Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397281.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_39.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1667509
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.31
Warning! 125079 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:4120 original size:2 final size:2
Alignment explanation
Indices: 4115--4149 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
4105 ACACACATAA
*
4115 AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4150 TGTTGCTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23935 original size:16 final size:16
Alignment explanation
Indices: 23914--23944 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23904 TATTTTGTTT
*
23914 TCAGGTTTTTTCTTTC
1 TCAGGTTCTTTCTTTC
23930 TCAGGTTCTTTCTTT
1 TCAGGTTCTTTCTTT
23945 TTCTTTTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.19, G:0.13, T:0.61
Consensus pattern (16 bp):
TCAGGTTCTTTCTTTC
Found at i:26084 original size:20 final size:22
Alignment explanation
Indices: 26061--26116 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
26051 TGTTTTCTTT
* *
26061 TTTTTTCTT-CTTTTT-TTTCA
1 TTTTTTCTTAATTTTTAATTCA
26081 TTTTTTCTTAATTTTTAATTCA
1 TTTTTTCTTAATTTTTAATTCA
26103 TTTTTTC--AATTTTT
1 TTTTTTCTTAATTTTT
26117 TATTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 16 0.50
21 5 0.16
22 11 0.34
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTTCTTAATTTTTAATTCA
Found at i:26096 original size:22 final size:20
Alignment explanation
Indices: 26071--26120 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 20
26061 TTTTTTCTTC
26071 TTTTTT-TTCATTTTTTCTTAA
1 TTTTTTATTCATTTTTTC--AA
*
26092 TTTTTAATTCATTTTTTCAA
1 TTTTTTATTCATTTTTTCAA
26112 TTTTTTATT
1 TTTTTTATT
26121 TTTTTTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 10 0.38
21 5 0.19
22 11 0.42
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTATTCATTTTTTCAA
Found at i:26126 original size:20 final size:20
Alignment explanation
Indices: 26059--26126 Score: 50
Period size: 20 Copynumber: 3.4 Consensus size: 20
26049 TTTGTTTTCT
**
26059 TTTTTTTTCTTCTTTTTTTTCA
1 TTTTTTTT-TTCAATTTTTT-A
* *
26081 -TTTTTTCTT-AATTTTTAA
1 TTTTTTTTTTCAATTTTTTA
**
26099 TTCATTTTTTCAATTTTTTA
1 TTTTTTTTTTCAATTTTTTA
26119 TTTTTTTT
1 TTTTTTTT
26127 ACTTTTTTTC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
18 1 0.03
19 11 0.32
20 16 0.47
21 6 0.18
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTTTTCAATTTTTTA
Found at i:26162 original size:33 final size:33
Alignment explanation
Indices: 26107--26190 Score: 143
Period size: 33 Copynumber: 2.6 Consensus size: 33
26097 AATTCATTTT
* *
26107 TTCAATT-TTTTATTTTTTTTACTTTTTTTCAA
1 TTCAATTATTTAATTTTTATTACTTTTTTTCAA
26139 TTCAATTATTTAATTTTTATTACTTTTTTTCAA
1 TTCAATTATTTAATTTTTATTACTTTTTTTCAA
26172 TTCAATTATTTAATTTTTA
1 TTCAATTATTTAATTTTTA
26191 ATATATTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 7 0.14
33 42 0.86
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (33 bp):
TTCAATTATTTAATTTTTATTACTTTTTTTCAA
Found at i:34338 original size:29 final size:29
Alignment explanation
Indices: 34277--34338 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
34267 NNNNNNNTTC
* * *
34277 AAAAGGTACTAAGGCACCTAATAAAGTTC
1 AAAAGGTACAAAGGCACCTAACAAAGTTA
* * *
34306 AAAAGGTGCAAAGGCACCTAACCAGGTTA
1 AAAAGGTACAAAGGCACCTAACAAAGTTA
34335 AAAA
1 AAAA
34339 AATATGAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (29 bp):
AAAAGGTACAAAGGCACCTAACAAAGTTA
Found at i:50049 original size:29 final size:28
Alignment explanation
Indices: 49965--50114 Score: 112
Period size: 29 Copynumber: 5.3 Consensus size: 28
49955 GATGCTACGA
*
49965 CACCTAACAATGTTCAAAAGG--T-AGG
1 CACCTAACAAAGTTCAAAAGGTCTAAGG
* * * *
49990 CATCTTACAAAGTTCCATAAGTGT-TACGG
1 CACCTAACAAAGTT-CAAAAG-GTCTAAGG
50019 CACCTAACAAAGTTCAAAAGGTACTAAGG
1 CACCTAACAAAGTTCAAAAGGT-CTAAGG
* *
50048 CACCTAATATAA-TTCAAAAGGTGTAAAGG
1 CACCTAACA-AAGTTCAAAAGGTCT-AAGG
* * * *
50077 CACCAAATAAAGTTCAAAAGATGCAAAGG
1 CACCTAACAAAGTTCAAAAGGT-CTAAGG
50106 CACCTAACA
1 CACCTAACA
50115 GGGTTAAAAA
Statistics
Matches: 98, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
25 11 0.11
26 5 0.05
27 3 0.03
28 9 0.09
29 68 0.69
30 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (28 bp):
CACCTAACAAAGTTCAAAAGGTCTAAGG
Found at i:51659 original size:29 final size:29
Alignment explanation
Indices: 51611--51679 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
51601 NNNNNNNNNN
*
51611 AAGGCACCTAATATAATTCAAAAGGTGCA
1 AAGGCACCTAATATAATTCAAAAGGGGCA
51640 AAGGCACCTAATA-AAGTTCAAAAGGGGCA
1 AAGGCACCTAATATAA-TTCAAAAGGGGCA
51669 AAGGCACCTAA
1 AAGGCACCTAA
51680 CCGGGTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.16
Consensus pattern (29 bp):
AAGGCACCTAATATAATTCAAAAGGGGCA
Found at i:54929 original size:2 final size:2
Alignment explanation
Indices: 54922--54949 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
54912 GAGATTCATT
54922 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
54950 AAGGGGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:57734 original size:19 final size:20
Alignment explanation
Indices: 57710--57748 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
57700 ATTAGTAAGG
57710 ATTTC-TATATATGAAAATT
1 ATTTCTTATATATGAAAATT
57729 ATTTCTTTATATATGAAAAT
1 ATTTC-TTATATATGAAAAT
57749 AAATTGAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
21 13 0.72
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (20 bp):
ATTTCTTATATATGAAAATT
Found at i:88682 original size:23 final size:23
Alignment explanation
Indices: 88656--88829 Score: 155
Period size: 22 Copynumber: 7.8 Consensus size: 23
88646 TAACATGTTG
*
88656 TGAACATGGCGTGTAACAATTTT
1 TGAACATGGCATGTAACAATTTT
*
88679 TGAAC-TTGCATGTAACAATTTT
1 TGAACATGGCATGTAACAATTTT
* *
88701 TGAAC-TTGCGTGTAAC-ATTTT
1 TGAACATGGCATGTAACAATTTT
* * *
88722 TTAGCAAGGCATGTAACAA-TTT
1 TGAACATGGCATGTAACAATTTT
* *
88744 TAAAC-TTGCATGTAAC-ATTTT
1 TGAACATGGCATGTAACAATTTT
* ** *
88765 TGAACATGGCGTGTATTATTTTT
1 TGAACATGGCATGTAACAATTTT
*
88788 TAAACATGGCATGTAAC-ATTTT
1 TGAACATGGCATGTAACAATTTT
*
88810 TGAAAAGTGGCATGTAACAA
1 TGAACA-TGGCATGTAACAA
88830 CATGACTAAC
Statistics
Matches: 119, Mismatches: 25, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.01
21 24 0.20
22 59 0.50
23 34 0.29
24 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (23 bp):
TGAACATGGCATGTAACAATTTT
Found at i:88757 original size:65 final size:67
Alignment explanation
Indices: 88643--88829 Score: 200
Period size: 65 Copynumber: 2.8 Consensus size: 67
88633 AGCACAGAGT
* * * * * *
88643 GTGTAACATGTTGTGAACATGGCGTGTAACAATTTTTGAACTTGCATGTAACAATTTTTGAAC-T
1 GTGTAACATTTTTTAAACAAGGCATGTAACAA-TTTTAAACTTGCATGTAACAATTTTTGAACAT
*
88707 TGC
65 GGC
*
88710 GTGTAACATTTTTT-AGCAAGGCATGTAACAATTTTAAACTTGCATGTAAC-ATTTTTGAACATG
1 GTGTAACATTTTTTAAACAAGGCATGTAACAATTTTAAACTTGCATGTAACAATTTTTGAACATG
88773 GC
66 GC
** * * * *
88775 GTGTATTATTTTTTAAACATGGCATGTAACATTTTTGAAAAGTGGCATGTAACAA
1 GTGTAACATTTTTTAAACAAGGCATGTAACAATTTT--AAACTTGCATGTAACAA
88830 CATGACTAAC
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 10 0.10
65 33 0.33
66 32 0.32
67 12 0.12
68 13 0.13
69 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (67 bp):
GTGTAACATTTTTTAAACAAGGCATGTAACAATTTTAAACTTGCATGTAACAATTTTTGAACATG
GC
Found at i:94361 original size:21 final size:21
Alignment explanation
Indices: 94328--94371 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
94318 GATGTTGGAA
94328 ATGAAAAACGTTTAAACGAAG
1 ATGAAAAACGTTTAAACGAAG
* * *
94349 ATGAAGAAGGTTTAAATGAAG
1 ATGAAAAACGTTTAAACGAAG
94370 AT
1 AT
94372 TATTTTGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.23
Consensus pattern (21 bp):
ATGAAAAACGTTTAAACGAAG
Found at i:97125 original size:24 final size:24
Alignment explanation
Indices: 97093--97156 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
97083 GAGAGAATGT
* *
97093 AGCTACTACTGGTGCATCAAGTGA
1 AGCTGCTACTGGTGCACCAAGTGA
* *
97117 AGTTGCTACTGCTGCACCAAGTGA
1 AGCTGCTACTGGTGCACCAAGTGA
97141 AGCTGCTACTGGTGCA
1 AGCTGCTACTGGTGCA
97157 AGTGCACTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (24 bp):
AGCTGCTACTGGTGCACCAAGTGA
Found at i:101105 original size:31 final size:31
Alignment explanation
Indices: 101070--101180 Score: 168
Period size: 31 Copynumber: 3.6 Consensus size: 31
101060 AGAAAGAAAT
101070 AAATGTTGTTACACGCCATGCATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* **
101101 AAATGTTGTTACACACCACACATATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
* *
101132 AAATATTGTTACACGCCATGCACATCAAGTA
1 AAATGTTGTTACACGCCATGCATATCAAGTA
*
101163 AAATGTCGTTACACGCCA
1 AAATGTTGTTACACGCCA
101181 ATGCTAACAC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26
Consensus pattern (31 bp):
AAATGTTGTTACACGCCATGCATATCAAGTA
Found at i:101901 original size:47 final size:47
Alignment explanation
Indices: 101847--102041 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
101837 AACCTTGGCA
* *
101847 TGTCACAGATTCCCTCTATGACATGTCACAAACTCTGAACCCTGGCG
1 TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCG
* * * * * * **
101894 TGTCACAGATTCGCTCCATGGCGTGTCATAAACTCTTAATCCTAACG
1 TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCG
*
101941 TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTTCCG
1 TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCG
* * ** * *
101988 TGTCATAGATTCCCTCCATGGCATGTTGCAAACTCTTAACCTTGCCG
1 TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCG
102035 TGTCACA
1 TGTCACA
102042 ACTGTGTCAC
Statistics
Matches: 123, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (47 bp):
TGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCG
Found at i:102037 original size:94 final size:94
Alignment explanation
Indices: 101831--102041 Score: 280
Period size: 94 Copynumber: 2.2 Consensus size: 94
101821 CATCTGACAC
* * * * *
101831 ACTCTAAACCTTGGCATGTCACAGATTCCCTCTATGACATGTCACAAACTCTGAACCCTGGCGTG
1 ACTCTTAACCTTGACGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCGTG
* * *
101896 TCACAGATTCGCTCCATGGCGTGTCATAA
66 TCACAGATTCCCTCCATGGCATGTCACAA
* *
101925 ACTCTTAATCC-TAACGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTTCCGT
1 ACTCTTAA-CCTTGACGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCGT
* **
101989 GTCATAGATTCCCTCCATGGCATGTTGCAA
65 GTCACAGATTCCCTCCATGGCATGTCACAA
*
102019 ACTCTTAACCTTGCCGTGTCACA
1 ACTCTTAACCTTGACGTGTCACA
102042 ACTGTGTCAC
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
93 2 0.02
94 96 0.96
95 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (94 bp):
ACTCTTAACCTTGACGTGTCACAGATTCCCTCCATGACATGTCACAAACTCTGAACCCTGCCGTG
TCACAGATTCCCTCCATGGCATGTCACAA
Found at i:102144 original size:23 final size:22
Alignment explanation
Indices: 102118--102176 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
102108 TGTCATATCC
* *
102118 CATATTCCCTTCAAGTCGTGTCA
1 CATATTCCCTCCAACT-GTGTCA
* *
102141 CATATTCTCATCCTACTGTGTCA
1 CATATTC-CCTCCAACTGTGTCA
102164 CATATTCCCTCCA
1 CATATTCCCTCCA
102177 TGGCATCTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
22 4 0.14
23 20 0.69
24 5 0.17
ACGTcount: A:0.22, C:0.34, G:0.08, T:0.36
Consensus pattern (22 bp):
CATATTCCCTCCAACTGTGTCA
Found at i:114198 original size:23 final size:22
Alignment explanation
Indices: 114154--114198 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
114144 TGTAAACACA
* * *
114154 GCATGTAACTTTTTTCATCATG
1 GCATGTAAATTTTTTAAACATG
114176 GCATGTAATATTTTTTAAACATG
1 GCATGTAA-ATTTTTTAAACATG
114199 ACGTGTAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (22 bp):
GCATGTAAATTTTTTAAACATG
Found at i:114924 original size:21 final size:21
Alignment explanation
Indices: 114899--114939 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
114889 ACATTGCGAC
114899 GATGCT-ATAGGACAACACTAT
1 GATGCTGA-AGGACAACACTAT
114920 GATGCTGAAGGACAACACTA
1 GATGCTGAAGGACAACACTA
114940 CATATGATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (21 bp):
GATGCTGAAGGACAACACTAT
Found at i:124877 original size:142 final size:142
Alignment explanation
Indices: 124705--125860 Score: 777
Period size: 142 Copynumber: 8.2 Consensus size: 142
124695 ACAAGCCACA
* *
124705 CTTGTTAAATGTCATTGACATCTTGTGGTGACATGTTGAGTCG-T-TACGATATTACGA-GGTGA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTA-G-TATTACGAGGGTGA
* * * *
124767 CACAGAGTTCTTGTTAGATGTCATTGATATCTTATGGTAACACGTTGGGTCGTTGCAGTATTATG
64 CACAGGGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATG
*
124832 AGGTGACACAGAGTT
129 AGGTGACACACA-TT
* * * * * * *
124847 CTTGGTAGTTGTCGTTGACATCTTGTGGTGACACGCTGAGTTGTTGCAGTATT-CTAGGGTGACA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
* * * * * *
124911 TAGGGTTCTTGTTACATGTCGTTGACATCTTGTGGTAACACGTTGAGTCATTGTAATATTAT-AG
66 CAGGGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATGAG
*
124975 GATGACATGC-CATG
131 G-TGACA--CACATT
* * * *
124989 CATGTTAGATGTCATTAACATCTTGTGGTGACACGTTGAGTTGTTGTAGTATTA-TAGGGTGACA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
* * * * * *
125053 CAGGGTTCTTCTTAGATGT-AGTTGACATCTTGTGGTGACACGCTGAGTCGTTGCAGTATTATGG
66 CAGGGTTCTTGTTAGATGTCA-TTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATGA
*
125117 GGTGACACACCACAT
130 GGTGACACA-CA-TT
* * * * * *
125132 -TTGTTAAAT-ACAATTGATATCTTATGGTGACATGTTGAGTCGTTGTAGTATTA--TGGGTGAC
1 CTTGTTAGATGTC-ATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGAC
* * * * *
125193 ATAGGGCTCTTGTTAGATGTCATTGACATCTTATGGTGACACGTTTAGTCATTGCAGTATTATGG
65 ACAGGGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATGA
* **
125258 GGTGACACGCCACA
130 GGTGACAC-ACATT
* * * * * * *
125272 CTTGTTAGATGCCGA-TGGCATCTTGTGATAACACGCTGAGTCGTTGTAGAATTATGA-GGTGAC
1 CTTGTTAGATGTC-ATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGAC
* * * * * *
125335 A-TGAGGCTCTTGTTAGATGTCATTGACATCTTGTGGTCACATGCTT-AGTCATTGCAATATTAT
65 ACAG-GGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACG-TTGAGTCATTGCAGTATTAT
* * *
125398 GGGGTGGCATGC-CATG
128 GAGGTGACA--CACATT
* * * * * * *
125414 CTTGTTAGATGTCATTAACATCTTATGGTGACATGTTGAGTCATTGCAGTACTA--TGGGTGACA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
* * * * * * * *
125477 -TGTGGTTCTTGTTAAATGTCGTTGACATCTTATAGTGACACGCTT-AGTCCTTGCAATGTTATG
66 CAG-GGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACG-TTGAGTCATTGCAGTATTATG
* * *
125540 GGGTGACACGCCATG
129 AGGTGACAC-ACATT
* * * * * * *
125555 CTTGTTAGATGTCATTGACATCTTGTGGTGACACATTAAGTTGTTGCAGTATTATG-GGATGACT
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
* ** * * * * *
125619 CTGGGTT-TTGGTTAGATGTTGTTAACATCTTGTGGTGACTCGCTT-AGTCATTGCAATATTAT-
66 CAGGGTTCTT-GTTAGATGTCATTGACATCTTATGGTAACACG-TTGAGTCATTGCAGTATTATG
*
125681 AGAGTGACACGCCA--
129 AG-GTGACAC-ACATT
* * * * * * *
125695 C--GCT---TG---TT-ACATCTTGCGGTGACACGCTAAGTTGTTGCAGTATTATG-GGGTGACA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
* * ***** * *
125750 C-GAGGTTCTTTTTAGATGTCGTTGACATCTCGCAATGACACGTTGAGTCATTTCAGTATTATGA
66 CAG-GGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATGA
**
125814 GGTGACACAGGGTT
130 GGTGACACA-CATT
**
125828 CTTGTTAGATGTTGTTGACATCTTGTGGTGACA
1 CTTGTTAGATGTCATTGACATCTTGTGGTGACA
125861 AACTGCATCA
Statistics
Matches: 823, Mismatches: 143, Indels: 96
0.77 0.13 0.09
Matches are distributed among these distances:
130 3 0.00
131 93 0.11
132 6 0.01
133 1 0.00
135 4 0.00
138 4 0.00
139 1 0.00
140 2 0.00
141 242 0.29
142 455 0.55
143 9 0.01
144 3 0.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (142 bp):
CTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGTAGTATTACGAGGGTGACA
CAGGGTTCTTGTTAGATGTCATTGACATCTTATGGTAACACGTTGAGTCATTGCAGTATTATGAG
GTGACACACATT
Found at i:125320 original size:283 final size:283
Alignment explanation
Indices: 124673--125695 Score: 1042
Period size: 283 Copynumber: 3.6 Consensus size: 283
124663 GACATGCCAC
* * * * *
124673 GTCATTACAATAATGTGGGGTGACAAGCCACACTTGTTAAATGTCATTGACATCTTGTGGTGACA
