Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397281.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_39.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1667509
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.31
Warning! 125079 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:947282 original size:20 final size:20
Alignment explanation
Indices: 947248--947285 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
947238 TCAAATCCAT
947248 AAGAATCAAAATAAAAAATC
1 AAGAATCAAAATAAAAAATC
947268 AAGAA-CAAAATTAAAAAA
1 AAGAATCAAAA-TAAAAAA
947286 GTTTGACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (20 bp):
AAGAATCAAAATAAAAAATC
Found at i:951699 original size:19 final size:18
Alignment explanation
Indices: 951660--951724 Score: 66
Period size: 19 Copynumber: 3.8 Consensus size: 18
951650 CACTAATAAA
951660 TAAAATATTA--TTATTT
1 TAAAATATTATTTTATTT
951676 T--AATATTATTTTATTT
1 TAAAATATTATTTTATTT
*
951692 ATAAAATATTCTTTTATTT
1 -TAAAATATTATTTTATTT
* *
951711 CAAAATATTCTTTT
1 TAAAATATTATTTT
951725 TACTTGTTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 7 0.17
16 7 0.17
17 1 0.02
18 13 0.31
19 14 0.33
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
TAAAATATTATTTTATTT
Found at i:951726 original size:19 final size:19
Alignment explanation
Indices: 951677--951724 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
951667 TTATTATTTT
* *
951677 AATATTATTTTATTTATAA
1 AATATTCTTTTATTTACAA
951696 AATATTCTTTTATTT-CAA
1 AATATTCTTTTATTTACAA
951714 AATATTCTTTT
1 AATATTCTTTT
951725 TACTTGTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (19 bp):
AATATTCTTTTATTTACAA
Found at i:955772 original size:28 final size:28
Alignment explanation
Indices: 955716--955773 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
955706 ATTTCGTCTA
*
955716 TTACTCTATCTAAGCTCTTTCTCTACCT
1 TTACTCTATCTAAGCTCCTTCTCTACCT
* *
955744 TTACTCTATCTAAGCTCCTTGTCTCCCT
1 TTACTCTATCTAAGCTCCTTCTCTACCT
955772 TT
1 TT
955774 CTTCCTCTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.33, G:0.05, T:0.47
Consensus pattern (28 bp):
TTACTCTATCTAAGCTCCTTCTCTACCT
Found at i:959016 original size:28 final size:28
Alignment explanation
Indices: 958919--959061 Score: 90
Period size: 29 Copynumber: 5.0 Consensus size: 28
958909 AAATATTTTA
** * * *
958919 TCTTGTCTAAATTGCGATAAATATGTTT
1 TCTTGTCTAAATTAAGAAAAACATATTT
* * *
958947 TCTTCTCTAGATTAAGACAAAA-AAACTTTT
1 TCTTGTCTAAATTAAGA-AAAACATA--TTT
*
958977 TCTTGTTTTAAATTAAGAAAAACATATTT
1 TCTTG-TCTAAATTAAGAAAAACATATTT
* * * * *
959006 TCTTGTCTAAAGTGATACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-AAAACATATTT
* *
959035 TGTTGTCTAAATTAAGACAAACATATT
1 TCTTGTCTAAATTAAGAAAAACATATT
959062 AAAATTGTCA
Statistics
Matches: 87, Mismatches: 22, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
28 31 0.36
29 33 0.38
30 11 0.13
31 12 0.14
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGAAAAACATATTT
Found at i:960841 original size:170 final size:168
Alignment explanation
Indices: 960187--961363 Score: 638
Period size: 170 Copynumber: 6.9 Consensus size: 168
960177 TAACAAATAC
* *
960187 ATGGCATCCGCTTCACT-TTTCCCAATGCAAACATCCAATTATGATAGTTTTTCACCAAAAACGA
1 ATGGCATCCGCTTCA-TGTTT-CCAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAAC-A
* * * ** *
960251 AAAAGATTTCGA-TTGAAAATCATTTATAAGATTAGAAAACCGTTTAAAGTGAA-TAACATGGCT
63 AAAAGATTTCAATTTG-AAATCATTTATAAGATTATAAAACCATTTAAA-CCAAGTAACAAGGCT
* * * * *
960314 TTCGATGGCATGAGTCACTATAACA-GGAC--TTTTCTT-AGTA
126 TTCAATGGCATAAGTGACTATAA-ATGGACTATTTTGTTAAGAA
* * ** * * ** * *
960354 ATGGATCACATCTGCTTTACATTTCCTAATGTAAAAATCGTATTATGATAGGGTTTAACCAAAAC
1 ATGG----CATCCGCTTCATGTTTCC-AATGCAAACATCCAATTATGATAGGTTTTAACCAAAAA
* ** ** * * *** * **
960419 CAAATACTTTTTGATTT-AGAACCATTTATATA-ATTATAAAACCATTGAAAGTGATTAACATTG
61 CAAAAAGATTTCAATTTGA-AATCATTTATA-AGATTATAAAACCATTTAAACCAAGTAACAAGG
* * * * * * * * * * *
960482 CCTTCGATGTCGTGAGTGACCATAAATAGAGTTTTCTTGTCAATG-G
124 CTTTCAATGGCATAAGTGACTATAAATGGACTATT-TTGTTAA-GAA
* ** * * * * * *
960528 ATGGCATTCATTTTATCTTTCTCAACGCAAACATCGAATTATGATAGGTTTTGACCAAAAATGAA
1 ATGGCATCCGCTTCATGTTTC-CAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAA-CAA
* * * * *
960593 AACGATTTCAA-TTGAAAATCATTTATAA-AGTTATAAAATCATCTAAA-TAGAGTAACATGGCT
64 AAAGATTTCAATTTG-AAATCATTTATAAGA-TTATAAAACCATTTAAACCA-AGTAACAAGGCT
* * * *
960655 TTCGATAGCATAAGTGGCTACAAATGGACTA-TTTGTATCAAGAA
126 TTCAATGGCATAAGTGACTATAAATGGACTATTTTGT-T-AAGAA
* *
960699 ATGGCATCCGCTTCATGTTTGCTAATGCACACATCCAATTATGATAGGTTTTAACCAAAAACAAA
1 ATGGCATCCGCTTCATGTTT-CCAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAACAAA
* * *
960764 AAGATTTCGATTTGAAATCATATATAAGATTAAAAAACCATTTAAACCAAGTAACAAGGCTTTCA
65 AAGATTTCAATTTGAAATCATTTATAAGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTCA
* * *
960829 ATGGCATAAGTGGCTATAAATGGACTATCTAT-TTAAGAG
130 ATGGCATAAGTGACTATAAATGGACTAT-TTTGTTAAGAA
* * ** * * ** * * *
960868 TTGACATTTGTTTCATATTTCTCAATGCAAATGTCCAATTATGATACGTCTTACCCAAAAACAAA
1 ATGGCATCCGCTTCATGTTTC-CAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAAC-AA
** * * * * *** * * *
960933 AAAGATTTTGAGTTGAAATCATATATAAGGTTAGAAAACCATTTAAAGGGAGTAACAATGTTTTT
64 AAAGATTTCAATTTGAAATCATTTATAAGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTC
* * * * *
960998 GATGGCATGAGTGACTATAAATTGACTTTTTTTGTTAATG-G
129 AATGGCATAAGTGACTATAAATGGAC-TATTTTGTTAA-GAA
* * * * ** * *
961039 ATGGGATCCACTTCATGCTTCCAGATGCAAACATCCAATTTTGATAGGTTACAACAAAAAATGAA
1 ATGGCATCCGCTTCATGTTTCCA-ATGCAAACATCCAATTATGATAGGTTTTAACCAAAAA-CAA
* * * * *
961104 TATA-ATTTCAATTTCAAATCATTTATAAGATTATAAAGCCATTTAAAGCGAA-TGACAAGGCGT
64 -AAAGATTTCAATTTGAAATCATTTATAAGATTATAAAACCATTTAAA-CCAAGTAACAAGGC-T
* * **
961167 TT-AATGACATGAA-TGACTATAAATGGACT-TCTCTTGTGAATTA
126 TTCAATGGCAT-AAGTGACTATAAATGGACTAT-T-TTGTTAAGAA
* ** * * *
961210 ATGGTATTAGCTTCATGTTTTCCAAAGAAAACATCCAATTATGATAGGTTTTAAGCAAAAACAAA
1 ATGGCATCCGCTTCATG-TTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAACAAA
** * * * * *
961275 TGGATTTCAATTTAAAATTC-TTTATAACATTATAAAACCATTTAAAGCCAA-TGACAACGTTTT
65 AAGATTTCAATTTGAAA-TCATTTATAAGATTATAAAACCATTTAAA-CCAAGTAACAAGGCTTT
*
961338 CAATGGCATGAGTGAC-ATTAAATGGA
128 CAATGGCATAAGTGACTA-TAAATGGA
961364 ATTTTCCTGT
Statistics
Matches: 771, Mismatches: 188, Indels: 99
0.73 0.18 0.09
Matches are distributed among these distances:
167 4 0.01
168 1 0.00
169 66 0.09
170 345 0.45
171 326 0.42
172 20 0.03
173 3 0.00
174 5 0.01
175 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (168 bp):
ATGGCATCCGCTTCATGTTTCCAATGCAAACATCCAATTATGATAGGTTTTAACCAAAAACAAAA
AGATTTCAATTTGAAATCATTTATAAGATTATAAAACCATTTAAACCAAGTAACAAGGCTTTCAA
TGGCATAAGTGACTATAAATGGACTATTTTGTTAAGAA
Found at i:961149 original size:171 final size:170
Alignment explanation
Indices: 960948--961363 Score: 421
Period size: 171 Copynumber: 2.4 Consensus size: 170
960938 TTTTGAGTTG
* * * * * * * *
960948 AAATCATATATAAGGTTAGAAAACCATTTAAAGGGAGTAACAATGTTTTTGATGGCATGAGTGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAATGACAACGTTTTTAATGGCATGAGTGAC
* * * * * * *
961013 TATAAATTGACTTTTTTTGTTAATGGATGGGATCCA-CTTCATG-CTTCCAGATGCAAACATCCA
66 TATAAATGGACTTCTCTTGTGAATGAATGGGAT-CAGCTTCATGTCTTCCA-AAGAAAACATCCA
* * *
961076 ATTTTGATAGGTTACAA-CAAAAA-ATGAATATAATTTCAATTTC
129 ATTATGATAGGTTACAAGCAAAAACA--AAT-GAATTTCAATTTA
* * ** * *
961119 AAATCATTTATAAGATTATAAAGCCATTTAAAGCGAATGACAAGGCGTTTAATGACATGAATGAC
1 AAATCATTTATAAGATTATAAAACCATTTAAAGCGAATGACAACGTTTTTAATGGCATGAGTGAC
* * * *
961184 TATAAATGGACTTCTCTTGTGAATTAATGGTATTAGCTTCATGTTTTCCAAAGAAAACATCCAAT
66 TATAAATGGACTTCTCTTGTGAATGAATGGGATCAGCTTCATGTCTTCCAAAGAAAACATCCAAT
** *
961249 TATGATAGGTTTTAAGCAAAAACAAATGGATTTCAATTTA
131 TATGATAGGTTACAAGCAAAAACAAATGAATTTCAATTTA
* * *
961289 AAATTC-TTTATAACATTATAAAACCATTTAAAGCCAATGACAACGTTTTCAATGGCATGAGTGA
1 AAA-TCATTTATAAGATTATAAAACCATTTAAAGCGAATGACAACGTTTTTAATGGCATGAGTGA
961353 C-ATTAAATGGA
65 CTA-TAAATGGA
961364 ATTTTCCTGT
Statistics
Matches: 200, Mismatches: 39, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
169 1 0.00
170 72 0.36
171 115 0.57
172 11 0.05
173 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (170 bp):
AAATCATTTATAAGATTATAAAACCATTTAAAGCGAATGACAACGTTTTTAATGGCATGAGTGAC
TATAAATGGACTTCTCTTGTGAATGAATGGGATCAGCTTCATGTCTTCCAAAGAAAACATCCAAT
TATGATAGGTTACAAGCAAAAACAAATGAATTTCAATTTA
Found at i:962897 original size:341 final size:343
Alignment explanation
Indices: 962121--962965 Score: 844
Period size: 341 Copynumber: 2.5 Consensus size: 343
962111 ATGTTTTTTG
* ** * * * * *
962121 ATGCAAACATCCACTTACAATATGTTTAAAGAAAAAAGAAAAATGATTTCAATTTAAAATTATTT
1 ATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAAAAAGATTTCAATTTAAAATCATTT
* * ** * * *
962186 CTAAGAATACAAATTCATTTAAAGCGATTAACAAGGCTTTTGATGGCATAAGTGACTAGAAATGG
66 ATAAGATTACAAAAACATTTAAAGCGAGTAACAAGGCTTTTGATGGCATGAGTGACTATAAATGG
* ** * * * * * * *
962251 AGTTTTATCATCAATGGATGGCATCCATTTCATGCTTTCTGATGCAAACATCGAATTATGACAGG
131 ACTTTTATTGTCAATGGATAGCATCCACTTCACGCTTTCTAAAGCAAACATCCAATTATGAAAGG
* * * * *
962316 TTTTAACTAAAAAGGAAACAACATTTTGATTTGAAATTATTTATAAGGTTATAAAACCATAAAAA
196 TTTTAACTAAAAAGCAAACAAAATTTTGATTTAAAATAATTTATAAGATTATAAAACCATAAAAA
** * * * * * * *
962381 ATGAGTGAGTAAGGTTTTGATGGCATGAATGACTATGAATAGACTGTTCTTTTCTATGGAAGGAC
261 ACAAGTGAATAAGGTTTCGATGGCATCAATAACTATGAATAGACTGTTCTTGTCAATGGAAGGAA
* * *
962446 TCCACTATACATTTCCTA
326 TCCAATAAACAGTTCCTA
* * * ** * ** * *
962464 ATGCAGACATCCAGTTATGATAGGTTTTAACCTGAAACAAAAAAGATTTGGAGTTAAAATCTTTT
1 ATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAAAAAGATTTCAATTTAAAATCATTT
* * * *
962529 ACAAGATTAGAAAAACATATT-AAGCGAGTAACAAGGC-TTTGAATGGCATGACTGAATATAAAT
66 ATAAGATTACAAAAACAT-TTAAAGCGAGTAACAAGGCTTTTG-ATGGCATGAGTGACTATAAAT
* * * *** *
962592 CGACTTTTCTTGTCAATGGATAGTATTTGCTTCACG-TTTCCTAAAGCAAACATCCAATTATTAA
129 GGACTTTTATTGTCAATGGATAGCATCCACTTCACGCTTT-CTAAAGCAAACATCCAATTATGAA
* * **
962656 AGGTTTTAACTAAAAA-CAAATAAAATTTTGATTTAAAATAATTTTTAAGATTAT-AAACCATTT
193 AGGTTTTAACTAAAAAGCAAACAAAATTTTGATTTAAAATAATTTATAAGATTATAAAACCATAA
* * *
962719 AAAGCAAGT-AATAAGGCTTTCGATGGCATCAGTAACTAT-AACTAGACTTTTCTTGTCAATGGA
258 AAAACAAGTGAATAAGG-TTTCGATGGCATCAATAACTATGAA-TAGACTGTTCTTGTCAATGGA
*
962782 TA-GAATCGAATAAACAGTT-CTCA
321 -AGGAATCCAATAAACAGTTCCT-A
* * *
962805 ATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAAAAAAACTTCAATTTAAAATGATTT
1 ATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAAAAAGATTTCAATTTAAAATCATTT
* * * *
962870 ATAAGATTATAAAACCATTTAAAGCGAGTAACATGGCTTTTGATGGCAAGAGTGACTATAAATGG
66 ATAAGATTACAAAAACATTTAAAGCGAGTAACAAGGCTTTTGATGGCATGAGTGACTATAAATGG
* *
962935 ACTTTTATTGTCAATGGAGAGCATCTACTTC
131 ACTTTTATTGTCAATGGATAGCATCCACTTC
962966 CTATTTCTCG
Statistics
Matches: 397, Mismatches: 96, Indels: 20
0.77 0.19 0.04
Matches are distributed among these distances:
340 12 0.03
341 189 0.48
342 43 0.11
343 151 0.38
344 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (343 bp):
ATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAAAAAGATTTCAATTTAAAATCATTT
ATAAGATTACAAAAACATTTAAAGCGAGTAACAAGGCTTTTGATGGCATGAGTGACTATAAATGG
ACTTTTATTGTCAATGGATAGCATCCACTTCACGCTTTCTAAAGCAAACATCCAATTATGAAAGG
TTTTAACTAAAAAGCAAACAAAATTTTGATTTAAAATAATTTATAAGATTATAAAACCATAAAAA
ACAAGTGAATAAGGTTTCGATGGCATCAATAACTATGAATAGACTGTTCTTGTCAATGGAAGGAA
TCCAATAAACAGTTCCTA
Found at i:962982 original size:171 final size:171
Alignment explanation
Indices: 961415--964236 Score: 1611
Period size: 171 Copynumber: 16.6 Consensus size: 171
961405 AGAATTATGA
* * * * * *
961415 ATGGCATCCACTTCAAGTTTC-CTAATGCAAACATCCAATTAAGATCGGCTTTAAG-AAAAAGGA
1 ATGGCATCTACTTCATGTTTCTC-AATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
** * ** *
961478 AAAAGATTTTTATTCAGCATCACTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGAG-TT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAG-GCTT
* * * * * * *
961542 TTGATAGCATGAATGACTATAAATGAACTTTTATTATTAGTGG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * * * *
961585 AGGGCATCCACTTTATGATTCCCAATGCAAATATCCAATTATGGTAGGTGTTAACCAAAAATG-A
1 ATGGCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAA-GAA
* * * * * * * *
961649 ATAACATTTCAATTTGAAATCATTTCTAAGATCATAAAACCATTTAGAGTGAGTAGCAAAGCTTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
** ** ** *
961714 CAATCACATGAGTGACTATAAATAAACTTTTCTTGTTAATGG
130 TGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* **** * ** * **
961756 ATGCCATGGGGTTCATGTTTC-CTAATGCAAATATTGAATTATGATAGGTTTTCAGCAAAACCAA
1 ATGGCATCTACTTCATGTTTCTC-AATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
** * * ** * * *
961820 AGGAGATTTCAATTTAAATTCATTTATAAGCTTATAAAACCATTTAAAACGACTAACATGACTTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
* * * ** *
961885 CGATGGCTTGAGTGACTGTAAAT-GAAATTTCTTGTCAATTG
130 TGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* ** * * ** * * * *
961926 ATAGCATCTGTTTCATGTTGCCCAATGTGAACATCCAATTACGATAGGGTTTCA-CTAAAAACAA
1 ATGGCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGC-AAAAAGAA
* * * * * *
961990 AAAAGATTTCAATTGAAAATTATTTATAACAATATAAAACTATTTAAAGTGAGTAACATGGCTTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
** * * * ** * * **
962055 CAATTGCATAAGTTAGAATAAATGGCCTTTTCTTCTCAACCG
130 TGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* ** * ** * * *
962097 ATGGCAT-TCACTTCATGTTTTTTGATGCAAACATCCACTTACAATATGTTTAAAGAAAAAAGAA
1 ATGGCATCT-ACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
* * * * * ** * *
962161 AAATGATTTCAATTTAAAATTATTTCTAAGAATACAAATTCATTTAAAGCGATTAACAAGGCTTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
* * * * **
962226 TGATGGCATAAGTGACTAGAAATGGAGTTTTATCATCAATGG
130 TGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * *
962268 ATGGCATCCATTTCATGCTTTCT-GATGCAAACATCGAATTATGACAGGTTTTAA-CTAAAAAGG
1 ATGGCATCTACTTCATG-TTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGC-AAAAA-G
* * ** * * * ** * **
962331 AAACAACATTTTGATTTGAAATTATTTATAAGGTTATAAAACCATAAAAAATGAGTGAGTAAGG-
63 AAAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGT-AACAAGGC
* * * * * *
962395 TTTTGATGGCATGAATGACTATGAATAGACTGTTCTTTTCTATGG
127 TTTTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * ** *
962440 AAGG-ACTCCACTATACAT-TTCCT-AATGCAGACATCCAGTTATGATAGGTTTTAACCTGAAAC
1 ATGGCA-TCTACT-T-CATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAG
** * * * * * *
962502 AAAAAAGATTTGGAGTTAAAATCTTTTACAAGATTAGAAAAACATATT-AAGCGAGTAACAAGGC
63 AAAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCAT-TTAAAGTGAGTAACAAGGC
* * *
962566 -TTTGAATGGCATGACTGAATATAAATCGACTTTTCTTGTCAATGG
127 TTTTG-ATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * * * *
962611 ATAGTATTTGCTTCACGTTTC-CTAAAGCAAACATCCAATTATTAAAGGTTTTAA-CTAAAAACA
1 ATGGCATCTACTTCATGTTTCTC-AATGCAAACATCCAATTATGATAGGTTTTAAGC-AAAAAGA
** * * ** *
962674 AATAAA-ATTTTGATTTAAAATAATTTTTAAGATTAT-AAACCATTTAAAGCAAGTAATAAGGCT
64 AA-AAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCT
* * * * *
962737 TTCGATGGCATCAGTAACTATAACTAGACTTTTCTTGTCAATGG
128 TTTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * *
962781 ATAGAATCGAATAAACA-G-TTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGA
1 ATGGCATCTACT--TCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGA
* * * * *
962844 AAAAAAACTTCAATTTAAAATGATTTATAAGATTATAAAACCATTTAAAGCGAGTAACATGGCTT
64 AAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* *
962909 TTGATGGCAAGAGTGACTATAAATGGACTTTTATTGTCAATGG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * **
962952 A-GAGCATCTACTTCCTATTTCTCGATGCAAACATGCAATTATGATAAGATTT---C---ATCAA
1 ATG-GCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
* * * * * * *
963010 AAATGATTTCAATTGAAAATCATTTAAAAGATTACAAAACCACTTAAAGTGAGTAACATGTCTTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTT
* * * * **
963075 AT-ATGGCATGAGTGACTACAAATGGA-TATATCTTATTAAAAG
130 -TGATGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGG
* ** * *
963117 ATGGCATCTGCTTCATGTTTCTTGATTCAAACATCCAATTATGATAGGTTTTAATG-AAAAAGGA
1 ATGGCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAA-GCAAAAAGAA
