Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400047.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3267.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.27

Warning! 497 characters in sequence are not A, C, G, or T


Found at i:219 original size:18 final size:18

Alignment explanation


    Indices: 187--224  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        177 TAAATATTTC

                               
        187 TTTTTTACTAAAATTAGAT
          1 TTTTTTACTAAAATT-GAT

                      *       
        206 TTTTTTACT-TAATTGAT
          1 TTTTTTACTAAAATTGAT

              
        223 TT
          1 TT

        225 GTTACGATAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  17    5  0.28
  18    4  0.22
  19    9  0.50

ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61


Consensus pattern (18 bp):   
TTTTTTACTAAAATTGAT
Done.