Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400052.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3271.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.25

Warning! 563 characters in sequence are not A, C, G, or T


Found at i:862 original size:170 final size:169

Alignment explanation


    Indices: 544--1148  Score: 558
    Period size: 171  Copynumber: 3.6  Consensus size: 169

        534 NNNNNNNNNN

                        *   *                               *       *        
        544 ATTGAATGTCTACCTCGAGAAACGTG-AAGAAACAAG-CATTCATTGACAAGAAAACTCCATTTA
          1 ATTGAATGTCTAACTCAAGAAACGTGTAA-AAA-AAGCCATTCATTGAGAAGAAAAGTCCATTTA

            * *    *      *       *      *            *                     *
        607 GAATCATAC-ATTCTTTCAAAAAGCTTATCACTCGCTTTCAATG-GTTTTATAATCTCATAATTG
         64 TAGTCA-CCTATTCCTTCAAAAGGCTTATTACTCGC-TTCAAAGAGTTTTATAATCTCATAA-TC

             *             *                             
        670 AGTTTAAGTTGAATTCTTTTACATTTTTTGTAAAAACAGACTATA
        126 ATTTTAAGTTGAATTTTTTTACATTTTTTGT-AAAACAGACTATA

                        *     *    *  *       *           *                  
        715 ATTGAATGTCT-GCTCAAAAAACATGCAAAAAAATCCATTCATTGATAAGAAAAGTCCATTTATA
          1 ATTGAATGTCTAACTCAAGAAACGTGTAAAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTATA

                **              *               *    *            *********  
        779 GTCATTTATTCCTTCAAAAGCCTTATTAC-CTGCTTTAAAGGGTTTTATAATCNNNNNNNNNNTT
         66 GTCACCTATTCCTTCAAAAGGCTTATTACTC-GCTTCAAAGAGTTTTATAATC-TCATAATCATT

                                                       
        843 TTAAGTTGAATTTTTTTACATGTTTCTT-TAAAACAGACTATA
        129 TTAAGTTGAATTTTTTTACAT-TTT-TTGTAAAACAGACTATA

                  * *   *    *    *  *  **                        * **    *  
        885 ATTGAAAGCCTACCTCATGAAAGGTATAGGAAAAGCCATTCATTGAGAAGAAAAATTAATTTTTA
          1 ATTGAATGTCTAACTCAAGAAACGTGTAAAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTATA

                       *                           *                         
        950 GTCACCTATTCTTTCAAAAGGCTTATTACTCGCTTCAAATAGTTTTATAATCTCATAATCATTTT
         66 GTCACCTATTCCTTCAAAAGGCTTATTACTCGCTTCAAAGAGTTTTATAATCTCATAATCATTTT

                  *               *              *   
       1015 CAAGTTCAATTTTTTTACATTTGTTGTTAAAACAGACAATA
        131 -AAGTTGAATTTTTTTACATTTTTTG-TAAAACAGACTATA

                            *                     *              *           
       1056 ATTGAATGTCTAACTCGAGAAACGTGTAAAAAAAGCCACTCATTGAGAAGAAACGTCCATTTATA
          1 ATTGAATGTCTAACTCAAGAAACGTGTAAAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTATA

                  *                     
       1121 GTCACCCATTCCTTCAAAAGGCTTATTA
         66 GTCACCTATTCCTTCAAAAGGCTTATTA

       1149 NNNNNNNNNN


Statistics
Matches: 340,  Mismatches: 81, Indels: 26
        0.76            0.18        0.06

Matches are distributed among these distances:
 169   10  0.03
 170  122  0.36
 171  205  0.60
 172    3  0.01

ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35


Consensus pattern (169 bp):   
ATTGAATGTCTAACTCAAGAAACGTGTAAAAAAAGCCATTCATTGAGAAGAAAAGTCCATTTATA
GTCACCTATTCCTTCAAAAGGCTTATTACTCGCTTCAAAGAGTTTTATAATCTCATAATCATTTT
AAGTTGAATTTTTTTACATTTTTTGTAAAACAGACTATA

Done.