* * * * * * * *
963181 AAAGGATTT-AGATTTAAAATCTTTTACAAGGTAATAAAATCATTTAAAGTAAGTAATAAGGCTT
65 AAAAGATTTCA-ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* * * * *
963245 TGGATGGCATGAGTGACTTTAAATGAACTTTTATCGTCAATGG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * ** * * *
963288 ATGGCAT-TCACTTCAAGTTTCCCAATGCTAACATCCAATTACAATTGCTTTTAATCAAAAAG--
1 ATGGCATCT-ACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
* ** * * ** **
963350 GAAAGCATTTTGATTTGAAATCATTTATAAGATTATAAAACCA-TAAAAGTTTGTAATTAGGCTT
65 AAAAG-ATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* * * *
963414 TTGATGGCATTAGTGACTATAAATGGACTAGTT-TTCTCAAGGG
129 TTGATGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATGG
* * * * * * * * * * *
963457 ATGGCATCCACTTCATGTTTCTTGAA-GAAAATATCCAACTAAGACAGGATTTAACCAAAATGGA
1 ATGGCATCTACTTCATGTTTC-TCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAA
** * * ** *
963521 AAAAGATTTTGATTTGAAATCATTTATAAGTTTGGAAAACCATTTATAAATGAGTAACAAGGCTT
65 AAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTA-AAGTGAGTAACAAGGCTT
** * * *
963586 TCAATGGCATGAGTGACTATAAAT-AACCTTT-TTGCCTCAATAG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTG--TCAATGG
** * * * **
963629 ATGGCATCCGCTTTCCAT-TTCCT-GATGCAAACATCCAATTATGATAGGTTTAAATAAAAAATG
1 ATGGCATCTAC-TT-CATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAA-G
* * * * * *
963692 -AAAAAGATTTTC-ATATAAAATCATTTATAAAATTATGAGACCATTTTAAA-TCATGTAACTAG
63 AAAAAAGA-TTTCAATTTAAAATCATTTATAAGATTATAAAACCA-TTTAAAGTGA-GTAACAAG
* * * * *
963754 GATTTTGATGGCATGAATGATTTTAAATTGG-CTTTT-TT-T-AATGA
125 GCTTTTGATGGCATGAGTGACTATAAA-TGGACTTTTCTTGTCAATGG
* * * * * * * * *
963798 ATGGCAT-TCGCTTCGTGGTTCCCAATACAAACATCCAATTGTGATAAG-TTTAACCAAAATTG-
1 ATGGCATCT-ACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAA-AGA
* ** * * ** *
963860 AACAAGATTTGGATTTGAAATTATTTA-AAGATTATAAAACCATTTAAAGCAAGTAACAAAGCTT
64 AAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* ** *
963924 TTGATGGCAAGAGTGACTATATGTGGACTTTTATTGTCAATGG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * * * * * * * * **
963967 TTGGTATTTGCTTCATGTTTCTCGATCCAAACAT-CAGTTGTGATAGAG-TTTCA-CTAAAACCA
1 ATGGCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAG-GTTTTAAGC-AAAAAGA
* * ** * * * *
964029 AAAAAGATTTCGATTGAAAATCATTTATAAGATTACCAAATCATTTAAAGAGAGTAAGATGGCTT
64 AAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTT
* * * * * * *
964094 TTGATAGAATGAATGAATATAAATAGACTTTTGTTGTGAATGG
129 TTGATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
** *** * * * * *
964137 ATGTAATCCGGTTCATGTTTGC-CAATCCAAACATCCAATTGTGATAAGTTTTCACCAAAAATGA
1 ATGGCATCTACTTCATGTTT-CTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAA-GA
** *
964201 AAAAAGATTTTGATTGAAAATCATTTATAAGATTAT
64 AAAAAGATTTCAATTTAAAATCATTTATAAGATTAT
964237 GACTGATGAA
Statistics
Matches: 2016, Mismatches: 541, Indels: 188
0.73 0.20 0.07
Matches are distributed among these distances:
164 1 0.00
165 133 0.07
166 39 0.02
167 20 0.01
168 44 0.02
169 196 0.10
170 473 0.23
171 779 0.39
172 298 0.15
173 27 0.01
174 6 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (171 bp):
ATGGCATCTACTTCATGTTTCTCAATGCAAACATCCAATTATGATAGGTTTTAAGCAAAAAGAAA
AAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTT
GATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
Found at i:963150 original size:165 final size:165
Alignment explanation
Indices: 962852--963162 Score: 385
Period size: 165 Copynumber: 1.9 Consensus size: 165
962842 GAAAAAAAAC
* * * * *
962852 TTCAATTTAAAATGATTTATAAGATTATAAAACCATTTAAAGCGAGTAACATGGCTTTTGATGGC
1 TTCAATTGAAAATCATTTAAAAGATTACAAAACCACTTAAAGCGAGTAACATGGCTTTTGATGGC
* * * ** *
962917 AAGAGTGACTATAAATGGACTTTTATTGTCAATGGAGAGCATCTACTTCCTATTTCTCGATGCAA
66 AAGAGTGACTACAAATGGACTTATATTATCAAAAGAGAGCATCTACTTCATATTTCTCGATGCAA
*
962982 ACATGCAATTATGATAAGATTTCATCAAAAATGAT
131 ACATCCAATTATGATAAGATTTCATCAAAAATGAT
* *
963017 TTCAATTGAAAATCATTTAAAAGATTACAAAACCACTTAAAGTGAGTAACATGTCTTTAT-ATGG
1 TTCAATTGAAAATCATTTAAAAGATTACAAAACCACTTAAAGCGAGTAACATGGCTTT-TGATGG
* * * * * * *
963081 CATGAGTGACTACAAATGGA-TATATCTTATTAAAAGATG-GCATCTGCTTCATGTTTCTTGATT
65 CAAGAGTGACTACAAATGGACT-TATATTATCAAAAGA-GAGCATCTACTTCATATTTCTCGATG
963144 CAAACATCCAATTATGATA
128 CAAACATCCAATTATGATA
963163 GGTTTTAATG
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
164 1 0.01
165 119 0.98
166 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (165 bp):
TTCAATTGAAAATCATTTAAAAGATTACAAAACCACTTAAAGCGAGTAACATGGCTTTTGATGGC
AAGAGTGACTACAAATGGACTTATATTATCAAAAGAGAGCATCTACTTCATATTTCTCGATGCAA
ACATCCAATTATGATAAGATTTCATCAAAAATGAT
Found at i:964000 original size:169 final size:170
Alignment explanation
Indices: 963513--964236 Score: 444
Period size: 169 Copynumber: 4.2 Consensus size: 170
963503 GGATTTAACC
* * **
963513 AAAATGGAAAAAGATTTTGATTTG-AAATCATTTATAAGTTTGGAAAACCATTTATAA-ATGAGT
1 AAAAT-GAAAAAGATTTCGA-TTGAAAATCATTTATAAGATTATAAAACCATTTA-AAGA-GAGT
* ** * * * * * * **
963576 AACAAGGCTTTCAATGGCATGAGTGACTATAAATA-ACCTTT-TTGCCTCAATAGATGGCATCCG
62 AACAAAGCTTTTGATAGAATGAATGAATATAAATAGACTTTTATTG--TCAATGGATGTAATCCG
* * * * * **
963639 CTTTCCA--TTT-CCTGATGCAAACATCCAATTATGATAGGTTTAAATAA
125 C-TT-CATGTTTGCC-AATCCAAACATCCAATTGTGATAAGTTT-CACCA
* * * * *
963686 AAAATGAAAAAGATTTTC-ATAT-AAAATCATTTATAAAATTATGAGACCATTTTAAATCA-TGT
1 AAAATGAAAAAGA-TTTCGAT-TGAAAATCATTTATAAGATTATAAAACCA-TTTAAA-GAGAGT
* * * * * * * * * * ** *
963748 AACTAGGATTTTGATGGCATGAATGATTTTAAATTGGCTTTT-TT-T-AATGAATGGCATTCGCT
62 AACAAAGCTTTTGATAGAATGAATGAATATAAATAGACTTTTATTGTCAATGGATGTAATCCGCT
* * * * *
963810 TCGTGGTTCCCAATACAAACATCCAATTGTGATAAGTTTAACCA
127 TCATGTTTGCCAATCCAAACATCCAATTGTGATAAGTTTCACCA
* * * *
963854 AAATTGAACAAGATTTGGATTTG-AAATTATTTA-AAGATTATAAAACCATTTAAAGCA-AGTAA
1 AAAATGAAAAAGATTTCGA-TTGAAAATCATTTATAAGATTATAAAACCATTTAAAG-AGAGTAA
* * * ** * * **
963916 CAAAGCTTTTGATGGCAA-GAGTGACTATATGTGGACTTTTATTGTCAATGGTTGGT-ATTTGCT
64 CAAAGCTTTTGATAG-AATGAATGAATATAAATAGACTTTTATTGTCAATGGAT-GTAATCCGCT
* * *
963979 TCATGTTT-CTCGATCCAAACAT-CAGTTGTGATAGAGTTTCACTA
127 TCATGTTTGC-CAATCCAAACATCCAATTGTGATA-AGTTTCACCA
*** ** * *
964023 AAACCAAAAAAGATTTCGATTGAAAATCATTTATAAGATTACCAAATCATTTAAAGAGAGTAAGA
1 AAAATGAAAAAGATTTCGATTGAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACA
** * * *
964088 TGGCTTTTGATAGAATGAATGAATATAAATAGACTTTTGTTGTGAATGGATGTAATCCGGTTCAT
66 AAGCTTTTGATAGAATGAATGAATATAAATAGACTTTTATTGTCAATGGATGTAATCCGCTTCAT
964153 GTTTGCCAATCCAAACATCCAATTGTGATAAGTTTTCACCA
131 GTTTGCCAATCCAAACATCCAATTGTGATAAG-TTTCACCA
*
964194 AAAATGAAAAAAGATTTTGATTGAAAATCATTTATAAGATTAT
1 AAAATG-AAAAAGATTTCGATTGAAAATCATTTATAAGATTAT
964237 GACTGATGAA
Statistics
Matches: 429, Mismatches: 92, Indels: 61
0.74 0.16 0.10
Matches are distributed among these distances:
166 38 0.09
167 19 0.04
168 42 0.10
169 103 0.24
170 91 0.21
171 22 0.05
172 95 0.22
173 18 0.04
174 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (170 bp):
AAAATGAAAAAGATTTCGATTGAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACA
AAGCTTTTGATAGAATGAATGAATATAAATAGACTTTTATTGTCAATGGATGTAATCCGCTTCAT
GTTTGCCAATCCAAACATCCAATTGTGATAAGTTTCACCA
Found at i:964077 original size:170 final size:172
Alignment explanation
Indices: 963819--964235 Score: 415
Period size: 170 Copynumber: 2.5 Consensus size: 172
963809 TTCGTGGTTC
* * *** * *
963819 CCAATACAAACATCCAATTGTGATAAG-TTTAACC-AAAATTGAACAAGATTTGGATTTG-AAAT
1 CCAATCCAAACATCCAATTGTGATAAGTTTTCACCAAAAACCAAAAAAGATTTCGA-TTGAAAAT
* * * * *
963881 TATTTA-AAGATTATAAAACCATTTAAAGCA-AGTAACAAAGCTTTTGATGGCAA-GAGTGACTA
65 CATTTATAAGATTACAAAACCATTTAAAG-AGAGTAACAAAGCTTTTGATAG-AATGAATGAATA
** * * **
963943 TATGTGGACTTTTATTGTCAATGGTTGGT-ATTTGCTTCATGTTT-
128 TAAATAGACTTTTATTGTCAATGGAT-GTAATCCGCTTCATGTTTG
* * *
963987 CTCGATCCAAACAT-CAGTTGTGATAGAG-TTTCA-CTAAAACCAAAAAAGATTTCGATTGAAAA
1 C-CAATCCAAACATCCAATTGTGATA-AGTTTTCACCAAAAACCAAAAAAGATTTCGATTGAAAA
* * * **
964049 TCATTTATAAGATTACCAAATCATTTAAAGAGAGTAAGATGGCTTTTGATAGAATGAATGAATAT
64 TCATTTATAAGATTACAAAACCATTTAAAGAGAGTAACAAAGCTTTTGATAGAATGAATGAATAT
* * *
964114 AAATAGACTTTTGTTGTGAATGGATGTAATCCGGTTCATGTTTG
129 AAATAGACTTTTATTGTCAATGGATGTAATCCGCTTCATGTTTG
** *
964158 CCAATCCAAACATCCAATTGTGATAAGTTTTCACCAAAAATGAAAAAAGATTTTGATTGAAAATC
1 CCAATCCAAACATCCAATTGTGATAAGTTTTCACCAAAAACCAAAAAAGATTTCGATTGAAAATC
964223 ATTTATAAGATTA
66 ATTTATAAGATTA
964236 TGACTGATGA
Statistics
Matches: 203, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
168 15 0.07
169 45 0.22
170 87 0.43
171 16 0.08
172 40 0.20
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (172 bp):
CCAATCCAAACATCCAATTGTGATAAGTTTTCACCAAAAACCAAAAAAGATTTCGATTGAAAATC
ATTTATAAGATTACAAAACCATTTAAAGAGAGTAACAAAGCTTTTGATAGAATGAATGAATATAA
ATAGACTTTTATTGTCAATGGATGTAATCCGCTTCATGTTTG
Found at i:968814 original size:49 final size:49
Alignment explanation
Indices: 968759--968856 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
968749 ACTTAAAGTA
*
968759 AACATTTTACTCCTTATTTCTTATTAGAATTTCATTGAAATAAAATTTT
1 AACATTTTACTCCTTATTTCTTATTAGAAATTCATTGAAATAAAATTTT
* *
968808 AACATTTTACTTCTTATTTCTTATTATAAATTCATTGAAATAAAATTTT
1 AACATTTTACTCCTTATTTCTTATTAGAAATTCATTGAAATAAAATTTT
968857 CCTTTCTAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (49 bp):
AACATTTTACTCCTTATTTCTTATTAGAAATTCATTGAAATAAAATTTT
Found at i:969297 original size:76 final size:77
Alignment explanation
Indices: 969171--969329 Score: 239
Period size: 76 Copynumber: 2.1 Consensus size: 77
969161 TTTCCCAAAT
* * *
969171 TAAAATACTATCCTTAATTTTAGGAATTTCTTTCAAAGTAGGACACAATTTCCTA-TTTTTATGA
1 TAAAATACTATCCTTAATTTTAGGAATTGCTTTCAAAGTAGAAAACAATTTCCTATTTTTTATGA
*
969235 ATCACTCAAAAC
66 ATCACCCAAAAC
* * *
969247 TAAAATACTATCCTTAATTTTAGGAATTGCTTTTAAAGTAGAAAACAATTTTCTATTTTTTATGG
1 TAAAATACTATCCTTAATTTTAGGAATTGCTTTCAAAGTAGAAAACAATTTCCTATTTTTTATGA
*
969312 ATCACCCAAAAT
66 ATCACCCAAAAC
969324 TAAAAT
1 TAAAAT
969330 CGATCGCATT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
76 50 0.68
77 24 0.32
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.39
Consensus pattern (77 bp):
TAAAATACTATCCTTAATTTTAGGAATTGCTTTCAAAGTAGAAAACAATTTCCTATTTTTTATGA
ATCACCCAAAAC
Found at i:975398 original size:169 final size:168
Alignment explanation
Indices: 975146--975719 Score: 466
Period size: 169 Copynumber: 3.4 Consensus size: 168
975136 GTTTCGACGA
* * * * * * ** *
975146 CATGAGTGACTACAAATGGAATTCTCTTATCAATGGATGGCATTTGCTTCA-AGTTTCTTGATGG
1 CATGAGTGACTATAAATGGACTT-TCTTGTCAATGGATGGCATCTACTTCATATTTTC-CAATGC
* * *
975210 AAACATACAAATATGATCTATTTTTA-CCAAAAGCAAAAACGATTTAATTTAAAATCATTTATAA
64 AAACATACAAATATGATCTATTTTAATCCAAAA-CAAAAA-AAATTAATTTAAAATCATTTATAA
* * * * *
975274 GATTATAAAA-CTATTTAAAGAGAGTAACAATACTTGC-AGTGG
127 GATAATAAAACCAACTTAAA-AGAGTAACAAGACTTGCGA-AGG
*
975316 CAT-AGATGACTATAAATGGACTTTCTTGTTAATGGATGGCATCTACTTCATATTTTCCAATGCA
1 CATGAG-TGACTATAAATGGACTTTCTTGTCAATGGATGGCATCTACTTCATATTTTCCAATGCA
* * ** *
975380 AACATCCAAATTTGATCTATTTTAATTGAAAACAAAAAAAATTAATTTAATATCATTTATAAGAT
65 AACATACAAATATGATCTATTTTAATCCAAAACAAAAAAAATTAATTTAAAATCATTTATAAGAT
* * *
975445 AATAAAACCAACTTAAATGAGTAACAAGGCTTTCGAAGG
130 AATAAAACCAACTTAAAAGAGTAACAAGACTTGCGAAGG
* *
975484 CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATTGCATCTACTTCATGTTTTCCAATG-A
1 CATGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCATCTACTTCATATTTTCCAATGCA
* * * * * * * * ** * *
975548 ACTCATCCAATTATGGT-AAGTTTGAA-CTAAAACATAAAGATTTTGATTTAAAGTCATTTATAA
65 A-ACATACAAATATGATCTA-TTTTAATCCAAAACA-AAAAAAATTAATTTAAAATCATTTATAA
* * * * * *
975611 TATTATAAAACC-ATTTAAAATGAGTAATAAGGA-TTTCAAAGG
127 GATAATAAAACCAACTTAAAA-GAGTAACAA-GACTTGCGAAGG
* * ** * * * *
975653 CATGAGTCACTATAAAAGGACTTTTCTTGTCAATAAATGCCATCTACTTGAGACTTTCCAATGCA
1 CATGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCATCTACTTCATATTTTCCAATGCA
975718 AA
65 AA
975720 TATCCAATTA
Statistics
Matches: 330, Mismatches: 61, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
168 78 0.24
169 222 0.67
170 30 0.09
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (168 bp):
CATGAGTGACTATAAATGGACTTTCTTGTCAATGGATGGCATCTACTTCATATTTTCCAATGCAA
ACATACAAATATGATCTATTTTAATCCAAAACAAAAAAAATTAATTTAAAATCATTTATAAGATA
ATAAAACCAACTTAAAAGAGTAACAAGACTTGCGAAGG
Found at i:975758 original size:169 final size:168
Alignment explanation
Indices: 975235--975939 Score: 431
Period size: 169 Copynumber: 4.2 Consensus size: 168
975225 ATCTATTTTT
* * * * *
975235 ACCAAAAGCAAAAACGATTT-AATTTAAAATCATTTATAAGATTATAAAA-CTATTTAAAGAGAG
1 ACCAAAA-CAAAAA-GATTTCGATTT-AAATCATTTATAAGATAATAAAACCAACTTAAA-TGAG
* * ** * * * *
975298 TAACAA-TACTTGCAGTGGCAT-AGATGACTATAAATGGAC-TTTCTTGTTAATG-GATGGCATC
62 TAACAAGGA-TTTCAAAGGCATGAG-TCACTATAAAAGGACTTTTCTTGTCAATGAAAT-GCATC
** * *
975359 TACTTCATATTTTCCAATGCAAA-CATCCAAATT-TGATCTATTTTAA
124 TACTTCATGCTTTCCAATG-AAATCATCC-AATTATGAT-AAGTTTAA
*** * * *
975405 TTGAAAACAAAAAAAATT-AATTTAATATCATTTATAAGATAATAAAACCAACTTAAATGAGTAA
1 ACCAAAACAAAAAGATTTCGATTTAA-ATCATTTATAAGATAATAAAACCAACTTAAATGAGTAA
* * * * * *
975469 CAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATTGCATCTACTTC
65 CAAGGATTTCAAAGGCATGAGTCACTATAAAAGGACTTTTCTTGTCAATGAAATGCATCTACTTC
* * * *
975534 ATGTTTTCCAATGAACTCATCCAATTATGGTAAGTTTGA
130 ATGCTTTCCAATGAAATCATCCAATTATGATAAGTTTAA
* * * * * *
975573 ACTAAAACATAAAGATTTTGATTTAAAGTCATTTATAATATTATAAAACC-ATTTAAAATGAGTA
1 ACCAAAACAAAAAGATTTCGATTTAAA-TCATTTATAAGATAATAAAACCAACTT-AAATGAGTA
*
975637 ATAAGGATTTCAAAGGCATGAGTCACTATAAAAGGACTTTTCTTGTCAAT-AAATGCCATCTACT
64 ACAAGGATTTCAAAGGCATGAGTCACTATAAAAGGACTTTTCTTGTCAATGAAATG-CATCTACT
* *
975701 TGA-GACTTTCCAATGCAAAT-ATCCAATTACT-ATAGGTTTAA
128 TCATG-CTTTCCAATG-AAATCATCCAATTA-TGATAAGTTTAA
*** * * ** **
975742 ACCAATGGAAAAAGATTTCGATTGAAAATCATTTGTAAGATAATTGAA-C-GGTTGAAAGTGAGT
1 ACCAAAACAAAAAGATTTCGATT-TAAATCATTTATAAGATAATAAAACCAACTT-AAA-TGAGT
* * * * ** * * ** * **
975805 AACCAA-GCTTTCAAAGGTATTAGTGACTATAAATTGACTTTTCTTATCAATGGAGGGCGTCTTT
63 AA-CAAGGATTTCAAAGGCATGAGTCACTATAAAAGGACTTTTCTTGTCAATGAAATGCATCTAC
*
975869 TTCATG-TTTCCCGATGCAAA-CATCCAATTATGATCAAGTTTAA
127 TTCATGCTTT-CCAATG-AAATCATCCAATTATGAT-AAGTTTAA
*** *
975912 GTAAAAATCAAAAAGATTTTGATTTAAA
1 ACCAAAA-CAAAAAGATTTCGATTTAAA
975940 ATAATTATTA
Statistics
Matches: 423, Mismatches: 87, Indels: 50
0.76 0.16 0.09
Matches are distributed among these distances:
167 2 0.00
168 101 0.24
169 277 0.65
170 29 0.07
171 14 0.03
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (168 bp):
ACCAAAACAAAAAGATTTCGATTTAAATCATTTATAAGATAATAAAACCAACTTAAATGAGTAAC
AAGGATTTCAAAGGCATGAGTCACTATAAAAGGACTTTTCTTGTCAATGAAATGCATCTACTTCA
TGCTTTCCAATGAAATCATCCAATTATGATAAGTTTAA
Found at i:980957 original size:168 final size:170
Alignment explanation
Indices: 980589--980969 Score: 409
Period size: 168 Copynumber: 2.3 Consensus size: 170
980579 GGGATTTCAC
* * ** *
980589 ATTTTGATTTCAAATCATTTATAAGATTATAAAACCATTTAAAAAGAGTGATAAGGCTTTCGAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGAAAAAAGGCTTTCGAAG
* * * * * * * *
980654 GCATGAGTGATTATAAGTGGAGTTTTCTTGTCAATGGATGGCTTTATTTCACATTTCTCGATGCA
66 GCATGAGTGATTATAAATGGAGCTTTCTTATCAATGGATGCCTTCACTTCACATTTCCCAATGCA
*
980719 AACATCCAATTATGATCTATTTTAACCAAAAACAAAAATG
131 AACATCCAATTATGATATATTTTAACCAAAAACAAAAATG
* * * *
980759 ATTTTGATTTAATATCATTTCTAA-ATTATAAAATCATTTAAAGCGAGAAAAAAGG-TTGTC-AA
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGAAAAAAGGCTT-TCGAA
*
980821 TGGCATGAGTG-TCTATAAATGGA-CTTTCTTATCAATGGATGACCTTCGCTTCACATTTCCCAA
65 -GGCATGAGTGAT-TATAAATGGAGCTTTCTTATCAATGGATG-CCTTCACTTCACATTTCCCAA
* * ** * *
980884 TGTAAA-ATCCAATTATGATATGTTTTAATGAAAAATGATAAA-G
127 TGCAAACATCCAATTATGATATATTTTAACCAAAAA-CAAAAATG
* * *
980927 ATTTCGATTTAAAATTA-TTATAAGATTATAAAGCCATTTAAAG
1 ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
980970 TGAGTAACAA
Statistics
Matches: 174, Mismatches: 31, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
167 5 0.03
168 78 0.45
169 70 0.40
170 21 0.12
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (170 bp):
ATTTTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGAAAAAAGGCTTTCGAAG
