Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400032.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3254.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1485
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.23

Warning! 512 characters in sequence are not A, C, G, or T


Found at i:350 original size:171 final size:155

Alignment explanation


    Indices: 147--465  Score: 298
    Period size: 171  Copynumber: 2.0  Consensus size: 155

        137 AAAATCAATT

                               *     *         *                       *     
        147 ATGAGATTATAAAACCATTTAAAGCGGGTAATAAGGCTTTAAAAGGAATG-AGTGACTATAAATA
          1 ATGAGATTATAAAACCATTAAAAGCAGGTAATAAGCCTTTAAAAGGAA-GAAGTGACTACAAATA

                                          **                                 
        211 AACTTTTCTTCTCAATGAATGACTTTTTCTGTACGTTTCCTAAGGTAGACATTCAATTATAGTCT
         65 AACTTTTCTTCTCAATGAATG-CTTTTT-TACACGTTTCCTAAGGTAGACATTCAATTATAGTCT

                                        
        276 GTTTTAACAAAAAATATAAAAAAATTCA
        128 GTTTTAACAAAAAATATAAAAAAATTCA

                                                                  **         
        304 ANNNNNNNNNNNNNNTGAGATTATAAAACCATTAAAAGCAGGTAATAAGCCTTTTGAAGGAAGAA
          1 A--------------TGAGATTATAAAACCATTAAAAGCAGGTAATAAGCCTTTAAAAGGAAGAA

               *        **                    *         *    ** *      *    *
        369 GTGGCTACAAATGGACTTTTCTTCTCAATGAATGGTTTTTTACATGTTTTTTGAGGTAGGCATTT
         52 GTGACTACAAATAAACTTTTCTTCTCAATGAATGCTTTTTTACACGTTTCCTAAGGTAGACATTC

                   *           *            
        434 AATTATATTCTGTTTTAACCAAAAATATAAAA
        117 AATTATAGTCTGTTTTAACAAAAAATATAAAA

        466 NNNNNNNNNN


Statistics
Matches: 127,  Mismatches: 20, Indels: 18
        0.77            0.12        0.11

Matches are distributed among these distances:
 157    1  0.01
 169   47  0.37
 170    6  0.05
 171   73  0.57

ACGTcount: A:0.37, C:0.11, G:0.15, T:0.33


Consensus pattern (155 bp):   
ATGAGATTATAAAACCATTAAAAGCAGGTAATAAGCCTTTAAAAGGAAGAAGTGACTACAAATAA
ACTTTTCTTCTCAATGAATGCTTTTTTACACGTTTCCTAAGGTAGACATTCAATTATAGTCTGTT
TTAACAAAAAATATAAAAAAATTCA
Done.