCTCTCTTCACGTTTCTTGAGGTAGACATTC-ACTATAGTCTA-TTTTAAGGAAAAAA
* *
8366 GTAA-AAAATTCAACTTAAAATCAATTATG
302 GTAAGAAAATTCAACTTAAAATTAGTTATG
* * * * * *
8395 A-GATTATAAANNNNNNNNNNGCGAGTAATAAGACTTTTGAAA-GAATGGGAGACTATAAATGGA
1 ACCATT-TAAA----------GCGAGTAATAAGGCCTCT-AAAGGAATGGGTGACTATAAATGAA
* * * * * ** *
8458 CTTTTCTTGCTAGTGAATGCCTTTTCCTTTATGTTTCTCGAGGTAAACATTGAATTATAATATGT
54 CTTTTCTTGCTAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAAATATCAAATTATAATCTGT
*
8523 TTTAACCAAAAATGTAAAAAAAAATTGAACATAAA
119 TTTAACTAAAAATGT-AAAAAAAATTGAACATAAA
8558 ATNNNNNNNN
Statistics
Matches: 669, Mismatches: 117, Indels: 103
0.75 0.13 0.12
Matches are distributed among these distances:
327 1 0.00
335 3 0.00
336 5 0.01
337 101 0.15
338 200 0.30
339 13 0.02
340 8 0.01
341 2 0.00
342 83 0.12
343 3 0.00
344 3 0.00
345 33 0.05
346 62 0.09
347 40 0.06
348 36 0.05
349 76 0.11
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.34
Consensus pattern (331 bp):
ACCATTTAAAGCGAGTAATAAGGCCTCTAAAGGAATGGGTGACTATAAATGAACTTTTCTTGCTA
ATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAAATATCAAATTATAATCTGTTTTAACTAAAAA
TGTAAAAAAAATTGAACATAAATCAATTTGGAGATTATAAAACCATTTAAAATGAGAAATAAGAC
TTTTAAAGGAATGGGTGACTATAAACGAACTTTTCTTGCCAATGAAAGCTTCTCTCTTCACGTTT
CTTGAGGTAGACATTCACTATAGTCTATTTTAAGGAAAAAAGTAAGAAAATTCAACTTAAAATTA
GTTATG
Done.