GCATGAGTGATTATAAATGGAGCTTTCTTATCAATGGATGCCTTCACTTCACATTTCCCAATGCA
AACATCCAATTATGATATATTTTAACCAAAAACAAAAATG
Found at i:981903 original size:170 final size:168
Alignment explanation
Indices: 981068--983648 Score: 1030
Period size: 170 Copynumber: 15.3 Consensus size: 168
981058 GGCCTTTGAA
* * *
981068 GGCATGAGTGACTGTAAATAG-ACTTTAATTGTCAATGGATG-GTATGTGCTTCATGTGTTCCAG
1 GGCATGAGTGACTATAAAT-GCACTTTTATTGTCAATGGATGCGTA--TGCTTCATGT-TTCCTG
* * * * * ** * * * *
981131 -TGCAATCATCTAACTATGGTAAGTTTAAACCAAAAAGGGAAAAGATTTTGATTTAAAAACATTT
62 ATGCAAACATCCAAATATGATTA-TTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTT
* *
981195 ATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAT
126 ATAA-ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTC-GAT
* * * * * * * * * ** *
981240 -GCATGAGTAATTATAAACAG-AATTTTCTTGTTAGTGGATG-GCTTTCGCATCACATTT-CTCA
1 GGCATGAGTGACTATAAA-TGCACTTTTATTGTCAATGGATGCG-TAT-GCTTCATGTTTCCT-G
* * * * * ** * *
981301 ATGTAAACATCTAAATATGATCAATTTAAAAAAAAATGTAAAAGATTTCGATTTAAAATTACTTT
62 ATGCAAACATCCAAATATGATTATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAA-T-CTTT
* * * * * *
981366 TCA-GAA-TATAAAACCTTTTAAAGCAAGTAATAAGGTTTTTCAAT
125 T-ATAAATTATAAAACCATTTAAAGCGAGTAACAAGG-CTTTCGAT
* * * * * * *
981410 TGCATTAGTGACCACAAATG-ACCTTTT-TTGATCAATGGATG-GCATCCACTTCATGTTTCTTG
1 GGCATGAGTGACTATAAATGCA-CTTTTATTG-TCAATGGATGCGTAT--GCTTCATGTTTCCTG
** * * * * *
981472 ATGCAAACATTGAAATATGATT-TGCTTTACCCAAAA-GCAACAAAGATTGTGATTTAAAGTCAT
62 ATGCAAACATCCAAATATGATTAT-TTTTACCAAAAATG-AA-AAAGATTTTGATTTAAAATCTT
* * * * *
981535 TTATACGATTATGAAACCATTTAAAGTGAGTAATAAAGCCTTT-GAT
124 TTATA-AATTATAAAACCATTTAAAGCGAGTAA-CAAGGCTTTCGAT
* * * * * * * ** *
981581 GGCATCGA-TGACTATAAATGCACCTTTCTTGTTAGTGAATG-GCTCTGCTTTACATTT-CTCAA
1 GGCAT-GAGTGACTATAAATGCACTTTTATTGTCAATGGATGCG-TATGCTTCATGTTTCCT-GA
* * **
981643 TGCAAACATCCAATTAT-ACTT-TATTTTAGCTCAAA--AAAAA-A-TTTGATTTAAAAT-TATT
63 TGCAAACATCCAAATATGA-TTAT-TTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCT-TT
* * * *
981701 TATAAATTCTAAAACCATTTAAAGCAAGTAACAAGGATTTCAAT
125 TATAAATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * *
981745 GGCATGAGTGACTATAAATGCACTTTTATTGTTAATGGATAGTGTATGCTTCATGTTTCCTAATG
1 GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGGAT-GCGTATGCTTCATGTTTCCTGATG
* * *
981810 CAAACATCCATATATGATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTA
65 CAAACATCCAAATATGAT-TATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTATA
* * *
981875 AATTATACAACCATTTCAAGCGAGTAACAAGGGTTTCGAT
129 AATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * * * * * * * * *
981915 GACATGAGTGACTATAAATGGAATTCTCTTATCAATGGATGGCATTTGCTTCAAGTTTCTTGATG
1 GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGGAT-GCGTATGCTTCATGTTTCCTGATG
* ** ** *** * *
981980 GAAATGTATAAATATGATCTATTTTTACCAAAAGCAAAAAAGATTTTAATTTAAAATCATTTATA
65 CAAACATCCAAATATGAT-TATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTAT-
* * *
982045 AAATTATAAACCCATTTAAAGAGAGTAACAAAGCTTTCGAT
128 AAATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * ** * *
982086 GGTATAAGTGAAAATAAAAG-ACTTTT-TATG-CAAATGGATG-GCATCCGCTTCATGTTT-CTC
1 GGCATGAGTGACTATAAATGCACTTTTAT-TGTC-AATGGATGCGTAT--GCTTCATGTTTCCT-
** * * * * *
982146 GATGCAAACATTGAAATATGATT-TACTTTACCCAAAA-GCAACAAAGATTATGATTTAAAGTCA
61 GATGCAAACATCCAAATATGATTAT-TTTTACCAAAAATG-AA-AAAGATTTTGATTTAAAATCT
* * * *
982209 TTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAAGCTTTTGAT
123 TTTATAA-ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * * * * * * * *
982256 GACTTCG-GTGACTACAAATGCACCTTTCTTGTCAGTGAATGTC-TTTGCTATACAT-TTTCC-A
1 GGCAT-GAGTGACTATAAATGCACTTTTATTGTCAATGGATG-CGTATGCT-T-CATGTTTCCTG
* * ** * * ** * *
982317 ATGCAAACATCCAATTATGTTTTATTTCAACTAAAAAT-AAAAAAAAATTGATTTAAAATCATTC
62 ATGCAAACATCCAAATATG-ATTATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTT
* * *
982381 ATAAATTCTAAAACCATTTAAAGCAAGTAACAAGGATTTCGAT
126 ATAAATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
*
982424 GGCATGAGTGACTATAAATGCACTTTCATTGTCAATGGATAGCGTATGCTTCATGTTTCCTGATG
1 GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGGAT-GCGTATGCTTCATGTTTCCTGATG
* * * * * * * *
982489 CAAACATCCATATATAATATGTTTTTGCCAAAATTTAAAAATATTTTGATTTAAAATCTTTTTTA
65 CAAACATCCAAATATGAT-TATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTATA
* **
982554 AATTATACAACCATTTAAAGCGAGTAACAAGTG-TTTTAAT
129 AATTATAAAACCATTTAAAGCGAGTAACAAG-GCTTTCGAT
** * * * * * * ** *
982594 GATATGAGTGACTATAAATGGAATTCTCTTAG-CAATGGATGGCATTTGCTTCAACTTTCTTGAT
1 GGCATGAGTGACTATAAATGCACTTTTATT-GTCAATGGAT-GCGTATGCTTCATGTTTCCTGAT
* * * *** ** *
982658 GGAAACATACAAATATGATCTATTATTACCAAAAGCAAAAAAGATTTCAATTTAAAATCATTTAT
64 GCAAACATCCAAATATGAT-TATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTAT
* *
982723 AAGATTATAAAACCATTTAAAGAGAGTAACAAAGCTTTCGAT
128 AA-ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* ** * * *
982765 GGCATAAGTGAAAATAAAAT--ACTTTTCA-TG-CAAATGGATG-GCATCCGCTTTATATTTCCT
1 GGCATGAGTGACTAT-AAATGCACTTTT-ATTGTC-AATGGATGCGTAT--GCTTCATGTTTCCT
* * * * * * * *
982825 AATGCAAACATCCAATTATGATTGATTTTAACCAAAAAGGGAAATGATTTTGATTCAAAATCATT
61 GATGCAAACATCCAAATATGATT-ATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTT
* ** * ** * *
982890 TACAAGGCTATAAAAACTATTTAAAGAAAGTAACAAGGCTTTCAAA
125 TATAA-ATTAT-AAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * * * * * * ** * *
982936 GGTATGAG-CAGTTATAGACA-G-ACTTTTCTTATCAATTGATTGCATCCGATTCATGTTT-CTC
1 GGCATGAGTGA-CTATA-A-ATGCACTTTTATTGTCAATGGA-TGCGTATGCTTCATGTTTCCTG
* * * * ** * *
982997 AAGGAAAGA-CCTAATTATGA-TAGGTTTGAACCAAAAA-CAAAAATGATTTCGATTTAAAAT-T
62 ATGCAAACATCC-AAATATGATTA--TTTTTACCAAAAATGAAAAA-GATTTTGATTTAAAATCT
* * * * * **
983058 GCTTATAATATTATAAAATCATTTAAAGTGAGTAATAAGGATTTTAAT
123 -TTTATAA-ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* * * * * * * * * * *
983106 AGTATGAGTGACTACAAATGGACTTTTCTTGTCAGTGGCA-GC-TTTCACTTAATGTTTCTTAAT
1 GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGG-ATGCGTAT-GCTTCATGTTTCCTGAT
* * * ** ** * * * * * *
983169 ACAAACATTCAATTATGA-TAGGTTTGAATTACAATTCAAAAAGAATTTGACTT-AAATCATTTA
64 GCAAACATCCAAATATGATTA--TTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTA
* * *
983232 TAAGACTATAAAACCATTTAAAGC-ATGTAACAAGGCTTACGAA
127 TAA-ATTATAAAACCATTTAAAGCGA-GTAACAAGGCTTTCGAT
* ** * * * * * * *
983275 GGTATTTGTGACTATAAATAG-ATTTTTCTTGTCAATGGATAGC-TTTCGCATCACGTTTCTTAA
1 GGCATGAGTGACTATAAAT-GCACTTTTATTGTCAATGGAT-GCGTAT-GCTTCATGTTTCCTGA
* *** * * * * **
983338 TGTAAATGGCCAATTATGATT-TGTTTCAACAAAAA-GCAAAAGATATTTTGATTTAAAATGATT
63 TGCAAACATCCAAATATGATTAT-TTTTACCAAAAATG-AAAA-AGATTTTGATTTAAAATCTTT
* **
983401 TATAAGATTATAAAACCATTTAAAGCGAGAAACTAA-GCTTTATAT
125 TATAA-ATTATAAAACCATTTAAAGCGAGTAAC-AAGGCTTTCGAT
* * * * * * * * * *
983446 GGCATGAGTCACAATAAACGGACTTTTCTTGTCAATGAATG-GCAT-C--CA--TTTCTTGTTTC
1 GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGGATGCGTATGCTTCATGTTTCCTGATGC
* * * * ** **
983505 ---C-T--AATTAGGATTGATTTTAACTAAAAATGAAAAAGATTTCAATTTAAAATAATTTATAA
66 AAACATCCAAATATGATT-ATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTATAA
* * * ** *
983564 CATTATAAAACCATTTGAAGCAAGTCACAAGGCTTTTAAA
130 -ATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
* *
983604 GGCATGAGTGACTATAAATAG-ACTTTTCTTGTTAATGGATG-GTAT
1 GGCATGAGTGACTATAAAT-GCACTTTTATTGTCAATGGATGCGTAT
983649 CCGCTTTAAA
Statistics
Matches: 1806, Mismatches: 482, Indels: 256
0.71 0.19 0.10
Matches are distributed among these distances:
157 2 0.00
158 97 0.05
159 14 0.01
160 2 0.00
163 8 0.00
164 64 0.04
165 46 0.03
166 17 0.01
167 8 0.00
168 86 0.05
169 172 0.10
170 759 0.42
171 437 0.24
172 87 0.05
173 7 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (168 bp):
GGCATGAGTGACTATAAATGCACTTTTATTGTCAATGGATGCGTATGCTTCATGTTTCCTGATGC
AAACATCCAAATATGATTATTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTATAAA
TTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGAT
Found at i:982741 original size:679 final size:675
Alignment explanation
Indices: 981068--982814 Score: 2250
Period size: 679 Copynumber: 2.6 Consensus size: 675
981058 GGCCTTTGAA
* *
981068 GGCATGAGTGACTGTAAATAG-ACTTTAATTGTCAATGGAT-G-GTATGTGCTTCATGTGTTCC-
1 GGCATGAGTGACTATAAAT-GCACTTTCATTGTCAATGGATAGCGTA--TGCTTCATGT-TTCCT
* * * ** * ** * * * *
981129 AGTGCAATCATCTA-ACTATGGTAAGTTTAAACCAAAAAGGGAAAAGATTTTGATTTAAAAACAT
62 AATGCAAACATCCATA-TATAATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTT
* * * * * *
981193 TTATAAGATTATAAAACCATTTAAAGCAAGTAACAAGGCTTTCAAATG-CATGAGTAATTATAAA
126 TTTTAA-ATTATACAACCATTTAAAGCGAGTAACAAGGGTTTC-AATGACATGAGTGACTATAAA
** * * * * ** *
981257 CAGAATTTTCTT-GTTAGTGGATGGC-TTTCGCATC-ACATTTCTCAATGTAAACAT-CTAAATA
189 TGGAATTCTCTTAG-CAATGGATGGCATTT-GCTTCAAC-TTTCTTGATGGAAACATAC-AAATA
* * ** **** * * *
981318 TGATCAATT-TAAAAAAAAATGTAAAAGATTTCGATTTAAAATTACTTT-TCAGAA-TATAAAAC
250 TGATCTATTATTACCAAAAGCAAAAAAGATTTCAATTTAAAATCA-TTTAT-AAAATTATAAAAC
* * * * * * * ** * * *
981380 CTTTTAAAGCA-AGTAATAAGGTTTTTCAATTGCATTAGTGACCACAAATGACCTTTT-TTG-AT
313 CATTTAAAG-AGAGTAACAAAG-CTTTCGATGGCATAAGTGAAAATAAAAGA-CTTTTCATGCA-
* * *
981442 CAATGGATGGCATCCACTTCATGTTTCTTGATGCAAACATTGAAATATGATTTGCTTTACCCAAA
374 -AATGGATGGCATCCGCTTCATGTTTCTCGATGCAAACATTGAAATATGATTTACTTTACCCAAA
* * *
981507 AGCAACAAAGATTGTGATTTAAAGTCATTTATACGATTATGAAACCATTTAAAGTGAGTAATAAA
438 AGCAACAAAGATTATGATTTAAAGTCATTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAA
* * * *
981572 GCCTTTGATGGCATCGATGACTATAAATGCACCTTTCTTGTTAGTGAATGGCTCTGCTTTACATT
503 GCCTTTGATGACATCGATGACTACAAATGCACCTTTCTTGTCAGTGAATGGCTCTGCTATACATT
* * * * * *
981637 TCTCAATGCAAACATCCAATTATACTTTATTTTAGCTCAAAAAAAAATTTGATTTAAAATTATTT
568 TCTCAATGCAAACATCCAATTATACTTTATTTCAACTAAAAAAAAAAATTGATTTAAAATCATTC
981702 ATAAATTCTAAAACCATTTAAAGCAAGTAACAAGGATTTCAAT
633 ATAAATTCTAAAACCATTTAAAGCAAGTAACAAGGATTTCAAT
* * *
981745 GGCATGAGTGACTATAAATGCACTTTTATTGTTAATGGATAGTGTATGCTTCATGTTTCCTAATG
1 GGCATGAGTGACTATAAATGCACTTTCATTGTCAATGGATAGCGTATGCTTCATGTTTCCTAATG
*
981810 CAAACATCCATATATGATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTA
66 CAAACATCCATATATAATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTA
* *
981875 AATTATACAACCATTTCAAGCGAGTAACAAGGGTTTCGATGACATGAGTGACTATAAATGGAATT
131 AATTATACAACCATTTAAAGCGAGTAACAAGGGTTTCAATGACATGAGTGACTATAAATGGAATT
* * ** * *
981940 CTCTTATCAATGGATGGCATTTGCTTCAAGTTTCTTGATGGAAATGTATAAATATGATCTATTTT
196 CTCTTAGCAATGGATGGCATTTGCTTCAACTTTCTTGATGGAAACATACAAATATGATCTATTAT
* *
982005 TACCAAAAGCAAAAAAGATTTTAATTTAAAATCATTTATAAAATTATAAACCCATTTAAAGAGAG
261 TACCAAAAGCAAAAAAGATTTCAATTTAAAATCATTTATAAAATTATAAAACCATTTAAAGAGAG
* *
982070 TAACAAAGCTTTCGATGGTATAAGTGAAAATAAAAGACTTTTTATGCAAATGGATGGCATCCGCT
326 TAACAAAGCTTTCGATGGCATAAGTGAAAATAAAAGACTTTTCATGCAAATGGATGGCATCCGCT
982135 TCATGTTTCTCGATGCAAACATTGAAATATGATTTACTTTACCCAAAAGCAACAAAGATTATGAT
391 TCATGTTTCTCGATGCAAACATTGAAATATGATTTACTTTACCCAAAAGCAACAAAGATTATGAT
* * *
982200 TTAAAGTCATTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAAGCTTTTGATGACTTCGGT
456 TTAAAGTCATTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAAGCCTTTGATGACATCGAT
* *
982265 GACTACAAATGCACCTTTCTTGTCAGTGAATGTCTTTGCTATACATTT-TCCAATGCAAACATCC
521 GACTACAAATGCACCTTTCTTGTCAGTGAATGGCTCTGCTATACATTTCT-CAATGCAAACATCC
**
982329 AATTATGTTTTATTTCAACTAAAAATAAAAAAAAATTGATTTAAAATCATTCATAAATTCTAAAA
585 AATTATACTTTATTTCAACT---AA-AAAAAAAAATTGATTTAAAATCATTCATAAATTCTAAAA
*
982394 CCATTTAAAGCAAGTAACAAGGATTTCGAT
646 CCATTTAAAGCAAGTAACAAGGATTTCAAT
*
982424 GGCATGAGTGACTATAAATGCACTTTCATTGTCAATGGATAGCGTATGCTTCATGTTTCCTGATG
1 GGCATGAGTGACTATAAATGCACTTTCATTGTCAATGGATAGCGTATGCTTCATGTTTCCTAATG
* * * *
982489 CAAACATCCATATATAATATGTTTTTGCCAAAATTTAAAAATATTTTGATTTAAAATCTTTTTTA
66 CAAACATCCATATATAATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTA
* * *
982554 AATTATACAACCATTTAAAGCGAGTAACAAGTGTTTTAATGATATGAGTGACTATAAATGGAATT
131 AATTATACAACCATTTAAAGCGAGTAACAAGGGTTTCAATGACATGAGTGACTATAAATGGAATT
982619 CTCTTAGCAATGGATGGCATTTGCTTCAACTTTCTTGATGGAAACATACAAATATGATCTATTAT
196 CTCTTAGCAATGGATGGCATTTGCTTCAACTTTCTTGATGGAAACATACAAATATGATCTATTAT
*
982684 TACCAAAAGCAAAAAAGATTTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAG
261 TACCAAAAGCAAAAAAGATTTCAATTTAAAATCATTTATAAAATTATAAAACCATTTAAAGAGAG
*
982749 TAACAAAGCTTTCGATGGCATAAGTGAAAATAAAATACTTTTCATGCAAATGGATGGCATCCGCT
326 TAACAAAGCTTTCGATGGCATAAGTGAAAATAAAAGACTTTTCATGCAAATGGATGGCATCCGCT
982814 T
391 T
982815 TATATTTCCT
Statistics
Matches: 937, Mismatches: 112, Indels: 40
0.86 0.10 0.04
Matches are distributed among these distances:
674 1 0.00
675 218 0.23
676 127 0.14
677 155 0.17
678 3 0.00
679 433 0.46
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (675 bp):
GGCATGAGTGACTATAAATGCACTTTCATTGTCAATGGATAGCGTATGCTTCATGTTTCCTAATG
CAAACATCCATATATAATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTA
AATTATACAACCATTTAAAGCGAGTAACAAGGGTTTCAATGACATGAGTGACTATAAATGGAATT
CTCTTAGCAATGGATGGCATTTGCTTCAACTTTCTTGATGGAAACATACAAATATGATCTATTAT
TACCAAAAGCAAAAAAGATTTCAATTTAAAATCATTTATAAAATTATAAAACCATTTAAAGAGAG
TAACAAAGCTTTCGATGGCATAAGTGAAAATAAAAGACTTTTCATGCAAATGGATGGCATCCGCT
TCATGTTTCTCGATGCAAACATTGAAATATGATTTACTTTACCCAAAAGCAACAAAGATTATGAT
TTAAAGTCATTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAAGCCTTTGATGACATCGAT
GACTACAAATGCACCTTTCTTGTCAGTGAATGGCTCTGCTATACATTTCTCAATGCAAACATCCA
ATTATACTTTATTTCAACTAAAAAAAAAAATTGATTTAAAATCATTCATAAATTCTAAAACCATT
TAAAGCAAGTAACAAGGATTTCAAT
Found at i:982831 original size:509 final size:507
Alignment explanation
Indices: 981688--982862 Score: 1151
Period size: 509 Copynumber: 2.3 Consensus size: 507
981678 AAAAAATTTG
* * * * * *
981688 ATTTAAAATTATTTATAA-ATTCTAAAACCATTTAAAGCA-AGTAACAAGGATTTCAATGGCATG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-AGAGTAACAAAGCTTTCGATGGCATA
* * * * *
981751 AGTG-ACTATAAATGCACTTTT-ATTGTTAATGGATAGTGTATGCTTCATGTTTCCTAATGCAAA
65 AGTGAAATA-AAAT-CACTTTTCA-TG-CAATGGAT-G-GCATGCTTTATATTTCCTAATGCAAA
* * * * ** * **
981814 CATCC-ATATATGATATGTTTTTACCAAAAATGAAAAAGATTTTGATTTAAAATCTTTTTTAAAT
124 CATCCAAT-TATGATTTATTTTAACCAAAAATGAAAAAAAAATTGATTTAAAATCATTCATAAAT
* * * * *
981878 TATACAACCATTTCAAGCGAGTAACAAGGGTTTCGATGACATGAGTGACTATAAATGGAATTCTC
188 TATAAAACCATTTAAAGCAAGTAACAAGGATTTCGATGACATGAGTGACTATAAATGCAATTCTC
* * * * ** * * *
981943 TTATCAATGGATGGCATTTGCTTCAAGTTTCTTGATGGAAATGTATAAATATGATCTATTTTTAC
253 TTATCAATGGATAGCATATGCTTCAAGTTTCCTGATGCAAACATACAAATATAATATATTTTTAC
982008 CAAAAGCAAAAAAGATTTTAATTTAAAATCATTTATAAAATTATAAACCCATTTAAAGAGAGTAA
318 CAAAAGCAAAAAAGATTTTAATTTAAAATCATTTATAAAATTATAAACCCATTTAAAGAGAGTAA
* * *
982073 CAAAGCTTTCGATGGTATAAGTGAAAATAAAAGACTTTTTATGCAAATGGATGGCATCCGCTTCA
383 CAAAGCTTTCAATGATATAAGTGAAAATAAAAGAATTTTTATGCAAATGGATGGCATCCGCTTCA
** ** * * *
982138 TGTTTCTCGATGCAAACATTGAAATATGATTTACTTTACCCAAAAGCAACAAAGATTATG
448 ACTTTCTCGATGCAAACATACAAATATGATCTACTTTACCCAAAAGCAAAAAAGATTATA
* * * * * * * **
982198 ATTTAAAGTCATTTATAAGATTATGAAACCATTTAAAGCGAGTAATAAAGCTTTTGATGACTTCG
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACAAAGCTTTCGATGGCATAA
* * * * * * * * *
982263 GTG-ACTACAAATGCACCTTTCTTGTCAGTGAATGTCTTTGCTATACATTTTCC-AATGCAAACA
66 GTGAAATA-AAAT-CACTTTTCATG-CAATGGATGGC-ATGCTTTATA-TTTCCTAATGCAAACA
* * * *
982326 TCCAATTATGTTTTATTTCAACTAAAAAT-AAAAAAAAATTGATTTAAAATCATTCATAAATTCT
126 TCCAATTATGATTTATTTTAACCAAAAATGAAAAAAAAATTGATTTAAAATCATTCATAAATTAT
* *
982390 AAAACCATTTAAAGCAAGTAACAAGGATTTCGATGGCATGAGTGACTATAAATGCACTT-TCATT
191 AAAACCATTTAAAGCAAGTAACAAGGATTTCGATGACATGAGTGACTATAAATGCAATTCTC-TT
* * * * * * *
982454 GTCAATGGATAGCGTATGCTTCATGTTTCCTGATGCAAACATCCATATATAATATGTTTTTGCCA
255 ATCAATGGATAGCATATGCTTCAAGTTTCCTGATGCAAACATACAAATATAATATATTTTTACCA
*** * * * * *
982519 AAATTTAAAAATATTTTGATTTAAAATC-TTTTTTAAATTATACAA-CCATTTAAAGCGAGTAAC
320 AAAGCAAAAAAGATTTTAATTTAAAATCATTTATAAAATTATA-AACCCATTTAAAGAGAGTAAC
* * * ** * **
982582 -AAGTGTTTTAATGATATGAGTGACTATAAATGGAATTCTCTTA-GC-AATGGATGGCATTTGCT
384 AAAG-CTTTCAATGATATAAGTGAAAATAAA-AGAATT-T-TTATGCAAATGGATGGCATCCGCT