1 GTCATTGCAATATTATGGGGTGACACGCCACACTTGTTAGATGTCATTGACATCTTGTGGTGACA
* * * * *
124738 TGTTGAGTCG-T-TACGATATTACGAGGTGACACAGAGTTCTTGTTAGATGTCATTGATATCTTA
66 CGTTGAGTCGTTGTA-G-TATTATGAGGTGACACAGGGTTCTTGTTAGATGTCATTGACATCTTG
* * * * * * * ** * * *
124801 TGGTAACACGTTGGGTCGTTGCAGTATTATGAGGTGACACA-GAGTTCTTGGTAGTTGTCGTTGA
129 TGGTGACACGCTGAGTCATTGCAATATTATGGGGTGACACACCACAT-TTGTTAGATGTCATTGA
* * * * * *
124865 CATCTTGTGGTGACACGCTGAGTTGTTGCAGTATTCTAGGGTGACATAGGGTTCTTGTTACATGT
193 CATCTTATGGTGACATGTTGAGTCGTTGCAGTATTAT-GGGTGACATAGGGTTCTTGTTAAATGT
* * *
124930 CGTTGACATCTTGTGGTAACACGTTGA
257 CGTTGACATCTTATGGTGACACGTTTA
* * * * ** * *
124957 GTCATTGTAATATTATAGGATGACATGCCATGCATGTTAGATGTCATTAACATCTTGTGGTGACA
1 GTCATTGCAATATTATGGGGTGACACGCCACACTTGTTAGATGTCATTGACATCTTGTGGTGACA
* *
125022 CGTTGAGTTGTTGTAGTATTAT-AGGGTGACACAGGGTTCTTCTTAGATGT-AGTTGACATCTTG
66 CGTTGAGTCGTTGTAGTATTATGA-GGTGACACAGGGTTCTTGTTAGATGTCA-TTGACATCTTG
* * * *
125085 TGGTGACACGCTGAGTCGTTGCAGTATTATGGGGTGACACACCACATTTGTTAAAT-ACAATTGA
129 TGGTGACACGCTGAGTCATTGCAATATTATGGGGTGACACACCACATTTGTTAGATGTC-ATTGA
* * * *
125149 TATCTTATGGTGACATGTTGAGTCGTTGTAGTATTATGGGTGACATAGGGCTCTTGTTAGATGTC
193 CATCTTATGGTGACATGTTGAGTCGTTGCAGTATTATGGGTGACATAGGGTTCTTGTTAAATGTC
*
125214 ATTGACATCTTATGGTGACACGTTTA
258 GTTGACATCTTATGGTGACACGTTTA
* * * * *
125240 GTCATTGCAGTATTATGGGGTGACACGCCACACTTGTTAGATGCCGA-TGGCATCTTGTGATAAC
1 GTCATTGCAATATTATGGGGTGACACGCCACACTTGTTAGATGTC-ATTGACATCTTGTGGTGAC
* * * *
125304 ACGCTGAGTCGTTGTAGAATTATGAGGTGACA-TGAGGCTCTTGTTAGATGTCATTGACATCTTG
65 ACGTTGAGTCGTTGTAGTATTATGAGGTGACACAG-GGTTCTTGTTAGATGTCATTGACATCTTG
* * * * ** *** *
125368 TGGTCACATGCTTAGTCATTGCAATATTATGGGGTGGCATGCCATGCTTGTTAGATGTCATTAAC
129 TGGTGACACGCTGAGTCATTGCAATATTATGGGGTGACACACCACATTTGTTAGATGTCATTGAC
* *
125433 ATCTTATGGTGACATGTTGAGTCATTGCAGTACTATGGGTGACAT-GTGGTTCTTGTTAAATGTC
194 ATCTTATGGTGACATGTTGAGTCGTTGCAGTATTATGGGTGACATAG-GGTTCTTGTTAAATGTC
* *
125497 GTTGACATCTTATAGTGACACGCTTA
258 GTTGACATCTTATGGTGACACGTTTA
* * **
125523 GTCCTTGCAATGTTATGGGGTGACACGCCATGCTTGTTAGATGTCATTGACATCTTGTGGTGACA
1 GTCATTGCAATATTATGGGGTGACACGCCACACTTGTTAGATGTCATTGACATCTTGTGGTGACA
* * * * * * ** *
125588 CATTAAGTTGTTGCAGTATTATG-GGATGACTCTGGGTT-TTGGTTAGATGTTGTTAACATCTTG
66 CGTTGAGTCGTTGTAGTATTATGAGG-TGACACAGGGTTCTT-GTTAGATGTCATTGACATCTTG
* * * * *
125651 TGGTGACTCGCTTAGTCATTGCAATATTATAGAGTGACACGCCAC
129 TGGTGACACGCTGAGTCATTGCAATATTATGGGGTGACACACCAC
125696 GCTTGTTACA
Statistics
Matches: 609, Mismatches: 114, Indels: 33
0.81 0.15 0.04
Matches are distributed among these distances:
282 7 0.01
283 414 0.68
284 182 0.30
285 4 0.01
286 2 0.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.35
Consensus pattern (283 bp):
GTCATTGCAATATTATGGGGTGACACGCCACACTTGTTAGATGTCATTGACATCTTGTGGTGACA
CGTTGAGTCGTTGTAGTATTATGAGGTGACACAGGGTTCTTGTTAGATGTCATTGACATCTTGTG
GTGACACGCTGAGTCATTGCAATATTATGGGGTGACACACCACATTTGTTAGATGTCATTGACAT
CTTATGGTGACATGTTGAGTCGTTGCAGTATTATGGGTGACATAGGGTTCTTGTTAAATGTCGTT
GACATCTTATGGTGACACGTTTA
Found at i:125611 original size:71 final size:71
Alignment explanation
Indices: 124688--125703 Score: 731
Period size: 71 Copynumber: 14.3 Consensus size: 71
124678 TACAATAATG
* ** * * *
124688 TGGGGTGACAAGCCACACTTGTTAAATGTCATTGACATCTTGTGGTGACATGTTGAGTCGTTAC-
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGCA
124752 GATATTA
66 G-TATTA
* * * * * *
124759 CGAGGTGACACAG--AGTTCTTGTTAGATGTCATTGATATCTTATGGTAACACGTTGGGTCGTTG
1 TGGGGTGACAC-GCCA-TTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTG
124822 CAGTATTA
64 CAGTATTA
* * * * * *
124830 TGAGGTGACACAG--AGTTCTTGGTAGTTGTCGTTGACATCTTGTGGTGACACGCTGAGTTGTTG
1 TGGGGTGACAC-GCCA-TTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTG
*
124893 CAGTATTC
64 CAGTATTA
* * ** * * * * *
124901 TAGGGTGACATAG-GGTTCTTGTTACATGTCGTTGACATCTTGTGGTAACACGTTGAGTCATTGT
1 TGGGGTGACA-CGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGC
*
124965 AATATTA
65 AGTATTA
* * * * * * * *
124972 TAGGATGACATGCCATGCATGTTAGATGTCATTAACATCTTGTGGTGACACGTTGAGTTGTTGTA
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGCA
125037 GTATTA
66 GTATTA
* ** * *
125043 TAGGGTGACACAG-GGTTCTTCTTAGATGT-AGTTGACATCTTGTGGTGACACGCTGAGTCGTTG
1 TGGGGTGACAC-GCCATTCTTGTTAGATGTCA-TTGACATCTTGTGGTGACACGTTGAGTCGTTG
125106 CAGTATTA
64 CAGTATTA
* * * * * * *
125114 TGGGGTGACACACCACAT-TTGTTAAAT-ACAATTGATATCTTATGGTGACATGTTGAGTCGTTG
1 TGGGGTGACACGCCA-TTCTTGTTAGATGTC-ATTGACATCTTGTGGTGACACGTTGAGTCGTTG
*
125177 TAGTATTA
64 CAGTATTA
* * * * *
125185 T-GGGTGACATAGGGC--TCTTGTTAGATGTCATTGACATCTTATGGTGACACGTTTAGTCATTG
1 TGGGGTGAC--ACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTG
125247 CAGTATTA
64 CAGTATTA
** * * * * * *
125255 TGGGGTGACACGCCACACTTGTTAGATGCCGA-TGGCATCTTGTGATAACACGCTGAGTCGTTGT
1 TGGGGTGACACGCCATTCTTGTTAGATGTC-ATTGACATCTTGTGGTGACACGTTGAGTCGTTGC
*
125319 AGAATTA
65 AGTATTA
* * **** * * *
125326 TGAGGTGACATGAGGCTCTTGTTAGATGTCATTGACATCTTGTGGTCACATGCTT-AGTCATTGC
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACG-TTGAGTCGTTGC
*
125390 AATATTA
65 AGTATTA
* * * * * * *
125397 TGGGGTGGCATGCCATGCTTGTTAGATGTCATTAACATCTTATGGTGACATGTTGAGTCATTGCA
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGCA
*
125462 GTACTA
66 GTATTA
* *** * * * * *
125468 T-GGGTGACATGTGGTTCTTGTTAAATGTCGTTGACATCTTATAGTGACACGCTT-AGTCCTTGC
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACG-TTGAGTCGTTGC
* *
125531 AATGTTA
65 AGTATTA
* * * *
125538 TGGGGTGACACGCCATGCTTGTTAGATGTCATTGACATCTTGTGGTGACACATTAAGTTGTTGCA
1 TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGCA
125603 GTATTA
66 GTATTA
* * ** ** * * *
125609 TGGGATGACTCTG-GGTT-TTGGTTAGATGTTGTTAACATCTTGTGGTGACTCGCTT-AGTCATT
1 TGGGGTGACAC-GCCATTCTT-GTTAGATGTCATTGACATCTTGTGGTGACACG-TTGAGTCGTT
*
125671 GCAATATTA
63 GCAGTATTA
* * **
125680 TAGAGTGACACGCCACGCTTGTTA
1 TGGGGTGACACGCCATTCTTGTTA
125704 CATCTTGCGG
Statistics
Matches: 740, Mismatches: 174, Indels: 62
0.76 0.18 0.06
Matches are distributed among these distances:
69 4 0.01
70 116 0.16
71 606 0.82
72 14 0.02
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (71 bp):
TGGGGTGACACGCCATTCTTGTTAGATGTCATTGACATCTTGTGGTGACACGTTGAGTCGTTGCA
GTATTA
Found at i:125733 original size:60 final size:61
Alignment explanation
Indices: 125637--125751 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 61
125627 TGGTTAGATG
* * *
125637 TTGTTAACATCTTGTGGTGACTCGCTTAGTCATTGCAATATTATAGAGTGACACGCCACGC
1 TTGTTAACATCTTGCGGTGACACGCTAAGTCATTGCAATATTATAGAGTGACACGCCACGC
** * * *
125698 TTGTT-ACATCTTGCGGTGACACGCTAAGTTGTTGCAGTATTATGGGGTGACACG
1 TTGTTAACATCTTGCGGTGACACGCTAAGTCATTGCAATATTATAGAGTGACACG
125752 AGGTTCTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
60 41 0.89
61 5 0.11
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (61 bp):
TTGTTAACATCTTGCGGTGACACGCTAAGTCATTGCAATATTATAGAGTGACACGCCACGC
Found at i:125810 original size:131 final size:131
Alignment explanation
Indices: 125572--125821 Score: 301
Period size: 131 Copynumber: 1.9 Consensus size: 131
125562 GATGTCATTG
* * *
125572 ACATCTTGTGGTGACACATTAAGTTGTTGCAGTATTATGGGATGACTCTGGGTTTTGGTTAGATG
1 ACATCTTGCGGTGACACACTAAGTTGTTGCAGTATTATGGGATGACACTGGGTTTTGGTTAGATG
* * *** *
125637 TTGTTAACATCTTGTGGTGACTCGCTTAGTCATTGCAATATTAT-AGAGTGACACGCCACGCTTG
66 TCGTTAACATCTCGCAATGACACGCTTAGTCATTGCAATATTATGAG-GTGACACGCCACGCTTG
125701 TT
130 TT
* * *
125703 ACATCTTGCGGTGACACGCTAAGTTGTTGCAGTATTATGGGGTGACAC-GAGGTTCTT-TTTAGA
1 ACATCTTGCGGTGACACACTAAGTTGTTGCAGTATTATGGGATGACACTG-GGTT-TTGGTTAGA
* * *
125766 TGTCGTTGACATCTCGCAATGACACG-TTGAGTCATTTCAGTATTATGAGGTGACAC
64 TGTCGTTAACATCTCGCAATGACACGCTT-AGTCATTGCAATATTATGAGGTGACAC
125822 AGGGTTCTTG
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
130 3 0.03
131 93 0.93
132 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (131 bp):
ACATCTTGCGGTGACACACTAAGTTGTTGCAGTATTATGGGATGACACTGGGTTTTGGTTAGATG
TCGTTAACATCTCGCAATGACACGCTTAGTCATTGCAATATTATGAGGTGACACGCCACGCTTGT
T
Found at i:125860 original size:71 final size:71
Alignment explanation
Indices: 125698--125891 Score: 223
Period size: 71 Copynumber: 2.7 Consensus size: 71
125688 CACGCCACGC
* ** *
125698 TTGTT-ACATCTTGCGGTGACACGCTAAGTTGTTGCAGTATTATGGGGTGACACGAGGTTCTTTT
1 TTGTTGACATCTTGCGGTGACACGCTGAGTCATTGCAGTATTATGGGGTGACACGAGGTTCTTGT
125762 TAGATG
66 TAGATG
* * ** * * *
125768 TCGTTGACATCTCGCAATGACACGTTGAGTCATTTCAGTATTATGAGGTGACAC-AGGGTTCTTG
1 TTGTTGACATCTTGCGGTGACACGCTGAGTCATTGCAGTATTATGGGGTGACACGA-GGTTCTTG
125832 TTAGATG
65 TTAGATG
* **
125839 TTGTTGACATCTTGTGGTGACAAACTGCA-TCATTGCAGTATTATGGGGTGACA
1 TTGTTGACATCTTGCGGTGACACGCTG-AGTCATTGCAGTATTATGGGGTGACA
125892 TGCCATGCTC
Statistics
Matches: 100, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
70 5 0.05
71 94 0.94
72 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (71 bp):
TTGTTGACATCTTGCGGTGACACGCTGAGTCATTGCAGTATTATGGGGTGACACGAGGTTCTTGT
TAGATG
Found at i:125874 original size:202 final size:202
Alignment explanation
Indices: 125511--125896 Score: 445
Period size: 202 Copynumber: 1.9 Consensus size: 202
125501 ACATCTTATA
* * *
125511 GTGACACGCTTAGTCCTTGCAATGTTATGGGGTGACACGCCATGCTTGTTAGATGTCATTGACAT
1 GTGACACGCTAAGTCCTTGCAATATTATGGGGTGACACGACATGCTTGTTAGATGTCATTGACAT
* *** ** * *
125576 CTTGTGGTGACACATTAAGTTGTTGCAGTATTATGGGATGACTCTGGGTTTTGGTTAGATGTTGT
66 CTCGCAATGACACATTAAGTCATTGCAGTATTATGGGATGACACAGGGTTTTGGTTAGATGTTGT
*** *
125641 TAACATCTTGTGGTGACTCGCTTAGTCATTGCAATATTATAGAGTGACACGCCACGCTTGTTACA
131 TAACATCTTGTGGTGACAAACTCAGTCATTGCAATATTATAGAGTGACACGCCACGCTTGTTACA
125706 TCTTGCG
196 TCTTGCG
** * ** * * *
125713 GTGACACGCTAAGTTGTTGCAGTATTATGGGGTGACACGAGGTTCTTTTTAGATGTCGTTGACAT
1 GTGACACGCTAAGTCCTTGCAATATTATGGGGTGACACGACATGCTTGTTAGATGTCATTGACAT
* * *
125778 CTCGCAATGACACGTTGAGTCATTTCAGTATTATGAGG-TGACACAGGGTTCTT-GTTAGATGTT
66 CTCGCAATGACACATTAAGTCATTGCAGTATTATG-GGATGACACAGGGTT-TTGGTTAGATGTT
* * * * *
125841 GTTGACATCTTGTGGTGACAAACTGCA-TCATTGCAGTATTATGGGGTGACATGCCA
129 GTTAACATCTTGTGGTGACAAACT-CAGTCATTGCAATATTATAGAGTGACACGCCA
125897 TGCTCCAATT
Statistics
Matches: 150, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
202 145 0.97
203 5 0.03
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (202 bp):
GTGACACGCTAAGTCCTTGCAATATTATGGGGTGACACGACATGCTTGTTAGATGTCATTGACAT
CTCGCAATGACACATTAAGTCATTGCAGTATTATGGGATGACACAGGGTTTTGGTTAGATGTTGT
TAACATCTTGTGGTGACAAACTCAGTCATTGCAATATTATAGAGTGACACGCCACGCTTGTTACA
TCTTGCG
Found at i:129883 original size:31 final size:31
Alignment explanation
Indices: 129848--129988 Score: 156
Period size: 31 Copynumber: 4.4 Consensus size: 31
129838 AGAAAGAAAT
129848 AAATGTTGTTACATGCTATGCATACCAAGTA
1 AAATGTTGTTACATGCTATGCATACCAAGTA
* *
129879 AAATGTTGTTACATCCTATGCATACTAAGTAA
1 AAATGTTGTTACATGCTATGCATACCAAGT-A
* * * * *
129911 AATATTTTTTTTTAGACGCTATGCATACTAAGTA
1 AA-A--TGTTGTTACATGCTATGCATACCAAGTA
* * *
129945 AAATGTTTTTACATGCTAAGCATACCAAGTC
1 AAATGTTGTTACATGCTATGCATACCAAGTA
129976 AAATGTTGTTACA
1 AAATGTTGTTACA
129989 CATTGATGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
31 62 0.67
32 3 0.03
33 2 0.02
34 3 0.03
35 22 0.24
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.36
Consensus pattern (31 bp):
AAATGTTGTTACATGCTATGCATACCAAGTA
Found at i:130674 original size:23 final size:23
Alignment explanation
Indices: 130644--130708 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
130634 ATTTTTCTAT
130644 TTCAAGCCATGGCATGTCACAAA
1 TTCAAGCCATGGCATGTCACAAA
* *
130667 TTCAAGCCATGGCGTGTCACATA
1 TTCAAGCCATGGCATGTCACAAA
*
130690 TTCAAGCCATGCCATGTCA
1 TTCAAGCCATGGCATGTCA
130709 TAATATCTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (23 bp):
TTCAAGCCATGGCATGTCACAAA
Found at i:130723 original size:46 final size:46
Alignment explanation
Indices: 130644--130732 Score: 110
Period size: 46 Copynumber: 1.9 Consensus size: 46
130634 ATTTTTCTAT
* * *
130644 TTCAAGCCATGGCATGTCACAAATTCAAGCCATGGCGTGTCACATA
1 TTCAAGCCATGCCATGTCACAAATTCAAGCCATGCCGAGTCACATA
*
130690 TTCAAGCCATGCCATGTCATAATATCTC-A-CCATGCCGAGTCAC
1 TTCAAGCCATGCCATGTCACAA-AT-TCAAGCCATGCCGAGTCAC
130733 GATGTTGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
46 32 0.86
47 3 0.08
48 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (46 bp):
TTCAAGCCATGCCATGTCACAAATTCAAGCCATGCCGAGTCACATA
Found at i:130766 original size:23 final size:24
Alignment explanation
Indices: 130740--130838 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 24
130730 CACGATGTTG
*
130740 TGTCACACTA-TCTCACCATGTCA
1 TGTCACACGATTCTCACCATGTCA
* *
130763 TGTCATA-GATTCTCACCATGCCA
1 TGTCACACGATTCTCACCATGTCA
* * * * *
130786 TCTAACACGCTT-TCAACATGTCG
1 TGTCACACGATTCTCACCATGTCA
* *
130809 TGTCACAC-ATTCCCACCATGGCA
1 TGTCACACGATTCTCACCATGTCA
130832 TGTCACA
1 TGTCACA
130839 AACTCTAAAC
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
22 3 0.05
23 50 0.89
24 3 0.05
ACGTcount: A:0.26, C:0.33, G:0.12, T:0.28
Consensus pattern (24 bp):
TGTCACACGATTCTCACCATGTCA
Found at i:130895 original size:22 final size:23
Alignment explanation
Indices: 130863--130929 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 23
130853 TAATGTCACA
* *
130863 GCTGTGTCACATATTCTCACCAT
1 GCTGTATCACACATTCTCACCAT
**
130886 GCTGT-TCACACATTCTCAAAAT
1 GCTGTATCACACATTCTCACCAT
*
130908 G-TTTATCACACATTCTCACCAT
1 GCTGTATCACACATTCTCACCAT
130930 ACCGTGTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 2 0.05
22 30 0.81
23 5 0.14
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (23 bp):
GCTGTATCACACATTCTCACCAT
Found at i:130973 original size:23 final size:23
Alignment explanation
Indices: 130947--131070 Score: 149
Period size: 23 Copynumber: 5.4 Consensus size: 23
130937 CACAGCTGTG
* *
130947 TCACATATGCTCACCATGTCGTT
1 TCACATATTCTCACCATGTCGTC
* *
130970 TCACATATTCTCACCATGGCGTG
1 TCACATATTCTCACCATGTCGTC
* *
130993 TCACATATTCACACCATGTCATC
1 TCACATATTCTCACCATGTCGTC
* * *
131016 TCACCTATTCTCACCATGGCGTG
1 TCACATATTCTCACCATGTCGTC
* *
131039 TCACATATTCACACCATGTCATC
1 TCACATATTCTCACCATGTCGTC
131062 TCACATATT
1 TCACATATT
131071 GCTTCTAAGT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 84 1.00
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.32
Consensus pattern (23 bp):
TCACATATTCTCACCATGTCGTC
Found at i:131011 original size:46 final size:46
Alignment explanation
Indices: 130944--131070 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
130934 TGTCACAGCT
* * * *
130944 GTGTCACATATGCTCACCATGTCGTTTCACATATTCTCACCATGGC
1 GTGTCACATATTCACACCATGTCATCTCACATATTCTCACCATGGC
*
130990 GTGTCACATATTCACACCATGTCATCTCACCTATTCTCACCATGGC
1 GTGTCACATATTCACACCATGTCATCTCACATATTCTCACCATGGC
131036 GTGTCACATATTCACACCATGTCATCTCACATATT
1 GTGTCACATATTCACACCATGTCATCTCACATATT
131071 GCTTCTAAGT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.32
Consensus pattern (46 bp):
GTGTCACATATTCACACCATGTCATCTCACATATTCTCACCATGGC
Found at i:131190 original size:23 final size:23
Alignment explanation
Indices: 131161--131229 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
131151 CTGTGTCACA
* *
131161 GTCGTGTCACATATTCTCACCAT
1 GTCGTGTCACACATTCCCACCAT
131184 GAT-GTGTCACACATTCCCACCAT
1 G-TCGTGTCACACATTCCCACCAT
*
131207 GTCATGTCACACATTCCCACCAT
1 GTCGTGTCACACATTCCCACCAT
131230 AACGTTTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
22 1 0.02
23 39 0.95
24 1 0.02
ACGTcount: A:0.25, C:0.35, G:0.12, T:0.29
Consensus pattern (23 bp):
GTCGTGTCACACATTCCCACCAT
Found at i:131239 original size:23 final size:23
Alignment explanation
Indices: 131163--131240 Score: 93
Period size: 23 Copynumber: 3.4 Consensus size: 23
131153 GTGTCACAGT
* *
131163 CGTGTCACATATTCTCACCATGA
1 CGTGTCACACATTCCCACCATGA
* *
131186 TGTGTCACACATTCCCACCATGT
1 CGTGTCACACATTCCCACCATGA
* *
131209 CATGTCACACATTCCCACCATAA
1 CGTGTCACACATTCCCACCATGA
*
131232 CGTTTCACA
1 CGTGTCACA
131241 AACTTTAAAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.27, C:0.35, G:0.10, T:0.28
