Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400050.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_327.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3175
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.20

Warning! 1500 characters in sequence are not A, C, G, or T


Found at i:2627 original size:170 final size:162

Alignment explanation


    Indices: 2432--2755  Score: 343
    Period size: 170  Copynumber: 2.0  Consensus size: 162

       2422 GGTAAATATG

                     **                               **                     
       2432 AAGAAAAAGACATTCATTCGCAAGAAAA-ACCTATTTATAATTTTC-CATTCCTTCAAAAACCTT
          1 AAGAAAAAGGTATTCATTCGCAAGAAAAGACC-ATTTATAA-CCTCACATTCCTTCAAAAACCTT

                            *               *            *     *        *    
       2495 ATTACTCACATT-AAATGGCTTTATAATCTCATAATTGATTTT-AGTTCAACTATT-TTATATTT
         64 ATTACTCAC-TTGAAAAGGCTTTATAATCTCAAAATTGATTTTAAATTCAAATATTATTACATTT

                   *                           
       2557 TTGGTTAGAACAGATTATAATTGAATGTCTGCCCT
        128 TTGGTTAAAACAGATTATAATTGAATGTCTGCCCT

                                        *          *        *                
       2592 AAGANNNNNNNNNNAAAAGGTATTCATTGGCAAGAAAAGTCCATTTATCACCTCACATTCCTTCA
          1 AAGA----------AAAAGGTATTCATTCGCAAGAAAAGACCATTTATAACCTCACATTCCTTCA

               *                      *                                 *    
       2657 AAAGCCTTATTACTCACTTGAAAAGGTTTTATAATCTCAAAATTGATTTTAAATTCAAATTTTAT
         56 AAAACCTTATTACTCACTTGAAAAGGCTTTATAATCTCAAAATTGATTTTAAATTCAAATATTAT

                             *                
       2722 TACATTTTTGGTTAAAATAGATTATAATTGAATG
        121 TACATTTTTGGTTAAAACAGATTATAATTGAATG

       2756 CCTACCTTGA


Statistics
Matches: 132,  Mismatches: 17, Indels: 18
        0.79            0.10        0.11

Matches are distributed among these distances:
 160    4  0.03
 169    4  0.03
 170   81  0.61
 171   11  0.08
 172   32  0.24

ACGTcount: A:0.36, C:0.15, G:0.10, T:0.37


Consensus pattern (162 bp):   
AAGAAAAAGGTATTCATTCGCAAGAAAAGACCATTTATAACCTCACATTCCTTCAAAAACCTTAT
TACTCACTTGAAAAGGCTTTATAATCTCAAAATTGATTTTAAATTCAAATATTATTACATTTTTG
GTTAAAACAGATTATAATTGAATGTCTGCCCT
Done.