* * *
982644 TCAACTTTCTTGATGGAAACATACAAATATGATCTATTATTA-CCAAAAGCAAAAAAGATT-TCA
445 TCAACTTTCTCGATGCAAACATACAAATATGATCTACT-TTACCCAAAAGCAAAAAAGATTAT-A
982707 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACAAAGCTTTCGATGGCATAA
1 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACAAAGCTTTCGATGGCATAA
982772 GTGAAAATAAAAT-ACTTTTCATGCAAATGGATGGCATCCGCTTTATATTTCCTAATGCAAACAT
66 GTG-AAATAAAATCACTTTTCATGC-AATGGATGGCAT--GCTTTATATTTCCTAATGCAAACAT
*
982836 CCAATTATGATTGATTTTAACCAAAAA
127 CCAATTATGATTTATTTTAACCAAAAA
982863 GGGAAATGAT
Statistics
Matches: 531, Mismatches: 114, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
507 5 0.01
508 71 0.13
509 321 0.60
510 62 0.12
511 72 0.14
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (507 bp):
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGAGAGTAACAAAGCTTTCGATGGCATAA
GTGAAATAAAATCACTTTTCATGCAATGGATGGCATGCTTTATATTTCCTAATGCAAACATCCAA
TTATGATTTATTTTAACCAAAAATGAAAAAAAAATTGATTTAAAATCATTCATAAATTATAAAAC
CATTTAAAGCAAGTAACAAGGATTTCGATGACATGAGTGACTATAAATGCAATTCTCTTATCAAT
GGATAGCATATGCTTCAAGTTTCCTGATGCAAACATACAAATATAATATATTTTTACCAAAAGCA
AAAAAGATTTTAATTTAAAATCATTTATAAAATTATAAACCCATTTAAAGAGAGTAACAAAGCTT
TCAATGATATAAGTGAAAATAAAAGAATTTTTATGCAAATGGATGGCATCCGCTTCAACTTTCTC
GATGCAAACATACAAATATGATCTACTTTACCCAAAAGCAAAAAAGATTATA
Found at i:984255 original size:171 final size:169
Alignment explanation
Indices: 983962--984398 Score: 450
Period size: 171 Copynumber: 2.6 Consensus size: 169
983952 AAACAAATTA
* * * * *
983962 ATTTAATATCATTTATAAGATAATAAAACCAACTT-AAACGAGTTACAAGGCTTTCGAAGGCATG
1 ATTTAA-ATCATTTATAAGATAATAAAACC-ATTTAAAATGAGTAAAAAGGCTTTCAAAGGCATG
* * *
984026 AGTGACTATAAATGGACTTTTCTTGTCAATGGATTGCATCTACTTCATGTTTTCCAATG-AACAC
64 AGTGACTATAAATGGACTTTTCTTGTCAAT-AAATGCATCTACTTCATGGTTTCCAATGCAA-AC
* * * * *
984090 ATCCAATTA-TGGTAGGTTTGAACCAAAAACGTAAAAGATTTTG
127 ATCCAAATACT-ATAGGTTCGAACCAAAAACGAAAAAGATTTCG
* * * *
984133 ATTTAAAGTCATTTATAATATTATAAAACCATTTAAAATGAGTAATAAGGATTTCAAAGGCATGA
1 ATTTAAA-TCATTTATAAGATAATAAAACCATTTAAAATGAGTAAAAAGGCTTTCAAAGGCATGA
* * *
984198 GTCACTATAAAAGGACTTTTCTTGTCAATAAATGCCATCTACTTCA-GAGTTTCCAATGCAAATA
65 GTGACTATAAATGGACTTTTCTTGTCAATAAATG-CATCTACTTCATG-GTTTCCAATGCAAACA
**
984262 TCCAAATACTATAGGTTCGAACCAAAATGGAAAAAGATTTCG
128 TCCAAATACTATAGGTTCGAACCAAAAACGAAAAAGATTTCG
** * ** ** * * * *
984304 ACTGAAAATCATTTGTAAGATAATTGAATGATTGAAAGTGAGTAAAAAAGCTTTCAAAGGTATGA
1 A-TTTAAATCATTTATAAGATAATAAAACCATTTAAAATGAGTAAAAAGGCTTTCAAAGGCATGA
* *
984369 GTGACTATAAATTGACTTTTCTTATCAATA
65 GTGACTATAAATGGACTTTTCTTGTCAATA
984399 GAGGGCGTCA
Statistics
Matches: 219, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
170 8 0.04
171 204 0.93
172 7 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (169 bp):
ATTTAAATCATTTATAAGATAATAAAACCATTTAAAATGAGTAAAAAGGCTTTCAAAGGCATGAG
TGACTATAAATGGACTTTTCTTGTCAATAAATGCATCTACTTCATGGTTTCCAATGCAAACATCC
AAATACTATAGGTTCGAACCAAAAACGAAAAAGATTTCG
Found at i:996853 original size:11 final size:11
Alignment explanation
Indices: 996837--996863 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
996827 ATAGATAAAA
996837 TATTAATATTT
1 TATTAATATTT
996848 TATTAATATTT
1 TATTAATATTT
996859 TATTA
1 TATTA
996864 TTTTATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTAATATTT
Found at i:1000782 original size:24 final size:25
Alignment explanation
Indices: 1000729--1000783 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
1000719 ATGCATCTTT
*
1000729 ATGCATCCCATTAAATCAATTTTTG
1 ATGCATCCCATTAAATAAATTTTTG
*
1000754 ATGCATCCTATTAAATAAATTTTTG
1 ATGCATCCCATTAAATAAATTTTTG
1000779 -TGCAT
1 ATGCAT
1000784 AGATCTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (25 bp):
ATGCATCCCATTAAATAAATTTTTG
Found at i:1006844 original size:11 final size:11
Alignment explanation
Indices: 1006818--1006856 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
1006808 TCTTCCATTT
1006818 TTTCTC-TTTC
1 TTTCTCTTTTC
*
1006828 TTTCTCTTTTA
1 TTTCTCTTTTC
1006839 TTTCTCTTTTC
1 TTTCTCTTTTC
1006850 TTTCTCT
1 TTTCTCT
1006857 CGAGTGGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTCTCTTTTC
Found at i:1010127 original size:171 final size:171
Alignment explanation
Indices: 1008230--1010554 Score: 1339
Period size: 171 Copynumber: 13.7 Consensus size: 171
1008220 TTACAATTCA
* * * ** * * *
1008230 CTTCATGTTTCCTAATGCAAACATCTAATTATGGTCAACTTTAA--AGAAAATGAAGAAGATTTT
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAACCA-AAAATGAAAAAGATTTC
* * * * * *** * ***
1008293 GACTGAAAATCTTTTA-AAGATTAGAAAACTATTTAAAAAAAGTAATAAGGCTTACAAAGGCATG
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATG
* * * * ** * ***
1008357 AGTGACAATAAATGAACTTTTCTTG-CAAATCAATAGCTTCCA
130 AATGACTATAAAAGGACTTTTCTTGTC-AATGGATGGCTTTTG
* * * ** *
1008399 CTTCACGTTTCTCTAATCCAAACATCCAATTATGATCTG-TATTAAGTAAAAAT-AAAAATTATT
1 CTTCATGTTT-TCTAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAA-GATT
* * * * ** * * *
1008462 TCAATTTTAAATCATTTATATG-TTATAAAACCATATAAAGCAACTAACAAAGG-TTTCGATA-A
63 TCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAAC-AAGGCTTTTGA-AGG
* * * *
1008524 CAT-AAGTGACTATAAATA-GA-TTGTTCTTGTCAATCGATGACATCTG
126 CATGAA-TGACTATAAA-AGGACTT-TTCTTGTCAATGGATGGCTTTTG
* * * * * ***
1008570 ATTCATG-TTTCTTGATGGAAACATCCAAATATGATCTG-TTTTAACCAAGAGCCAAAAAGATTT
1 CTTCATGTTTTC-TAATGCAAACATCCAATTATGAT-TGATTTTAACCAAAAATGAAAAAGATTT
* *
1008633 CGATTTAAAATAATTTATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGC-TTTGAATGGCA
64 CGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAA-GGCA
** * * * * * *
1008697 TGAGGGACCATAAATGGACTTTTCTTGGCAATGGCTAGCATTTG
128 TGAATGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
* * * * * * * *
1008741 CTTCATGTTCTAC-AATGCAAGCTTCAAACTATGATAGGTTTTAATCAAAAATGAAGAAAGATTT
1 CTTCATGTT-TTCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAA-AAAGATTT
* * * * * * * * *
1008805 CTATTAAAAATTATTTACAAGATTATAAAACTA-CTAATAGGGAGTAACAAAGCTTTCGAAGGCA
64 CGATTTAAAATCATTTATAAGATTATAAAACCATTTAA-AGTGAGTAACAAGGCTTTTGAAGGCA
* * * *****
1008869 T-AAGTGACGATAAATGGACTTTTCTTGTTAATGGATGGCAGCCA
128 TGAA-TGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
* ** * * * ** * * *
1008913 CTTCATGCTTTCTAATTAAAACATCCAATGATGATAGGTTGGAACTAAAAAACGAAAAAGATTTT
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAAC-CAAAAATGAAAAAGATTTC
** * * * * ** * * *
1008978 GACATAGAATGACTTGTAAGATTATAAAATGATTTAAAGTGATTAACTAGGCTTTTGATGGCATG
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATG
* * * * **
1009043 AGTGACTATAACTAGG-C-TTTCTTGT-AATGGTTGGCATCCG
130 AATGACTATAA-AAGGACTTTTCTTGTCAATGGATGGCTTTTG
* ** * * * *
1009083 ATTC-TCATTTCTTAATGCAAACATCAAATTATAATTGA-TTGAAGCCAAAAAAGAAAAATG-TT
1 CTTCATGTTTTC-TAATGCAAACATCCAATTATGATTGATTTTAA-CCAAAAATGAAAAA-GATT
* *
1009145 TCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTGATA-GT
63 TCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGA-AGGC
* * **
1009209 ATGACTGACTACAAAAGGACATTTT-TTGTCAATGGATGG-TATCCG
127 ATGAATGACTATAAAAGGAC-TTTTCTTGTCAATGGATGGCT-TTTG
* * * * * ** * * ** *
1009254 TTTCATGTATCCTGATACAAACATCCAATTATTTTTTATTTTAAGCAGTAATGAAAAAGATTTCA
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTCG
** * * *
1009319 ATTTAAAATTGTTTAT-TGATTAT-AAACAATTAAAAGTGAGTAACAAGGCTTTT-AGAGGCAT-
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGA-AGGCATG
* * *
1009380 AAGTGACTATAAATA-GACTTTT-TTCCTCAATGGATGCCTTTTA
130 AA-TGACTATAAA-AGGACTTTTCTT-GTCAATGGATGGCTTTTG
* * * * *
1009423 CTTCATG-TTTCTCAATGCAAACATCCAATTATGAGTGATGTTAACC-AAAATCAAAAGGATTTT
1 CTTCATGTTTTCT-AATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTC
* ** * * ** * * * *
1009486 GATCTAAAATTGTGTATATGATTATAAAACCATTTAAAAAGAGTGATAAGGCTTTCGAACGCATG
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATG
***
1009551 AATGACTATAAATA-GACTTTTCTTGTCAATGGATGGCTTGCC
130 AATGACTATAAA-AGGACTTTTCTTGTCAATGGATGGCTTTTG
** * * *
1009593 CTTCA-CATTTCACAATGTAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAATGATTTC
1 CTTCATGTTTTC-TAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTC
** *** *
1009657 GATTTAATGTCATTTATAAGATTATTAAAACCATTTAAAACAAGTAACAAGGCTTTCGAAGGCAT
65 GATTTAAAATCATTTATAAGATTA-TAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCAT
** * * * *
1009722 GGCTGACTATAAATA-GA-TTTTTTTGATCAATGGATGGCATCTA
129 GAATGACTATAAA-AGGACTTTTCTTG-TCAATGGATGGCTTTTG
* * *
1009765 CTTCATG-TTTCTCAAT-CTAGACATCCAAATATGATTGA-TTTAACC--AAATGCCAAAATGAT
1 CTTCATGTTTTCT-AATGC-AAACATCCAATTATGATTGATTTTAACCAAAAATG--AAAAAGAT
* * * * * *
1009825 TTTGATTTAAACTCATTTATAAGATTATAAAACCATTTAAAGTAACTAACTAGGCTTTTGATGGC
62 TTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGC
* * * **
1009890 ATTAATGACTGTAAAAGGACTTGTT-TTGTCAATGGATGG-TGGTCA
127 ATGAATGACTATAAAAGGACTT-TTCTTGTCAATGGATGGCT-TTTG
** * ** ** * *
1009935 CTTCACATTTCCTAATGCAAACATCCAATTATGATCAATTTTAAATAAAAATTAAAAAGATTTCA
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTCG
* * * *
1010000 ATTTAAAATCATTTTTAAGATTATAAAACCATTGAAAGTGAGTAACAAGGCTTTTGGACGCATGA
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGA
* *
1010065 ATGAATATAAAAGGACTTTTCTTCTCAATGGATGGCTTTTG
131 ATGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
* * * *
1010106 CTTCATGTTTTCTAGTGCAAACATCTAATTATGATTTG-TTTTAA-C-TAAA--AAAAAGATTTT
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGA-TTGATTTTAACCAAAAATGAAAAAGATTTC
* * * * * * *
1010166 AATTTAAAATTATTTATAAAATTATAACACCATTTAAAGCGAGTAA-TAGAGCTTTCGAAGGCAT
65 GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAG-GCTTTTGAAGGCAT
** * * * *
1010230 GCGTGACTATAAATGGACTTTTCTTATCAAT-GATGACATTTG
129 GAATGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
* * * * ** ** * *
1010272 CTTCAT-ATTTCTGATGCAAACATCTAATTATGGTCAATTTTAACTGAAAA-GAAGAAGATTTTG
1 CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTCG
* * * * ** * * *
1010335 GTTGAAAAACATTTATAAGATTATAAAACTATTTAAAGCAAGTAATAAGCCTTTTAAAGGCATGA
66 ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGA
* * * * * *
1010400 ATGA-TAGTAAATGAAATTTTCTTGTCAATTGACGACTTTTG
131 ATGACTA-TAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
* * * * * * * *
1010441 CTTCATGTTTCCCTAATACAAACGTCCAATTATGATTTG-TATTAACTAAAAATTAAAAAAAATT
1 CTTCATGTTT-TCTAATGCAAACATCCAATTATGA-TTGATTTTAACCAAAAATGAAAAAGATTT
* * * * * * **
1010505 -AATTTAAAATTATTTAT-ATACTATAAAACTATGTAAAGCAAGTAACAAGG
64 CGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGG
1010555 GTTTCAATGT
Statistics
Matches: 1669, Mismatches: 397, Indels: 179
0.74 0.18 0.08
Matches are distributed among these distances:
164 1 0.00
165 29 0.02
166 17 0.01
167 92 0.06
168 122 0.07
169 215 0.13
170 355 0.21
171 515 0.31
172 298 0.18
173 25 0.01
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (171 bp):
CTTCATGTTTTCTAATGCAAACATCCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTCG
ATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGCATGA
ATGACTATAAAAGGACTTTTCTTGTCAATGGATGGCTTTTG
Found at i:1020934 original size:15 final size:16
Alignment explanation
Indices: 1020909--1020941 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
1020899 CCTGTGGATG
1020909 ATGCAATTTGCTTTTA
1 ATGCAATTTGCTTTTA
1020925 ATGC-ATTTGCTTTTA
1 ATGCAATTTGCTTTTA
1020940 AT
1 AT
1020942 TTAGGGAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (16 bp):
ATGCAATTTGCTTTTA
Found at i:1022934 original size:73 final size:73
Alignment explanation
Indices: 1022845--1023057 Score: 214
Period size: 73 Copynumber: 2.9 Consensus size: 73
1022835 CAAGAGATAG
* ** *
1022845 TGTTAGTCAATTAAGAGATTACTACCAGAAA-TCGGGTTCAGAGATAGAAATGACTTAATCGACT
1 TGTTAGTCGATTAAGAGGCTACTACCAGAAACT-GGGTTCAGAGATAAAAATGACTTAATCGACT
*
1022909 AGGAAGTTT
65 AAGAAGTTT
* * * * * * *
1022918 TGTTAGTCGACTAAGAGGCTATTGCC-GAAAACTGAGTTCAAAGACAAAAACGACTTAATCGACT
1 TGTTAGTCGATTAAGAGGCTACTACCAG-AAACTGGGTTCAGAGATAAAAATGACTTAATCGACT
1022982 AAGAAGTTT
65 AAGAAGTTT
** * * * * * *
1022991 TAATAGTCGATTAAAAGGCTACTACTAGAAACTGGGTTTAGAGTTAAAAATGACTTAGTTGACTA
1 TGTTAGTCGATTAAGAGGCTACTACCAGAAACTGGGTTCAGAGATAAAAATGACTTAATCGACTA
1023056 AG
66 AG
1023058 TAATAATCAT
Statistics
Matches: 110, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
72 1 0.01
73 107 0.97
74 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (73 bp):
TGTTAGTCGATTAAGAGGCTACTACCAGAAACTGGGTTCAGAGATAAAAATGACTTAATCGACTA
AGAAGTTT
Found at i:1026445 original size:19 final size:20
Alignment explanation
Indices: 1026402--1026439 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1026392 AGACTCATTT
1026402 TAACTGGTTCAAAGAAGTCC
1 TAACTGGTTCAAAGAAGTCC
1026422 TAACTGG-TCAAAGCAAGT
1 TAACTGGTTCAAAG-AAGT
1026440 TCAACTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (20 bp):
TAACTGGTTCAAAGAAGTCC
Found at i:1030278 original size:20 final size:20
Alignment explanation
Indices: 1030246--1030284 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1030236 AATGAGATGA
*
1030246 ACTTGCTTTAACCAGTTAAG
1 ACTTGCTTTAACCAATTAAG
1030266 ACTT-CTTTGAACCAATTAA
1 ACTTGCTTT-AACCAATTAA
1030285 AATGAGTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ACTTGCTTTAACCAATTAAG
Found at i:1034670 original size:74 final size:73
Alignment explanation
Indices: 1034527--1034740 Score: 266
Period size: 74 Copynumber: 2.9 Consensus size: 73
1034517 ATCATTATTA
* * * * * *
1034527 CTTAGTCAACTAAGTCGTCTCTATCTCTGAACCCAGTTTCTGGTTGTAGCCTCTTAGTCGACGAT
1 CTTAGTCAATTAAGTCGTTTCTATCTCTGAACCCCGTTTCTGGTAGTAGCCTCTTAGTCGACTAA
1034592 CAAAACTT
66 CAAAACTT
* * *
1034600 CTTAGTCGATTAAGTCATTTCTATCTCTAAACCCCGATTTCTGGTAGTAGCCTCTTAGTCGACTA
1 CTTAGTCAATTAAGTCGTTTCTATCTCTGAACCCCG-TTTCTGGTAGTAGCCTCTTAGTCGACTA
1034665 ACAAAACTT
65 ACAAAACTT
* * * * ** **
1034674 CTAAGTCAATTAAGTCGTTTCTGTCTTTGAACCCGGTTTCTGACAGTAATCTCTTAGTCGACTAA
1 CTTAGTCAATTAAGTCGTTTCTATCTCTGAACCCCGTTTCTGGTAGTAGCCTCTTAGTCGACTAA
1034739 CA
66 CA
1034741 CTTTCTCTTG
Statistics
Matches: 120, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
73 57 0.47
74 63 0.52
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35
Consensus pattern (73 bp):
CTTAGTCAATTAAGTCGTTTCTATCTCTGAACCCCGTTTCTGGTAGTAGCCTCTTAGTCGACTAA
CAAAACTT
Found at i:1036280 original size:15 final size:15
Alignment explanation
Indices: 1036260--1036288 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1036250 TGTTCAGTTG
1036260 CATTAAAAGCAAATA
1 CATTAAAAGCAAATA
1036275 CATTAAAAGCAAAT
1 CATTAAAAGCAAAT
1036289 TGCATCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (15 bp):
CATTAAAAGCAAATA
Found at i:1044638 original size:73 final size:73
Alignment explanation
Indices: 1044551--1044687 Score: 220
Period size: 73 Copynumber: 1.9 Consensus size: 73
1044541 ATCATTCTTA
*
1044551 CTTAGTCGACTAAGTCGTCTCTGTCTCTAAACCCAGTTTCTAGCAGTAGCCTCTTAGTCAACTAT
1 CTTAGTCGACTAAGTCATCTCTGTCTCTAAACCCAGTTTCTAGCAGTAGCCTCTTAGTCAACTAT
1044616 CAAAACTT
66 CAAAACTT
* * * * *
1044624 CTTAGTCGATTAAGTCATTTCTGTCTCTGAACCCAGTTTCTGGTAGTAGCCTCTTAGTCAACTA
1 CTTAGTCGACTAAGTCATCTCTGTCTCTAAACCCAGTTTCTAGCAGTAGCCTCTTAGTCAACTA
1044688 ACNNNNNNNN
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 58 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (73 bp):
CTTAGTCGACTAAGTCATCTCTGTCTCTAAACCCAGTTTCTAGCAGTAGCCTCTTAGTCAACTAT
CAAAACTT
Found at i:1046733 original size:170 final size:169
Alignment explanation
Indices: 1046315--1047812 Score: 746
Period size: 170 Copynumber: 8.8 Consensus size: 169
1046305 TTTAAACCAA
* * * *
1046315 AACTTAAAATATCATTTATAA-ATTATAAAACCATTTAAAGTAAGTAACTAAGG-TTTCGATGG-
1 AACTT-AAA-ATCATTTATAAGATTATAAAACCAATTAAAGTCAGTAAC-AAGGCTTTCAAAGGC
* * * * * * * *
1046377 ATGAATTACTATATATGAACTTTTTTTGTCAATGGATGGCATCCGCTTCACATTTCTCAATGTAG
63 ATGAGTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACATTTCCCAATGTAA
* * *
1046442 ACATCCAAATATGATCTAATTTAACCACAAACAAAAAAAGATTTT
127 ACATCCAAATATGATC-ATTTTAACCAAAAAC-AAAATAGATTTT
* * *
1046487 GACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTGAGTAACAAGGTTTTCAAAGGCATG
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTCAGTAACAAGGCTTTCAAAGGCATG
* *
1046552 AGTGACTATAAATGGACTTTTCTTGTCAATAGATAGCATTTGCTTCACATTTCCCAATGTAAACA