Consensus pattern (23 bp):
CGTGTCACACATTCCCACCATGA
Found at i:132580 original size:41 final size:41
Alignment explanation
Indices: 132523--132606 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
132513 AGTGTGTGAC
132523 AATTCCTTTAGGAGGGTCTTAAAATAGTTCCCACAAGCACA
1 AATTCCTTTAGGAGGGTCTTAAAATAGTTCCCACAAGCACA
*
132564 AATTCCTTTAGGAGGGTCTTAAAATGGTTCCCACAAGCACA
1 AATTCCTTTAGGAGGGTCTTAAAATAGTTCCCACAAGCACA
132605 AA
1 AA
132607 CTTTACTACT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (41 bp):
AATTCCTTTAGGAGGGTCTTAAAATAGTTCCCACAAGCACA
Found at i:138796 original size:31 final size:31
Alignment explanation
Indices: 138758--139019 Score: 301
Period size: 31 Copynumber: 8.5 Consensus size: 31
138748 AATATGGCAC
*
138758 AAATGTGGTTACACGCCATGCATAACAAGTA
1 AAATGTGGTGACACGCCATGCATAACAAGTA
* *
138789 AAATGTGGTAACACGTCATGCATAACAAGTA
1 AAATGTGGTGACACGCCATGCATAACAAGTA
* *
138820 AAAGGTGGTGACATGCCATGCATAACAAGTA
1 AAATGTGGTGACACGCCATGCATAACAAGTA
*
138851 AAATGTGGTGACACGTCATGCATAACAAGTA
1 AAATGTGGTGACACGCCATGCATAACAAGTA
* * * *
138882 TAATGTCGTGACACGCCATGCATATCAAGTC
1 AAATGTGGTGACACGCCATGCATAACAAGTA
* * * *
138913 AAATATTGTGACACGCCATGCATATCAAGTC
1 AAATGTGGTGACACGCCATGCATAACAAGTA
* * * * *
138944 AAATATTGTGACACGCCATGCATATCAACTC
1 AAATGTGGTGACACGCCATGCATAACAAGTA
** * *
138975 AAATGTCTTGACACGCCATGCATATCAAGTC
1 AAATGTGGTGACACGCCATGCATAACAAGTA
*
139006 AAATGTCG-GACACG
1 AAATGTGGTGACACG
139020 ATATGCAAAC
Statistics
Matches: 208, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
30 6 0.03
31 202 0.97
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (31 bp):
AAATGTGGTGACACGCCATGCATAACAAGTA
Found at i:139697 original size:47 final size:47
Alignment explanation
Indices: 139618--139911 Score: 244
Period size: 47 Copynumber: 6.3 Consensus size: 47
139608 CCTTGAATGC
** * *
139618 TGGCGTGTCACCAACTCCGAACACT-AGTGTGTCACAGATTCCCTCCA
1 TGGCGTGTCACCAACTTTGAATACTGA-CGTGTCACAGATTCCCTCCA
* *
139665 TGGTGTGTCACCAACTTTGAATACTGACGTGTCACAGATTCCCTCTA
1 TGGCGTGTCACCAACTTTGAATACTGACGTGTCACAGATTCCCTCCA
* * * ** *
139712 TGGCATGTCACAAACCTTGAACCCT-ATCGTGTCACAGATTCCCTTCA
1 TGGCGTGTCACCAACTTTGAATACTGA-CGTGTCACAGATTCCCTCCA
* ** * * * *
139759 TGGCCTGTCATAAACTCTGAATACTGCCATGTCACAGATTCCATCCA
1 TGGCGTGTCACCAACTTTGAATACTGACGTGTCACAGATTCCCTCCA
* * *
139806 TGTCGTGTCA--AACTCTGAACT-CTGACGTGTCATAGATTCCCTCCA
1 TGGCGTGTCACCAACTTTGAA-TACTGACGTGTCACAGATTCCCTCCA
* * * *
139851 TGCCATGTCA-CAAATTCTGAACTA-TGGA-GTGTCAAAGATTCCCTCCA
1 TGGCGTGTCACCAACTT-TGAA-TACT-GACGTGTCACAGATTCCCTCCA
139898 TGGCGTGTCACCAA
1 TGGCGTGTCACCAA
139912 ACTCTAAACC
Statistics
Matches: 201, Mismatches: 37, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
45 37 0.18
46 5 0.02
47 153 0.76
48 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
TGGCGTGTCACCAACTTTGAATACTGACGTGTCACAGATTCCCTCCA
Found at i:139870 original size:92 final size:90
Alignment explanation
Indices: 139646--139934 Score: 253
Period size: 92 Copynumber: 3.1 Consensus size: 90
139636 GAACACTAGT
** * *
139646 GTGTCACAGATTCCCTCCATGGTGTGTCACCAACTT-TGAATACTGACGTGTCACAGATTCCCTC
1 GTGTCACAGATTCCCTCCAT-GCCTGTCA-CAAATTCTGAATACTG-CATGTCACAGATTCCCTC
* *
139710 TATGGCATGTCACAAACCTTGAACCCTATC
63 CATGGCGTGT--CAAACCTTGAACCCTATC
* * * *
139740 GTGTCACAGATTCCCTTCATGGCCTGTCATAAACTCTGAATACTGCCATGTCACAGATTCCATCC
1 GTGTCACAGATTCCCTCCAT-GCCTGTCACAAATTCTGAATACTG-CATGTCACAGATTCCCTCC
* *
139805 ATGTCGTGTCAAA-CTCTGAACTCTGA-C
64 ATGGCGTGTCAAACCT-TGAACCCT-ATC
* * *
139832 GTGTCATAGATTCCCTCCATGCCATGTCACAAATTCTGAACTA-TGGAGTGTCAAAGATTCCCTC
1 GTGTCACAGATTCCCTCCATGCC-TGTCACAAATTCTGAA-TACTGCA-TGTCACAGATTCCCTC
* * *
139896 CATGGCGTGTCACCAAACTCTAAACCTTATC
63 CATGGCGTGTCA--AACCT-TGAACCCTATC
139927 GTGTCACA
1 GTGTCACA
139935 ACCTTGTTAC
Statistics
Matches: 160, Mismatches: 25, Indels: 19
0.78 0.12 0.09
Matches are distributed among these distances:
91 6 0.04
92 71 0.44
93 6 0.04
94 61 0.38
95 16 0.10
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (90 bp):
GTGTCACAGATTCCCTCCATGCCTGTCACAAATTCTGAATACTGCATGTCACAGATTCCCTCCAT
GGCGTGTCAAACCTTGAACCCTATC
Found at i:139883 original size:139 final size:140
Alignment explanation
Indices: 139647--139916 Score: 336
Period size: 139 Copynumber: 1.9 Consensus size: 140
139637 AACACTAGTG
* * *
139647 TGTCACAGATTCCCTCCATGGTGTGTCACCAACTTTGAATACTGACGTGTCACAGATTCCCTCTA
1 TGTCACAGATTCCATCCATGGTGTGTCA-CAACTCTGAATACTGACGTGTCACAGATTCCCTCCA
* * * * *
139712 TGGCATGTCACAAACCTTGAACCCTATCGTGTCACAGATTCCCTTCATGGCCTGTCA-TAAACTC
65 TGCCATGTCACAAACCTTGAA-CCTATAGTGTCAAAGATTCCCTCCATGGCCTGTCACCAAACTC
139776 TGAATACTGCCA
129 TGAATACTGCCA
*
139788 TGTCACAGATTCCATCCAT-GTCGTGTCA-AACTCTGAACT-CTGACGTGTCATAGATTCCCTCC
1 TGTCACAGATTCCATCCATGGT-GTGTCACAACTCTGAA-TACTGACGTGTCACAGATTCCCTCC
* *
139850 ATGCCATGTCACAAA-TTCTGAA-CTATGGAGTGTCAAAGATTCCCTCCATGGCGTGTCACCAAA
64 ATGCCATGTCACAAACCT-TGAACCTAT--AGTGTCAAAGATTCCCTCCATGGCCTGTCACCAAA
139913 CTCT
126 CTCT
139917 AAACCTTATC
Statistics
Matches: 112, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
137 4 0.04
138 1 0.01
139 73 0.65
140 10 0.09
141 24 0.21
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (140 bp):
TGTCACAGATTCCATCCATGGTGTGTCACAACTCTGAATACTGACGTGTCACAGATTCCCTCCAT
GCCATGTCACAAACCTTGAACCTATAGTGTCAAAGATTCCCTCCATGGCCTGTCACCAAACTCTG
AATACTGCCA
Found at i:142931 original size:23 final size:23
Alignment explanation
Indices: 142899--142943 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
142889 GTTGTTCATA
142899 GCATTACATGACTTCTTAATAAG
1 GCATTACATGACTTCTTAATAAG
* *
142922 GCATTGCATGACTTGTTAATAA
1 GCATTACATGACTTCTTAATAA
142944 ATCATTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (23 bp):
GCATTACATGACTTCTTAATAAG
Found at i:142949 original size:23 final size:23
Alignment explanation
Indices: 142898--142950 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
142888 AGTTGTTCAT
142898 AGCATTACATGACTTCTTAATAA
1 AGCATTACATGACTTCTTAATAA
* * *
142921 GGCATTGCATGACTTGTTAATAA
1 AGCATTACATGACTTCTTAATAA
*
142944 ATCATTA
1 AGCATTA
142951 TAGATTAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (23 bp):
AGCATTACATGACTTCTTAATAA
Found at i:146731 original size:26 final size:26
Alignment explanation
Indices: 146671--146738 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
146661 AACATTGTTG
* *
146671 TGTATCATCTCCAAATTATTCTTTGC
1 TGTATCATTTACAAATTATTCTTTGC
**
146697 TGTATCATTTACAAATTATTCTTTTT
1 TGTATCATTTACAAATTATTCTTTGC
146723 TGTATCATTTAACAAA
1 TGTATCATTT-ACAAA
146739 GAGAAAGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 32 0.86
27 5 0.14
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (26 bp):
TGTATCATTTACAAATTATTCTTTGC
Found at i:147081 original size:23 final size:23
Alignment explanation
Indices: 147055--147101 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
147045 TAGTGTGCAT
147055 GAATCGCATGAATATTTGATATG
1 GAATCGCATGAATATTTGATATG
*
147078 GAATCGCATGACTATTTGATATG
1 GAATCGCATGAATATTTGATATG
147101 G
1 G
147102 TATTACATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (23 bp):
GAATCGCATGAATATTTGATATG
Found at i:147110 original size:23 final size:23
Alignment explanation
Indices: 147055--147113 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
147045 TAGTGTGCAT
* *
147055 GAATCGCATGAATATTTGATATG
1 GAATCACATGACTATTTGATATG
*
147078 GAATCGCATGACTATTTGATATG
1 GAATCACATGACTATTTGATATG
* *
147101 GTATTACATGACT
1 GAATCACATGACT
147114 CACTTATTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (23 bp):
GAATCACATGACTATTTGATATG
Found at i:151297 original size:22 final size:22
Alignment explanation
Indices: 151272--151319 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
151262 TTGGCCCAAC
* * *
151272 GTCATGCAATATATAACAACAA
1 GTCATGAAATACATAAAAACAA
*
151294 GTCATGAAATACATAAAAACTA
1 GTCATGAAATACATAAAAACAA
151316 GTCA
1 GTCA
151320 CATAATACCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.17, G:0.10, T:0.23
Consensus pattern (22 bp):
GTCATGAAATACATAAAAACAA
Found at i:151478 original size:211 final size:211
Alignment explanation
Indices: 150872--151542 Score: 720
Period size: 211 Copynumber: 3.2 Consensus size: 211
150862 TTGGCCCAAC
* * * * *
150872 GTCACGTAATACATAACAACCAGTCACGCAATGTCTAAAAAGTAGTCAAGAAATGTCTTAAAACA
1 GTCACGAAATACATAAAAACCAGTCACACAATGCCTAAAAAGTAGTCAAGAAATGTCTCAAAACA
* * * * * *
150937 AGATATGCGTTGGACATTTCAT-GCAATGCCTATATGCTAGTCTAACAATACCTAATAATAAGTC
66 AGATATGCATTGAACAATTC-TCGCAACGCCTATAAGCTAGTCTCACAATACCTAATAATAAGTC
* * * * * *
151001 GCTCAATGCCTAATGTCCACTTACACTATAACAACATAACTAGTCATGTATTGGCCTAACGTCAC
130 ACGCAATGCCTAATATCCACTTACATTATGACAACATAACTAGTCATGTATTGGCCCAACGTCAC
*
151066 GTAATACATAACAACAA
195 GCAATACATAACAACAA
* * * * *
151083 GTCACGAAATATATAAAAACTAATCA-AGCAATGCCTAAAAAGTAGTAAAGAAATGTCTCAAAAT
1 GTCACGAAATACATAAAAACCAGTCACA-CAATGCCTAAAAAGTAGTCAAGAAATGTCTCAAAAC
* * * ** * * * *
151147 AACATATGCATTGCACAATTCACATAACGTCTATAAACGAGTCTCACAATACCTAATAATTAGTC
65 AAGATATGCATTGAACAATTCTCGCAACGCCTATAAGCTAGTCTCACAATACCTAATAATAAGTC
* *** * * *
151212 ATGCAATGCCTAATATCCACTTGTGTTATGTCAACATAACTAGCCATGTATTGGCCCAACGTCAT
130 ACGCAATGCCTAATATCCACTTACATTATGACAACATAACTAGTCATGTATTGGCCCAACGTCAC
*
151277 GCAATATATAACAACAA
195 GCAATACATAACAACAA
* * * * *
151294 GTCATGAAATACATAAAAACTAGTCACATAATACCTAAAATGTAGTCAAGAAATGTCTCAAAACA
1 GTCACGAAATACATAAAAACCAGTCACACAATGCCTAAAAAGTAGTCAAGAAATGTCTCAAAACA
* * *
151359 AGATATGCATTAAACAATTCTCGCAACGCCTATAAGCTACTCTCGCAATACCTAATAATAAGTCA
66 AGATATGCATTGAACAATTCTCGCAACGCCTATAAGCTAGTCTCACAATACCTAATAATAAGTCA
* * * * * * * *
151424 CGCAATGCCTAATATCCACTCT-CATTATGCCAAAATACCCAATCACGCATTGGCCCTACGTCAC
131 CGCAATGCCTAATATCCACT-TACATTATGACAACATAACTAGTCATGTATTGGCCCAACGTCAC
*
151488 GCAATACATAAAAACCAA
195 GCAATACATAACAA-CAA
* * * * *
151506 -TCACGGAATACACAACAACCAGACACATAATGCCTAA
1 GTCACGAAATACATAAAAACCAGTCACACAATGCCTAA
151543 TATCCATTCA
Statistics
Matches: 374, Mismatches: 81, Indels: 10
0.80 0.17 0.02
Matches are distributed among these distances:
211 369 0.99
212 5 0.01
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (211 bp):
GTCACGAAATACATAAAAACCAGTCACACAATGCCTAAAAAGTAGTCAAGAAATGTCTCAAAACA
AGATATGCATTGAACAATTCTCGCAACGCCTATAAGCTAGTCTCACAATACCTAATAATAAGTCA
CGCAATGCCTAATATCCACTTACATTATGACAACATAACTAGTCATGTATTGGCCCAACGTCACG
CAATACATAACAACAA
Found at i:151515 original size:22 final size:22
Alignment explanation
Indices: 151484--151526 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
151474 TGGCCCTACG
*
151484 TCACGCAATACATAAAAACCAA
1 TCACGCAATACACAAAAACCAA
* *
151506 TCACGGAATACACAACAACCA
1 TCACGCAATACACAAAAACCA
151527 GACACATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.30, G:0.07, T:0.12
Consensus pattern (22 bp):
TCACGCAATACACAAAAACCAA
Found at i:151559 original size:22 final size:22
Alignment explanation
Indices: 151529--151597 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
151519 AACAACCAGA
* *
151529 CACATAATGCCTAATATCCATT
1 CACACAATGCATAATATCCATT
*
151551 CATACAATGCATAATATCCATT
1 CACACAATGCATAATATCCATT
*
151573 AACACAATGCATAATATCCATT
1 CACACAATGCATAATATCCATT
151595 CAC
1 CAC
151598 TTAATGCTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.41, C:0.26, G:0.04, T:0.29
Consensus pattern (22 bp):
CACACAATGCATAATATCCATT
Found at i:152819 original size:16 final size:16
Alignment explanation
Indices: 152798--152833 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
152788 CTACACTTTG
152798 GGATGGTGAGAAAGTT
1 GGATGGTGAGAAAGTT
152814 GGATGGTGAGAAAGTT
1 GGATGGTGAGAAAGTT
152830 GGAT
1 GGAT
152834 AGCGATATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.25
Consensus pattern (16 bp):
GGATGGTGAGAAAGTT
Found at i:159947 original size:25 final size:25
Alignment explanation
Indices: 159915--159977 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
159905 TGGAAATAAT
* *
159915 TTTCAACAAACAC-AATTTTGTTTG
1 TTTCAACAAACACAAATTCTATTTG
*
159939 TTTCAAACAAAAACAAATTCTATTTG
1 TTTC-AACAAACACAAATTCTATTTG
*
159965 TTTTTAACAAACA
1 -TTTCAACAAACA
159978 AATATAATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
24 4 0.13
25 8 0.26
26 16 0.52
27 3 0.10
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (25 bp):
TTTCAACAAACACAAATTCTATTTG
Found at i:165604 original size:2 final size:2
Alignment explanation
Indices: 165597--165624 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
165587 TTTTAAAGCT
165597 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
165625 AAAAGCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:166268 original size:38 final size:39
Alignment explanation
Indices: 166200--166274 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 39
166190 AGTTGTTTCT
166200 TTTCACAACACAACTATTTAAAAATTATATCTAATAATC
1 TTTCACAACACAACTATTTAAAAATTATATCTAATAATC
* * *
166239 TTTCATAATACAACTA-TTAAAAGTTATATCTAATAA
1 TTTCACAACACAACTATTTAAAAATTATATCTAATAA
166275 GGTANNNNNN
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 19 0.58
39 14 0.42
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.37
Consensus pattern (39 bp):
TTTCACAACACAACTATTTAAAAATTATATCTAATAATC
Found at i:169568 original size:56 final size:55
Alignment explanation
Indices: 169508--169625 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
169498 ACACATGCCC
* * * *
169508 AGCACCACAGCCCTTGCTAGAAATGGTGAATAAGTGATGTGCCTTAGCACACATCT
1 AGCACCAAAGCCCTTGCTAGAAAGGGT-AACAAGTGATGTGCCTTAACACACATCT
* * * * * *
169564 AGCACCAAAGCCTTTGTTATATAGGGTAACAAGTGATGTGCCTTAACACACGTTT
1 AGCACCAAAGCCCTTGCTAGAAAGGGTAACAAGTGATGTGCCTTAACACACATCT
169619 AGCACCA
1 AGCACCA
169626 TAATCGCTGC
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
55 31 0.60
56 21 0.40
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (55 bp):
AGCACCAAAGCCCTTGCTAGAAAGGGTAACAAGTGATGTGCCTTAACACACATCT
Found at i:169643 original size:55 final size:54
Alignment explanation
Indices: 169443--169643 Score: 134
Period size: 56 Copynumber: 3.6 Consensus size: 54
169433 TGTGTTTTAG
* * * * * * * *
169443 CACACGTCTAGCACCATAGTCCTTGTTGGATAGGGTGAGCAAGTTATGTGTCTCAA
1 CACACATCTAGCACCAAAG-CCTTGCTAGATAGGGT-AACAAGTGATGTGCCTTAA
*** * * * * * *
169499 CACATGCCCAGCACCACAGCCCTTGCTAGAAATGGTGAATAAGTGATGTGCCTTAG
1 CACACATCTAGCACCAAAG-CCTTGCTAGATAGGGT-AACAAGTGATGTGCCTTAA
* *
169555 CACACATCTAGCACCAAAGCCTTTGTTATATAGGGTAACAAGTGATGTGCCTTAA
1 CACACATCTAGCACCAAAGCC-TTGCTAGATAGGGTAACAAGTGATGTGCCTTAA
* * *
169610 CACACGTTTAGCACCATAATCGC-TGCTAGATAGG
1 CACACATCTAGCACCA-AAGC-CTTGCTAGATAGG
169644 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 31, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
55 42 0.38
56 68 0.61
57 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (54 bp):
CACACATCTAGCACCAAAGCCTTGCTAGATAGGGTAACAAGTGATGTGCCTTAA
Found at i:169889 original size:58 final size:60
Alignment explanation
Indices: 169785--169913 Score: 172
Period size: 58 Copynumber: 2.2 Consensus size: 60
169775 CTTACTTATT
* * * *
169785 GCACCATAGCCCTTGCTAGTTAGGAAGAACAAGCATGTGTCTTACTTATTACATATGTCTA
1 GCACCATAGCCCTTGCTAG-TAGGAAGAACAAACATGTGTCGTACTTATTACACATCTCTA
* * *
169846 GTACCATAGCCCTTGCTAG-A-TAAGAACAAACATGTGTCGTACTTATTGCACATCTCTA
1 GCACCATAGCCCTTGCTAGTAGGAAGAACAAACATGTGTCGTACTTATTACACATCTCTA
169904 GCACCATAGC
1 GCACCATAGC
169914 ATCGACTAGA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
58 41 0.68
59 1 0.02
61 18 0.30
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (60 bp):
GCACCATAGCCCTTGCTAGTAGGAAGAACAAACATGTGTCGTACTTATTACACATCTCTA
Found at i:169923 original size:58 final size:59
Alignment explanation
Indices: 169785--169971 Score: 180
Period size: 61 Copynumber: 3.1 Consensus size: 59
169775 CTTACTTATT
* * * * * *
169785 GCACCATAGCCCTTGCTAGTTAGGAAGAACAAGCATGTGTCTTACTTATTACATATGTCTA
1 GCACCATAGCCATCGCTAGATA--AAGAACAAGCATGTGTCTTACTTATTGCACATATCTA
* * * * * *
169846 GTACCATAGCCCTTGCTAGAT-AAGAACAAACATGTGTCGTACTTATTGCACATCTCTA
1 GCACCATAGCCATCGCTAGATAAAGAACAAGCATGTGTCTTACTTATTGCACATATCTA
* * *
