Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400038.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3259.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1517
ACGTcount: A:0.12, C:0.03, G:0.05, T:0.14

Warning! 1003 characters in sequence are not A, C, G, or T


Found at i:58 original size:32 final size:32

Alignment explanation


    Indices: 22--86  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

         12 GTTTTGGGTT

                                            
         22 ATAATAGATCATATTTGGATGTTTGAATTAAC
          1 ATAATAGATCATATTTGGATGTTTGAATTAAC

                                            
         54 ATAATAGATCATATTTGGATGTTTGAATTAAC
          1 ATAATAGATCATATTTGGATGTTTGAATTAAC

             
         86 A
          1 A

         87 AGTATGAAAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40


Consensus pattern (32 bp):   
ATAATAGATCATATTTGGATGTTTGAATTAAC
Done.