66 AGTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACATTTCCCAATGTAAACA
*
1046617 TCCAAATATGATCCATTTTTACCAAAAACAAAATAGATTTT
130 TCCAAATATGAT-CATTTTAACCAAAAACAAAATAGATTTT
* * * *
1046658 -ACTTAAAATCATTTATAAGATTATAAAACCAGTTCAAG-CATGTACCATA-GCTTTCAAATGCA
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTCA-GTAACA-AGGCTTTCAAAGGCA
* * ** *
1046720 TGAGTGTCTATAAATGGACTTTTTTTGTCAAGAGATGTCATTCGCTTCATGTTTCCCAATGCAAA
64 TGAGTGACTATAAATGGACTTTTTTTGTCAATAGATG-CATTCGCTTCACATTTCCCAATGTAAA
* * *
1046785 CATCCAATTATGAT-ATATTTGAA-CAAAAATAAAAT-TATTTT
128 CATCCAAATATGATCAT-TTT-AACCAAAAACAAAATAGATTTT
* * ** * * * * **
1046826 AATTTAAAATCATATATAAGATTATAAAATGAATTAAAGTGAGTAACTAGGCTTTCGATGGTTTG
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTCAGTAACAAGGCTTTCAAAGGCATG
* ** * * * * * *** *
1046891 GGTGACTATAAAAAGACTTTTCTTGTCAATGGATGGTATTTGCTTCACATTTCTCAAAACAAAAA
66 AGTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACATTTCCCAATGTAAACA
* * * ** **
1046956 TCCAATTATGACCAATTTTAACAAAAAATGAAA-AGCATTCC
130 TCCAAATATGATC-ATTTTAACCAAAAACAAAATAG-ATTTT
* * * * * * *
1046997 AATTTAAAATCATTAATGAGATTATAAAACCATTTAAAGTGAGTAACTAGGCTTTTAAAGGCATG
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTCAGTAACAAGGCTTTCAAAGGCATG
* * * * * * * *** * *
1047062 ATTGACTA-AAATGGACTTTTCTTCTTAATGGATAG-AATCTGCTTCACGTTTCATGATGCAAAT
66 AGTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTC-GCTTCACATTTCCCAATGTAAAC
* * *
1047125 ATCCAAATGA-AATCAATTTTAACCAAATACCAAAAATAG--TTC
129 ATCCAAAT-ATGATC-ATTTTAACCAAA-AAC-AAAATAGATTTT
* * * * * * * ** * ** *
1047167 GATTTAAAATTATTTATAAGGTTACAAAACCATTTAAAG-CGAGTGATTACGCTTTTGAAGGTAT
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTC-AGTAACAAGGCTTTCAAAGGCAT
* * * * ** *
1047231 AAATGACTATAAATGGA-TTTTTCTTGTAAATGGATGGC-TTCCGCTTCATGTTTTCC-A-GCTC
65 GAGTGACTATAAATGGACTTTTT-TTGTCAATAGAT-GCATT-CGCTTCACATTTCCCAATG-T-
* **** * *
1047292 AAACAT-CAAATTAT-ATCTGTTTTCTTTAAAAATGAAAATA-ATTTC
125 AAACATCCAAA-TATGATC-ATTTTAACCAAAAA-CAAAATAGATTTT
* * * * * ***
1047337 AGCTTAAAATCATTTATAAGCTTATATAACCATTTAAAG-CGAGTAATAAGGCTTTTGGAGGCAT
1 AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTC-AGTAACAAGGCTTTCAAAGGCAT
* * * * * * * * * ** *
1047401 GAGTTACTCTCAATGGACTTTTCTTCTCAGTGGATGGCTTTTGC--CACATGTTTTTCAATGCAA
65 GAGTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACA--TTTCCCAATGTAA
* * * *
1047464 ACATCCAATTATAATCTATTTTAA-CATAAAATAAAAAAGATTTT
127 ACATCCAAATATGATC-ATTTTAACCA-AAAACAAAATAGATTTT
* * * * * * * *
1047508 GATTTAAAATTA-TTATTAA-ATTATAAAACC-ATTATAAGTGAGTAATAAAGG-TGTCGATA-T
1 AACTTAAAATCATTTA-TAAGATTATAAAACCAATTA-AAGTCAGTAA-CAAGGCTTTC-AAAGG
* * * * * *
1047568 CATGAGT-AGCTGTAAATTGACTTTTTTTCTCAATGGATGGGATTCGCTTCA-ATTTTCTCAATG
62 CATGAGTGA-CTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACA-TTTCCCAATG
** * * ** * * *
1047631 CCAACATCTAAATATGATCTGTTTTAAATAAAAACAAAAGATATTTC
124 TAAACATCCAAATATGATC-ATTTTAACCAAAAACAAAATAGATTTT
* ** * * * *
1047678 AACTTAAAATCATTTATAGGATTATAAAA-CAATTTAAAGGAACTAACAATGCTTTCAAAGCCCT
1 AACTTAAAATCATTTATAAGATTATAAAACCAA-TTAAAGTCAGTAACAAGGCTTTCAAAGGCAT
* * * * * * * * *
1047742 -AGGTGACTATAAATAGACTTTTCTTATCAATGGATGGCATCCACTTTACATTTCACATTGTAAA
65 GA-GTGACTATAAATGGACTTTTTTTGTCAATAGAT-GCATTCGCTTCACATTTCCCAATGTAAA
1047806 CATCCAA
128 CATCCAA
1047813 TTTTATCAAT
Statistics
Matches: 1029, Mismatches: 234, Indels: 127
0.74 0.17 0.09
Matches are distributed among these distances:
168 10 0.01
169 137 0.13
170 512 0.50
171 270 0.26
172 97 0.09
173 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (169 bp):
AACTTAAAATCATTTATAAGATTATAAAACCAATTAAAGTCAGTAACAAGGCTTTCAAAGGCATG
AGTGACTATAAATGGACTTTTTTTGTCAATAGATGCATTCGCTTCACATTTCCCAATGTAAACAT
CCAAATATGATCATTTTAACCAAAAACAAAATAGATTTT
Found at i:1047533 original size:510 final size:506
Alignment explanation
Indices: 1046315--1047716 Score: 1130
Period size: 511 Copynumber: 2.7 Consensus size: 506
1046305 TTTAAACCAA
* * **
1046315 AACTTAAAATATCATTTATAA-ATTATAAAACCATTTAAAGTAAGTAACTAAGG-TTTCGATGG-
1 AACTT-AAA-ATCATATATAAGATTATAAAACCAATTAAAGCGAGTAACT-AGGCTTTCGATGGC
* * * * * * * ** *
1046377 ATGAATTACTAT-ATATGAACTTTTTTTGTCAATGGATGGCATCCGCTTCACATTTCTCAATGTA
63 ATGAGTGACTATAAAAAG-ACTTTTCTTCTCAATGGATGGTATTTGC-TCACATTTCTCAATGCA
* * * * *
1046441 GACATCCAAATATGATCTAATTTAACCACAAACA-AAAAAAGATTTTGACTTAAAATCATT-TAT
126 AACATCCAATTATGATCTATTTTAA-CA-AAAAATAAAAAAGATTTTGATTTAAAATCATTAT-T
1046504 AAGATTATAAAACCAATTAAAGTGAGTAACAAGGTTTTCAAAGGCATGAGTGACTATAAATGGAC
188 AA-ATTATAAAACC-ATTAAAGTGAGTAACAAGGTTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
1046569 TTTTCTTGTCAATAGATAGCATTTGCTTCACATTTCCCAATGTAAACATCCAAATATGATCCATT
251 TTTTCTTCTCAATAGATAGAATCTGCTTCACATTTCACAATGCAAACATCCAAATATAATCAATT
* ** * *
1046634 TTTACCAAAAACAAAATAGATTTTACTTAAAATCATTTATAAGATTATAAAACCAGTTCAAGCAT
316 TTAACCAAAAACAAAATAGATTCGACTTAAAATCATTTATAAGATTACAAAACCAGTTAAAGCAT
* * * * * *
1046699 GTACCATAGCTTTCAAATGCATGAGTGTCTATAAATGGACTTTTTTTGTCAAGAGATGTCATTCG
381 GTA-CATAGCTTTCAAAGGCATAAATGACTATAAATGGACTTTTTTTGTAAAGAGATGGCATTCG
* * * *
1046764 CTTCATGTTTCCCAATGCAAACATCCAATTATGATATATTTGAACAAAAATAAAATTATTTT
445 CTTCATGTTTCCCAATGCAAACATCAAATTATGATATATTTCAACAAAAATAAAATAATTTC
* ** * **
1046826 AATTTAAAATCATATATAAGATTATAAAATGAATTAAAGTGAGTAACTAGGCTTTCGATGGTTTG
1 AACTTAAAATCATATATAAGATTATAAAACCAATTAAAGCGAGTAACTAGGCTTTCGATGGCATG
* * ** *
1046891 GGTGACTATAAAAAGACTTTTCTTGTCAATGGATGGTATTTGCTTCACATTTCTCAAAACAAAAA
66 AGTGACTATAAAAAGACTTTTCTTCTCAATGGATGGTATTTGC-TCACATTTCTCAATGCAAACA
* * * *** * *
1046956 TCCAATTATGACCAATTTTAACAAAAAAT-GAAAAGCATTCCAATTTAAAATCATTAATGAGATT
130 TCCAATTATGATCTATTTTAACAAAAAATAAAAAAG-ATTTTGATTTAAAATCATT-ATTAAATT
* *
1047020 ATAAAACCATTTAAAGTGAGTAACTAGGCTTTT-AAAGGCATGATTGACTA-AAATGGACTTTTC
193 ATAAAACCA-TTAAAGTGAGTAACAAGG-TTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC
* * * ** *
1047083 TTCTTAATGGATAGAATCTGCTTCACGTTTCATGATGCAAATATCCAAATGA-AATCAATTTTAA
256 TTCTCAATAGATAGAATCTGCTTCACATTTCACAATGCAAACATCCAAAT-ATAATCAATTTTAA
* * * * *
1047147 CCAAATACCAAAAATAG-TTCGATTTAAAATTATTTATAAGGTTACAAAACCATTTAAAGCGA-G
320 CCAAA-AAC-AAAATAGATTCGACTTAAAATCATTTATAAGATTACAAAACCAGTTAAAGC-ATG
* ** *
1047210 TGA-TTACGCTTTTGAAGGTATAAATGACTATAAATGGA-TTTTTCTTGTAAATG-GATGGC-TT
382 T-ACATA-GCTTTCAAAGGCATAAATGACTATAAATGGACTTTTT-TTGTAAA-GAGATGGCATT
* * * * ***
1047271 CCGCTTCATGTTTTCCAGCT-CAAACATCAAATTAT-ATCTGTTTTCTTTAAAAATGAAAATAAT
443 -CGCTTCATGTTTCCCA-ATGCAAACATCAAATTATGATAT-ATTTCAACAAAAAT-AAAATAAT
1047334 TTC
504 TTC
* * * * * *
1047337 AGCTTAAAATCATTTATAAGCTTATATAACCATTTAAAGCGAGTAA-TAAGGCTTTTGGA-GGCA
1 AACTTAAAATCATATATAAGATTATAAAACCAATTAAAGCGAGTAACT-AGGC-TTTCGATGGCA
* * * ** * *
1047400 TGAGTTACTCTCAATGGACTTTTCTTCTCAGTGGATGGCT-TTTGC-CACATGTTTTTCAATGCA
64 TGAGTGACTATAAAAAGACTTTTCTTCTCAATGGATGG-TATTTGCTCACA--TTTCTCAATGCA
* * *
1047463 AACATCCAATTATAATCTATTTTAACATAAAATAAAAAAGATTTTGATTTAAAATTATTATTAAA
126 AACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAGATTTTGATTTAAAATCATTATTAAA
* * * * * *
1047528 TTATAAAACCATTATAAGTGAGTAATAAAGG-TGTCGATA-TCATGAGT-AGCTGTAAATTGACT
191 TTATAAAACCATTA-AAGTGAGTAA-CAAGGTTTTC-AAAGGCATGAGTGA-CTATAAATGGACT
* * * * * * * * **
1047590 TTTTTTCTCAATGGATGGGAT-TCGCTTCA-ATTTTCTCAATGCCAACATCTAAATATGATCTGT
252 TTTCTTCTCAATAGATAGAATCT-GCTTCACA-TTTCACAATGCAAACATCCAAATATAATCAAT
** * * * * * * *
1047653 TTTAAATAAAAACAAAAGATATTTCAACTTAAAATCATTTATAGGATTATAAAACAATTTAAAG
315 TTTAACCAAAAACAAAATAGA-TTCGACTTAAAATCATTTATAAGATTACAAAACCAGTTAAAG
1047717 GAACTAACAA
Statistics
Matches: 704, Mismatches: 148, Indels: 78
0.76 0.16 0.08
Matches are distributed among these distances:
509 116 0.16
510 248 0.35
511 325 0.46
512 15 0.02
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (506 bp):
AACTTAAAATCATATATAAGATTATAAAACCAATTAAAGCGAGTAACTAGGCTTTCGATGGCATG
AGTGACTATAAAAAGACTTTTCTTCTCAATGGATGGTATTTGCTCACATTTCTCAATGCAAACAT
CCAATTATGATCTATTTTAACAAAAAATAAAAAAGATTTTGATTTAAAATCATTATTAAATTATA
AAACCATTAAAGTGAGTAACAAGGTTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTCTC
AATAGATAGAATCTGCTTCACATTTCACAATGCAAACATCCAAATATAATCAATTTTAACCAAAA
ACAAAATAGATTCGACTTAAAATCATTTATAAGATTACAAAACCAGTTAAAGCATGTACATAGCT
TTCAAAGGCATAAATGACTATAAATGGACTTTTTTTGTAAAGAGATGGCATTCGCTTCATGTTTC
CCAATGCAAACATCAAATTATGATATATTTCAACAAAAATAAAATAATTTC
Found at i:1048608 original size:171 final size:169
Alignment explanation
Indices: 1048405--1048891 Score: 464
Period size: 171 Copynumber: 2.8 Consensus size: 169
1048395 ATGCTTCTTG
* * ** * *
1048405 ATGCATACATCTAAATATGATCTGCCTTAACTAAAAACAAAAAAAGAATATGATTTACAATCATT
1 ATGCAAACATCCAAATATGATCTGGTTTAACTAAAAAC-AAAAAAGATTTTGATTTA-AATCATT
* *
1048470 TATAAGATTATAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGTATAAGTGACTATAAGTGG
64 TATAAGATTATAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGAATAAGTGACTATAAATGG
1048535 ACTTTTCTTGTCAATACATGGCATCCACTTGACAT-T-TCCTA
129 ACTTTTCTTGTCAATACATGGCATCCACTT--CATGTGTCCTA
* * * * * *
1048576 ATGCTAACATCCAAATATAATCTGGTTTAACTAAAAGCAAAAAAGATTTTGATGTGAAGTAATTT
1 ATGCAAACATCCAAATATGATCTGGTTTAACTAAAAACAAAAAAGATTTTGAT-TTAAATCATTT
* * * * * ** * *
1048641 ATACGATTATAGAA-TCATTTCAAGCAAGTCACTAGGCTTTCGATTGCATTAGTGACTATAAATG
65 ATAAGATTATA-AACT-ATTTAAAGCGAGTAACAAGGCTTTCGAAGGAATAAGTGACTATAAATG
* * ** * * *
1048705 GATTTTTCTTGTCAATAGATGTTATCTACTTCATGTGTCTTG
128 GACTTTTCTTGTCAATACATGGCATCCACTTCATGTGTCCTA
* ** *
1048747 ATGCAAACATCC-AATCATGA--TGGATTTTAGCTAAAAATGAAAAAGATTTTAATTTAAAATCA
1 ATGCAAACATCCAAAT-ATGATCTGG--TTTAACTAAAAACAAAAAAGATTTTGATTT-AAATCA
** *
1048809 TTTATAAGATTATAAAACTATTTAAAGCGAGTAACAACACTTTCAAAGGAATAAGTGACTATAAA
62 TTTATAAGATTAT-AAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGAATAAGTGACTATAAA
***
1048874 CAAACTTTTCTTGTCAAT
126 TGGACTTTTCTTGTCAAT
1048892 GGATGATGTT
Statistics
Matches: 250, Mismatches: 55, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
169 6 0.02
170 35 0.14
171 207 0.83
172 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
ATGCAAACATCCAAATATGATCTGGTTTAACTAAAAACAAAAAAGATTTTGATTTAAATCATTTA
TAAGATTATAAACTATTTAAAGCGAGTAACAAGGCTTTCGAAGGAATAAGTGACTATAAATGGAC
TTTTCTTGTCAATACATGGCATCCACTTCATGTGTCCTA
Found at i:1050468 original size:171 final size:171
Alignment explanation
Indices: 1049781--1051836 Score: 1297
Period size: 171 Copynumber: 12.1 Consensus size: 171
1049771 NNNTTAAAAT
* * *
1049781 GAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATG-GA-TATTTCGTGTCAATGGATGGCT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACT-TTTCTTGTCAATGCATGGCT
* ** * * * * * * ** * *
1049844 TTCGCTTCACATTTCTCAAGGCAAACATCCAATAATCAGCTATTTTAA-TGACAAATAAAAAAAA
65 TTTGCTTCATGTTTCTC-AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAA
* ** *
1049908 TTCAACTTAAAATCAATTATGAGATCATAAAATTATTTCAAGC
129 TTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * * * * *
1049951 GAGTAATAATGTTTTCGAAGGTATGAATGACTA-CAATG-CACTCTTT-GTGTCAATGGATGGCT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACT-TTTCTTGTCAATGCATGGCT
** * * * ** ** * *
1050013 TTCACTTCACGTTTCT-TGTAGTAAACATTCAATTATAATCTATTTTTGCCTAAAATG-TAAAAA
65 TTTGCTTCATGTTTCTCAG--GTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAA
* *
1050076 ATTCAACTTAAAAT-ATATTATGATATTATAAAACTATTTAAAGC
128 ATTCAACTTAAAATCA-ATTATGAGATTATAAAACCATTTAAAGC
* ** * * * * * * * * ** * *
1050120 GAGGAATAATACTTTCAAAAGAATGAGTGGCTACAAATG-CACCTTTCGTAACAAAGGATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
** * * * ** * * *
1050184 TTGCTTCACATTTCCTAAGGGAAACATTTAATTATAATCTGTTTTTGCCAAAAATGTAAAAACAA
66 TTGCTTCATGTTT-CTCAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAG-AAAAAAAA
* *
1050249 TTCAACTTAAAATCAATTATGAGATTA-AAAACCCATCTAAACC
129 TTCAACTTAAAATCAATTATGAGATTATAAAA-CCATTTAAAGC
* * * * * *
1050292 GAGTAATAAGGCTTTTGAAGGCGTAAGAGACTATAAATGAG-CTTTTCTTATCAATGCATAGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
* * * * * * *
1050356 TTGCCTCATGTTTCTGAGGGAAAACATTCAATTATAATTTGTGTTGAGAAAAAAAGAAAAAAAAT
66 TTGCTTCATGTTTCTCA-GGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAAT
* *
1050421 TTAACTTAAAATCAATTATGA-ATTTATAAAACCCTTTAAAGC
130 TCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGC
* * * * *
1050463 GAGTAATAAGGCTTTCAAAGGCATGATTGACTATAAATG-GACGTTTCTTGTCAATGAATGGCAT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
* * *** * * * * * ** * ** *
1050527 TCGCATCGCATTTCTCAAGGCAAACATTCAATTATCAGCTATGTTAA-TGACAACTATAAAAAAT
66 TTGCTTCATGTTTCTC-AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAAT
* * * * * * *
1050591 TCAACTTAAAAT-AATTTATAAGGTTATAATATCGTTTAAGGT
130 TCAACTTAAAATCAA-TTATGAGATTATAAAACCATTTAAAGC
* ** * ** * * *
1050633 GAGTAATAAGGCTTT-TAGAGATATGAGCGACTATGAAA-G-GACTCCTCATGCCAATGGATGGC
1 GAGTAATAAGGCTTTCGA-AGGCATGAGTGACTAT-AAATGAGACTTTTCTTGTCAATGCATGGC
** * * * *
1050695 TTTCACTTCATATTTCTTGAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAAATATAAAAA
64 TTTTGCTTCATGTTTC-TCAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGA-AAAAA
* *
1050760 AATTCAACTTAAAATCAATTATGAGATTATAAAACCTTTTAAAGT
127 AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* *
1050805 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-AGACTTTTCTTGCCAATGGATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
* * * ** *
1050869 TTGCTTCATGTTTCCCTA-GTAAACATTCAATTATAATCTGTTTTAACCAAGAGTGTAAAAAAAT
66 TTGCTTCATGTTTCTC-AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAAT
* * *
1050933 TCAACTTAAAATCAATTATGAGAGTATAAAACTATTTAACGC
130 TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
** * * * *
1050975 GAGTAATAATACTTTTGAAGGTATGAGTGACTACAAAT-AGACTTTTCTTGTCAAT-CGGTGGCT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGC-ATGGCT
* * * * * * * *
1051038 TTTGGTTCACGTTTCTCAAGGTAGACATTCAATTATAATTTGTTTTAACCAAAATAGCAAAAAAC
65 TTTGCTTCATGTTTCTC-AGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAA
* * *
1051103 TTCAATTTAAAATCAATTATGA-ATTTATAAAATCATTTAAAGT
129 TTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGC
* * * * * *
1051146 GAGTAATAGGGCTTTCGAAGACATGATTGACTATAAATG-GACTTTT-TTAGACAACAG-ATGTC
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTT-GTCAA-TGCATGGC
* ** * * * * * * * **
1051208 ATTCACTTCACGTTTCTTAAAGAAAATATCCAATTATAATCTATTTTAACAAAAATTG--AAAAA
64 TTTTGCTTCATGTTTC-TCAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAA
* * * * *
1051271 CTT-AA---AAAA--ATTTATAAGATTATAAAACCGTTTAAAGT
128 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * * * * *
1051309 AAGTAATAAGGCTTTCAAAGGGATAAATGACTATAAATGA-A-TATTT-TGTGTCAATGGATGGC
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACT-TTTCT-TGTCAATGCATGGC
* * * * ** ** ** ***
1051371 TTTTACTTCATGTTTCTTAAGGCAAACATTCAAATGCAATCTGTTTTAACCTAGGATCTAAAAAA
64 TTTTGCTTCATGTTTC-TCAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAA
* * *
1051436 ATTCAACTCATAATCAATTATGAGATTATAAAATCATTTCAAA-C
128 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGC
* * * * *
1051480 GAGTAATAATGCTTTCGAAGGCATGAGTGACTAAAAATG-GGCTCTTT-GTGTCAATGGATGGCT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACT-TTTCTTGTCAATGCATGGCT
* * * ** ** * * *
1051543 TTTACTTCATGTTTC-CTATGGTAAACATTCAATTGTAATCTATTTTTGCCTAAAATGTAAAAAC
65 TTTGCTTCATGTTTCTC-A-GGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAA
* *
1051607 ATTCAACTTAAAATCAATTATGATATTATAAAACTATTTAAAGC
128 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
* ** * * * * ** * * *
1051651 GAGAAATAATACTTTCGAAAGCATGAGTGGCTACAAATG-CACTTTTGGTGCCAAAGAATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
** * * * * ** * *
1051715 TTGCTTCACATTTCCTAAGGAAAACATTAAATTATAATCTATTTTTGTC-AAAAATGTAAAAACA
66 TTGCTTCATGTTT-CTCAGGTAAACATTCAATTATAATCT-GTTTTAACAAAAAAAG-AAAAAAA
* *
1051779 ATTCAACTTAAAATCACTTATGAAATTATAAAACCATTTAAA-C
128 ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
1051822 TGAGTAATAA-GCTTT
1 -GAGTAATAAGGCTTT
1051837 TCTTGTCAAT
Statistics
Matches: 1496, Mismatches: 326, Indels: 127
0.77 0.17 0.07
Matches are distributed among these distances:
162 2 0.00
163 109 0.07
164 2 0.00
165 11 0.01
166 2 0.00
167 1 0.00
168 3 0.00
169 141 0.09