169904 GCACCATAG-CATCGACTAGATAAAAATAACAAGCATGTTTCTTACCTATTGCACATATCTA
1 GCACCATAGCCATCG-CTAGAT--AAAGAACAAGCATGTGTCTTACTTATTGCACATATCTA
169965 GCACCAT
1 GCACCAT
169972 GCNNNNNNNN
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
57 3 0.03
58 46 0.43
61 57 0.54
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (59 bp):
GCACCATAGCCATCGCTAGATAAAGAACAAGCATGTGTCTTACTTATTGCACATATCTA
Found at i:170840 original size:21 final size:21
Alignment explanation
Indices: 170815--170868 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
170805 TTCTATCTCA
* *
170815 AATGTATTGATAGATGTTCAT
1 AATGTATCGATAAATGTTCAT
* * *
170836 GATGTATGGACAAATGTTCAT
1 AATGTATCGATAAATGTTCAT
170857 AATGTATCGATA
1 AATGTATCGATA
170869 CAATTTTTTA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.37
Consensus pattern (21 bp):
AATGTATCGATAAATGTTCAT
Found at i:171643 original size:48 final size:48
Alignment explanation
Indices: 171591--171689 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
171581 GTTTTAAGAA
*
171591 TGAAAATGATTTTCTAAGAAAATAAATTGTTAGTGATTGTAATATGAT
1 TGAAAATGATTTTCTAAGAAAATAAATTGTTAGTGATTATAATATGAT
*
171639 TGAAAATGATTTTCTAAGAAAATAAATTGTTGGTGATTATAATATGAT
1 TGAAAATGATTTTCTAAGAAAATAAATTGTTAGTGATTATAATATGAT
171687 TGA
1 TGA
171690 GATAATAGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (48 bp):
TGAAAATGATTTTCTAAGAAAATAAATTGTTAGTGATTATAATATGAT
Found at i:171947 original size:68 final size:68
Alignment explanation
Indices: 171874--172140 Score: 345
Period size: 68 Copynumber: 3.9 Consensus size: 68
171864 TATGTTTGGT
* * * * * *
171874 ATGATGAATGCCCTAAAATTATGTATATGATGTAAATTTCATATATCATATGAGATGATTAAGTA
1 ATGATGAATGCCATGAAATTATGTATATGATGTATATTTCATATACCACATGAGATGATTAAGAA
**
171939 TGC
66 AAC
* *
171942 ATGATGAATGCCATGAGATTATGTATATGATGTATATTTCATATACCACATGAGATGATTCAGAA
1 ATGATGAATGCCATGAAATTATGTATATGATGTATATTTCATATACCACATGAGATGATTAAGAA
172007 AAC
66 AAC
** * * *
172010 ATGATGAATGTTATGAAATTATGTATATGATGTATATTCCATATACTACATGAGATGATTGAGAA
1 ATGATGAATGCCATGAAATTATGTATATGATGTATATTTCATATACCACATGAGATGATTAAGAA
172075 AAC
66 AAC
* * * ** *
172078 ATGATGAATGTCATGAGATTATGTATATGATGTATTTTTCATATACCTTATGAGATGAATAAG
1 ATGATGAATGCCATGAAATTATGTATATGATGTATATTTCATATACCACATGAGATGATTAAG
172141 CATGTCTATG
Statistics
Matches: 174, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 174 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (68 bp):
ATGATGAATGCCATGAAATTATGTATATGATGTATATTTCATATACCACATGAGATGATTAAGAA
AAC
Found at i:172668 original size:20 final size:20
Alignment explanation
Indices: 172623--172668 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
172613 GGAATGTATA
172623 AGATTCTTGAAAGTATCGAT
1 AGATTCTTGAAAGTATCGAT
* * *
172643 ACATTCTTGAATGTATCGGT
1 AGATTCTTGAAAGTATCGAT
172663 AGATTC
1 AGATTC
172669 ATTGCAAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (20 bp):
AGATTCTTGAAAGTATCGAT
Found at i:191486 original size:22 final size:23
Alignment explanation
Indices: 191463--191566 Score: 77
Period size: 26 Copynumber: 4.3 Consensus size: 23
191453 TTTTTATTTT
191463 ATTTTTTAAAATATTAATAATTATA
1 ATTTTTTAAAATATTAATAA-T-TA
* *
191488 ATTTATTTAAAATATAAATAATTG
1 ATTT-TTTAAAATATTAATAATTA
**
191512 ATAATTT-AAATATTAATAATTTTA
1 ATTTTTTAAAATATTAATAA--TTA
*
191536 ATTAATTTTTAAAT-TTAATATATTA
1 ATT--TTTTAAAATATTAATA-ATTA
191561 ATTTTT
1 ATTTTT
191567 ATAATATGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
22 11 0.17
23 6 0.09
24 7 0.11
25 11 0.17
26 24 0.38
27 5 0.08
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTTTTAAAATATTAATAATTA
Found at i:191500 original size:26 final size:27
Alignment explanation
Indices: 191463--191519 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
191453 TTTTTATTTT
*
191463 ATTT-TTTAAAATATTAATAATT-ATA
1 ATTTATTTAAAATATAAATAATTGATA
191488 ATTTATTTAAAATATAAATAATTGATA
1 ATTTATTTAAAATATAAATAATTGATA
191515 ATTTA
1 ATTTA
191520 AATATTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 17 0.59
27 8 0.28
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (27 bp):
ATTTATTTAAAATATAAATAATTGATA
Found at i:194454 original size:35 final size:35
Alignment explanation
Indices: 194410--194513 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 35
194400 CTTAAGAAGT
*** **
194410 CCAATTAACTTAATTGTTTAATTTAATCAATTAGGC
1 CCAA-TAACTTAATTAAATAATTTAATCAATTAAAC
*
194446 CCAATAACTTGATTAAATAATTTAATCAATTAAAC
1 CCAATAACTTAATTAAATAATTTAATCAATTAAAC
* * * *
194481 CCAATAACATGATGAAACAAATTTAATCAATTA
1 CCAATAACTTAATTAAA-TAATTTAATCAATTA
194514 GGTCCANNNN
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 40 0.69
36 18 0.31
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.35
Consensus pattern (35 bp):
CCAATAACTTAATTAAATAATTTAATCAATTAAAC
Found at i:213289 original size:55 final size:55
Alignment explanation
Indices: 213205--213316 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
213195 AGTCTCGAGC
213205 AAGCCTTCGCAATTATCTATTTAACAAACCATAACATGTCTCTTAGAAATCTCAT
1 AAGCCTTCGCAATTATCTATTTAACAAACCATAACATGTCTCTTAGAAATCTCAT
*
213260 AAGCCTTCGCAATTATCTATTTAACAAACCATAACATGTCTCTTGGAAATCTCAT
1 AAGCCTTCGCAATTATCTATTTAACAAACCATAACATGTCTCTTAGAAATCTCAT
213315 AA
1 AA
213317 CCGTCACAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (55 bp):
AAGCCTTCGCAATTATCTATTTAACAAACCATAACATGTCTCTTAGAAATCTCAT
Found at i:214191 original size:103 final size:103
Alignment explanation
Indices: 214012--214219 Score: 389
Period size: 103 Copynumber: 2.0 Consensus size: 103
214002 TTGAGTAGTT
* * *
214012 AATCATAGATAATCAACTTGTGGACTCTTTTTCACATAATAACATCTGAGAGGTCTCATTTTACT
1 AATCATAGATAATCAACTTGTGGACTCTCTTTCACATAATAACATCCGAGAGGTCTCATTCTACT
214077 GGATTACCATAGCCATGGCAGTCTCGACGATGTTGGTC
66 GGATTACCATAGCCATGGCAGTCTCGACGATGTTGGTC
214115 AATCATAGATAATCAACTTGTGGACTCTCTTTCACATAATAACATCCGAGAGGTCTCATTCTACT
1 AATCATAGATAATCAACTTGTGGACTCTCTTTCACATAATAACATCCGAGAGGTCTCATTCTACT
214180 GGATTACCATAGCCATGGCAGTCTCGACGATGTTGGTC
66 GGATTACCATAGCCATGGCAGTCTCGACGATGTTGGTC
214218 AA
1 AA
214220 CATTAGAGAA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (103 bp):
AATCATAGATAATCAACTTGTGGACTCTCTTTCACATAATAACATCCGAGAGGTCTCATTCTACT
GGATTACCATAGCCATGGCAGTCTCGACGATGTTGGTC
Found at i:214704 original size:20 final size:20
Alignment explanation
Indices: 214679--214718 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
214669 CAATAACTTA
*
214679 TATATATTATATATATAGCT
1 TATATATTATATATAAAGCT
214699 TATATATTATATATAAAGCT
1 TATATATTATATATAAAGCT
214719 AATTCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (20 bp):
TATATATTATATATAAAGCT
Found at i:220944 original size:15 final size:14
Alignment explanation
Indices: 220911--220950 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
220901 TTGAATTCTG
220911 AAATTAAAAAAATA
1 AAATTAAAAAAATA
*
220925 AAATTAAAAATAATT
1 AAATTAAAAA-AATA
*
220940 GAATTAAAAAA
1 AAATTAAAAAA
220951 GGAACAGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (14 bp):
AAATTAAAAAAATA
Found at i:221142 original size:11 final size:11
Alignment explanation
Indices: 221128--221153 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
221118 AAAATTTCAA
221128 AATAAAATAAT
1 AATAAAATAAT
221139 AATAAAATAAT
1 AATAAAATAAT
221150 AATA
1 AATA
221154 TTTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:240595 original size:2 final size:2
Alignment explanation
Indices: 240588--240613 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
240578 ATTCTTGTAG
240588 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
240614 TCATTCCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:249537 original size:77 final size:74
Alignment explanation
Indices: 249433--249624 Score: 189
Period size: 70 Copynumber: 2.6 Consensus size: 74
249423 TCGGTAATTA
* * * *
249433 TTGCTTTTGTTACTATTTTGCCAGTTCTTCTTTTTGTTTTTAGTCTTCTTTTTTATTTGTC-GAT
1 TTGCTTTTGCTACT-GTTTGGCAGTTCTTCTTTTTGTTTTTA-T-TTCTTTTTGATTTGTCAG-T
* *
249497 GCATGCGTACATT
62 GCATGCATACATG
249510 TTGCTTTTGCTACTGTCTTGGCAGTTCTTC----T-TTTTTATTTCTTTTTGATTTGTCAGTGCA
1 TTGCTTTTGCTACTGT-TTGGCAGTTCTTCTTTTTGTTTTTATTTCTTTTTGATTTGTCAGTGCA
249570 TGCATACATG
65 TGCATACATG
* ** * *
249580 TTGCTTTTACTGTTGTTCTGGCAATTCTTCTTTTTGCTTTTATTT
1 TTGCTTTTGCTACTGTT-TGGCAGTTCTTCTTTTTGTTTTTATTT
249625 TGTCGGCATG
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
69 1 0.01
70 51 0.53
71 2 0.02
72 6 0.06
73 1 0.01
74 1 0.01
75 8 0.08
76 1 0.01
77 25 0.26
ACGTcount: A:0.11, C:0.16, G:0.15, T:0.57
Consensus pattern (74 bp):
TTGCTTTTGCTACTGTTTGGCAGTTCTTCTTTTTGTTTTTATTTCTTTTTGATTTGTCAGTGCAT
GCATACATG
Found at i:255061 original size:29 final size:28
Alignment explanation
Indices: 254977--255102 Score: 137
Period size: 29 Copynumber: 4.4 Consensus size: 28
254967 TGGCAGCCTT
*
254977 AACATATTTTTCTTAATTTAGAAAAGAA
1 AACATATTTTTCTTAATTTAGACAAGAA
* * **
255005 AGCATGTTTGGCTTTAATTTAGACAAGAA
1 AACATATTTTTC-TTAATTTAGACAAGAA
* *
255034 AATATATTTTTCTTAATTTAAGATAAG-A
1 AACATATTTTTCTTAATTT-AGACAAGAA
*
255062 AACATATTTTTATCTTAATCTAGACAAGAA
1 AACATA-TTTT-TCTTAATTTAGACAAGAA
255092 AACATATTTTT
1 AACATATTTTT
255103 NNNNNNNNNN
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
28 22 0.28
29 42 0.53
30 15 0.19
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (28 bp):
AACATATTTTTCTTAATTTAGACAAGAA
Found at i:255087 original size:58 final size:57
Alignment explanation
Indices: 254977--255102 Score: 164
Period size: 58 Copynumber: 2.2 Consensus size: 57
254967 TGGCAGCCTT
* * *
254977 AACATATTTTTCTTAATTTAGAAAAGAAAGCATGTTTGGCTTTAATTTAGACAAGAA
1 AACATATTTTTCTTAATTTAGAAAAGAAAGCATATTTGGATTTAATCTAGACAAGAA
* * **
255034 AATATATTTTTCTTAATTTAAGATAAGAAA-CATATTTTTATCTTAATCTAGACAAGAA
1 AACATATTTTTCTTAATTT-AGAAAAGAAAGCATATTTGGAT-TTAATCTAGACAAGAA
255092 AACATATTTTT
1 AACATATTTTT
255103 NNNNNNNNNN
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
57 25 0.42
58 34 0.58
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (57 bp):
AACATATTTTTCTTAATTTAGAAAAGAAAGCATATTTGGATTTAATCTAGACAAGAA
Found at i:284103 original size:37 final size:37
Alignment explanation
Indices: 284062--284143 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
284052 AAGCTTACTC
*
284062 ATCTCAT-AAGGTATATAAAAAATACATTATATACATA
1 ATCTCATGAA-GTATATAAAAAATACATCATATACATA
* ** *
284099 ATCTCATGTAGTATATGGAATATACATCATATACATA
1 ATCTCATGAAGTATATAAAAAATACATCATATACATA
284136 ATCTCATG
1 ATCTCATG
284144 GTATTCGTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.34
Consensus pattern (37 bp):
ATCTCATGAAGTATATAAAAAATACATCATATACATA
Found at i:284193 original size:68 final size:68
Alignment explanation
Indices: 284109--284280 Score: 227
Period size: 68 Copynumber: 2.5 Consensus size: 68
284099 ATCTCATGTA
* * * * *
284109 GTATATGGAATATACATCATATACATAATCTCATGGTATTCGTTATGCATACTTAATCACCTCAT
1 GTATATGGAATTTACATCATATACATAATCTTATGGTATACATCATGCATACTTAATCACCTCAT
284174 ATG
66 ATG
* * * * * *
284177 GTATATGAAATTTACATCATTTACACAATCTTATAGTATACATCATGCATACTTAGTCATCTCAT
1 GTATATGGAATTTACATCATATACATAATCTTATGGTATACATCATGCATACTTAATCACCTCAT
284242 ATG
66 ATG
* *
284245 ATATATGGAATTTAGATCATATACATAATCTTATGG
1 GTATATGGAATTTACATCATATACATAATCTTATGG
284281 CAATCATCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (68 bp):
GTATATGGAATTTACATCATATACATAATCTTATGGTATACATCATGCATACTTAATCACCTCAT
ATG
Found at i:289907 original size:36 final size:36
Alignment explanation
Indices: 289811--289957 Score: 157
Period size: 36 Copynumber: 4.3 Consensus size: 36
289801 TCTCAAGCAC
* * *
289811 TTGATTAAAATTGTTTAATTAAG---TTGTGCCTAA
1 TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
* *
289844 TTCATTAAA-TTG-TT--T-AAGTCATTGGGCCTAA
1 TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
*
289875 TTGATTAAATTTGTTTAATCAGGTTATTGGGCCTAA
1 TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
* * *
289911 TTGATTAAATTTTTTTAATTAAGTTATTAGGCCTAA
1 TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
289947 TTGATTAAATT
1 TTGATTAAATT
289958 AAATAATTTA
Statistics
Matches: 97, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
28 3 0.03
29 1 0.01
31 19 0.20
32 6 0.06
33 10 0.10
35 1 0.01
36 57 0.59
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (36 bp):
TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
Found at i:295467 original size:17 final size:18
Alignment explanation
Indices: 295445--295482 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
295435 CAAGTGGAAA
295445 ATTTTA-AAAAAAATAAT
1 ATTTTATAAAAAAATAAT
*
295462 ATTTTATTAAAAAATAAT
1 ATTTTATAAAAAAATAAT
295480 ATT
1 ATT
295483 AAAATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTTATAAAAAAATAAT
Found at i:298858 original size:14 final size:14
Alignment explanation
Indices: 298836--298870 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
298826 ATCCTATTTT
*
298836 GGCATCCTTGGTTA
1 GGCACCCTTGGTTA
298850 GGCACCCTTGGTTA
1 GGCACCCTTGGTTA
298864 GGCACCC
1 GGCACCC
298871 GTTAGGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.14, C:0.31, G:0.29, T:0.26
Consensus pattern (14 bp):
GGCACCCTTGGTTA
Found at i:309768 original size:21 final size:20
Alignment explanation
Indices: 309746--309785 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
309736 ATTAAGTTAT
309746 TTTTG-TTTAATTTAACTTTA
1 TTTTGCTTTAATTT-ACTTTA
309766 TTTTGCTTTAATTTACTTTA
1 TTTTGCTTTAATTTACTTTA
309786 AGAAGAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTTGCTTTAATTTACTTTA
Found at i:313239 original size:59 final size:59
Alignment explanation
Indices: 313166--313305 Score: 185
Period size: 59 Copynumber: 2.3 Consensus size: 59
313156 ATTGAGACAA
* * *
313166 ATGTATTTTATTGTCTAGATTAAGACAAAACATATTTTTCTTGCCTTAAATT-AAGGCAAAC
1 ATGT-TTTT-TTGTCTAAATTAAGACAAAACATATTTTTCTTGCCTCAAATTCAA-CCAAAC
* *
313227 ATGTTTTTTTGTCTAAATTAAGACAAAATATATTTTTCTTGTCTCAAATTCAACCAAAC
1 ATGTTTTTTTGTCTAAATTAAGACAAAACATATTTTTCTTGCCTCAAATTCAACCAAAC
313286 ATGTTTTCTTT-TCTAAATTA
1 ATGTTTT-TTTGTCTAAATTA
313306 TGGCATAACA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
59 59 0.82
60 9 0.12
61 4 0.06
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (59 bp):
ATGTTTTTTTGTCTAAATTAAGACAAAACATATTTTTCTTGCCTCAAATTCAACCAAAC
Found at i:313253 original size:28 final size:29
Alignment explanation
Indices: 313126--313305 Score: 147
Period size: 29 Copynumber: 6.2 Consensus size: 29
313116 TTTTATCTTT
**
313126 AATTAAGACAAATCATGTTACT-TTGTCTA
1 AATTAAGACAAA-CATGTTTTTCTTGTCTA
* *
313155 AATTGAGAC-AA-ATGTATTTTATTGTCTA
1 AATTAAGACAAACATGT-TTTTCTTGTCTA
* * *
313183 GATTAAGACAAAACATATTTTTCTTGCCTTA
1 AATTAAGAC-AAACATGTTTTTCTTGTC-TA
*
313214 AATTAAGGCAAACATGTTTTT-TTGTCTA
1 AATTAAGACAAACATGTTTTTCTTGTCTA
* *
313242 AATTAAGACAAAATATATTTTTCTTGTCTCA
1 AATTAAGAC-AAACATGTTTTTCTTGTCT-A
* *
313273 AATTCAA-CCAAACATG-TTTTCTTTTCTA
1 AATT-AAGACAAACATGTTTTTCTTGTCTA
313301 AATTA
1 AATTA
313306 TGGCATAACA
Statistics
Matches: 122, Mismatches: 19, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
26 4 0.03
27 3 0.02
28 31 0.25
29 32 0.26
30 32 0.26
31 18 0.15
32 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (29 bp):
AATTAAGACAAACATGTTTTTCTTGTCTA
Found at i:317418 original size:17 final size:17
Alignment explanation
Indices: 317388--317420 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
317378 TTCATGATAT
317388 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
317405 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
317421 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:317688 original size:28 final size:28
Alignment explanation
Indices: 317602--317702 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
317592 GTCTATTCTG
* * * *
317602 AGACAAATATGCTTTCTTTTCTAGATTA
1 AGACAAACATGTTTTCTTATCTAAATTA
* *
317630 AGACAAAAAAATATTTTTCTTATCCTAAATTA
1 AGAC--AAACAT-GTTTTCTTAT-CTAAATTA
*
317662 AGACAAACATGTTTTCTTGTCTAAATTA
1 AGACAAACATGTTTTCTTATCTAAATTA
*
317690 AAACAAACATGTT
1 AGACAAACATGTT
317703 AAAACTGTCC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 24 0.40
29 8 0.13
30 10 0.17
31 7 0.12
32 11 0.18