170 349 0.23
171 578 0.39
172 294 0.20
173 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAGACTTTTCTTGTCAATGCATGGCTT
TTGCTTCATGTTTCTCAGGTAAACATTCAATTATAATCTGTTTTAACAAAAAAAGAAAAAAAATT
CAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC
Found at i:1053020 original size:171 final size:172
Alignment explanation
Indices: 1051833--1053127 Score: 931
Period size: 171 Copynumber: 7.6 Consensus size: 172
1051823 GAGTAATAAG
* * * *
1051833 CTTTTCTTGTCAATGCATGGCTTTTGC-TTCATATTTCTCAGGGCAGACATTCAAATATAATCTA
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAGGGCAAACATTCAATTATAATCTA
* * * * * * *
1051897 TGTTGAGAAAAAAAGAAAAAAAATTTAACTTAAAATCAATTATGAATTTATAAAACCCTTTAAAG
66 TTTTAAGCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
* * * * * *
1051962 CGAGTAATAGGGCTTTCGAAGGC-AAGATTGGCAATAAATGGA
131 CGAGTAATAAGGCTTTC-AAAGCTATGATTGACTATAAATAGA
* * * * * * * * ** * * ** *
1052004 CTTTTCTTGTCAACGAATGGCATTCG-TATCACATTTCCCAAAGCAAACATCCAAATACCAGCTA
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAGGGCAAACATTCAATTATAATCTA
* * * * * * * *
1052068 TTTTAATGGC-AACTA-AAAAAAAATTCAAGTTGAAAT-AATTTAT-AAGGTTACAAAATCGTTT
66 TTTTAA--GCAAAATAGTAAAAAAATTCAACTTAAAATCAA-TTATGAA-TTTATAAAACCATTT
* * * ** *** * *
1052129 AAGGTGAGTAATAAGGCTTTCCAAGAGATGAACAACTATGAAGAGA
127 AAAGCGAGTAATAAGGCTTTCAAAGCTATGATTGACTATAAATAGA
* * * * * *
1052175 CTTCTT-GTGTCAATAGATGGCTTTTGC-TTCATATTTC-CTGAGGTAAACATTCAATTATAATA
1 CTT-TTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAG-GGCAAACATTCAATTATAATC
* * *
1052237 TCTTTTAA-CGAAAATTGTAAAAAAATTCAATTTAAAATCAATTATGAGA-TTATAAAACCATTT
64 TATTTTAAGC-AAAATAGTAAAAAAATTCAACTTAAAATCAATTATGA-ATTTATAAAACCATTT
* * *
1052300 AAAGCGAGTAATAAGGCTTTTGAAAG-TATGAGTGACTATAAATGGA
127 AAAGCGAGTAATAAGGC-TTTCAAAGCTATGATTGACTATAAATAGA
* * * * *
1052346 CTTTTCTTGTCAATGGATGGCTTTTGCTTT-ATGTTTCCCTA-AGCAAACATTCAATTATAATAT
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTC-AGGGCAAACATTCAATTATAATCT
* ** * * * *
1052409 GTTTTATCCAAAA-ATGT-AAAATATT-AAGCTTAAAATCAATTGTG-ATATTATAAAATCAATT
65 ATTTTAAGCAAAATA-GTAAAAAAATTCAA-CTTAAAATCAATTATGAAT-TTATAAAACCATTT
* * ** * * * * * *
1052470 AAAACGAGTAGTATTGCTTTCGAAGGTGTTAGTGAATATAAATAGA
127 AAAGCGAGTAATAAGGCTTTCAAAGCTATGATTGACTATAAATAGA
* * * * * *
1052516 TTTTTTTTACCAATGGATAGCTTTTGCTTT-ATGTTTCTCAAGGCAAACATTCAATTATAATC-A
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAGGGCAAACATTCAATTATAATCTA
* *
1052579 GTTTTGATA-AAAAAT-GGAAAAAAA-TCAACTTAAAATCAATTATGAATTTATAAAACCATTTA
66 -TTTT-A-AGCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTA
* * * * *
1052641 AAGTGACTAAT-CGAGCATTCAAAGGC-ATGATTGACTATAAATGGA
128 AAGCGAGTAATAAG-GCTTTCAAA-GCTATGATTGACTATAAATAGA
**
1052686 CTTTTCTTGCCAATGGATGGCTTTTGC-TTCACGTTTC-CTA-GGCAAACATTCAAATTATAATC
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTC-AGGGCAAACATTC-AATTATAATC
* * * *
1052748 TGTTTTAACCATGAAT-GTAAAAAAATTCAACTTAAAATCAATTAT-AAGATTATAAAACCATTT
64 TATTTTAAGCA-AAATAGTAAAAAAATTCAACTTAAAATCAATTATGAA-TTTATAAAACCATTT
* * *
1052811 AAAGCGAGTAATAATGCTTTCGAAG-TCATGAATGACTATAAATAGA
127 AAAGCGAGTAATAAGGCTTTCAAAGCT-ATGATTGACTATAAATAGA
* * * *
1052857 CTTTTCTTACCAATGGGTGGCTTTTGCTTTCA-ATTTCTCAGGGCAAACATTCAATTTTACTCTA
1 CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAGGGCAAACATTCAATTATAATCTA
** *
1052921 TTTTAAGCAAAATAGTAAAAAAATTTGACTTAAAATCAATTACGAATTTATAAAACCATTTAAAG
66 TTTTAAGCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
* *
1052986 CGAGTAATAGGGCTTTCAAAGCTATGATTGACTATAAATAAA
131 CGAGTAATAAGGCTTTCAAAGCTATGATTGACTATAAATAGA
* * ** * * * * *
1053028 CTTTTCTT-CTCAACGGATGGCATTCAC-TTCATGTTTCT-TGAGGCAAATATCCAATTATCATC
1 CTTTTCTTGC-CAATGGATGGCTTTTGCTTTCATATTTCTCAG-GGCAAACATTCAATTATAATC
* *
1053090 TATTTTAATG-AAAACTA--ATAAAAATTCAACTTTAAATC
64 TATTTTAA-GCAAAA-TAGTAAAAAAATTCAACTTAAAATC
1053128 GTTTAAAGTG
Statistics
Matches: 882, Mismatches: 184, Indels: 117
0.75 0.16 0.10
Matches are distributed among these distances:
168 3 0.00
169 25 0.03
170 272 0.31
171 540 0.61
172 40 0.05
173 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (172 bp):
CTTTTCTTGCCAATGGATGGCTTTTGCTTTCATATTTCTCAGGGCAAACATTCAATTATAATCTA
TTTTAAGCAAAATAGTAAAAAAATTCAACTTAAAATCAATTATGAATTTATAAAACCATTTAAAG
CGAGTAATAAGGCTTTCAAAGCTATGATTGACTATAAATAGA
Found at i:1053263 original size:150 final size:151
Alignment explanation
Indices: 1052979--1053278 Score: 347
Period size: 150 Copynumber: 2.0 Consensus size: 151
1052969 TATAAAACCA
* * ** *
1052979 TTTAAAGCGAGTAATAGGGCTTTCAAAGCTATGATTGACTATAAATAAACTTTTCTTCTCAACGG
1 TTTAAAGCGAGTAATAAGGCTTTCAAAGCGATGAGCGACTATAAAGAAACTTTTCTTCTCAACGG
* ** * * *
1053044 ATGGCATTCACTTCATGTTTCTTGAGGCAAATATCCAATTATCATCTATTTTAATGAAAACT-AA
66 ATAGCATTCACTTCACATTTCTTGAGGCAAACATCCAATTATCATCTATTTTAATAAAAAATAAA
*
1053108 TAAAAATTCAACTTTAAATCG
131 TAAAAATTCAACTTAAAATCG
* * * * * *
1053129 TTTAAAGTGAGTAATAAGGCTTTCAAAGGGATGAGCGACTATGAAGGAACTTTT-TGTGTCAATG
1 TTTAAAGCGAGTAATAAGGCTTTCAAAGCGATGAGCGACTATAAAGAAACTTTTCT-TCTCAACG
* * * *
1053193 GATAGCTTTCGCTTCACATTTCTTGAGGTAAACATTCAATTA-CAATCTATTTTAATAAAAAATA
65 GATAGCATTCACTTCACATTTCTTGAGGCAAACATCCAATTATC-ATCTATTTTAATAAAAAATA
1053257 TAA-AAAAATTCAACTTAAAATC
129 -AATAAAAATTCAACTTAAAATC
1053279 AATTATGAGA
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
149 2 0.02
150 102 0.82
151 18 0.15
152 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (151 bp):
TTTAAAGCGAGTAATAAGGCTTTCAAAGCGATGAGCGACTATAAAGAAACTTTTCTTCTCAACGG
ATAGCATTCACTTCACATTTCTTGAGGCAAACATCCAATTATCATCTATTTTAATAAAAAATAAA
TAAAAATTCAACTTAAAATCG
Found at i:1053484 original size:170 final size:168
Alignment explanation
Indices: 1053129--1054295 Score: 598
Period size: 170 Copynumber: 6.9 Consensus size: 168
1053119 CTTTAAATCG
* * * * *
1053129 TTTAAAGTGAGTAATAAGGCTTTCAAAGGGATGAGCGACTATGAA-GGAACTTTTTGTGTCAATG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGG-ACTTTTTTTATCAATG
* * * * * *
1053193 GATAGCTTTCGCTTCACATTTCTTGAGGTAAACATTCAATTACAATCTAT-TTTAATAAAAAATA
65 GATGGCTTTTGCTTCACATTTCTAGAGGCAAACATTCAATTATAA--TATGTTT-ATCAAAAATA
* *
1053257 TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAGCCA
127 CAAAAAAATTCAACTTAAAATCAATTATGA-ATTATAAAACCA
* * * *
1053300 TTTAAAGTGAGTAATAAAGCTTTCGAACGTATGAGTGACTATAAATGGACTTTTTTTATCAATAG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGGACTTTTTTTATCAATGG
* * *
1053365 ATGGCTTTTACTTCACATATCCAGAGGCAAACATTCAATTATAATATGCTTTATCCAAAAATA-A
66 ATGGCTTTTGCTTCACATTTCTAGAGGCAAACATTCAATTATAATATG-TTTAT-CAAAAATACA
* *
1053429 AAAAAATTAAACTTAAAATCAATTATGATATTATAAAACTA
129 AAAAAATTCAACTTAAAATCAATTATGA-ATTATAAAACCA
********** * *
1053470 TTTAAAGTGAGTAATNNNNNNNNNNAA-GGCTGAGTGATTATAAATGGACTTTTTTTATCAATGG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGGACTTTTTTTATCAATGG
* ** * *
1053534 ATGGCTTTTGCTTTATGTTTCTA-AGGGCAAAGATTCAATTATAATATGTTT-TGACAAAAAAAG
66 ATGGCTTTTGCTTCACATTTCTAGA-GGCAAACATTCAATTATAATATGTTTAT--CAAAAATA-
* *
1053597 CAAAAAAAATCAACTTAAAATCAATTCTGAATTATAAAACCA
127 CAAAAAAATTCAACTTAAAATCAATTATGAATTATAAAACCA
** * * * * ** * *
1053639 TTTAAAACGAATAATAGGGCTTTTGAAGGCATGTTTGACTATAAGTGGACTTTTTTTACCAATGG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGGACTTTTTTTATCAATGG
* * ** * ** * *
1053704 ATAGCTCTTGCTTCATGTTTCCTTA-A--CAGACATTTGATTACAATCTGGTTTGA-CAAAAGA-
66 ATGGCTTTTGCTTCACATTT-C-TAGAGGCAAACATTCAATTATAATAT-GTTT-ATCAAAA-AT
* * *
1053764 AGCAAAAAAATTCAACTTAAAATTAATTATCAATTTATAAAATCA
126 A-CAAAAAAATTCAACTTAAAATCAATTATGAA-TTATAAAACCA
* * *
1053809 TTTAAAGCGAGTAATAGGGCTTTCGAA---A-GCA-TGA-T-T--A---ACTTTTTTTGTCAATG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATG-AGTGACTATAAATGGACTTTTTTTATCAATG
* ** * ** * * * ********
1053862 GATGGC-TTTGCTTTATGTTTCTTGAGTTAAACA-TCAAATTGTAATCTATTTGANNNNNNNNNN
65 GATGGCTTTTGCTTCACATTTCTAGAGGCAAACATTC-AATTATAATATGTTT-A--TCAAAAAT
** * * *
1053925 NNAAAAAAATTGAACTTAAAAT-AATTTATAAGATTATAAAATCA
126 ACAAAAAAATTCAACTTAAAATCAA-TTATGA-ATTATAAAACCA
* * * * * * * ** * *
1053969 TTTAAAGTGAGCAATAACGTTTTTGAATGTATGAGTAACTATAAATGGACTTTTCGTGTAAATGG
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGGACTTTTTTTATCAATGG
* * *
1054034 ATAGCTTTTGCTTCA-AGTTTCCT-GAGGCAAACATTCAATTATAATTTGTTTTTTCTAAAAATA
66 ATGGCTTTTGCTTCACA-TTT-CTAGAGGCAAACATTCAATTATAATATG-TTTATC-AAAAATA
* * *********
1054097 TAAAAAAATTCAACTAAAAATCAATTATGNNNNNNNNNNACCA
127 CAAAAAAATTCAACTTAAAATCAATTATG-AATTATAAAACCA
** * ** * *
1054140 TTTAAACCGAGTAATAAGGCTTTC-AA-AGATGAAAAAGACTATAAAT-GAATTTTTCTTGTCAA
1 TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATG--AGTGACTATAAATGGACTTTTT-TTATCAA
* * * * * ** * * ** *
1054202 TGCAT-GATTTTGCTTCACGTTTCTAGAGACAAACAATCAACAATAATCTATTTAAAAAAAATAT
63 TGGATGGCTTTTGCTTCACATTTCTAGAGGCAAACATTCAATTATAATATGTTTATCAAAAATAC
*
1054266 AAACAAAATTTAACTTAAAATCAATTATGA
128 AAA-AAAATTCAACTTAAAATCAATTATGA
1054296 NNNNNNNNNN
Statistics
Matches: 760, Mismatches: 183, Indels: 109
0.72 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 2 0.00
158 18 0.02
159 33 0.04
160 56 0.07
161 1 0.00
163 2 0.00
164 4 0.01
165 2 0.00
166 5 0.01
167 2 0.00
168 23 0.03
169 179 0.24
170 210 0.28
171 180 0.24
172 35 0.05
173 7 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.34
Consensus pattern (168 bp):
TTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGGACTTTTTTTATCAATGG
ATGGCTTTTGCTTCACATTTCTAGAGGCAAACATTCAATTATAATATGTTTATCAAAAATACAAA
AAAATTCAACTTAAAATCAATTATGAATTATAAAACCA
Found at i:1054727 original size:18 final size:19
Alignment explanation
Indices: 1054691--1054730 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
1054681 TTATTTTAAT
*
1054691 ATTATTTTATTTTAAAAAA
1 ATTATTTTATTTGAAAAAA
1054710 ATTATTTTA-TTGAAAAAA
1 ATTATTTTATTTGAAAAAA
1054728 ATT
1 ATT
1054731 CCTTTCACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
ATTATTTTATTTGAAAAAA
Found at i:1059513 original size:171 final size:171
Alignment explanation
Indices: 1058348--1065618 Score: 2867
Period size: 171 Copynumber: 42.9 Consensus size: 171
1058338 TTTTAAAATA
** * * *
1058348 TATAAATGATTTTAAATCAAAATC-TTTTCATTTTTAATTAAAACAAATCATAATTAGATGTTTA
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * *** *
1058412 CATT-GGTAAACCTAAAGCGAACA-CCATCCATTGACAAGAAAAGTTTGTTTATAGTCACTTATG
66 CATTAAG-AAACATGAAGTGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * ** *
1058475 CCTTTGAAAGTATTGTTACTCACTTTAAATGGTTTTATAATCT
129 CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * *
1058518 TATAAATGATTTTAAATTC-AAAT-TTTTTCATTTTTGGCTAAAATCCG-TCATGATTGGATGTT
1 TATAAATGATTTTAAA-TCAAAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTT
* ** * * * * * *
1058580 TGCATCAAGAAACATGAAGT-AAATAACATCTATTTACAAGAAAAATCCATTTATAATGACTAAT
64 TGCATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * * * *
1058644 GC-TATCGAAAGCCTAGTGACTTGCTTGAAATGATTCTATAAACG
128 GCAT-TCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * * * * * * * * * * *
1058688 TATACATGACTTCACATCAAAATCATTTTT-GTGTTTAGTTAGACCAGATTATATTTGGAAGTTA
1 TATAAATGATTTTAAATCAAAATC-TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT
* ** * * * * *
1058752 GCATTAGGAAATGTCAAGTGGATGCCATGCATTGACAAGAAAAGTCCATTTATAGTCACTTATGC
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *
1058817 CTTCGAAAGCCTTGTTACTCGCTTTAAATAG-TTTATAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * * ** *** * *
1058858 TATAACTGATTGTAAATCATATTCTTTTTTTTTGTTTTTGGTTAAGGTAGATCATATTTAGATGT
1 TATAAATGATTTTAAATCAAAATC---TTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGT
* * * * * ** * * * * *
1058923 ATGCATCAAGAAGCATGAAG-CAGATGTTAACCATTAACAAAAAAAGTTCATTTATAG-CTAGTC
63 TTGCATTAAGAAACATGAAGTGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTC
* * * * **
1058986 ATGCCTTTGAAA-CTCTCGTTACTCCCTTTAAATATTTTTATAAT-T
126 ATGCATTCGAAAGC-CTTGTTACTCGCTTTAAATGGTTTTATAATCT
* ** * * * * *
1059031 TATGAATGATTTTAAAT-TGAACCTTTTTTATATTT-G-TATAAATAGATCATAATTGAATGTTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTA-AAACAGATCATAATTGGATGTTT
* * ** * **** * * * * *
1059093 ACATTGAGAAACATGAAGCAAAATCCATTTGCTGACAAGAATAA-TCCACTTCTAATTACTCTTG
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATG
* *
1059157 CCTTCGAAAGTCTTGTTACAT-GCTTTAAATGGTTTT-TAATCT
129 CATTCGAAAGCCTTGTTAC-TCGCTTTAAATGGTTTTATAATCT
* * ** * * * * ** **
1059199 TGTAAATGATTTCAAGCCATACTCTTTTT-AATTTTGGTAAAAATTGATCATAATTTAATG-TTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * ** ** * * * * *
1059262 CATCATGAAATGTGAA-ACAAATGCTATCTATTCACAAGAAAAGTCTATTTATAGTCACTCATAC
66 CATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
1059326 CTTTGAAAGGCTTGTTACTCGATTTAAATGCTTTTATAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * *
1059368 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTAGTTAAAACAGATTATATTTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** * * * * *
1059433 CATTAAGAAATGTGAAGTGAAAGCCATACATTGATAAGAAAATTTCATATATAG-CAACTCATGC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGC
* *
1059497 ATTCGAAAGCCTTGTTACTCACTTTAAGTGGTTTTATTAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTA-TAATCT
** * * ** * *
1059540 TATAAATGATTACAAATCAAAAAGCTTCTTCATTTTTTATCAAAATCA-ATCATAATTGGACGTT
1 TATAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTT
* * * * * * * * * * * * *
1059604 TGCACTGAGAAACATGAAATGGATGGCATCCATTGATATGGACAGTCCTTTTATAATCACTCACG
64 TGCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * **
1059669 CCA-TCGAAAGCATAGTGACTTGC-ATAACACGGTTTTGGAATCT
129 -CATTCGAAAGCCTTGTTACTCGCTTTAA-ATGGTTTTATAATCT
* * * *
1059712 TATAAATGATTTCAAATCAAAATCTTTATC-GTTTTGGTTAAAACAGATCATAATTTGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * *** * * * *
1059776 CATT-GGCAAACTTGAAACAAAAGCCATCCATCGACAAGAAAAGTCCATTTATAGTTACTTATAC
66 CATTAAG-AAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * * *
1059840 CTTTGAAATCCTTATTACAT-GCTTTAAATAGCTGTATAATAT
130 ATTCGAAAGCCTTGTTAC-TCGCTTTAAATGGTTTTATAATCT
* * * *
1059882 TATAAATGATTTCAAAT-AAAATGTTTTT-ATTCTTGGTTAAATTC-GATCATAATTGGATGTTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAA-ACAGATCATAATTGGATGTTT
** * * *
1059944 GCA-TCGGTAA-AT---GTG-AAG-CA---AATG-C-----TA-TCCATTTATAGTCACTCATGT
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-
* * * ** *
1059992 C-GTCAAAAGCCTTGTTACTCGATTTAAATTATTTTATAATCC
129 CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** * * ** *
1060034 TAGGAATGATTTTAAATCAAAATCTTTTTCTTTTTTGGTTCAAACCTATCACAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** * * * * *
1060099 CATTGCGAAACATCAAGTGAAAACCATCCATTGATAAAAAAACAGTCCATTTATAGTCACTTATT
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGA-CAAGAAA-AGTCCATTTATAGTCACTCA-T
* * * **
1060164 GCA-TC-ACAAGCCTAGTTACTTGCTTTAAATAGTTTTATAATGA
128 GCATTCGA-AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * ** * * * *
1060207 TGTAAGTGATTTTAAATTGAATTTTTTTTCATTTTTGCTT-AAACATATCATAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** * * * * * * *
1060271 CATTGGGAAACATGAAGCGGATGCCATTCATTGACAAGAAAAGTCCTTTTATAGTCACGCATTC-
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCA
** * * * *
1060335 TGTTAAAAGCCTTATTATTCACCTTAAATGGTTTTATAATCT
131 T-TCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * * *
1060377 TGTAAATAATTTAAAATCAAAAACTTTTTTATTTTTGGTTAAAATCA-ATCATAATTGGAT-TTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTT
* * * * * ** *
1060440 GCATTAAGAACCATGAAGTCG-ATGCCATCCATTAATAAAAAAAGTCTGTTTATAGTTACTCATC
65 GCATTAAGAAACATGAAGT-GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-
* * ** * * **
1060504 CCA-TCAAAAGCCTAATGACTAGCTTTAAATTATTTTATAATCT
128 GCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * ** ** **
1060547 TCTAAATGATTTCAAATCAAAATGTTTTTCATTTTTATTTAAAATTGATCATAATTGGATGTTAA
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * ** *** * * * ** * * *
1060612 CATCAAAAAATGTGAAGTGGGTGCCATCCACTAACAAAAAAAAACCATTTATAGTCAATCATTCT
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCA
* * ** * *
1060677 TTAGAAAG-CTCTATTACTCGCTACAAATTGTTTTATAATTT
131 TTCGAAAGCCT-TGTTACTCGCTTTAAATGGTTTTATAATCT
* * ** * * * * *
1060718 TATAAATAATTTTAAATCAAAATATTTTTCATTTTTACTTAAAAGAGATCAGATTTTGATCTTAT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTT-T