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.38
Consensus pattern (28 bp):
AGACAAACATGTTTTCTTATCTAAATTA
Found at i:322253 original size:29 final size:28
Alignment explanation
Indices: 322211--322369 Score: 158
Period size: 29 Copynumber: 5.5 Consensus size: 28
322201 TATAGCCCCG
* *
322211 ACATGCTTGTCTTAATTTGGACAAGAAA
1 ACATGTTTGTCTTAATTTAGACAAGAAA
*
322239 ACATGCTTTGTCTTAATTTAGATAAGAAA
1 ACATG-TTTGTCTTAATTTAGACAAGAAA
* * *
322268 ACATGTTATGCCATAATTTAGAAAAGAAA
1 ACATGTT-TGTCTTAATTTAGACAAGAAA
*
322297 ACATGTTTGGT-TGAATTTAAGACAAGAAAA
1 ACATGTTT-GTCTTAATTT-AGACAAG-AAA
* * *
322327 ATATATTTTGTCTTAATTTAGACAAAAAA
1 ACAT-GTTTGTCTTAATTTAGACAAGAAA
*
322356 ACATGTTTGCCTTA
1 ACATGTTTGTCTTA
322370 NNNNNNNNNN
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
28 21 0.20
29 63 0.59
30 14 0.13
31 9 0.08
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (28 bp):
ACATGTTTGTCTTAATTTAGACAAGAAA
Found at i:322324 original size:58 final size:59
Alignment explanation
Indices: 322223--322364 Score: 148
Period size: 59 Copynumber: 2.4 Consensus size: 59
322213 ATGCTTGTCT
* * * * *
322223 TAATTTGGACAAGAAAACATGCTTT-GTCTTAATTTAGATAAG-AAAACATGTTATGCCA
1 TAATTTAGAAAAGAAAACATG-TTTGGTCTGAATTTAGACAAGAAAAACATATTATGCCA
* * * *
322281 TAATTTAGAAAAGAAAACATGTTTGGT-TGAATTTAAGACAAGAAAAATATATTTTGTCT
1 TAATTTAGAAAAGAAAACATGTTTGGTCTGAATTT-AGACAAGAAAAACATATTATGCCA
322340 TAATTTAGACAAA-AAAACATGTTTG
1 TAATTTAGA-AAAGAAAACATGTTTG
322365 CCTTANNNNN
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
57 9 0.13
58 27 0.38
59 32 0.45
60 3 0.04
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (59 bp):
TAATTTAGAAAAGAAAACATGTTTGGTCTGAATTTAGACAAGAAAAACATATTATGCCA
Found at i:337139 original size:33 final size:36
Alignment explanation
Indices: 337090--337157 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 36
337080 GTCTAGATTA
337090 AGACAAAACATATTTTCCT-T-TAAATTAAGACAAG
1 AGACAAAACATATTTTCCTATATAAATTAAGACAAG
* *
337124 AGAC-AAACATGTTTTCTTATATAAATTAAGACAA
1 AGACAAAACATATTTTCCTATATAAATTAAGACAA
337158 AACAAGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 12 0.40
34 5 0.17
35 13 0.43
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (36 bp):
AGACAAAACATATTTTCCTATATAAATTAAGACAAG
Found at i:337166 original size:29 final size:28
Alignment explanation
Indices: 337124--337503 Score: 392
Period size: 29 Copynumber: 13.4 Consensus size: 28
337114 TTAAGACAAG
* *
337124 AGACAAACATGTTTTCTTATATAAATTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
* *
337152 AGACAAAACAAGTTTTCTTGTCTAAACTA
1 AGAC-AAACATGTTTTCTTGTCTAAATTA
** * * **
337181 AGATTAACA-ATTTTCCTGTAAAAATTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
337208 AGACAAACATGTTTTCTTGTCTTAAATTA
1 AGACAAACATGTTTTCTTGTC-TAAATTA
*
337237 AGACAAACATGTTTT-TGTCATCTAAATTA
1 AGACAAACATGTTTTCT-T-GTCTAAATTA
* *
337266 AGAC-AACATATTTTCATGTCTAAATTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
*
337293 AGACAAACATGTTTTCTTGTCTAATTTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
* *
337321 CGACAAA-ATATTTTCTCTTGTCTAAATTA
1 AGACAAACAT-GTTT-TCTTGTCTAAATTA
*
337350 AGACAAACATGTTTTCTTATCTAAATTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
* * *
337378 GGACAAAGCATGTTTTC-TGTCCAAATCA
1 AGACAAA-CATGTTTTCTTGTCTAAATTA
* *
337406 AGACAAACGTGTTTTTTTGTCTAAATTA
1 AGACAAACATGTTTTCTTGTCTAAATTA
* * * *
337434 TGACATAACATGTTTTCTTGTATACATCA
1 AGACA-AACATGTTTTCTTGTCTAAATTA
337463 AGACAAAACATGTTTTCTTGTCTAAATTA
1 AGAC-AAACATGTTTTCTTGTCTAAATTA
* *
337492 AGATAGACATGT
1 AGACAAACATGT
337504 AAAAGCTACC
Statistics
Matches: 287, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
27 42 0.15
28 109 0.38
29 131 0.46
30 5 0.02
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (28 bp):
AGACAAACATGTTTTCTTGTCTAAATTA
Found at i:337279 original size:85 final size:85
Alignment explanation
Indices: 337048--337503 Score: 408
Period size: 85 Copynumber: 5.3 Consensus size: 85
337038 AAATATATTA
* * * * *
337048 TCTTCTCTAAATTGAGATAAATATGTTTTC-TTGTCTAGATTAAGACAAAACATATTTTCCTT-T
1 TCTTGTCTAAATTAAGACAAACATGTTTTCTTTGTCTAAATTAAGAC-AAACATATTTT-CTTGT
**
337111 AAATTAAGACAAGAGACAAACATGTTT
64 --A-TAA-ATTA-AGACAAACATGTTT
* * * * ** *
337138 TCTTATATAAATTAAGACAAAACAAGTTTTC-TTGTCTAAACTAAGATTAACA-ATTTTCCTGTA
1 TCTTGTCTAAATTAAGAC-AAACATGTTTTCTTTGTCTAAATTAAGACAAACATATTTTCTTGTA
*
337201 AAAATTAAGACAAACATGTTT
65 TAAATTAAGACAAACATGTTT
** *
337222 TCTTGTCTTAAATTAAGACAAACATGTTTT-TGTCATCTAAATTAAGAC-AACATATTTTCATGT
1 TCTTGTC-TAAATTAAGACAAACATGTTTTCT-TTGTCTAAATTAAGACAAACATATTTTCTTGT
*
337285 CTAAATTAAGACAAACATGTTT
64 ATAAATTAAGACAAACATGTTT
* * * * * *
337307 TCTTGTCTAATTTACGACAAA-ATATTTTCTCTTGTCTAAATTAAGACAAACATGTTTTCTTATC
1 TCTTGTCTAAATTAAGACAAACATGTTTTCT-TTGTCTAAATTAAGACAAACATATTTTCTTGTA
*
337371 TAAATTAGGACAAAGCATGTTT
65 TAAATTAAGACAAA-CATGTTT
* * * * *
337393 TC-TGTCCAAATCAAGACAAACGTGTTTT-TTTGTCTAAATTATGACATAACATGTTTTCTTGTA
1 TCTTGTCTAAATTAAGACAAACATGTTTTCTTTGTCTAAATTAAGACA-AACATATTTTCTTGTA
* *
337456 TACATCAAGACAAAACATGTTT
65 TAAATTAAGAC-AAACATGTTT
* *
337478 TCTTGTCTAAATTAAGATAGACATGT
1 TCTTGTCTAAATTAAGACAAACATGT
337504 AAAAGCTACC
Statistics
Matches: 302, Mismatches: 51, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
83 6 0.02
84 76 0.25
85 133 0.44
86 37 0.12
87 1 0.00
88 2 0.01
89 6 0.02
90 18 0.06
91 23 0.08
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (85 bp):
TCTTGTCTAAATTAAGACAAACATGTTTTCTTTGTCTAAATTAAGACAAACATATTTTCTTGTAT
AAATTAAGACAAACATGTTT
Found at i:337308 original size:113 final size:111
Alignment explanation
Indices: 337053--337494 Score: 403
Period size: 113 Copynumber: 3.9 Consensus size: 111
337043 TATTATCTTC
* * * * * *
337053 TCTAAATTGAGATAAATATGTTTTCTTGTCTAGATTAAGACAAAACATATTTTCCT-T-TAAATT
1 TCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTAAGAC-AAACATGTTTTCTTGTCTAAATT
*
337116 AAGACAAGAGACAAACATGTTTTCTTATATAAATTAAGACAAAACA-AGTTTTCTTG
65 ------A-AGACAAACATGTTTTCTTATCTAAATTAAGAC-AAACATA-TTTTC-TG
* ** * * **
337172 TCTAAACTAAGATTAACA-ATTTTCCTGTAAAAATTAAGACAAACATGTTTTCTTGTCTTAAATT
1 TCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTAAGACAAACATGTTTTCTTGTC-TAAATT
337236 AAGACAAACATGTTTT-TGTCATCTAAATTAAGAC-AACATATTTTCATG
65 AAGACAAACATGTTTTCT-T-ATCTAAATTAAGACAAACATATTTTC-TG
* * *
337284 TCTAAATTAAGACAAACATGTTTTCTTGTCTAATTTACGACAAA-ATATTTTCTCTTGTCTAAAT
1 TCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTAAGACAAACAT-GTTT-TCTTGTCTAAAT
* *
337348 TAAGACAAACATGTTTTCTTATCTAAATTAGGACAAAGCATGTTTTCTG
64 TAAGACAAACATGTTTTCTTATCTAAATTAAGACAAA-CATATTTTCTG
* * * * * * * *
337397 TCCAAATCAAGACAAACGTGTTTTTTTGTCTAAATTATGACATAACATGTTTTCTTGTATACATC
1 TCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTAAGACA-AACATGTTTTCTTGTCTAAATT
*
337462 AAGACAAAACATGTTTTCTTGTCTAAATTAAGA
65 AAGAC-AAACATGTTTTCTTATCTAAATTAAGA
337495 TAGACATGTA
Statistics
Matches: 271, Mismatches: 37, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
112 42 0.15
113 117 0.43
114 60 0.22
115 2 0.01
117 12 0.04
118 18 0.07
119 14 0.05
120 6 0.02
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (111 bp):
TCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTAAGACAAACATGTTTTCTTGTCTAAATTA
AGACAAACATGTTTTCTTATCTAAATTAAGACAAACATATTTTCTG
Found at i:343168 original size:11 final size:11
Alignment explanation
Indices: 343152--343187 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
343142 AAAGTTAGTT
343152 ATTTTGCTTTA
1 ATTTTGCTTTA
343163 ATTTTGCTTT-
1 ATTTTGCTTTA
343173 ATTTTGCTTTA
1 ATTTTGCTTTA
343184 ATTT
1 ATTT
343188 ATTTGAGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.17, C:0.08, G:0.08, T:0.67
Consensus pattern (11 bp):
ATTTTGCTTTA
Found at i:343178 original size:10 final size:10
Alignment explanation
Indices: 343150--343183 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
343140 TTAAAGTTAG
343150 TTATTTTGCT
1 TTATTTTGCT
343160 TTAATTTTGCT
1 TT-ATTTTGCT
343171 TTATTTTGCT
1 TTATTTTGCT
343181 TTA
1 TTA
343184 ATTTATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.15, C:0.09, G:0.09, T:0.68
Consensus pattern (10 bp):
TTATTTTGCT
Found at i:346119 original size:16 final size:16
Alignment explanation
Indices: 346098--346129 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
346088 CCAAAAATTA
346098 GATTTTGATTCTTTTG
1 GATTTTGATTCTTTTG
*
346114 GATTTTGATTTTTTTG
1 GATTTTGATTCTTTTG
346130 ATAATTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.03, G:0.19, T:0.66
Consensus pattern (16 bp):
GATTTTGATTCTTTTG
Found at i:346423 original size:12 final size:12
Alignment explanation
Indices: 346406--346432 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
346396 TCCCCAAAAC
346406 ACATGGGCCAAT
1 ACATGGGCCAAT
346418 ACATGGGCCAAT
1 ACATGGGCCAAT
346430 ACA
1 ACA
346433 CAGATACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (12 bp):
ACATGGGCCAAT
Found at i:347621 original size:68 final size:68
Alignment explanation
Indices: 347368--347630 Score: 190
Period size: 68 Copynumber: 3.9 Consensus size: 68
347358 GTTTGGTATA
* * *
347368 ATGAATGCCATAAGATTATGTATATGATGGA-ATTCCATATACCGTATGAGATGATTAAGTAGGC
1 ATGAATGCCATAAGATTATGTATATGATGTATATTCCATATACCTTATGAGATGATTAAGTAAGC
347432 ATG
66 ATG
* * * * * * ** * *
347435 ATGTATAG-TATAAGATTTTATATATGATGTAAATACCATATACAATATGAGGTGATTAAGTATG
1 ATGAAT-GCCATAAGATTATGTATATGATGTATATTCCATATACCTTATGAGATGATTAAGTAAG
347499 CATG
65 CATG
* * * ********** * * *
347503 ATAAATGCCATGAGATAATGNNNNNNNNNNATATTCCATATA-CTACATGAGATGATTGAGAAAG
1 ATGAATGCCATAAGATTATGTATATGATGTATATTCCATATACCT-TATGAGATGATTAAGTAAG
347567 CATG
65 CATG
* * * *
347571 ATGAATGTCATGAGATTATGTATATGACGTATATTCCATATACCTTATGAGATGAGTAAG
1 ATGAATGCCATAAGATTATGTATATGATGTATATTCCATATACCTTATGAGATGATTAAG
347631 CTGGTATGTA
Statistics
Matches: 139, Mismatches: 52, Indels: 9
0.69 0.26 0.05
Matches are distributed among these distances:
67 25 0.18
68 112 0.81
69 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.32
Consensus pattern (68 bp):
ATGAATGCCATAAGATTATGTATATGATGTATATTCCATATACCTTATGAGATGATTAAGTAAGC
ATG
Found at i:353368 original size:29 final size:28
Alignment explanation
Indices: 353336--353467 Score: 86
Period size: 29 Copynumber: 4.5 Consensus size: 28
353326 NNNNNNNNNC
353336 ATGTTTGGTCTTAATTTAGACAATAAAAT
1 ATGTTT-GTCTTAATTTAGACAATAAAAT
** * *
353365 ATGTTCATCTTAATTTAAGATAAGAAAAAT
1 ATGTTTGTCTTAATTT-AGACAA-TAAAAT
* * * * *
353395 ATTTTTAGTCTTAATCTGGACAAGAAAAC
1 ATGTTT-GTCTTAATTTAGACAATAAAAT
* * *
353424 ATATTTTTCTCAATTTAGACAAGATAAAAT
1 ATGTTTGTCTTAATTTAGAC-A-ATAAAAT
*
353454 AT-TTTTTCTTAATT
1 ATGTTTGTCTTAATT
353468 AAAGAAAAGA
Statistics
Matches: 78, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
28 19 0.24
29 31 0.40
30 20 0.26
31 8 0.10
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (28 bp):
ATGTTTGTCTTAATTTAGACAATAAAAT
Found at i:353417 original size:59 final size:58
Alignment explanation
Indices: 353343--353466 Score: 135
Period size: 59 Copynumber: 2.1 Consensus size: 58
353333 NNCATGTTTG
* * * * * *
353343 GTCTTAATTTAGACAATAAAATATGTTCATCTTAATTTAAGATAAGA-AAAATATTTTT
1 GTCTTAATCTAGACAAGAAAACATATTCATCTCAATTT-AGACAAGATAAAATATTTTT
* **
353401 AGTCTTAATCTGGACAAGAAAACATATTTTTCTCAATTTAGACAAGATAAAATATTTTT
1 -GTCTTAATCTAGACAAGAAAACATATTCATCTCAATTTAGACAAGATAAAATATTTTT
353460 -TCTTAAT
1 GTCTTAAT
353467 TAAAGAAAAG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
57 7 0.13
58 7 0.13
59 41 0.75
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (58 bp):
GTCTTAATCTAGACAAGAAAACATATTCATCTCAATTTAGACAAGATAAAATATTTTT
Found at i:353455 original size:28 final size:27
Alignment explanation
Indices: 353344--353467 Score: 106
Period size: 28 Copynumber: 4.3 Consensus size: 27
353334 NCATGTTTGG
* *
353344 TCTTAATTTAGACAA-TAAAATATGTTCA
1 TCTTAATTTAGACAAGAAAAATAT-TT-T
*
353372 TCTTAATTTAAGATAAGAAAAATATTTTT
1 TCTTAATTT-AGACAAGAAAAATA-TTTT
* *
353401 AGTCTTAATCTGGACAAGAAAACATATTTT
1 --TCTTAATTTAGACAAGAAAA-ATATTTT
*
353431 TCTCAATTTAGACAAGATAAAATATTTTT
1 TCTTAATTTAGACAAGA-AAAATA-TTTT
353460 TCTTAATT
1 TCTTAATT
353468 AAAGAAAAGA
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
28 26 0.33
29 19 0.24
30 21 0.27
31 12 0.15
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (27 bp):
TCTTAATTTAGACAAGAAAAATATTTT
Found at i:356694 original size:18 final size:18
Alignment explanation
Indices: 356671--356707 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
356661 GCATTCACTG
*
356671 TTATGTTTTTCAAATCTA
1 TTATGTTCTTCAAATCTA
356689 TTATGTTCTTCAAATCTA
1 TTATGTTCTTCAAATCTA
356707 T
1 T
356708 CTAGACATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.05, T:0.54
Consensus pattern (18 bp):
TTATGTTCTTCAAATCTA
Found at i:359627 original size:12 final size:12
Alignment explanation
Indices: 359610--359634 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
359600 CTTAACTCAC
359610 TTCATCAAGTTA
1 TTCATCAAGTTA
359622 TTCATCAAGTTA
1 TTCATCAAGTTA
359634 T
1 T
359635 AGTTAGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TTCATCAAGTTA
Found at i:361834 original size:23 final size:22
Alignment explanation
Indices: 361800--361842 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
361790 TGATTAAAAT
361800 AATTTCCATATTTTGTAGGAATC
1 AATTTCCATATTTTGT-GGAATC
*
361823 AATTTCCTTATTTTGTGGAA
1 AATTTCCATATTTTGTGGAA
361843 ACTTTCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.47
Consensus pattern (22 bp):
AATTTCCATATTTTGTGGAATC
Found at i:365035 original size:170 final size:171
Alignment explanation
Indices: 364800--365568 Score: 486
Period size: 171 Copynumber: 4.5 Consensus size: 171
364790 AACCTATTAT
* ** * * *
364800 AATTGGATGTTTGCATTGGAAAATGTGAAGTTGATGTCATTCATTAACAAGAAAAGTCAATTTAT
1 AATTGGATGTTTGCATTAGAAAACATGAAGTAGATGCCATCCATTAACAAGAAAAGTCAATTTAT
* * *
364865 AGTCACTTATGCCAT-TAAAG-ATAGGTTACATGCTTTAAATAGTTTTATAATCTTAGAAATGAT
66 AGTCACTTATGCCATGGAAAGCATA-GTTACACGATTTAAATAGTTTTATAATCTTAGAAATGAT
*
364928 TTTATATCAAAATCTTCTTCATTTTTAATTAAACCCGATCAC
130 TTTATATCAAAATCTTCTTCATTTTTAATTAAAACCGATCAC
* * * *
364970 CATTGGATGTTTGCATTAGAAAACATGAAGTAGATGCCATCCATTTAGAAGTAAAGTCAATTTAT
1 AATTGGATGTTTGCATTAGAAAACATGAAGTAGATGCCATCCATTAACAAGAAAAGTCAATTTAT
** * * *
365035 AGTCACTTATGCTGTGGAAAGCCTAGTTACACGATTTAAATGGTTTTATAATCTTATAAATGATT
66 AGTCACTTATGCCATGGAAAGCATAGTTACACGATTTAAATAGTTTTATAATCTTAGAAATGATT
* * * * * *
365100 TTATATCGAAATCTTTTTCATTTTTAGTTAAAACCTATTAT
131 TTATATCAAAATCTTCTTCATTTTTAATTAAAACCGATCAC
* * * * * * * * * *
365141 AATTGGATATTTGCATAAGGAAACATGAATTGGATGCTAGCCATTGACATA-AAAATTCTATTTA
1 AATTGGATGTTTGCATTAGAAAACATGAAGTAGATGCCATCCATTAACA-AGAAAAGTCAATTTA
** ** * * * ** * * *
365205 TAGTCACACATGCCATTCAAAGCCTCGCTAGTC-TTTTAAAATGGTTTTAT-ATCATTATAAATG
65 TAGTCACTTATGCCATGGAAAGCATAGTTACACGATTT-AAATAGTTTTATAATC-TTAGAAATG
* * * * ** * * *
365268 ATATTACATCGAAAT-TTGTTTCCA-TTTTGGTAAAAACCTATCAT
128 ATTTTATATCAAAATCTT-CTT-CATTTTTAATTAAAACCGATCAC
* * * * * ** *
365312 AATTGGATGTTTAC-TTCATG-AAACATGTAGCAGATGCTATCCATTGATGAGAAAAGTCCATTT
1 AATTGGATGTTTGCATT-A-GAAAACATGAAGTAGATGCCATCCATTAACAAGAAAAGTCAATTT
* * * ** ** * * * * * ** *
365375 ATAATCACTCAAT-TCATCAAAAGTTTGGTTACATGCTTTTAATGGTTTTATAATCTTATCAATA
64 ATAGTCACT-TATGCCATGGAAAGCATAGTTACACGATTTAAATAGTTTTATAATCTTAGAAATG
* * ** * *
365439 ATTTTAAATCAAAAT-TGT-TATCGTTTTTTGTTAAAACCTATCAT
128 ATTTTATATCAAAATCT-TCT-TCATTTTTAATTAAAACCGATCAC
* ** * * *
365483 AATTGGATGTTTACATTAGGCAACATGAAG-CGAATGCCATCCATTAAGAAGAAAAGT-ATTTTA
1 AATTGGATGTTTGCATTAGAAAACATGAAGTAG-ATGCCATCCATTAACAAGAAAAGTCAATTTA
* * *
365546 TAGTCACTCATACCATTGAAAGC
65 TAGTCACTTATGCCATGGAAAGC
365569 CTTGTCACTT
Statistics
Matches: 475, Mismatches: 104, Indels: 40
0.77 0.17 0.06
Matches are distributed among these distances:
169 2 0.00
170 100 0.21
171 356 0.75
172 17 0.04
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (171 bp):
AATTGGATGTTTGCATTAGAAAACATGAAGTAGATGCCATCCATTAACAAGAAAAGTCAATTTAT
AGTCACTTATGCCATGGAAAGCATAGTTACACGATTTAAATAGTTTTATAATCTTAGAAATGATT
TTATATCAAAATCTTCTTCATTTTTAATTAAAACCGATCAC
Found at i:366752 original size:172 final size:168
Alignment explanation
Indices: 365761--367002 Score: 732
Period size: 168 Copynumber: 7.3 Consensus size: 168
365751 ATTGAAATTT
* * * * * * *
365761 TTTTTGG-TGAAACCTATCTTACTTGGATGTTTACATTAAGAAATATGAAGCGGATGTCA-CCAT
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAACA-GAAGCAGATGCCATCCAT
* * * * * * * * * *
365824 TCACAAGAAAATTGCATTTATAGTTATTCATGCCAGTGAAA-GCCTTGTTATTTGCTTTAAAAGA
65 TGAAAAAAAAATT--ATTTATAGTCACTCATGCCA-TCAAAGGCCATGTTACTCGCTTTAAATG-
** * * * **
365888 G-GATATAATCTTATAAAT-AATTTCAATACACAAT-TTTTTTG
126 GTTTTATAATCTTATAAATGACTTTAAAT-CAAAATCTTTTTCC
* * * ** * *
365929 TTTCTAGTGAAAACCTATCATAATTGGATGTTTGCATTGGGAAACGCGAAG-TGAATGCCATCCA
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAAC-AGAAGCAG-ATGCCATCCA
* * * * * * * *
365993 TTGAGAAGAAAATTTCATTTATAGTCACTCGTGCCATCAAAAGCCTTATTATTTGCTTTAAATGG
64 TTGA-AAAAAAAATT-ATTTATAGTCACTCATGCCATCAAAGGCCATGTTACTCGCTTTAAATGG
* * * ** * * *
366058 TGTTATAATGTTATAAATGA-TATTAATTTGATATGTTTGTT-G
127 TTTTATAATCTTATAAATGACT-TTAAATCAAAATCTTT-TTCC
* * * * * * * * *
366100 TCTTTGGATGAAACCCATCGTAGTTGGATGTTTGCATTGAGAAACATGTAA-TA-ATTCCA-CCT
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAACA-G-AAGCAGATGCCATCC-
* * * * * * * * * * * *
366162 ATTGACAAATAAGTCCATTTCTAGTAATTCTTGCCAAT-AAATGCCTTGTTACACGCTTTAAATA
63 ATTGAAAAAAAAAT-TATTTATAGTCACTCATGCC-ATCAAAGGCCATGTTACTCGCTTTAAATG
* *
366226 GTTTTATAATCTTATAAATGATTTTAAATCAAAATC-TTTTCA
126 GTTTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
* ** * * * *** *
366268 TTTTT-TTTAAAACCTATCATAATTAAATGTGTACATCAAGAATTGTGAAGCAGATGCCATCTAT
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAA-ACAGAAGCAGATGCCATCCAT
* ** * *** * * * **
366332 TGACAGGAAAAGTTTATTTATAGTCACTAATATAATCAAAAG-CTTCGTTGCTTTCTTTAAAT-G
65 TGA-A-AAAAAAATTATTTATAGTCACTCATGCCATCAAAGGCCAT-GTTACTCGCTTTAAATGG
* * * **
366395 TTGTTATAAAC--AAAAATGATTTTAAATCAAAATCTTTTTTT
127 TT-TTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
* * * * *
366436 TTTTTGG-GAAAACCTATCATAATTGGATGTTTACA-TAAGGAAACGAAAAGTAGATACCATCCA
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAA-GAAAC-AGAAGCAGATGCCATCCA
* * * * *
366499 TTGATAAGAAAAATAATTTATAATCACTTATACCATCAAAGGCCATGTTACTCGCTTTAAATGGT
64 TTGA-AAAAAAAATTATTTATAGTCACTCATGCCATCAAAGGCCATGTTACTCGCTTTAAATGGT
* * *
366564 TTTATAATCATATAAATGACTTTAAATCGAATTCTTTTTCC
128 TTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
* * *
366605 TTTGTGGCTAAAACCTATCATACTTGGATGTTTGCATTAAGAAACATGAAGCAGATGCCATCCAT
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAACA-GAAGCAGATGCCATCCAT
** ** * *
366670 TGAGAAAAAAAAGTCTATTTATAGTCACTCATGCCATTGAAGGTGATTTTACACGCTTTAAATGG
65 TGA-AAAAAAAA-T-TATTTATAGTCACTCATGCCATCAAAGGCCATGTTACTCGCTTTAAATGG
* ** * * **
366735 TTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTTA
127 TTTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
** * * * * *
366777 TTTTTTATTAAAACCTATCATAATTGGATGTTTGCACT--GAAATGAGAAG-TGAATGCCGTCCG
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAA-CAGAAGCAG-ATGCCATCCA
* * * * * * *
366839 TTGACAAGAAAATTTTGTTATAGTCACTCATGCCGTCAAAAGCCATGTTACTTGCATTAAATGGT
64 TTGAAAAAAAAATTAT-TTATAGTCACTCATGCCATCAAAGGCCATGTTACTCGCTTTAAATGGT
*
366904 TTTATAATCTTATAAATGACTTTAGATCAAAATCTTTTTCC
128 TTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
* *
366945 TTTTTGGTTAAAACCTATCACAATTGGATGTTTGCATTGAGAAACATGAAGCAGATGC
1 TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAACA-GAAGCAGATGC
367003 TGTCATGACC
Statistics
Matches: 819, Mismatches: 207, Indels: 94
0.73 0.18 0.08
Matches are distributed among these distances:
166 2 0.00
167 101 0.12
168 195 0.24
169 186 0.23
170 166 0.20
171 57 0.07
172 112 0.14
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (168 bp):
TTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAAACAGAAGCAGATGCCATCCATT
GAAAAAAAAATTATTTATAGTCACTCATGCCATCAAAGGCCATGTTACTCGCTTTAAATGGTTTT
ATAATCTTATAAATGACTTTAAATCAAAATCTTTTTCC
Found at i:369822 original size:171 final size:170
Alignment explanation
Indices: 369407--369957 Score: 416
Period size: 171 Copynumber: 3.2 Consensus size: 170
369397 GAAGGCATTA
* * * * * * * * * * * *
369407 CAGATGTCATCCATTAACAAGAAAAGTCCATTTATAGACACTTATGCCTTTGAAAACCTTGTTTC
1 CAGATGCCATCCATTGACAAGAAAAGTCAATTTACAGTCGCTCATGCCATTGAAACCCATATTAC
* * ** * * * *
369472 TCACCTTAAATAAT-TTGTAATCTTATAAATGATTTTAAATCAAAATAT-TTGTTATTTTTGCTT
66 TTACTTTAAATGGTGTTATAATCTTAAAAATGATTTTAAATCAAAATCTATT-TTGTTTTTGCTT
* * * * ** * *
369535 AAAACCTATTATAATTAGTTGTTTACATCAGGAGACGT-CA-
130 AAAACATATCATAATTGGATGTTTACAT-AACAAACGTGAAG
* * ** * * * * ** ** * *
369575 CATGGATACCATCCCTTGGTAAGAAAACTGC-ATTTATAGTCACTCATGCAATCAAAAGTCTTGT
1 CA--GATGCCATCCATTGACAAGAAAAGT-CAATTTACAGTCGCTCATGCCATTGAAACCCATAT
* * * *
369639 TACTTACTTTAAATGGTGTTGTAATCTTACAAATGATTTTAAATCGAAATGGT-TTTTGTTTTTG
63 TACTTACTTTAAATGGTGTTATAATCTTAAAAATGATTTTAAATCAAAAT-CTATTTTGTTTTTG
* * *
369703 GTTAAAA-TTCATCATAATTGGATGTTTGCAT-ACTGAAACGTGAAG
127 CTTAAAACAT-ATCATAATTGGATGTTTACATAAC--AAACGTGAAG
* * *
369748 CAGATGCCATCTATTGGCAAGAAAATTCAATTTACAGTCGCTCATGCCATTGAAACCCATATTAC
1 CAGATGCCATCCATTGACAAGAAAAGTCAATTTACAGTCGCTCATGCCATTGAAACCCATATTAC
* * *
369813 TTGCTTTAAATGGTTTTATAATCTTAAAAATGATTTTGAATCAAAATCTATTTTGTTTTTGCTTA
66 TTACTTTAAATGGTGTTATAATCTTAAAAATGATTTTAAATCAAAATCTATTTTGTTTTTGCTTA
* *
369878 AAACATATCATAATTGGTTGTTTACATCAACAAATGTGAAG
131 AAACATATCATAATTGGATGTTTACAT-AACAAACGTGAAG
* * *
369919 CGGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTC
1 CAGATGCCATCCATTGACAAGAAAAGTCAATTTACAGTC
369958 ATTTATGTAT
Statistics
Matches: 302, Mismatches: 66, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
168 2 0.01
170 58 0.19
171 233 0.77
172 5 0.02
173 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (170 bp):
CAGATGCCATCCATTGACAAGAAAAGTCAATTTACAGTCGCTCATGCCATTGAAACCCATATTAC
TTACTTTAAATGGTGTTATAATCTTAAAAATGATTTTAAATCAAAATCTATTTTGTTTTTGCTTA
AAACATATCATAATTGGATGTTTACATAACAAACGTGAAG
Found at i:374417 original size:84 final size:84
Alignment explanation
Indices: 374276--374444 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
374266 AGCTAGAATA
* * *
374276 AAAGGCTAACGAAGCCAAAGGGATTCTAGTGAGACATGGAGTCCAATTTGTATGAGCCATAGAGG
1 AAAGGCTAACAAAGCCAAAGGAATTCTAGTGAGACATGGAGTCCAATTTCTATGAGCCATAGAGG
374341 TTGAGAAGAAACTATTTGG
66 TTGAGAAGAAACTATTTGG
374360 AAAGGCTAACAAAGCCAAAGGAATTCTAGTGAGACATGGAGTCCAATTTCTATGAGCCATAGAGG
1 AAAGGCTAACAAAGCCAAAGGAATTCTAGTGAGACATGGAGTCCAATTTCTATGAGCCATAGAGG
*
374425 TTGAGAAGGAACTATTTGG
66 TTGAGAAGAAACTATTTGG
374444 A
1 A
374445 GTCATAGACC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (84 bp):
AAAGGCTAACAAAGCCAAAGGAATTCTAGTGAGACATGGAGTCCAATTTCTATGAGCCATAGAGG
TTGAGAAGAAACTATTTGG
Found at i:378748 original size:344 final size:344
Alignment explanation
Indices: 378121--378801 Score: 1092
Period size: 344 Copynumber: 2.0 Consensus size: 344
378111 GTTATCGTAA
* * *
378121 AAGTATTATGGAAGGGATAATGTAACACCCTCGATCTTAATGTTAGCCACATACAATGCTAGAAT
1 AAGTATTATGGAAAGGATAATGTAACACCCCCAATCTTAATGTTAGCCACATACAATGCTAGAAT
* * *
378186 AGCTTATGGGTTGATGTGACATTAATGTGTATGTTTATGAATTCAAAGAGTGCCTTTGTTCATTG
66 AGCTTATGGGTTGATGTGACATTAATGTGTATGTTTATGAATTCAAAGAATGCCTATGTTAATTG
* * *
378251 AGAGAAATGGTCATGAAATGTATTAGTGTCTGAAAGCTCAAATGATGTTGTACATATGCTTGGCA
131 AGAGAAATGGTCATGAAATGTATGAGTGTCTAAAAGCTCAAATGATGTTGTACATAAGCTTGGCA
* *
378316 CATGAATGGTCTAGTGCATATGTTTGGCACTAAGATGAGTATAATATGTATGCAAAATTATGCCA
196 CATGAATGATATAGTGCATATGTTTGGCACTAAGATGAGTATAATATGTATGCAAAATTATGCCA
* * *
378381 TGTTAATAGAAATGCTATGTGACATAGGGTATGAATGAGATATTGGTGTGTACGATGGGCTTGTC
261 TGTTAATAGAAATGCTATGTGACATAGGGCATGAATGAGATATTGGTCTGTACGATGGGCTTGTA
378446 TATTGATGATATGTGAAAT
326 TATTGATGATATGTGAAAT
378465 AAGTATTATGGAAAGGATAATGTAACACCCCCAATCTTAATGTTAGCCACATACAATGCTAGAAT
1 AAGTATTATGGAAAGGATAATGTAACACCCCCAATCTTAATGTTAGCCACATACAATGCTAGAAT
* *
378530 ATCTTATGGGTTGATGTGACATTAATGTGTATGTTTATGAATTCAAGGAATGCCTATGTTAATTG
66 AGCTTATGGGTTGATGTGACATTAATGTGTATGTTTATGAATTCAAAGAATGCCTATGTTAATTG
* *
378595 AGAGGAATGGTCATGAAATGTATGAGTGTCTAAAAGCTTAAATGATGTTGTACATAAGCTTGGCA
131 AGAGAAATGGTCATGAAATGTATGAGTGTCTAAAAGCTCAAATGATGTTGTACATAAGCTTGGCA
**********
378660 CATGAATGATATAGTGCATATGTTTGGCACTAAGATGAGTATAATATGNNNNNNNNNNTATGCCA
196 CATGAATGATATAGTGCATATGTTTGGCACTAAGATGAGTATAATATGTATGCAAAATTATGCCA
*
378725 TGTTAATAGAAATGCTATGTGACATAGGGCATGAATGAGATATTGGTCTGTATGATGGGCTTGTA
261 TGTTAATAGAAATGCTATGTGACATAGGGCATGAATGAGATATTGGTCTGTACGATGGGCTTGTA
*
378790 TGTTGATGATAT
326 TATTGATGATAT
378802 TTAAAATATG
Statistics
Matches: 307, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
344 307 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.33
Consensus pattern (344 bp):
AAGTATTATGGAAAGGATAATGTAACACCCCCAATCTTAATGTTAGCCACATACAATGCTAGAAT
AGCTTATGGGTTGATGTGACATTAATGTGTATGTTTATGAATTCAAAGAATGCCTATGTTAATTG
AGAGAAATGGTCATGAAATGTATGAGTGTCTAAAAGCTCAAATGATGTTGTACATAAGCTTGGCA
CATGAATGATATAGTGCATATGTTTGGCACTAAGATGAGTATAATATGTATGCAAAATTATGCCA
TGTTAATAGAAATGCTATGTGACATAGGGCATGAATGAGATATTGGTCTGTACGATGGGCTTGTA
TATTGATGATATGTGAAAT
Found at i:381583 original size:28 final size:28
Alignment explanation
Indices: 381551--381724 Score: 127
Period size: 29 Copynumber: 6.0 Consensus size: 28
381541 TGGCACCTTT
381551 AACATGTTTGTCTTAATTTAGACAAGAA
1 AACATGTTTGTCTTAATTTAGACAAGAA
* *
381579 AACATGTTTAGTCTTACTTTAGATAAGAA
1 AACATGTTT-GTCTTAATTTAGACAAGAA
* *
381608 AATATGTTTATCTTAATTTAAGACAAAGAA
1 AACATGTTTGTCTTAATTT-AGAC-AAGAA
* * * *
381638 AATA-GTTTTTCTCCTAATATAGACAAGGA
1 AACATGTTTGTCT--TAATTTAGACAAGAA
* * * *
381667 AGCATATTTGCCTCAATTTAGACAAGATA
1 AACATGTTTGTCTTAATTTAGACAAGA-A
* *
381696 AA-ATTTTTGTGTCTTAATTAAAGACAAGA
1 AACA-TGTT-TGTCTTAATT-TAGACAAGA
381725 GTTGTTTTAA
Statistics
Matches: 114, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
28 29 0.25
29 46 0.40
30 26 0.23
31 13 0.11
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (28 bp):
AACATGTTTGTCTTAATTTAGACAAGAA
Found at i:383284 original size:9 final size:9
Alignment explanation
Indices: 383270--383295 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
383260 GGGAAGAAGA
383270 ACCCAAGCC
1 ACCCAAGCC
383279 ACCCAAGCC
1 ACCCAAGCC
383288 ACCCAAGC
1 ACCCAAGC
383296 GTTTGGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.54, G:0.12, T:0.00
Consensus pattern (9 bp):
ACCCAAGCC
Found at i:401637 original size:68 final size:68
Alignment explanation
Indices: 401514--401682 Score: 205
Period size: 68 Copynumber: 2.5 Consensus size: 68
401504 AAGCTTACTG
** ** * ***
401514 ATCTCATAAGGTATATGGAGAATACATCATATATGTAATCTCATGGCATTTATCATGCATACTTA
1 ATCTCATAAGGTATATGGAGTTTACATCATATACATAATCTCATAGCAAACATCATGCATACTTA
*
401579 ATT
66 ATC
* *
401582 A-CATCATAAGGTATATGGAGTTTACATCATATACATAATCTTATAGTAAACATCATGCATACTT
1 ATC-TCATAAGGTATATGGAGTTTACATCATATACATAATCTCATAGCAAACATCATGCATACTT
401646 AATC
65 AATC
* *
401650 ATCTCATATGGTATATGGAATTTACATCATATA
1 ATCTCATAAGGTATATGGAGTTTACATCATATA
401683 TTTAAATCTT
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
67 1 0.01
68 84 0.98
69 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (68 bp):
ATCTCATAAGGTATATGGAGTTTACATCATATACATAATCTCATAGCAAACATCATGCATACTTA
ATC
Found at i:408391 original size:170 final size:170
Alignment explanation
Indices: 408104--409434 Score: 674
Period size: 170 Copynumber: 7.9 Consensus size: 170
408094 TAACACGCTA
* * * * * *
408104 TTTATAATCTTATAAATGATTTTAGATCCAAATCTTATTT-ATTATTAGTT-TACCCTATCACAA
1 TTTATAATCTTATAAATGACTTTAAATCAAAATCTT-TTTGATTATTGGTTAAAACCTATCACAA
* * * * *
408167 TTAGATGTTTTCATCAAGG-AACGTGAAGCAGATGCCATCCATTGAAAAAAAAAGTCAATTTATT
65 TTGGATGTTTGCAT-TAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTCAATTTATA
* *
408231 GTCACTCATGCCAT-CAACA-TCCTAT-TTACATGCTTTAAATGG
129 GTCACTCATGCCATGCAA-AGT-CT-TGCTACATGCTTTAAATGC
* * *
408273 TCTTATAATTTTATAAATGA-TTTATATGAAAATCTTTTTGATTATTGGTTAAAACCTATCACAA
1 T-TTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACAA
* * * * ****
408337 TCGGATGTTTGCATTGGGAAACATGAAACAGATGCCATCTATTGGCTTAAAAAGTCAATTTATAG
65 TTGGATGTTTGCATTAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTCAATTTATAG
* *
408402 TCACTCATGCCATGTAAAGTCTTGCTACTTGCTTTAAATGC
130 TCACTCATGCCATGCAAAGTCTTGCTACATGCTTTAAATGC
* * * *
408443 TTTCTGAATCTTATAAATGACTTTAAATCAAAATCATTTTTG-TTTTTGGTCAAAACCTATCATA
1 TTTAT-AATCTTATAAATGACTTTAAATCAAAATC-TTTTTGATTATTGGTTAAAACCTATCACA
* ** ** * * * *
408507 ATTGGATGTTTGCTTTAGGAAACGTG-AAGTGAACCCTATCCGA-TGACAAGAACAGTCCATTTA
64 ATTGGATGTTTGCATTAGGAAACGTGAAACAGATGCC-ATCC-ATTGAAAAAAAAAGTCAATTTA
* * * * *
408570 TAGTCACTCATACCATTCAAAG-CTTAG-TAC-TCACTTTTAATGGT
127 TAGTCACTCATGCCATGCAAAGTCTT-GCTACAT-GCTTTAAAT-GC
* * ** * ** * * *
408614 TTTATAATCTTATAAATGATTTTGAATTGAAATGTTTTTCCTTTTTAGTTAAAACCTATCAGAAT
1 TTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACAAT
* * * * ** * * * **
408679 TAGATGTTTACATCAAGAAA--TGCAAAGTTGATGCCATCCATGGACAAGAAAAGTTTATTTATA
66 TGGATGTTTGCATTAGGAAACGTG-AAA-CAGATGCCATCCATTGAAAAAAAAAGTCAATTTATA
* * * * * * *
408742 TTCACTCAAGCAATAG-AAAGCCTTGTTACTTGCTTTAAATGGT
129 GTCACTCATGCCAT-GCAAAGTCTTGCTACATGCTTTAAAT-GC
* * * ** * * * * *
408785 TTTACAATCTTATAAATGATTTTATATTGACATCTTATTCATTTTTGGTT-AAACCTATTACAAT
1 TTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACAAT
* * ** * * * *
408849 TGGATGTTTGAATCAAAAAATGTGAAGCAGATGCCATCCATTGACAACAAAAGTCAATTTATAGT
66 TGGATGTTTGCATTAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTCAATTTATAGT
* * * *
408914 CACTTATGCCATTG-AAAGACTAG-TCACA-CCTTTAAATTG-
131 CACTCATGCCA-TGCAAAGTCTTGCT-ACATGCTTTAAA-TGC
* * ** * * * * *
408953 TCTTATAATCTTATAAATGAAC-TTATATCAAAATATACTTCATTTTTAGTTAAAAGCTATCATA
1 T-TTATAATCTTATAAATG-ACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACA
* * * * * * * * *
409017 ATTGGATGTTTTCATCAGGGAACGTGAAGCTGAGGCCATCCATTGATAAGAAAAGTCTAA-TTGT
64 ATTGGATGTTTGCATTAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTC-AATTTAT
* * * * * * *
409081 AGTCAGTCGTGCCATGGAAAGACTTGTTAC-TCGCTATAAATGGT
128 AGTCACTCATGCCATGCAAAGTCTTGCTACAT-GCTTTAAAT-GC
* * * * * ** * * *
409125 TTTATAATCTTATAAATGATTTTAGA-CTGAAATTTTATTTG-TTTTTGACT-AAA-TTATTATA
1 TTTATAATCTTATAAATGACTTTAAATC-AAAATCTT-TTTGATTATTGGTTAAAACCTATCACA
* * * * * * * * *
409186 ATTAGATGTTGGTATTGGGAAACGTGAAGC-GAATGCGAACCATTGACAAGAAAAGTCAATTTAT
64 ATTGGATGTTTGCATTAGGAAACGTGAAACAG-ATGCCATCCATTGAAAAAAAAAGTCAATTTAT
* * * * *
409250 AGTCACTTATGCCAT-CGAAAG-CCTACT-CACGCGATTTAAATGG
128 AGTCACTCATGCCATGC-AAAGTCTTGCTACATGC--TTTAAATGC
* * * *
409293 TCTTATAAT-TTGATAAATGATTTTATATCAAAATCTTATTCA--A----TTAAAACCTATCACA
1 T-TTATAATCTT-ATAAATGACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACA
* * * * ** *
409351 ATTGCATGCTTT-AATTAGGAAA-ATGAAATAGATGCCATCCATTGATGAGAAAAGTCAATTTAT
64 ATTGGATG-TTTGCATTAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTCAATTTAT
*
409414 AGTCACTCATGCCATTCAAAG
128 AGTCACTCATGCCATGCAAAG
409435 CCTTATTACT
Statistics
Matches: 909, Mismatches: 196, Indels: 119
0.74 0.16 0.10
Matches are distributed among these distances:
163 1 0.00
164 53 0.06
165 21 0.02
166 2 0.00
167 3 0.00
168 18 0.02
169 187 0.21
170 405 0.45
171 206 0.23
172 13 0.01
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (170 bp):
TTTATAATCTTATAAATGACTTTAAATCAAAATCTTTTTGATTATTGGTTAAAACCTATCACAAT
TGGATGTTTGCATTAGGAAACGTGAAACAGATGCCATCCATTGAAAAAAAAAGTCAATTTATAGT
CACTCATGCCATGCAAAGTCTTGCTACATGCTTTAAATGC
Found at i:409027 original size:340 final size:339
Alignment explanation
Indices: 408104--411078 Score: 1461
Period size: 341 Copynumber: 8.8 Consensus size: 339
408094 TAACACGCTA
* * * * *
408104 TTTATAATCTTATAAATGATTTTAGATCCAAATCTTATTTATTATTAGTTTACCCTATCACAATT
1 TTTATAATCTTATAAATGATTTTAGATCGAAATCTTATTTATTTTTGGTTAAACCTATCACAATT
* * * * *
408169 AGATGTTTTCATCAAGGAACGTGAAGCAGATGCCATCCATTGAAAAAAAAAGTCAATTTATTGTC