** * * * *** *
1060783 G--TTGGGAAACATGGAGTGGATGCCATCCATT-ACCAACTGAAGTCCATTTATAGTTACTCATG
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATG
* * *** *
1060845 TCA-TCGAAACCCTTATTA-TATATTTTAAATAGTTTTATAAT-T
129 -CATTCGAAAGCCTTGTTACT-CGCTTTAAATGGTTTTATAATCT
* * * * * * * * * *
1060887 TATAAATGATTTTTAATGAAATTTTTTTTTATTTTTGATCAAAGCATATCTTAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* ** * * ** *
1060952 CATT-GGAAAACATGAAACGAAAGCCATACATTGAGAAGAAAAGTCCATTTATAGTCTTTTATGC
66 CATTAAG-AAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * * *
1061016 CTTTGAAAGCCTCGTTACTCACTTTCAGTAGTTTTTTAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * * * ***
1061058 TAGAAATAATTTTAAA-CTAAAATGTTTTTTATTTTTGATTAAAATTCATCATAATTGGATGTTT
1 TATAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT
* ** * * * * * *
1061122 GC-TTCAGGAAATGTGAAGCAGATA-CCATCCATTAACAAGAAATGTCC-TTTAATCGTCAATCA
65 GCATT-AAGAAACATGAAG-TGAAAGCCATCCATTGACAAGAAAAGTCCATTT-ATAGTCACTCA
** * * * * *
1061184 TGCCA-TCGAAAGCCTAATAACTCGCTTTTAGTGATTTTGTAATCT
127 TG-CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* ** * * **
1061229 TATAAATGATTTTGAGA-GGAAAT-TTTCTCCATTTGTGGTTAAAATTGATCATAATTGGATGTT
1 TATAAATGATTTT-AAATCAAAATCTTT-TTCATTTTTGGTTAAAACAGATCATAATTGGATGTT
* * * * * * * *
1061292 TGCATTGAGAAACATGAAG-CAGATCCTATCGATTGACAAGAAAATTCCATTTATAGTCATTAAT
64 TGCATTAAGAAACATGAAGTGAAAGCC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * *
1061356 GCCTTTGAAAACCTTGTTACTCGCTTTAAATGGTTTTATAATGT
128 GCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * ** * * *
1061400 TATAAATGATTTGAAATCAAAATATTTATCATTTTTTATTGAAATAAATCATAATT-GAGTGTTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGA-TGTTT
* * * * * * * *
1061464 GCCTTTAGAAACATGAAGTGGATGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCACTTATAC
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-G
* *** * *
1061529 CA-TCGAAAACCCAATGACTCG-ATTAAATTGGTTTTATAATCT
129 CATTCGAAAGCCTTGTTACTCGCTTTAAA-TGGTTTTATAATCT
* * * *
1061571 TATAAATAATTTCAAATCAAAATCTTTTTCATTTTTGGTTAAAAGAGATCATATTTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * ** * * * * ** *
1061636 CATTAGGTAATGTAAAG-CAAATGCCATCAATTGACACGAAAAGTCCACATACAGTCACTCATGC
66 CATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
1061700 CTAT-GAAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCT
130 AT-TCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
**
1061742 TATAAATGATTTTAAATCAAACA-CTTTAGCATTTTTGGTTAAAATCA-ATCATAATTGGATGTT
1 TATAAATGATTTTAAATCAAA-ATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTT
* * * * * *
1061805 TACCTTGAGAAACTTGAAG-CAATAGCCATCCATTGATAAG-AAAGTCCATTTATAGTCACTCAT
64 TGCATTAAGAAACATGAAGTGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-
* * * * * * *
1061868 TCCATT-GAAAGCTTTATTACTCCCTTTATATGATTTTATAAT-A
127 TGCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** * * * * *
1061911 TATAAATGATTTTAAAATTGAAATATTTTTCATTTTTGATTACAATAGATCAGAATTGGATGTTT
1 TATAAATGATTTT-AAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT
* ** * * **
1061976 ACATTGGGAAATATGAAG-CAAATGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATG
65 GCATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
1062040 CCA-TCGAAAACCTTGTTACTTGCTTTAGATGGTTTAATAATCC
129 -CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * *
1062083 TATAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTT-CAA-AGTATCATAATT-AAGTGTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGGA-TGTT
* * * ** * ** *
1062145 TTCATCAGGAAACATGAAGCAAAATCCATCTGTTGACAAGAAAAG-CC--TTAT--T-ATTCA--
64 TGCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
1062202 C-TT-TAAATG-GTT-TTAGAAT-G-TTATAAATGATTTTAAGTCAAACACT
129 CATTCGAAA-GCCTTGTT--ACTCGCTT-TAAATGGTTTT-A-T--AA-TCT
* * * * * ** ** ** * *
1062248 T-T--TTCATTTTCAGTTAAAATC--AATCATAATTGGATGT-TTACTTTGA-GA-AACTTGAAG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGG-T-TAAAAC--AGATCATAA-TTG--G
* * * * * * * **
1062305 CAATAGTCATCCATTAATAAA-A-AAAGTCTATTTATAGTCA-CTCATT-CCATCAAAAG-CC--
59 --AT-GT-TTGCATTAAGAAACATGAAGT-GA---A-AGCCATC-CATTGACAAGAAAAGTCCAT
* * * * * *
1062363 --AT-GTTACT--TGC-TT-TATATG-ATT-TTA-TAG-TATATAAATGATTTTA-AATC-
114 TTATAGTCACTCATGCATTCGA-AAGCCTTGTTACTCGCT-T-TAAATGGTTTTATAATCT
* ** * *
1062411 -A-AAAT-ATTTT---T------GTTTTGGA---TT--TT-AAACAGATAATAATTGGATGTTTA
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * * *
1062458 CATT-GGCAAACATGAAGCGAATGCCATGCATT-ATCAAGAAAAGTTCATTTATAGTCATTCATG
66 CATTAAG-AAACATGAAGTGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
1062521 CCTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAATCT
129 CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* ** * * * * *
1062564 AATAAATGATTTTAAATTGAAAT-TTTTTTATTTTTAGTTAAAATC-CATTATGATTGGATGTTT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTTT
* * ** * * * * * *
1062627 GCATTGATAAATGTGAATTGGATAG-CATCTATTGACAAG-AATGTCCATTTATAGTCATTAATG
65 GCATTAAGAAACATGAAGT-GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
1062690 CAATCGAAAGCCTAGTGT-CTCGC-TTAGAATGATTTTATAATCG
129 CATTCGAAAGCCTTGT-TACTCGCTTTA-AATGGTTTTATAATCT
** * * * * * * *
1062733 CCTAAATGATTTCACATCAGAAT-TAGTTTT-GTTTTTAGTTAAAATAGA--ATATATATAGATG
1 TATAAATGATTTTAAATCAAAATCT--TTTTCATTTTTGGTTAAAACAGATCATA-AT-TGGATG
* * ** * * * * *
1062794 TTAGCATTAGGAAATGTCAAGCCG-ATGCCATGCATTTACAAGAAAAGTCCATTTATAGTCACTC
62 TTTGCATTAAGAAACATGAAG-TGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * ** *
1062858 GTGCCTTCGAAAGCCTTGTTACTCTTTTTAAATGGTTTCATAATCT
126 ATGCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * *** * * *
1062904 TATAAATGATTGTAAATCATAATCTATTTT--TGTTTTGGTTAAGGTAGATCATATTTGGACGTG
1 TATAAATGATTTTAAATCAAAATCT-TTTTCAT-TTTTGGTTAAAACAGATCATAATTGGATGTT
* * * * * * * *
1062967 CGCATCAAGAAACATAAAG-CAAATGCCAACCATGGACAAGAAAAGTTCATTTCTAG-CTAGC-C
64 TGCATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTC-A-CTC
* *
1063029 ATGCCA-TCGAAA-CCATTGTTACTCCCTTTAAATGTTTTTATAAT-T
126 ATG-CATTCGAAAGCC-TTGTTACTCGCTTTAAATGGTTTTATAATCT
** * ** * ** * * * *
1063074 TAGGAATTATTTTAAATTGAACT-TTTTTTGTATTTGTTTAAAATAGATCATAATTGAATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * * * ** * * * * *
1063138 CATCAAAAAACGTGAAG-CAAAACTGAT-TTTCTCACAAGAATAGTCCATTTCTTGTCACTTATG
66 CATTAAGAAACATGAAGTGAAAGC-CATCCAT-TGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
1063201 CCTTCGAAAGCCTTGTTACTTGCTTCAAATGTTTTATAATTAAATATTTTT
129 CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTT-T-A-T--A-A--TCT
** * * * * * *
1063252 ATAATTTATGAATGATTTTAAAT-TGAACCTTTTTTATATTTGCTTAAAATAGAT-ACTAATTGA
1 -T-A--TA--AATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCA-TAATTGG
* * * ** * *** * * **
1063315 ATGTTTGCATTGAGAAACGTAAAGCAAAACCCATTTGTTGATAAGAATAA-TCCACTTCGAGTCA
59 ATGTTTGCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCA
* * * * *
1063379 CTAATGCCTTCGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAATCC
123 CTCATGCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * ** * * * * ** *
1063428 TGTAAATGATTTCAAGCCAAACTCTTTTTAATTTTTAGTAAAAATTGATCATAATTTGATG-TTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * * * ** * ** * * * * *
1063492 CATCATGAAGCGTGAA-ACAAATGCTATTTATTCACAATAAAAGTCTATTTATAGTCACCCATAC
66 CATTAAGAAACATGAAGTGAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
1063556 CTTTGAAAGTCTTGTTACTCGATTTAAATGCTTTTATAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
********** * * *
1063598 TATAAATGATTTTNNNNNNNNNNCTTTTTCATTTTTAGTTAAAACAGATTATATTTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* ** *
1063663 CATCAAGAAATGTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATATATAG-CAACTCATGC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGC
* * * *
1063727 CTTCGAAAGCCTTGTTACTCACTTTAAGTAGTTTTATTAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTA-TAATCT
** * * ** * *
1063770 TATAAATGATTAAAAATCAAAAAGCTTCTTCATTTTTCATCAAAATCA-ATCATAATTGGACGTT
1 TATAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGTT
** * * * * *** *
1063834 TGCATTGGGAAACATGAAATGGATGGCATCCATTGATTTGAAAAGTCCATTTATCA-TCACTC-C
64 TGCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCAT
** * * * ** *
1063897 GCCATT-GAAAGTATAGTGACTTGC-AAAACATGGTTTTAGAATCT
128 G-CATTCGAAAGCCTTGTTACTCGCTTTAA-ATGGTTTTATAATCT
* * *
1063941 TATAAATGATTTCAAATCAAAATCTTTATCA-TTTTGGTTAAAACAGATCATAATTAGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * ** * *
1064005 CATTAGGAAACTTGAAGTGAAAGATATCCATTGACAAGAAAAGTCCATTTATAGCCACTCATGCC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCA
* * * * * *
1064070 TTTGAAATCCTTATTACAT-GCTTTAAATAGTTGTATAATAT
131 TTCGAAAGCCTTGTTAC-TCGCTTTAAATGGTTTTATAATCT
* * * * *** *
1064111 TATAAATGATTTCAAAT-AAAATGTTTTT-ATTCTTAGTTAAATTTGATCATAATTGGATGTTTA
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** * * *
1064174 CA-TCGGTAA-AT---GT-AAAG-CA---AATG-C-----CA-TCCATTTATAGTCACTCATGTC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-C
* * * * * *
1064222 -GTCAAAAGCCTTGTTACTCGATTTAAATTGTTTTATGATCC
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** * * **
1064263 TA-GGATGATTTTAAATCAAAATCTTTTTCTTTTTTGGTTCAAACCTATCATAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** * * * * * *
1064327 CATTGCGAAGCATCAAGTGAAAGCCATCCATTGATTAAAAAAAGTCCATTTATAGTCACTTATTC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCA-TG
* * *
1064392 CA-TCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATGT
129 CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * ** * * * *
1064434 TGTAAGTGATTTTAAATTGAAATTTTTTTCATTTTTGCTT-AAGCATATCATAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** ** * * * * ** *
1064498 CATTGGGAAACATGAA-ACAGATGCCATCTATTGATAAGAAAAGTCCTTTTATAGTCAAGCATTC
66 CATTAAGAAACATGAAGTGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* ** ** *
1064562 CTTTAAAAATCTTGTTACTCGCCTTAAATGGTTTTATAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
* * * *
1064604 TGTAAATAATTTAAAATCAAGAAAT-TTTTT-ATTTTTGATTAAAATCA-ATCATAATTGGATGT
1 TATAAATGATTTTAAATC-A-AAATCTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGGATGT
* * * * * * * *
1064666 TTTCATTAGGAACCATGAAGT-AGATGCCATCCATTAATAAGAAAAGTCTATTTATAGTTACTCA
63 TTGCATTAAGAAACATGAAGTGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * ** * * *
1064730 TCCCTTCAAAAGCCTAATGACTCACTTTAAATTGTTTTATAATCT
127 TGCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** * ** ** * *
1064775 TCCAAATTATTTTAAATCAAAATGC-TTTTCATTTTTATTTAAAATTGATCATAATTGGATATTA
1 TATAAATGATTTTAAATCAAAAT-CTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT
* * * ** *** * * * * * *
1064839 ACATCAGGAAATGTGAAGTGGGTGCCATCCATTAAGAAAAAAAATCCATTTATAGTCAATCATTC
65 GCATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * ** **
1064904 TTTAGAAAGCCCTATTACTTGCTACAAATTATTTTATAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** ** * * * * *
1064946 TATAAATGATTTTAAATCAAAATAGTTTTCATTTTTACTTAAAAGAGATCAGATTTTGATCTTAT
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTT-T
** *** ** * *
1065011 G--TTGGGAAACAT-AGAGTGGTTGCCATCCATT-ACCAAGTGAAGTCCATTTATAGTTACTTAT
65 GCATTAAGAAACATGA-AGTGAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
1065072 GTCA-TCGAAACCCTTATTA-TATGTTTTAAATAGTTTTATAAT-T
128 G-CATTCGAAAGCCTTGTTACT-CGCTTTAAATGGTTTTATAATCT
* * ** * * * * **
1065115 TATAAATGATTTTTAATGAAAATCTTTTTTGTTTTTGATCAAAACATATCTTAATTGGACATTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
* * ** * * * * *
1065180 CATTAGGAAACATGAAGCGAAAATCATACATTGAGAAGAAAAGTTCATTTATAGT-ATTTTATGC
66 CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-CTCATGC
* * * * * * *
1065244 CTTTGAAAGCCTCGTTACTCACTTTTAGTAGTTTT-TAAATCT
130 ATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTAT-AATCT
* * * * ***
1065286 TATAAATGATTTTAAATTAAAATATTTTTTATTTTTGGTTCAAATTCATCATAATTGGATGTTTG
1 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
** ** * * * * *
1065351 C-TTCTGGAAATGTGAAGCAGATA-CCATCCATTAACAAGAAAAGTCC-TTTAATTGTCAATCAT
66 CATT-AAGAAACATGAAG-TGAAAGCCATCCATTGACAAGAAAAGTCCATTT-ATAGTCACTCAT
** * * *
1065413 GCCA-TCGAAAGCCTAATAACTCGCTTTAAAGGGTTTTGTAATCT
128 G-CATTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
** * ** ***
1065457 TATAAATGATTTTGAAA-GGAAAT-TTTCTCCATTCATGGTTAAAATTTATCATAATTGGATGTT
1 TATAAATGATTTT-AAATCAAAATCTTT-TTCATTTTTGGTTAAAACAGATCATAATTGGATGTT
* * * * * * * * * *
1065520 TGCATTGAGAAACATGAAGCG-GATCCTATCGATTGATAAGAAAATTCCAGTTATAGTCATTAAT
64 TGCATTAAGAAACATGAAGTGAAAGCC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
1065584 GCCTTTGAAAACCTTGTTACTCGCTTTAAATGGTT
128 GCATTCGAAAGCCTTGTTACTCGCTTTAAATGGTT
1065619 NNNNNNNNNN
Statistics
Matches: 5276, Mismatches: 1460, Indels: 729
0.71 0.20 0.10
Matches are distributed among these distances:
139 7 0.00
140 8 0.00
141 1 0.00
142 8 0.00
143 4 0.00
144 5 0.00
145 2 0.00
146 5 0.00
147 2 0.00
148 7 0.00
149 9 0.00
150 4 0.00
151 25 0.00
152 124 0.02
153 46 0.01
154 33 0.01
155 10 0.00
156 8 0.00
158 4 0.00
159 17 0.00
160 27 0.01
161 8 0.00
162 21 0.00
163 18 0.00
164 20 0.00
165 6 0.00
167 24 0.00
168 201 0.04
169 549 0.10
170 1368 0.26
171 1908 0.36
172 268 0.05
173 368 0.07
174 20 0.00
175 2 0.00
176 1 0.00
177 1 0.00
178 2 0.00
179 2 0.00
180 1 0.00
181 1 0.00
182 1 0.00
183 3 0.00
184 120 0.02
185 7 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (171 bp):
TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTTG
CATTAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCA
TTCGAAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCT
Found at i:1062020 original size:341 final size:341
Alignment explanation
Indices: 1059971--1065538 Score: 2282
Period size: 341 Copynumber: 16.4 Consensus size: 341
1059961 GCAAATGCTA
* * ** * ** *
1059971 TCCATTTATAGTCACTCATGTCGTCAAAAGCCTTGTTACTCGA-TTTAAATTATTTTATAATCCT
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTC-ACTTTAAATGGTTTTATAATCTT
** * * * * *
1060035 AGGAATGATTTTAAATCAAAATCTTTTTCTTTTTTGGTTCAAACCTATCACAATTGGATGTTTGC
65 ATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGC
* * * * ** * * * *
1060100 ATTGCGAAACATCAAGTGAAAACCATCCATTGATAAAAAAACAGTCCATTTATAGTCACTTATTG
130 CTTGAGAAACATGAAGTCAATGCCATCCATTG--ACAAGAA-AGTCCATTTATAGTCACTCATTC
* * ** * *
1060165 CATC-ACAAGCCTAGTTACTTGCTTTAAAT-AGTTTTATAATGATGTAAGTGATTTTAAATTGAA
192 CATCGA-AAGCCTAATTACTCGCTTTAAATGA-TTTTATAATCTTATAAATGATTTTAAATTGAA
* * **
1060228 TTTTTTTTCATTTTTGCTTAAACAT--ATCATAATTGGATGTTTGCATTGGGAAACATGAAGCGG
255 ATTTTTTTCATTTTTGATTAAA-ATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAA
*
1060291 ATGCCATTCATTGACAAGAAAAG
319 ATGCCATCCATTGACAAGAAAAG
* * * * * *
1060314 TCCTTTTATAGTCACGCAT-TCTGTTAAAAGCCTTATTATTCACCTTAAATGGTTTTATAATCTT
1 TCCATTTATAGTCACTCATGCCT-TTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTT
* * * * *
1060378 GTAAATAATTTAAAATCAAAAACTTTTTTATTTTTGGTTAAAATCAATCATAATTGGAT-TTTGC
65 ATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGC
* * * * * * * ** * *
1060442 ATTAAGAACCATGAAGTCGATGCCATCCATTAATAAAAAAAGTCTGTTTATAGTTACTCATCCCA
130 CTTGAGAAACATGAAGTCAATGCCATCCATTGA-CAAGAAAGTCCATTTATAGTCACTCATTCCA
* * * * * * ** *
1060507 TCAAAAGCCTAATGACTAGCTTTAAATTATTTTATAATCTTCTAAATGATTTCAAATCAAAATGT
194 TCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATTGAAATTT
* ** **** ** ****
1060572 TTTTCATTTTT-ATTTAAAATTGATCATAATTGGATGTTAACATCAAAAAATGTGAAGTGGGTGC
259 TTTTCATTTTTGA-TTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAAATGC
* * * *
1060636 CATCCACTAACAAAAAAAA
323 CATCCATTGACAAGAAAAG
* * * * ** * *
1060655 ACCATTTATAGTCAATCAT-TCTTTAGAAAG-CTCTATTACTCGCTACAAATTGTTTTATAATTT
1 TCCATTTATAGTCACTCATGCCTTT-GAAAGCCT-TATTACTCACTTTAAATGGTTTTATAATCT
* * ** * * * * *
1060718 TATAAATAATTTTAAATCAAAATATTTTTCATTTTTACTTAAAA-GAGATCAGATTTTGATCTTA
64 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCA-ATCATAATTGGATGTT-
* * ** *
1060782 TG--TTGGGAAACATGGAGTGGATGCCATCCATT-ACCAACTG-AAGTCCATTTATAGTTACTCA
127 TGCCTTGAGAAACATGAAGTCAATGCCATCCATTGA-CAA--GAAAGTCCATTTATAGTCACTCA
* * *** *