66 AGATGTTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTATAGTC
* * * ** *
408234 ACTCATGCCA-TCAACATCCTATTTACATGCTTTAAATGGTCTTATAATTTTATAAATG-ATTTA
131 ACTCATGCCATTCAA-AGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAATTTA
* * * * * * * **
408297 TATGAAAATCTTTTTGATTATTGGTTAAAACCTATCACAATCGGATGTTTGCATTGGGAAACATG
195 TATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAGG-AA-ATG
* * * * *
408362 AAA-CAGATGCCATCTATTGG-CTTA-AAAAGTCAATTTATAGTCACTCATGCCATGTAAAGTCT
258 AAAGCTGATGCCATCCA-TGGAC-AAGAAAAGTCTATTTATAGTCACTCATGCCATG-AAAGACT
* *
408424 TGCTACTTGCTTTAAATGCT
320 TGTTACTTGCTTTAAATGGT
* * * * * * *
408444 TTCT-GAATCTTATAAATGACTTTAAATCAAAATCATT-TTTGTTTTTGGTCAAAACCTATCATA
1 TT-TATAATCTTATAAATGATTTTAGATCGAAATC-TTATTTATTTTTGGT-TAAACCTATCACA
* * * * * ** * *
408507 ATTGGATGTTTGCTTTAGGAAACGTGAAG-TGAACCCTATCCGA-TGACAAGAACAGTCCATTTA
63 ATTAGATGTTTGCATCAAGAAACGTGAAGCAGATGCC-ATCC-ATTGACAAGAAAAGTCAATTTA
* * * * * *
408570 TAGTCACTCATACCATTCAAAGCTTAGT-ACTCACTTTTAATGGTTTTATAATCTTATAAATGAT
126 TAGTCACTCATGCCATTCAAAGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAA
** * * * * *
408634 TTTGA-ATTGAAATGTTTTTCCTTTTTAGTTAAAACCTATCAGAATTAGATGTTTACATCAAGAA
191 TTT-ATATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAGGAA
* * * * * *
408698 ATGCAAAGTTGATGCCATCCATGGACAAGAAAAGTTTATTTATATTCACTCAAGCAATAGAAAGC
255 ATG-AAAGCTGATGCCATCCATGGACAAGAAAAGTCTATTTATAGTCACTCATGCCAT-GAAAGA
408763 CTTGTTACTTGCTTTAAATGGT
318 CTTGTTACTTGCTTTAAATGGT
* * * * * *
408785 TTTACAATCTTATAAATGATTTTATATTGACATCTTATTCATTTTTGGTTAAACCTATTACAATT
1 TTTATAATCTTATAAATGATTTTAGATCGAAATCTTATTTATTTTTGGTTAAACCTATCACAATT
* * * * *
408850 GGATGTTTGAATCAAAAAATGTGAAGCAGATGCCATCCATTGACAACAAAAGTCAATTTATAGTC
66 AGATGTTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTATAGTC
* * * * *
408915 ACTTATGCCATTGAAAGACTAGTCACAC-CTTTAAATTGTCTTATAATCTTATAAATGAACTTAT
131 ACTCATGCCATTCAAAGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAATTTAT
** * * * *
408979 ATCAAAATATACTTCATTTTTAGTTAAAAGCTATCATAATTGGATGTTTTCATCAGGGAACGTG-
196 ATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCA-GGAA-ATGA
* * * * * * *
409043 AAGCTGAGGCCATCCATTGATAAGAAAAGTCTAATTGTAGTCAGTCGTGCCATGGAAAGACTTGT
259 AAGCTGATGCCATCCATGGACAAGAAAAGTCTATTTATAGTCACTCATGCCAT-GAAAGACTTGT
* *
409108 TACTCGCTATAAATGGT
323 TACTTGCTTTAAATGGT
* * ** * * *
409125 TTTATAATCTTATAAATGATTTTAGA-CTGAAATTTTATTTGTTTTTGACTAAA-TTATTATAAT
1 TTTATAATCTTATAAATGATTTTAGATC-GAAATCTTATTTATTTTTGGTTAAACCTATCACAAT
* * *** * *
409188 TAGATGTTGGTATTGGGAAACGTGAAGC-GAATGCGAACCATTGACAAGAAAAGTCAATTTATAG
65 TAGATGTTTGCATCAAGAAACGTGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCAATTTATAG
* * * *
409252 TCACTTATGCCA-TCGAAAGCCTACTCACGCGA-TTTAAATGGTCTTATAAT-TTGATAAATGAT
129 TCACTCATGCCATTC-AAAGCCTAGTCACAC-ACTTTAAATGGTCTTATAATCTT-ATAAATGAA
* * * *
409314 TTTATATCAAAATCTTATTCA-----A-TTAAAACCTATCACAATTGCATGCTTTA-ATTAGGAA
191 TTTATATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATG-TTTACATCAGG-A
* ** * *
409372 AATGAAA--TAGATGCCATCCATTGATGAGAAAAGTCAATTTATAGTCACTCATGCCATTCAAAG
254 AATGAAAGCT-GATGCCATCCATGGACAAGAAAAGTCTATTTATAGTCACTCATGCCA-TGAAAG
* * ** *
409435 CCTTATTACTCCCTTTAAATAGT
317 ACTTGTTACTTGCTTTAAATGGT
* * * *
409458 TTCA-AATC--A-AAAT-CTTTT---TCG-----GT-TTTA------GTTAAAACCTATCATAAT
1 TTTATAATCTTATAAATGATTTTAGATCGAAATCTTATTTATTTTTGGTT-AAACCTATCACAAT
* * *** ** * * *
409503 TGGATGTTTGCTTTGGGAAATTTGAAACGGATGCCATCCCA-TGACAAGAAAAGTCCATTTATAG
65 TAGATGTTTGCATCAAGAAACGTGAAGCAGATGCCAT-CCATTGACAAGAAAAGTCAATTTATAG
* * * * * * * * *
409567 TTACTTATGCCA-TCAAAAGCCTAGTTACTCATTTTTAATAG-CTTTATGATCTTATAAACG-AT
129 TCACTCATGCCATTC-AAAGCCTAGTCACACACTTTAAATGGTC-TTATAATCTTATAAATGAAT
* * * * * * *
409629 TTGA-ACTCAAAATGTTTTTC-CTTTTGGGTCAAACCTA-CTATAATTGGATGTTTGCA-CAGAG
192 TT-ATA-TCAAAATATTTTTCATTTTTAGTTAAAACCTATC-ACAATTGGATGTTTACATCAG-G
* * * * *
409690 AAACATG-AAGCGGATGCCATCCATTGACAAGAAAAG-CTAATTTATAATCACTCATACCATTCA
253 -AA-ATGAAAGCTGATGCCATCCATGGACAAGAAAAGTCT-ATTTATAGTCACTCATGCCA-TGA
* * *
409753 AAGCCTTGTTGCATGCTTTAAATGGT
314 AAGACTTGTTACTTGCTTTAAATGGT
* ** * * ** * *
409779 CTTATAATCACATAAATGATTTTATATC-AAAGTCTTCTACATTTTTGGTTAAAACTTATCATAA
1 TTTATAATCTTATAAATGATTTTAGATCGAAA-TCTTATTTATTTTTGGTT-AAACCTATCACAA
* * * * * * *** * * *
409843 TTGGATGTTTGCATCATGGAACCT-ACAACAGTTGTGGTCTATTGA-AGAGAAAAGTCGATATAT
64 TTAGATGTTTGCATCAAGAAACGTGA-AGCAGATGCCATCCATTGACA-AGAAAAGTCAATTTAT
* * ** ** * ** *
409906 AGTCACTTATGCCA-TCAAAAGCC-ATGTTATTCACTTTAAATTATTTTCCAATGTTATAAATG-
127 AGTCACTCATGCCATTC-AAAGCCTA-GTCACACACTTTAAATGGTCTTATAATCTTATAAATGA
* * * ** * ** ** *
409968 ATTTCAAATAAAAATCTTTTTCATTTTTAGTTAAAAAGTATCATAATTGGATGTTT-GTTTTGAC
190 ATTT-ATATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAG-G
** * *
410032 AAATGTAAAGCAAATGCCATCCCAT-TACAAGAACAA-TCCATTTATAGTCACTCATGCCATCGA
253 AAATG-AAAGCTGATGCCAT-CCATGGACAAGAA-AAGTCTATTTATAGTCACTCATGCCAT-GA
* * * *
410095 AAGCCTAAG-TACTTACTTTGAATGGT
314 AAGACT-TGTTACTTGCTTTAAATGGT
* * * * * * * * * *
410121 TTTTTAATCTTATGAATG-CTTTAAATTTGAAAT-GTATTTCCTTTTTAGTTAAAAACTATCATA
1 TTTATAATCTTATAAATGATTTTAGA-TCGAAATCTTATTT-ATTTTTGGTT-AAACCTATCACA
* * * * *
410184 ATTGGATGATTGCATCAAGATACATGAAGCAGATGCCATCCATTGACAA-AAAAGTTAATTTATA
63 ATTAGATGTTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTATA
* * *** ** * *
410248 GTCATTCATGGCA-TCGAAAGCCTAGTTGTATGCTTTAAATGGTCTTCTAATCTTATAAATGATT
128 GTCACTCATGCCATTC-AAAGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAAT
* * * * * *
410312 TTATATCAAAATATTTTTCATTTGTGGTTAAAACCTATCATAATTGGATGTTAAAAT-TGTGAAA
192 TTATATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAG-G-AA
* * *** ** ** * * * *
410376 CATG-AATCGGATATGATCCATTAACGTGAAAAGTCGATTTGTAGTCACTCATGCTATCGAAAGC
255 -ATGAAAGCTGATGCCATCCATGGACAAGAAAAGTCTATTTATAGTCACTCATGCCAT-GAAAGA
410440 CTT-TTACTTGCTTTAAATGGT
318 CTTGTTACTTGCTTTAAATGGT
* * * * * * * * * *
410461 TTTCTAATCTTATATATGATTTCAAATCAAAAATCTTTTTTAGTTTTGTTTAAAACATATCATAA
1 TTTATAATCTTATAAATGATTTTAGATC-GAAATCTTATTTATTTTTGGTT-AAACCTATCACAA
** * * ** * * ** * * *
410526 TCGGTTGCTTT-CTTCTGGAAATGTTAAGCAGATGCCATCTGTTGACAAGAACATTCCATTTATA
64 TTAGATG-TTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTATA
* * * * *
410590 GTCACTCATG-TAATCGAAAGCCTAGTTACTA-ACTTTTAATGGTTTTATAATCTTATAAATG-A
128 GTCACTCATGCCATTC-AAAGCCTAGTCAC-ACACTTTAAATGGTCTTATAATCTTATAAATGAA
* * * * * * **
410652 TTTCAAATCGAAATGTCTTTCCATTTCTT-G-T-AAACCTATCATAATTGGATGTTTGCATTGGG
191 TTT-ATATCAAAATAT-TTTTCATTT-TTAGTTAAAACCTATCACAATTGGATGTTTACATCAGG
* * * * * *
410714 AAACATG-ATG-TGGGTGCCATCCATTGACAATAACAA-TCCATTTATAGTCACTCATACCATCG
253 -AA-ATGAAAGCT-GATGCCATCCATGGACAAGAA-AAGTCTATTTATAGTCACTCATGCCAT-G
* * *
410776 AGAGCCTTGTTACTCGCTTTAAATGGT
313 AAAGACTTGTTACTTGCTTTAAATGGT
* * * * ** * * *
410803 TTTATAATCATATAGATGATTTTAAATTGAAATCTT-TTTCCCTTTTAGTTAAAACTTATCATAA
1 TTTATAATCTTATAAATGATTTTAGATCGAAATCTTATTT-ATTTTTGGTT-AAACCTATCACAA
* * * * * * * * * *
410867 TTGGTTTTTTGCATTAGGAAACGCGAAGTAAATGCCATGCATTGACAAGAAAAGTCCATTTATCA
64 TTAGATGTTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTAT-A
* * * ** ** * ** ** * * * * *
410932 -TCGCTTATACCATGGAAAGAGTTGTTTCTTACTTTAAATGATTTTAGAATGTTATAAATG-TTT
128 GTCACTCATGCCATTCAAAGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAATT
* * * ** *
410995 TCATATCAAAATCTTATTCATTTTTGGTT-AAACCTATCTTAATTGGATGTTTGCATC-GGAAAA
193 T-ATATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAGG-AAA
*
411058 TGTGAAG-TGGATGCCATCCAT
256 TG-AAAGCT-GATGCCATCCAT
411079 TCATAGGAAA
Statistics
Matches: 2034, Mismatches: 473, Indels: 255
0.74 0.17 0.09
Matches are distributed among these distances:
313 1 0.00
314 9 0.00
315 113 0.06
316 6 0.00
319 9 0.00
320 26 0.01
321 69 0.03
322 4 0.00
324 1 0.00
325 5 0.00
326 5 0.00
328 4 0.00
329 6 0.00
330 1 0.00
332 5 0.00
333 69 0.03
334 29 0.01
335 6 0.00
338 2 0.00
339 95 0.05
340 447 0.22
341 805 0.40
342 289 0.14
343 27 0.01
344 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (339 bp):
TTTATAATCTTATAAATGATTTTAGATCGAAATCTTATTTATTTTTGGTTAAACCTATCACAATT
AGATGTTTGCATCAAGAAACGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCAATTTATAGTC
ACTCATGCCATTCAAAGCCTAGTCACACACTTTAAATGGTCTTATAATCTTATAAATGAATTTAT
ATCAAAATATTTTTCATTTTTAGTTAAAACCTATCACAATTGGATGTTTACATCAGGAAATGAAA
GCTGATGCCATCCATGGACAAGAAAAGTCTATTTATAGTCACTCATGCCATGAAAGACTTGTTAC
TTGCTTTAAATGGT
Found at i:409125 original size:511 final size:510
Alignment explanation
Indices: 408104--409428 Score: 1139
Period size: 511 Copynumber: 2.6 Consensus size: 510
408094 TAACACGCTA
* *
408104 TTTATAATCTTATAAATGATTTTAGATCCAAATCTTATTTATTATTAGTTTACCCTATCACAATT
1 TTTATAATCTTATAAATGATTTTAGATCCAAATCTTATTTATTATTAGTTAAACCTATCACAATT
* * ** *
408169 AGATGTTTTCATCAAGGAACGTGAAGCAGATGCCATCCATTGAAAAAAAAAGTCAATTTATTGTC
66 AGATGTTTACATCAAGAAACGCAAAGCAGATGCCATCCATGGAAAAAAAAAGTCAATTTATTGTC
* * * * * *
408234 ACTCATGCCATCAACATCCTATTTACATGCTTTAAATGGTCTTATAATTTTATAAATGATTTATA
131 ACTCAAGCAATCAAAAGCCTATTTACATGCTTTAAATGGTCTTACAATCTTATAAATGATTTATA
* * * ****
408299 TGAAAATCTTTTTGATTATTGGTTAAAACCTATCACAATCGGATGTTTGCATTGGGAAACATGAA
196 TGAAAATCTTATTCATTATTGGTTAAAACCTATCACAATCGGATGTTTGAATCAAAAAACATGAA
* * * * *
408364 ACAGATGCCATCTATTGGCTTAAAAAGTCAATTTATAGTCACTCATGCCATGTAAAGTCTTGCTA
261 ACAGATGCCATCCATTGACTAAAAAAGTCAATTTATAGTCACTCATGCCATGTAAAGACTAGCTA
** * * ** *
408429 CTTGCTTTAAATGCTTTCTGAATCTTATAAATGACTTTAAATCAAAATCATTTTTGTTTTTGGTC
326 CTACCTTTAAATGCTTTATGAATCTTATAAATGACTTTAAATCAAAATCATCTTCATTTTTAGTC
* *
408494 AAAACCTATCATAATTGGATGTTTGCTTTAGGAAACGTGAAGTGAACCCTATCCGATGACAAGAA
391 AAAACCTATCATAATTGGATGTTTGCATCAGGAAACGTGAAGTGAACCCTATCCGATGACAAGAA
* * * * *
408559 CAGTCCATTTATAGTCACTCATACCATTCAAAGCTTAGTACTCACTTTTAATGGT
456 AAGTCCAATTATAGTCACTCATACCATGCAAAGCTTAGTACTCACTATAAATGGT
** * * * *
408614 TTTATAATCTTATAAATGATTTT-GAATTGAAATGTT-TTTCCTTTTTAGTTAAAACCTATCAGA
1 TTTATAATCTTATAAATGATTTTAG-ATCCAAATCTTATTT-ATTATTAGTT-AAACCTATCACA
* ** * * **
408677 ATTAGATGTTTACATCAAGAAATGCAAAGTTGATGCCATCCATGGACAAGAAAAGTTTATTTATA
63 ATTAGATGTTTACATCAAGAAACGCAAAGCAGATGCCATCCATGGAAAAAAAAAGTCAATTTAT-
* *
408742 T-TCACTCAAGCAAT-AGAAAGCCT-TGTTACTTGCTTTAAATGGTTTTACAATCTTATAAATGA
127 TGTCACTCAAGCAATCA-AAAGCCTAT-TTACATGCTTTAAATGGTCTTACAATCTTATAAATGA
* * * *
408804 TTTTATATTG-ACATCTTATTCATTTTTGGTT-AAACCTATTACAATTGGATGTTTGAATCAAAA
190 -TTTATA-TGAAAATCTTATTCATTATTGGTTAAAACCTATCACAATCGGATGTTTGAATCAAAA
** * *
408867 AATGTGAAGCAGATGCCATCCATTGAC-AACAAAAGTCAATTTATAGTCACTTATGCCAT-TGAA
253 AACATGAAACAGATGCCATCCATTGACTAA-AAAAGTCAATTTATAGTCACTCATGCCATGT-AA
*
408930 AGACTAG-TCAC-ACCTTTAAATTG-TCTTAT-AATCTTATAAATGAAC-TTATATCAAAAT-AT
316 AGACTAGCT-ACTACCTTTAAA-TGCT-TTATGAATCTTATAAATG-ACTTTAAATCAAAATCAT
* * * * **
408989 ACTTCATTTTTAGTTAAAAGCTATCATAATTGGATGTTTTCATCAGGGAACGTGAAGCTGAGGCC
377 -CTTCATTTTTAGTCAAAACCTATCATAATTGGATGTTTGCATCAGGAAACGTGAAG-TGAACCC
* * * * * * * *
409054 -ATCC-ATTGATAAGAAAAGTCTAATTGTAGTCAGTCGTGCCATGGAAAGACTT-GTTACTCGCT
440 TATCCGA-TGACAAGAAAAGTCCAATTATAGTCACTCATACCATGCAAAG-CTTAG-TACTCACT
409116 ATAAATGGT
502 ATAAATGGT
* * * * * * * *
409125 TTTATAATCTTATAAATGATTTTAGA-CTGAAATTTTATTTGTT-TTTGACTAAA-TTATTATAA
1 TTTATAATCTTATAAATGATTTTAGATC-CAAATCTTATTTATTATTAG-TTAAACCTATCACAA
*** *** ** * * * * * *
409187 TTAGATGTTGGTATTGGGAAACGTGAAGC-GAATGCGAACCATTGACAAGAAAAGTCAATTTATA
64 TTAGATGTTTACATCAAGAAACGCAAAGCAG-ATGCCATCCATGGAAAAAAAAAGTCAATTTATT
* * * * * * ** * *
409251 GTCACTTATGCCATCGAAAGCCTACTCACGCGATTTAAATGGTCTTATAAT-TTGATAAATGATT
128 GTCACTCAAGCAATCAAAAGCCTATTTACATGCTTTAAATGGTCTTACAATCTT-ATAAATGA-T
* * * * **
409315 TTATATCAAAATCTTATTCA--A----TTAAAACCTATCACAATTGCATGCTTT-AATTAGGAAA
191 TTATATGAAAATCTTATTCATTATTGGTTAAAACCTATCACAATCGGATG-TTTGAATCAAAAAA
* *
409373 -ATGAAATAGATGCCATCCATTGA-TGAGAAAAGTCAATTTATAGTCACTCATGCCAT
255 CATGAAACAGATGCCATCCATTGACT-AAAAAAGTCAATTTATAGTCACTCATGCCAT
409429 TCAAAGCCTT
Statistics
Matches: 657, Mismatches: 125, Indels: 73
0.77 0.15 0.09
Matches are distributed among these distances:
503 50 0.08
504 26 0.04
505 3 0.00
508 4 0.01
509 122 0.19
510 165 0.25
511 257 0.39
512 28 0.04
513 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (510 bp):
TTTATAATCTTATAAATGATTTTAGATCCAAATCTTATTTATTATTAGTTAAACCTATCACAATT
AGATGTTTACATCAAGAAACGCAAAGCAGATGCCATCCATGGAAAAAAAAAGTCAATTTATTGTC
ACTCAAGCAATCAAAAGCCTATTTACATGCTTTAAATGGTCTTACAATCTTATAAATGATTTATA
TGAAAATCTTATTCATTATTGGTTAAAACCTATCACAATCGGATGTTTGAATCAAAAAACATGAA
ACAGATGCCATCCATTGACTAAAAAAGTCAATTTATAGTCACTCATGCCATGTAAAGACTAGCTA
CTACCTTTAAATGCTTTATGAATCTTATAAATGACTTTAAATCAAAATCATCTTCATTTTTAGTC
AAAACCTATCATAATTGGATGTTTGCATCAGGAAACGTGAAGTGAACCCTATCCGATGACAAGAA
AAGTCCAATTATAGTCACTCATACCATGCAAAGCTTAGTACTCACTATAAATGGT
Found at i:410423 original size:512 final size:505
Alignment explanation
Indices: 409457--410870 Score: 1481
Period size: 512 Copynumber: 2.8 Consensus size: 505
409447 CTTTAAATAG
* * * *
409457 TTTCAAATCAAAATCTTTTTCGGTTTTAGTTAAAACCTATCATAATTGGATGTTTGCTTTGGGAA
1 TTTCAAATAAAAATCTTTTTCAGTTTTAGTTAAAA-ATATCATAATTGGATGTTTG-TTTTGGAA
* * * * * *
409522 ATTTGAAA-CGGATGCCATCCCATGACAAGAA-AAGTCCATTTATAGTTACTTATGCCATCAAAA
64 ATGT-AAAGCAGATGCCATCCCATTACAAGAACAA-TCCATTTATAGTCACTCATGCCATCGAAA
* * * * * * * * *
409585 GCCTAGTTACTCATTTTTAATAGCTTTATGATCTTATAAACGATTTGAACTCAAAATGTTTTTCC
127 GCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTT-AAATCGAAATGTATTTCC
*
409650 TTTTGGGTCAAACCTA-CTATAATTGGATGTTTGCA-CAGAGAAACATGAAGCGGATGCCATCCA
191 TTTT-TGT-AAACCTATC-ATAATTGGATGTTTGCATCA-AGAAACATGAAGCGGATGCCATCCA
* * *
409713 TTGACAAGAAAAGCTAATTTATAATCACTCATACCATTC-AAAGCCTTGTTGCATGCTTTAAATG
252 TTGACAAGAAAAGTTAATTTATAGTCACTCATACCA-TCGAAAGCCTTGTTGTATGCTTTAAATG
* * * *
409777 GTCTTATAATCACATAAATGATTTTATATCAAAGTCTTCTACATTTTTGGTTAAAACTTATCATA
316 GTCTTATAATCATATAAATGATTTTATATCAAAATCTTTTTCA-TTTTGGTTAAAACTTATCATA
*** * * * * * *
409842 ATTGGATGTTTGCATCATGGAACCTACAACAGTTGTGGTCTATTGAAGAGAAAAGTCGATATATA
380 ATTGGATGTTAAAATCATGAAACATACAACAGATATGATCCATTGAAGAGAAAAGTCGATATATA
* * *
409907 GTCACTTATGCCATCAAAAGCCATGTTA-TTCACTTTAAATTATTTTCCAATGTTATAAATGA
445 GTCACTCATGCCATCAAAAGCC-TGTTACTT-ACTTTAAATGATTTTCCAATCTTATAAATGA
* *
409969 TTTCAAATAAAAATCTTTTTCATTTTTAGTTAAAAAGTATCATAATTGGATGTTTGTTTTGACAA
1 TTTCAAATAAAAATCTTTTTCAGTTTTAGTTAAAAA-TATCATAATTGGATGTTTGTTTTG-GAA
*
410034 ATGTAAAGCAAATGCCATCCCATTACAAGAACAATCCATTTATAGTCACTCATGCCATCGAAAGC
64 ATGTAAAGCAGATGCCATCCCATTACAAGAACAATCCATTTATAGTCACTCATGCCATCGAAAGC
* * * * * *
410099 CTAAG-TACTTACTTTGAATGGTTTTTTAATCTTATGAATGCTTTAAATTTGAAATGTATTTCCT
129 CT-AGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTAAA-TCGAAATGTATTTCCT
* * * *
410163 TTTTAGTTAAAAACTATCATAATTGGATGATTGCATCAAGATACATGAAGCAGATGCCATCCATT
192 TTTT-G-T-AAACCTATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGGATGCCATCCATT
* ** *
410228 GACAA-AAAAGTTAATTTATAGTCATTCATGGCATCGAAAGCCTAGTTGTATGCTTTAAATGGTC
254 GACAAGAAAAGTTAATTTATAGTCACTCATACCATCGAAAGCCTTGTTGTATGCTTTAAATGGTC
* * * *
410292 TTCTAATCTTATAAATGATTTTATATCAAAATATTTTTCATTTGTGGTTAAAACCTATCATAATT
319 TTATAATCATATAAATGATTTTATATCAAAATCTTTTTCATTT-TGGTTAAAACTTATCATAATT
** * * * * *
410357 GGATGTTAAAATTGTGAAACATGA-ATCGGATATGATCCATT-AACGTGAAAAGTCGATTTGTAG
383 GGATGTTAAAATCATGAAACAT-ACAACAGATATGATCCATTGAA-GAGAAAAGTCGATATATAG
* * * * * * *
410420 TCACTCATGCTATCGAAAGCCTTTTACTTGCTTTAAATGGTTTTCTAATCTTATATATGA
446 TCACTCATGCCATCAAAAGCCTGTTACTTACTTTAAATGATTTTCCAATCTTATAAATGA
* * * * *
410480 TTTCAAATCAAAAATCTTTTTTAGTTTT-GTTTAAAACATATCATAATCGGTTGCTTTCTTCTGG
1 TTTCAAAT-AAAAATCTTTTTCAGTTTTAG-TTAAAA-ATATCATAATTGGATG-TTTGTTTTGG
* ** * **
410544 AAATGTTAAGCAGATGCCAT-CTGTTGACAAGAACATTCCATTTATAGTCACTCATGTAATCGAA
62 AAATGTAAAGCAGATGCCATCCCATT-ACAAGAACAATCCATTTATAGTCACTCATGCCATCGAA
*
410608 AGCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTCAAATCGAAATGTCTTTC
126 AGCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTT-AAATCGAAATGTATTTC
*** * * *
410673 CATTTCTTGTAAACCTATCATAATTGGATGTTTGCATTGGGAAACATGATGTGGGTGCCATCCAT
190 C-TTT-TTGTAAACCTATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGGATGCCATCCAT
* ** *
410738 TGACAATAACAA-TCCATTTATAGTCACTCATACCATCGAGAGCCTTG-T-TACTCGCTTTAAAT
253 TGACAAGAA-AAGTTAATTTATAGTCACTCATACCATCGAAAGCCTTGTTGTA-T-GCTTTAAAT
* * * ** * *
410800 GGTTTTATAATCATATAGATGATTTTAAATTGAAATCTTTTTCCCTTTTAGTTAAAACTTATCAT
315 GGTCTTATAATCATATAAATGATTTTATATCAAAATCTTTTT-CATTTTGGTTAAAACTTATCAT
410865 AATTGG
379 AATTGG
410871 TTTTTTGCAT
Statistics
Matches: 750, Mismatches: 123, Indels: 58
0.81 0.13 0.06
Matches are distributed among these distances:
510 2 0.00
511 112 0.15
512 552 0.74
513 79 0.11
514 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.37
Consensus pattern (505 bp):
TTTCAAATAAAAATCTTTTTCAGTTTTAGTTAAAAATATCATAATTGGATGTTTGTTTTGGAAAT
GTAAAGCAGATGCCATCCCATTACAAGAACAATCCATTTATAGTCACTCATGCCATCGAAAGCCT
AGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTAAATCGAAATGTATTTCCTTTTT
GTAAACCTATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGGATGCCATCCATTGACAAGA
AAAGTTAATTTATAGTCACTCATACCATCGAAAGCCTTGTTGTATGCTTTAAATGGTCTTATAAT
CATATAAATGATTTTATATCAAAATCTTTTTCATTTTGGTTAAAACTTATCATAATTGGATGTTA
AAATCATGAAACATACAACAGATATGATCCATTGAAGAGAAAAGTCGATATATAGTCACTCATGC
CATCAAAAGCCTGTTACTTACTTTAAATGATTTTCCAATCTTATAAATGA
Found at i:410921 original size:512 final size:502
Alignment explanation
Indices: 409457--411079 Score: 1440
Period size: 512 Copynumber: 3.2 Consensus size: 502
409447 CTTTAAATAG
* *
409457 TTTCAAATC-AAAATCTTTTTCGGTTTTAGTTAAAACCTATCATAATTGGATGTTTGCTTTGGGA
1 TTTCAAATCAAAAATCTTTTTCAGTTTTAGTTAAAACATATCATAATTGGATGTTT-CTTT-GGA
* * * * *
409521 AAT-TTGAAACGGATGCCATCCCA-TGACAAGAA-AAGTCCATTTATAGTTACTTATGCCATCAA
64 AATGTT-AAGCAGATGCCAT-CCATTGACAAGAACAA-TCCATTTATAGTCACTCATGCCATCGA
* * * * * * * * *
409583 AAGCCTAGTTACTCATTTTTAATAGCTTTATGATCTTATAAACGATTTGAACTCAAAATGTTTTT
126 AAGCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTT-AAATCGAAATGTATTT
* * *
409648 CCTTTTGGGTCAAACCTA-CTATAATTGGATGTTTGCACAGAGAAACATGAAGCGGATGCCATCC
190 CCTTTT-TGTAAAACCTATC-ATAATTGGATGTTTGCATAGAGAAACATGAAGCGGATGCCATCC
* * *
409712 ATTGACAAGAAAAGCTAATTTATAATCACTCATACCATTC-AAAGCCTTGTTGCATGCTTTAAAT
253 ATTGACAA-AAAATC-AATTTATAGTCACTCATACCA-TCGAAAGCCTTGTTAC-TGCTTTAAAT
* * * * *
409776 GGTCTTATAATCACATAAATGATTTTATATCAAAGTC-TTCTACATTTTTGGTTAAAACTTATCA
314 GGTCTTATAATCATATAAATGATTTTATATTAAAATCTTTTTCCA-TTTTGGTTAAAACTTATCA
* * * ** * *
409840 TAATTGGATGTTTGCATCATGGAACCTACAACAGTTGTGGTCTATTGA-AGAGAAAAGTCGATAT
378 TAATTGGATGTTTGCATTA-GGAAAC-ACGA-AGTAATGATC-ATTGACA-AGAAAAGTCGATTT
* * *
409904 ATAGTCACTTATGCCATCAAAAGCCATGTTATTCACTTTAAATTATTTTCCAATGTTATAAATGA
438 ATAGTCACTCATGCCATCAAAAGCCATGTTATTCACTTTAAATGATTTTCCAATCTTATAAATGA
* * *
409969 TTTCAAAT-AAAAATCTTTTTCATTTTTAGTTAAAA-AGTATCATAATTGGATGTTTGTTTTGAC
1 TTTCAAATCAAAAATCTTTTTCAGTTTTAGTTAAAACA-TATCATAATTGGATGTTT-CTTTG-G
* *
410032 AAATGTAAAGCAAATGCCATCCCATT-ACAAGAACAATCCATTTATAGTCACTCATGCCATCGAA
63 AAATGTTAAGCAGATGCCAT-CCATTGACAAGAACAATCCATTTATAGTCACTCATGCCATCGAA
* * * * * *
410096 AGCCTAAG-TACTTACTTTGAATGGTTTTTTAATCTTATGAATGCTTTAAATTTGAAATGTATTT
127 AGCCT-AGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTAAA-TCGAAATGTATTT
* * * *
410160 CCTTTTTAGTTAAAAACTATCATAATTGGATGATTGCATCA-AGATACATGAAGCAGATGCCATC
190 CCTTTTT-G-TAAAACCTATCATAATTGGATGTTTGCAT-AGAGAAACATGAAGCGGATGCCATC
* * ** *
410224 CATTGACAAAAAAGTTAATTTATAGTCATTCATGGCATCGAAAGCCTAGTTGTA-TGCTTTAAAT
252 CATTGACAAAAAA-TCAATTTATAGTCACTCATACCATCGAAAGCCTTG-T-TACTGCTTTAAAT
* * * * *
410288 GGTCTTCTAATCTTATAAATGATTTTATATCAAAATATTTTT-CATTTGTGGTTAAAACCTATCA
314 GGTCTTATAATCATATAAATGATTTTATATTAAAATCTTTTTCCATTT-TGGTTAAAACTTATCA
*** * * * **
410352 TAATTGGATGTTAAAATT-GTGAAACATGAATCGGATATGATCCATTAACGTGAAAAGTCGATTT
378 TAATTGGATGTTTGCATTAG-GAAACACGAA--GTA-ATGAT-CATTGACAAGAAAAGTCGATTT
* * * * * * * *
410416 GTAGTCACTCATGCTATCGAAAGCC-TTTTACTT-GCTTTAAATGGTTTTCTAATCTTATATATG
438 ATAGTCACTCATGCCATCAAAAGCCATGTTA-TTCACTTTAAATGATTTTCCAATCTTATAAATG
410479 A
502 A
* * *
410480 TTTCAAATCAAAAATCTTTTTTAGTTTT-GTTTAAAACATATCATAATCGGTTGCTTTCTTCTGG
1 TTTCAAATCAAAAATCTTTTTCAGTTTTAG-TTAAAACATATCATAATTGGATG-TTTCTT-TGG
** * **
410544 AAATGTTAAGCAGATGCCATCTGTTGACAAGAACATTCCATTTATAGTCACTCATGTAATCGAAA
63 AAATGTTAAGCAGATGCCATCCATTGACAAGAACAATCCATTTATAGTCACTCATGCCATCGAAA
*
410609 GCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTCAAATCGAAATGTCTTTCC
128 GCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTT-AAATCGAAATGTATTTCC
* * * * *
410674 ATTTCTTGT-AAACCTATCATAATTGGATGTTTGCATTGGGAAACATGATGTGGGTGCCATCCAT
192 -TTT-TTGTAAAACCTATCATAATTGGATGTTTGCATAGAGAAACATGAAGCGGATGCCATCCAT
* *
410738 TGACAATAACAATCCATTTATAGTCACTCATACCATCGAGAGCCTTGTTACTCGCTTTAAATGGT
255 TGACAA-AA-AATCAATTTATAGTCACTCATACCATCGAAAGCCTTGTTACT-GCTTTAAATGGT
* * * * * *
410803 TTTATAATCATATAGATGATTTTAAATTGAAATCTTTTTCCCTTTTAGTTAAAACTTATCATAAT
317 CTTATAATCATATAAATGATTTTATATTAAAATCTTTTTCCATTTTGGTTAAAACTTATCATAAT
* * * *
410868 TGGTTTTTTGCATTAGGAAACGCGAAGTAAATGCCATGCATTGACAAGAAAAGTCCATTTATCA-
382 TGGATGTTTGCATTAGGAAACACGAAGT-AATG--AT-CATTGACAAGAAAAGTCGATTTAT-AG
* * * ** *** * ** * *
410932 TCGCTTATACCATGGAAAGAGTTGTT-TCTTACTTTAAATGATTTTAGAATGTTATAAATGT
442 TCACTCATGCCATCAAAAGCCATGTTAT-TCACTTTAAATGATTTTCCAATCTTATAAATGA
* * * * * * * *
410993 TTTCATATC-AAAATCTTATTCATTTTTGGTT-AAACCTATCTTAATTGGATGTTTGCATCGGAA
1 TTTCAAATCAAAAATCTTTTTCAGTTTTAGTTAAAACATATCATAATTGGATGTTT-CTTTGG-A
* **
411056 AATGTGAAGTGGATGCCATCCATT
64 AATGTTAAGCAGATGCCATCCATT
411080 CATAGGAAAA
Statistics
Matches: 894, Mismatches: 165, Indels: 105
0.77 0.14 0.09
Matches are distributed among these distances:
509 1 0.00
510 14 0.02
511 149 0.17
512 604 0.68
513 121 0.14
514 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (502 bp):
TTTCAAATCAAAAATCTTTTTCAGTTTTAGTTAAAACATATCATAATTGGATGTTTCTTTGGAAA
TGTTAAGCAGATGCCATCCATTGACAAGAACAATCCATTTATAGTCACTCATGCCATCGAAAGCC
TAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGATTTAAATCGAAATGTATTTCCTTTT
TGTAAAACCTATCATAATTGGATGTTTGCATAGAGAAACATGAAGCGGATGCCATCCATTGACAA
AAAATCAATTTATAGTCACTCATACCATCGAAAGCCTTGTTACTGCTTTAAATGGTCTTATAATC
ATATAAATGATTTTATATTAAAATCTTTTTCCATTTTGGTTAAAACTTATCATAATTGGATGTTT
GCATTAGGAAACACGAAGTAATGATCATTGACAAGAAAAGTCGATTTATAGTCACTCATGCCATC
AAAAGCCATGTTATTCACTTTAAATGATTTTCCAATCTTATAAATGA
Found at i:410944 original size:171 final size:170
Alignment explanation
Indices: 409457--411050 Score: 632
Period size: 171 Copynumber: 9.3 Consensus size: 170
409447 CTTTAAATAG
* * ** * *
409457 TTTCAAATCAAAATCTTTTTCGGTTT-TAGTTAAAACCTATCATAATTGGATGTTTGCTTTGGGA
1 TTTCAAATCGAAATCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTAGGA
*** **** * * * *
409521 AATTTGAAACGGATGCCATCCCA-TGACAAGAA-AAGTCCATTTATAGTTACTTATGCCATCAAA
64 AACACGAAGTAAATGCCAT-CCATTGACAAGAACAA-TCCATTTATAGTCACTCATACCATCGAA
* * * * * * * *
409584 AGCCTAGTTACTCATTTTTAATAGCTTTATGATCTTATAAACGA
127 AGCCTAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* * * * * * *
409628 TTTGAACTCAAAATGTTTTTCC-TTT-TGGGTCAAACCTA-CTATAATTGGATGTTTGCA-CAGA
1 TTTCAAATCGAAATCTCTTTCCATTTCT-AGT-AAACCTATC-ATAATTGGATGTTTGCATTAG-
* *** * * *
409689 GAAACATGAAGCGGATGCCATCCATTGACAAGAA-AAGCTAATTTATAATCACTCATACCATTC-
62 GAAACACGAAGTAAATGCCATCCATTGACAAGAACAATC-CATTTATAGTCACTCATACCA-TCG
* * * * *
409752 AAAGCCTTGTTGC-ATGCTTTAAATGGTCTTATAATCACATAAATGA
125 AAAGCCTAGTTACTA-ACTTTAAATGGTTTTATAATCATATAAATGA
* * * * * * * *
409798 TTTTATATC-AAAGTCT-TCTACATTTTTGGTTAAAACTTATCATAATTGGATGTTTGCATCATG
1 TTTCAAATCGAAA-TCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTA-G
* * *** * * * * *
409861 GAACCTACAACAGT---TGTGGTCTATTGA-AGAGAA-AAGTCGATATATAGTCACTTATGCCAT
62 GAAAC-ACGA-AGTAAATGCCATCCATTGACA-AGAACAA-TCCATTTATAGTCACTCATACCAT
* * * ** ** **
409921 CAAAAGCC-ATGTTATTCACTTTAAATTATTTTCCAATGTTATAAATGA
123 CGAAAGCCTA-GTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
** * * ** **
409969 TTTCAAATAAAAATCT-TTTTCATTTTTAGTTAAAAAGTATCATAATTGGATGTTTG--TTTTGA
1 TTTCAAATCGAAATCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTAGGA
* * *
410031 CAA-ATGTAAAGCAAATGCCATCCCATT-ACAAGAACAATCCATTTATAGTCACTCATGCCATCG
64 -AACACG--AAGTAAATGCCAT-CCATTGACAAGAACAATCCATTTATAGTCACTCATACCATCG
* * * * * *
410094 AAAGCCTAAG-TACTTACTTTGAATGGTTTTTTAATCTTATGAATGC
125 AAAGCCT-AGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* * * * * * * *
410140 TTT-AAATTTGAAATGTATTTCC-TTTTTAGTTAAAAACTATCATAATTGGATGATTGCATCAAG
1 TTTCAAA-TCGAAATCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTAGG
* * * * ** * **
410203 ATACATGAAGCAGATGCCATCCATTGACAA-AA-AAGTTAATTTATAGTCATTCATGGCATCGAA
63 AAACACGAAGTAAATGCCATCCATTGACAAGAACAA-TCCATTTATAGTCACTCATACCATCGAA
* * * * *
410266 AGCCTAGTT-GTATGCTTTAAATGGTCTTCTAATCTTATAAATGA
127 AGCCTAGTTACTA-ACTTTAAATGGTTTTATAATCATATAAATGA
* * * * * * * ***
410310 TTTTATATCAAAATAT-TTTTCATTTGTGGTTAAAACCTATCATAATTGGATGTTAAAATT-GTG
1 TTTCAAATCGAAATCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTAG-G
* * * * ** * * * *
410373 AAACATGAATCGGATATG--ATCCATTAACGTGAA-AAGTCGATTTGTAGTCACTCATGCTATCG
63 AAACACGAA--GTAAATGCCATCCATTGACAAGAACAA-TCCATTTATAGTCACTCATACCATCG
* ** * * *
410435 AAAGCCT-TTTACTTGCTTTAAATGGTTTTCTAATCTTATATATGA
125 AAAGCCTAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* ** * * *
410480 TTTCAAATCAAAAATCT-TTTTTAGTTT-T-GTTTAAAACATATCATAATCGGTTGCTTT-C-TT
1 TTTCAAATC-GAAATCTCTTTCCA-TTTCTAG--T-AAACCTATCATAATTGGATG-TTTGCATT
* **** * * ** * ***
410540 CTGGAAATGTTAAGCAGATGCCATCTGTTGACAAGAACATTCCATTTATAGTCACTCATGTAATC
60 -AGGAAACACGAAGTAAATGCCATCCATTGACAAGAACAATCCATTTATAGTCACTCATACCATC
* *
410605 GAAAGCCTAGTTACTAACTTTTAATGGTTTTATAATCTTATAAATGA
124 GAAAGCCTAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* * *
410652 TTTCAAATCGAAATGTCTTTCCATTTCTTGTAAACCTATCATAATTGGATGTTTGCATTGGGAAA
1 TTTCAAATCGAAATCTCTTTCCATTTCTAGTAAACCTATCATAATTGGATGTTTGCATTAGGAAA
* * *** * *
410717 CATGATGTGGGTGCCATCCATTGACAATAACAATCCATTTATAGTCACTCATACCATCGAGAGCC
66 CACGAAGTAAATGCCATCCATTGACAAGAACAATCCATTTATAGTCACTCATACCATCGAAAGCC
* ** *
410782 TTGTTACTCGCTTTAAATGGTTTTATAATCATATAGATGA
131 TAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* * * * * * *
410822 TTTTAAATTGAAATCTTTTTCCCTTT-TAGTTAAAACTTATCATAATTGGTTTTTTGCATTAGGA
1 TTTCAAATCGAAATCTCTTTCCATTTCTAG-T-AAACCTATCATAATTGGATGTTTGCATTAGGA
* * * * *
410886 AACGCGAAGTAAATGCCATGCATTGACAAGAA-AAGTCCATTTATCA-TCGCTTATACCATGGAA
64 AACACGAAGTAAATGCCATCCATTGACAAGAACAA-TCCATTTAT-AGTCACTCATACCATCGAA
** * * * * * ** *
410949 AGAGTTGTTTCTTACTTTAAATGATTTTAGAATGTTATAAATGT
127 AGCCTAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
* * * * *
410993 TTTCATATCAAAATCT-TATT-CATTTTTGGTTAAACCTATCTTAATTGGATGTTTGCAT
1 TTTCAAATCGAAATCTCT-TTCCATTTCTAG-TAAACCTATCATAATTGGATGTTTGCAT
411051 CGGAAAATGT
Statistics
Matches: 1098, Mismatches: 255, Indels: 141
0.73 0.17 0.09
Matches are distributed among these distances:
167 1 0.00
168 4 0.00
169 34 0.03
170 443 0.40
171 520 0.47
172 83 0.08
173 11 0.01
174 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (170 bp):
TTTCAAATCGAAATCTCTTTCCATTTCTAGTAAACCTATCATAATTGGATGTTTGCATTAGGAAA
CACGAAGTAAATGCCATCCATTGACAAGAACAATCCATTTATAGTCACTCATACCATCGAAAGCC
TAGTTACTAACTTTAAATGGTTTTATAATCATATAAATGA
Found at i:412815 original size:80 final size:80
Alignment explanation
Indices: 412636--412907 Score: 334
Period size: 80 Copynumber: 3.4 Consensus size: 80
412626 CTTAATCATT
* * *
412636 GTGTATATGACTATTTTAACACATACATCTCATGGG-ATACATTGCATAACCTCATAAAATCACT
1 GTGTATATGACTATCTCAACACATACATCTCA-GGGCATACATTTCATAACCTCAT-AAATCACT
* *
412700 TACATGCATA-ACTCATA
64 TACATGCTTAGCCT-ATA
*
412717 GTGTATATGACCATCTCAACACATACATCTCAGGGCATACATTTCATAACCTCATAAATCACTTA
1 GTGTATATGACTATCTCAACACATACATCTCAGGGCATACATTTCATAACCTCATAAATCACTTA
412782 CATGCTTAGCCTATA
66 CATGCTTAGCCTATA
** * * *
412797 GTGTATATGACTATCTCAACACATACATCTCATAGCATACATTTAATAAACTCATAAATCATTTA
1 GTGTATATGACTATCTCAACACATACATCTCAGGGCATACATTTCATAACCTCATAAATCACTTA
***
412862 CATGCTTAGCCCGCA
66 CATGCTTAGCCTATA
* * *
412877 ATGTACATGA-TATACTTAACACATACATCTC
1 GTGTATATGACTAT-CTCAACACATACATCTC
412908 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.02
80 118 0.69
81 49 0.29
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (80 bp):
GTGTATATGACTATCTCAACACATACATCTCAGGGCATACATTTCATAACCTCATAAATCACTTA
CATGCTTAGCCTATA
Found at i:414495 original size:31 final size:31
Alignment explanation
Indices: 414452--414562 Score: 114
Period size: 31 Copynumber: 3.6 Consensus size: 31
414442 GATGGTTTGA
* *
414452 CCCCATTGCACCTTGGGCTGGCAATGTACAT
1 CCCCATTACACCTTGGGCTGGCAATGTATAT
** * *
414483 CCCCATTACACCTTAAGTTGACAATGTATAT
1 CCCCATTACACCTTGGGCTGGCAATGTATAT
* * *
414514 CACTATTACACCTTGGGCTGGCAACGTATAT
1 CCCCATTACACCTTGGGCTGGCAATGTATAT
* * *
414545 CCGCATTGCACCATGGGC
1 CCCCATTACACCTTGGGC
414563 ATTTTATGAT
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (31 bp):
CCCCATTACACCTTGGGCTGGCAATGTATAT
Found at i:416223 original size:16 final size:16
Alignment explanation
Indices: 416202--416236 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
416192 GGATTCAATA
*
416202 AAAAAAATCAAAATCT
1 AAAAAAATAAAAATCT
416218 AAAAAAATAAAAATCT
1 AAAAAAATAAAAATCT
416234 AAA
1 AAA
416237 TTTTGCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAAAATAAAAATCT
Found at i:418411 original size:171 final size:167
Alignment explanation
Indices: 417922--418680 Score: 542
Period size: 171 Copynumber: 4.4 Consensus size: 167
417912 TTAAATGATC
* * * * * *
417922 TTATAATCTTATAAATGATTTTATATCGAAA-GCATTTTCATTTTTGGTTAAAACCTATCATAAT
1 TTATAATCTTATAAATGATTTCAAATCAAAATG-TTTTTC-CTTTT-ATTAAAACCTATCATAAT
** ** * * ** * * * * * * *
417986 TGGACATTTGCATTGAG-GAACGTGAAGCCAATGCCATCTATTGATAAGAAAAGTCTAGTTATAC
63 TGGATGTTTGCATCAAGAAAATGTGAAATCGATGCCATCAATTGACAA-AAAAATCCATTTATAG
* * * * * * * *
418050 TCAATCATGCCATGGAAATCCTTGTTACTTACGTTAAATAGTT
127 TCACTAATGACATCGAAAGCCTAGTTA-TTACTTTTAATAG-T
* * * * * * * * * *
418093 TTATAATCTCATAAATGATTTTAGATCGAAATCTTATTCATTTTTTGTTAAACCCATCATAATTG
1 TTATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCCTTTTAT-TAAAACCTATCATAATTG
* ** * * * * * * * * *
418158 GATGTTTCCAT-TGGGAAATGTG-AAGCAGATGCAATCCATGGACAAGAAAATTCAATTCATTGT
65 GATGTTTGCATCAAGAAAATGTGAAATC-GATGCCATCAATTGACAA-AAAAATCCATTTATAGT
* *
418221 CACTCATGCCATCGAAAGCCTAGTTATTAACTTTTAATAGT
128 CACTAATGACATCGAAAGCCTAGTTATT-ACTTTTAATAGT
*
418262 ATTATAATCTTATAAATGATTTCCAATCAAAATGTTTTTCCATTTCTATTAAAACCTATCATAAT
1 -TTATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCC-TTT-TATTAAAACCTATCATAAT
* * ** *
418327 TGGATGTTTGCATCAAG-AAATGTGAAATGGATGCCATCCATTGACAATTGAAGTCCATTTATAG
63 TGGATGTTTGCATCAAGAAAATGTGAAATCGATGCCATCAATTGACAA-AAAAATCCATTTATAG
* * *
418391 TCACTAATGACAAT-GAAAGCCTTGTTACTTACTTTAAATGGTT
127 TCACTAATGAC-ATCGAAAGCCTAGTTA-TTACTTTTAATAG-T
* * * *
418434 TTATAATCTTATAGATGATTTTAAATGAAAATGTTTTTCCTTTTTGGTTAAAACCTATCATAATT
1 TTATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCC-TTTT-ATTAAAACCTATCATAATT
* *** ** *
418499 GGATATTTGCATTGGGAAAATGTGACGTCGATGGCATCAATTGACAAAAAAATCCATTTATAGTC
64 GGATGTTTGCATCAAGAAAATGTGAAATCGATGCCATCAATTGACAAAAAAATCCATTTATAGTC
* * * * *
418564 ACTCATGACATCAAAAGCCTAGTT-TTCCATTTTTATTCGT
129 ACTAATGACATCGAAAGCCTAGTTATT--ACTTTTAATAGT
* *
418604 TTCATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCCTTTTAGTGAAAATCTATCATAATT
1 TT-ATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCCTTTTA-TTAAAACCTATCATAATT
418669 GGATGTTTGCAT
64 GGATGTTTGCAT
418681 TAGGAAACAT
Statistics
Matches: 471, Mismatches: 97, Indels: 41
0.77 0.16 0.07
Matches are distributed among these distances:
169 9 0.02
170 158 0.34
171 269 0.57
172 35 0.07
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (167 bp):
TTATAATCTTATAAATGATTTCAAATCAAAATGTTTTTCCTTTTATTAAAACCTATCATAATTGG
ATGTTTGCATCAAGAAAATGTGAAATCGATGCCATCAATTGACAAAAAAATCCATTTATAGTCAC
TAATGACATCGAAAGCCTAGTTATTACTTTTAATAGT
Done.