1060843 TGT-CATCGAAACCCTTATTA-TATATTTTAAAT-AGTTTTATAAT-TTATAAATGATTTTTAA-
189 T-TCCATCGAAAGCCTAATTACT-CGCTTTAAATGA-TTTTATAATCTTATAAATGATTTTAAAT
* * ** * * *
1060903 TGAAATTTTTTTTTATTTTTGATCAAAGCATATCTTAATTGGATGTTTGCATTGGAAAACATGAA
251 TGAAA-TTTTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAA
* * *
1060968 ACGAAA-GCCATACATTGAGAAGAAAAG
315 GC-AAATGCCATCCATTGACAAGAAAAG
** * ** * * * *
1060995 TCCATTTATAGTCTTTTATGCCTTTGAAAGCCTCGTTACTCACTTTCAGTAGTTTTTTAATCTTA
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* * * * *
1061060 GAAATAATTTTAAA-CTAAAATGTTTTTTATTTTTGATTAAAATTC-ATCATAATTGGATGTTTG
66 TAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAA-TCAATCATAATTGGATGTTTG
* ** * * * *
1061123 -CTTCAGGAAATGTGAAG-CAGATACCATCCATTAACAAGAAATGTCC-TTTAATCGTCAATCAT
129 CCTTGA-GAAACATGAAGTCA-ATGCCATCCATTGACAAGAAA-GTCCATTT-ATAGTCACTCAT
* * * * * * *
1061185 GCCATCGAAAGCCTAATAACTCGCTTTTAGTGATTTTGTAATCTTATAAATGATTTTGAGA-GGA
190 TCCATCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTT-AAATTGA
* * * * * * *
1061249 AATTTTCTCCATTTGTGGTTAAAATTGATCATAATTGGATGTTTGCATTGAGAAACATGAAGCAG
254 AATTTTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAA
* *
1061314 AT-CCTATCGATTGACAAGAAAAT
319 ATGCC-ATCCATTGACAAGAAAAG
* * * * * *
1061337 TCCATTTATAGTCATTAATGCCTTTGAAAACCTTGTTACTCGCTTTAAATGGTTTTATAATGTTA
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* * * ** * *
1061402 TAAATGATTTGAAATCAAAATATTTATCATTTTTTATTGAAATAAATCATAATT-GAGTGTTTGC
66 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGA-TGTTTGC
* ** * * * *
1061466 CTTTAGAAACATGAAGTGGATGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCACTTATACCA
130 CTTGAGAAACATGAAGTCAATGCCATCCATTGACAAG-AAAGTCCATTTATAGTCACTCATTCCA
* * * * * * * ** *
1061531 TCGAAAACCCAATGACTCG-ATTAAATTGGTTTTATAATCTTATAAATAATTTCAAATCAAAATC
194 TCGAAAGCCTAATTACTCGCTTTAAA-TGATTTTATAATCTTATAAATGATTTTAAATTGAAATT
* * * * * ** *
1061595 TTTTTCATTTTTGGTTAAAAGAGATCATATTTGGATGTTTGCATTAGGTAATGTAAAGCAAATGC
258 TTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAAATGC
* *
1061660 CATCAATTGACACGAAAAG
323 CATCCATTGACAAGAAAAG
** * * * *
1061679 TCCACATACAGTCACTCATGCCTATGAAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCTTA
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
** *
1061744 TAAATGATTTTAAATCAAACA-CTTTAGCATTTTTGGTTAAAATCAATCATAATTGGATGTTTAC
66 TAAATGATTTTAAATCAAA-ATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGC
* *
1061808 CTTGAGAAACTTGAAG-CAATAGCCATCCATTGATAAGAAAGTCCATTTATAGTCACTCATTCCA
130 CTTGAGAAACATGAAGTCAAT-GCCATCCATTGACAAGAAAGTCCATTTATAGTCACTCATTCCA
* * * * * * *
1061872 TTGAAAGCTTTATTACTCCCTTTATATGATTTTATAAT-ATATAAATGATTTTAAAATTGAAATA
194 TCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTT-AAATTGAAATT
* * * *
1061936 TTTTTCATTTTTGATTACAATAGATCAGAATTGGATGTTTACATTGGGAAATATGAAGCAAATGC
258 TTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAAATGC
1062001 CATCCATTGACAAGAAAAG
323 CATCCATTGACAAGAAAAG
** * * * * ** * * *
1062020 TTTATTTATAGTCACTCATGCCATCGAAAACCTTGTTACTTGCTTTAGATGGTTTAATAATCCTA
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* * *
1062085 TAAATGATTTTAAATCAAAATATTTTTCATTTTTGGTTCAAAGT--ATCATAATT-AAGTGTTT-
66 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTT-AAAATCAATCATAATTGGA-TGTTTG
* * * ** *
1062146 TCATCAGGAAACATGAAG-CAAAAT-CCATCTGTTGACAAGAAAAG-CC--TTATTATTCACT--
129 CCTTGA-GAAACATGAAGTC--AATGCCATCCATTGACAAG-AAAGTCCATTTA-TAGTCACTCA
** ** * * * * * *
1062204 TTAAAT-G---GTTTTA-GAAT-G-TTATAAATGATTTTA-AGTC----AAA-CACTTT---TT-
189 TTCCATCGAAAGCCTAATTACTCGCTT-TAAATGATTTTATAATCTTATAAATGATTTTAAATTG
* * * * *
1062252 -CA---TTTTCA-----G-TTAAAATCA-ATCATAATTGGATGTTTACTTTGAGAAACTTGAAGC
253 AAATTTTTTTCATTTTTGATTAAAAT-AGATCATAATTGGATGTTTGCATTGGGAAACATGAAGC
* * * *
1062306 -AATAGTCATCCATTAATAAAAAAAG
317 AAAT-GCCATCCATTGACAAGAAAAG
* * * ** * * ** * * * *
1062331 TCTATTTATAGTCACTCATTCCATCAAAAGCCATGTTACTTGCTTTATATGATTTTATAGT-ATA
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* * * *
1062395 TAAATGATTTTAAATCAAAATATTTTT--GTTTTGGATTTTAAA-CAGATAATAATTGGATGTTT
66 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGG--TTAAAATCA-ATCATAATTGGATGTTT
* * * * *
1062457 ACATTG-GCAAACATGAAG-CGAATGCCATGCATT-ATCAAGAAAAGTTCATTTATAGTCATTCA
128 GCCTTGAG-AAACATGAAGTC-AATGCCATCCATTGA-CAAG-AAAGTCCATTTATAGTCACTCA
* * * ** * *
1062519 TGCCTTTGAAAGCCTTGTTACTCGCTTTAAAT-AGTTTTGTAATCTAATAAATGATTTTAAATTG
189 TTCCATCGAAAGCCTAATTACTCGCTTTAAATGA-TTTTATAATCTTATAAATGATTTTAAATTG
** * * ** **
1062583 AAATTTTTTT-ATTTTT-AGTTAAAATCCATTATGATTGGATGTTTGCATTGATAAATGTGAATT
253 AAATTTTTTTCATTTTTGA-TTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAA--
* * * *
1062646 GGATA-G-CATCTATTGACAAG-AATG
315 GCAAATGCCATCCATTGACAAGAAAAG
* * ** * * *
1062670 TCCATTTATAGTCATTAATGCAATCGAAAGCC-TAGTGT-CTCGC-TTAGAATGATTTTATAATC
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTA-T-TACTCACTTTA-AATGGTTTTATAATC
*** * * * * * * *
1062732 GCCTAAATGATTTCACATCAGAAT-TAGTTTT-GTTTTTAGTTAAAATAGAAT-AT-ATATAGAT
63 TTATAAATGATTTTAAATCAAAATCT--TTTTCATTTTTGGTTAAAAT-CAATCATAAT-TGGAT
* * * * * * *
1062793 GTTAGCATT-AGGAA-ATGTCAAGCCGATGCCATGCATTTACAAGAAAAGTCCATTTATAGTCAC
124 GTTTGCCTTGAGAAACATG--AAGTCAATGCCATCCATTGACAAG-AAAGTCCATTTATAGTCAC
* * * ** ** * * *
1062856 TCGTGCCTTCGAAAGCCTTGTTACTCTTTTTAAATGGTTTCATAATCTTATAAATGATTGTAAA-
186 TCATTCCATCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAAT
* * * ** * * ** *** *
1062920 TCATAATCTATTTTT--GTTTTGGTTAAGGTAGATCATATTTGGACGTGCGCATCAAGAAACATA
251 TGA-AAT-T-TTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATG
* *
1062983 AAGCAAATGCCAACCATGGACAAGAAAAG
313 AAGCAAATGCCATCCATTGACAAGAAAAG
* * * * * * *
1063012 TTCATTTCTAG-CTAGC-CATGCCATCGAAA-CCATTGTTACTCCCTTTAAATGTTTTTATAAT-
1 TCCATTTATAGTC-A-CTCATGCCTTTGAAAGCC-TTATTACTCACTTTAAATGGTTTTATAATC
** * ** * ** * * *
1063073 TTAGGAATTATTTTAAATTGAACT-TTTTTTGTATTTGTTTAAAAT-AGATCATAATTGAATGTT
63 TTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCA-ATCATAATTGGATGTT
* ** * * ** * ** * * * *
1063136 TGCATCAAAAAACGTGAAG-CAAAACTGAT-TTTCTCACAAGAATAGTCCATTTCTTGTCACTTA
127 TGCCTTGAGAAACATGAAGTCAATGC-CATCCAT-TGACAAGAA-AGTCCATTTATAGTCACTCA
* * ** * * * *
1063199 TGCCTTCGAAAGCCTTGTTACTTGCTTCAAATGTTTTATAATTAAATATTTTTATAATTTATGAA
189 TTCCATCGAAAGCCTAATTACTCGCTTTAAATGATTT-T-A-T--A-A--TCT-T-A--TA--AA
** * * *
1063264 TGATTTTAAATTGAACCTTTTTT-ATATTTGCTTAAAATAGAT-ACTAATTGAATGTTTGCATTG
240 TGATTTTAAATTGAAATTTTTTTCATTTTTGATTAAAATAGATCA-TAATTGGATGTTTGCATTG
* * * ** *** *
1063327 AGAAACGTAAAGCAAAACCCATTTGTTGATAAGAATAA-
304 GGAAACATGAAGCAAATGCCATCCATTGACAAGAA-AAG
* ** * * * ** * * *
1063365 TCCACTTCGAGTCACTAATGCCTTCGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAATCCTG
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* ** * * * * ** *
1063430 TAAATGATTTCAAGCCAAACTCTTTTTAATTTTTAGTAAAAATTGATCATAATTTGATG-TTG-C
66 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCC
* * * * * * ** * * * * *
1063493 ATCATGAAGCGTGAA-ACAAATGCTATTTATTCACAATAAAAGTCTATTTATAGTCACCCATACC
131 TTGA-GAAACATGAAGTC-AATGCCATCCATTGACAA-GAAAGTCCATTTATAGTCACTCATTCC
* * * ** * * ***********
1063557 TTTGAAAGTCTTGTTACTCGATTTAAATGCTTTTATAATCTTATAAATGATTTTNNNNNNNNNNC
193 ATCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATTGAAATT
* * * *** ** *
1063622 TTTTTCATTTTT-AGTTAAAACAGATTATATTTGGATGTTTGCATCAAGAAATGTGAAGTGAAA-
258 TTTTTCATTTTTGA-TTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAG-CAAAT
1063685 GCCATCCATTGACAAGAAAAG
321 GCCATCCATTGACAAGAAAAG
* * * * *
1063706 TCCATATATAG-CAACTCATGCCTTCGAAAGCCTTGTTACTCACTTTAAGTAGTTTTATTAATCT
1 TCCATTTATAGTC-ACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTA-TAATCT
** * * ** * *
1063770 TATAAATGATTAAAAATCAAAAAGCTTCTTCATTTTTCATCAAAATCAATCATAATTGGACGTTT
64 TATAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTT
* * * ** * *** **
1063835 GCATTGGGAAACATGAAATGGATGGCATCCATTGATTTGAAAAGTCCATTTATCA-TCACTC-CG
128 GCCTTGAGAAACATGAAGTCAATGCCATCCATTGACAAG-AAAGTCCATTTAT-AGTCACTCATT
* ** * * * ** * * * **
1063898 CCATTGAAAGTATAGTGACTTGC-AAAACATGGTTTTAGAATCTTATAAATGATTTCAAATCAAA
191 CCATCGAAAGCCTAATTACTCGCTTTAA-ATGATTTTATAATCTTATAAATGATTTTAAATTGAA
* * * * * * * *
1063962 ATCTTTATCA-TTTTGGTTAAAACAGATCATAATTAGATGTTTGCATTAGGAAACTTGAAGTGAA
255 ATTTTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAG-CAA
**
1064026 A-GATATCCATTGACAAGAAAAG
319 ATGCCATCCATTGACAAGAAAAG
* * * * * *
1064048 TCCATTTATAGCCACTCATGCCTTTGAAATCCTTATTACAT-GCTTTAAATAGTTGTATAATATT
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTAC-TCACTTTAAATGGTTTTATAATCTT
* * * * * ** *
1064112 ATAAATGATTTCAAAT-AAAATGTTTTT-ATTCTTAGTTAAATTTGATCATAATTGGATGTTTAC
65 ATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGC
* * * * * * *
1064175 ATCG-GTAA-AT---GT-AAAG-CA---AATG-C----CA-TCCATTTATAGTCACTCATGT-CG
130 CTTGAGAAACATGAAGTCAATGCCATCCATTGACAAGAAAGTCCATTTATAGTCACTCAT-TCCA
* ** * * * ** ** *
1064223 TCAAAAGCCTTGTTACTCGATTTAAATTG-TTTTATGATCCTA-GGATGATTTTAAATCAAAATC
194 TCGAAAGCCTAATTACTCGCTTTAAA-TGATTTTATAATCTTATAAATGATTTTAAATTGAAATT
* * * *** * * * *
1064286 TTTTTCTTTTTTGGTTCAAACCTATCATAATTGGATGTTTGCATTGCGAAGCATCAAGTGAAA-G
258 TTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAG-CAAATG
* *
1064350 CCATCCATTGATTAAAAAAAG
322 CCATCCATTGA-CAAGAAAAG
* * * * ** *
1064371 TCCATTTATAGTCACTTATTCCATCGAAAGCC-TAGTTACTTGCTTTAAATGGTTTTATAATGTT
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTA-TTACTCACTTTAAATGGTTTTATAATCTT
* * ** * * *
1064435 GTAAGTGATTTTAAATTGAAATTTTTTTCATTTTTGCTT--AAGCATATCATAATTGGATGTTTG
65 ATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCA-ATCATAATTGGATGTTTG
* * * * * * **
1064498 CATTGGGAAACATGAA-ACAGATGCCATCTATTGATAAGAAAAGTCCTTTTATAGTCAAGCATTC
129 CCTTGAGAAACATGAAGTCA-ATGCCATCCATTGACAAG-AAAGTCCATTTATAGTCACTCATTC
* ** ** ** * * * * * *
1064562 CTTTAAAAATCTTGTTACTCGCCTTAAATGGTTTTATAATCTTGTAAATAATTTAAAATCAAGAA
192 CATCGAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAAT--TGAA
* * * * *
1064627 A-TTTTTT-ATTTTTGATTAAAATCA-ATCATAATTGGATGTTTTCATTAGGAACCATGAAGTAG
255 ATTTTTTTCATTTTTGATTAAAAT-AGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAA
* *
1064689 ATGCCATCCATTAATAAGAAAAG
319 ATGCCATCCATTGACAAGAAAAG
* * * ** * * * *
1064712 TCTATTTATAGTTACTCATCCCTTCAAAAGCCTAATGACTCACTTTAAATTGTTTTATAATCTTC
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
* * ** ** * **
1064777 CAAATTATTTTAAATCAAAATGC-TTTTCATTTTTATTTAAAATTGATCATAATTGGAT-ATTAA
66 TAAATGATTTTAAATCAAAAT-CTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGC
* * ** *** * * *
1064840 CATCAGGAAATGTGAAGTGGGTGCCATCCATTAAGA-AAAAAAATCCATTTATAGTCAATCATTC
130 CTTGA-GAAACATGAAGTCAATGCCATCCATT--GACAAGAAAGTCCATTTATAGTCACTCATTC
** * * ** * **
1064904 TTTAGAAAGCCCT-ATTACTTGCTACAAATTATTTTATAATCTTATAAATGATTTTAAATCAAAA
192 CATCGAAAG-CCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATTGAAA
** * * * * * **
1064968 TAGTTTTCATTTTT-ACTTAAAAGAGATCAGATTTTGATCTTATG--TTGGGAAACAT-AGAGTG
256 TTTTTTTCATTTTTGA-TTAAAATAGATCATAATTGGATGTT-TGCATTGGGAAACATGA-AGCA
** **
1065029 GTTGCCATCCATT-ACCAAGTGAAG
318 AATGCCATCCATTGA-CAAGAAAAG
* * * * * * * *
1065053 TCCATTTATAGTTACTTATGTCATCGAAACCCTTATTA-T-ATGTTTTAAATAGTTTTATAAT-T
1 TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCA--CTTTAAATGGTTTTATAATCT
* * ** * * * **
1065115 TATAAATGATTTTTAATGAAAATCTTTTTTGTTTTTGATCAAAA-CATATCTTAATTGGACATTT
64 TATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCA-ATCATAATTGGATGTTT
* *** * * * * *
1065179 GCATT-AGGAAACATGAAG-CGAAAATCATACATTGAGAAGAAAAGTTCATTTATAGT-ATTTTA
128 GCCTTGA-GAAACATGAAGTC-AATGCCATCCATTGACAAG-AAAGTCCATTTATAGTCA-CTCA
* * * ** * * * * *
1065241 TGCCTTTGAAAGCCTCGTTACTCACTTTTAGTAGTTTTTA-AATCTTATAAATGATTTTAAATTA
189 TTCCATCGAAAGCCTAATTACTCGCTTTAAAT-GATTTTATAATCTTATAAATGATTTTAAATTG
* * ** * **
1065305 AAATATTTTTT-ATTTTTGGTTCAAATTCATCATAATTGGATGTTTGC-TTCTGGAAATGTGAAG
253 AAAT-TTTTTTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATT-GGGAAACATGAAG
* * *
1065368 CAGATACCATCCATTAACAAGAAAAG
316 CAAATGCCATCCATTGACAAGAAAAG
* * * * * * * * *
1065394 TCC-TTTAATTGTCAATCATGCCATCGAAAGCCTAATAACTCGCTTTAAAGGGTTTTGTAATCTT
1 TCCATTT-ATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTT
** * ** **
1065458 ATAAATGATTTTGAAA-GGAAAT-TTTCTCCATTCATGGTTAAAATTTATCATAATTGGATGTTT
65 ATAAATGATTTT-AAATCAAAATCTTT-TTCATTTTTGGTTAAAATCAATCATAATTGGATGTTT
*
1065521 GCATTGAGAAACATGAAG
128 GCCTTGAGAAACATGAAG
1065539 CGGATCCTAT
Statistics
Matches: 3922, Mismatches: 1026, Indels: 555
0.71 0.19 0.10
Matches are distributed among these distances:
308 6 0.00
309 2 0.00
310 39 0.01
311 145 0.04
312 5 0.00
313 6 0.00
314 3 0.00
315 2 0.00
316 1 0.00
317 6 0.00
319 3 0.00
320 5 0.00
321 48 0.01
322 91 0.02
323 75 0.02
324 30 0.01
325 10 0.00
326 9 0.00
327 7 0.00
328 3 0.00
329 1 0.00
330 8 0.00
331 15 0.00
332 5 0.00
333 6 0.00
334 4 0.00
335 4 0.00
336 3 0.00
337 7 0.00
338 43 0.01
339 106 0.03
340 751 0.19
341 1011 0.26
342 940 0.24
343 223 0.06
344 43 0.01
345 4 0.00
346 3 0.00
348 3 0.00
349 2 0.00
350 1 0.00
351 1 0.00
352 10 0.00
353 100 0.03
354 96 0.02
355 36 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (341 bp):
TCCATTTATAGTCACTCATGCCTTTGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTA
TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCC
TTGAGAAACATGAAGTCAATGCCATCCATTGACAAGAAAGTCCATTTATAGTCACTCATTCCATC
GAAAGCCTAATTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAATTGAAATTTTT
TTCATTTTTGATTAAAATAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGCAAATGCCAT
CCATTGACAAGAAAAG
Found at i:1062667 original size:481 final size:481
Alignment explanation
Indices: 1061705--1062607 Score: 1289
Period size: 481 Copynumber: 1.9 Consensus size: 481
1061695 CATGCCTATG
1061705 AAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTTAAATCAAACACTTTA
1 AAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTTAAATCAAACACTTTA
**
1061770 GCATTTTTGGTTAAAATCAATCATAATTGGATGTTTACCTTGAGAAACTTGAAGCAATAGCCATC
66 GCATTTTCAGTTAAAATCAATCATAATTGGATGTTTACCTTGAGAAACTTGAAGCAATAGCCATC
* * ** **
1061835 CATTGATAAGAAAGTCCATTTATAGTCACTCATTCCATTGAAAGCTTTATTACTCCCTTTATATG
131 CATTAATAAAAAAGTCCATTTATAGTCACTCATTCCATCAAAAGCCATATTACTCCCTTTATATG
** * * *
1061900 ATTTTATAATATATAAATGATTTTAAAATTGAAATATTTTTCATTTTTGATTACAATAGATCAGA
196 ATTTTATAATATATAAATGATTTTAAAATCAAAATATTTTTCATTTTGGATTACAACAGATAAGA
* * *
1061965 ATTGGATGTTTACATTGGGAAATATGAAGCAAATGCCATCCATTGACAAGAAAAGTTTATTTATA
261 ATTGGATGTTTACATTGGCAAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTTCATTTATA
* * *
1062030 GTCACTCATGCCATCGAAAACCTTGTTACTTGCTTTAGATGGTTTAATAATCCTATAAATGATTT
326 GTCACTCATGCCATCGAAAACCTTGTTACTCGCTTTAAATAGTTTAATAATCCTATAAATGATTT
* * *
1062095 TAAATCAAAATATTTTTCATTTTTGGTTCAAAGTATCATAATTAAGTGTTTTCATCAGGAAACAT
391 TAAATCAAAATATTTTTCATTTTTAGTTCAAAATATCATAATTAAGTGTTTGCATCAGGAAACAT
*
1062160 GAAGCAAAATCCATCTGTTGACAAGA
456 GAAGCAAAATCCATCTATTGACAAGA
* * *
1062186 AAAGCCTTATTATTCACTTTAAATGGTTTTAGAATGTTATAAATGATTTTAAGTCAAACACTTTT
1 AAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTTAAATCAAACACTTTA
* * *
1062251 TCATTTTCAGTTAAAATCAATCATAATTGGATGTTTACTTTGAGAAACTTGAAGCAATAGTCATC
66 GCATTTTCAGTTAAAATCAATCATAATTGGATGTTTACCTTGAGAAACTTGAAGCAATAGCCATC
* * **
1062316 CATTAATAAAAAAAGTCTATTTATAGTCACTCATTCCATCAAAAGCCATGTTACTTGCTTTATAT
131 CATTAAT-AAAAAAGTCCATTTATAGTCACTCATTCCATCAAAAGCCATATTACTCCCTTTATAT
* *
1062381 GATTTTATAGTATATAAATGATTTT-AAATCAAAATATTTTT-GTTTTGGATTTTA-AACAGATA
195 GATTTTATAATATATAAATGATTTTAAAATCAAAATATTTTTCATTTTGGA--TTACAACAGATA
* * *
1062443 ATAATTGGATGTTTACATTGGCAAACATGAAGCGAATGCCATGCATT-ATCAAGAAAAGTTCATT
258 AGAATTGGATGTTTACATTGGCAAACATGAAGCAAATGCCATCCATTGA-CAAGAAAAGTTCATT
* * * * **
1062507 TATAGTCATTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATAGTTTTGTAAT-CTAATAAAT
322 TATAGTCACTCATGCCATCGAAAACCTTGTTACTCGCTTTAAATAGTTTAATAATCCT-ATAAAT
** *
1062571 GATTTTAAATTGAAAT-TTTTTTATTTTTAGTT-AAAAT
386 GATTTTAAATCAAAATATTTTTCATTTTTAGTTCAAAAT
1062608 CCATTATGAT
Statistics
Matches: 372, Mismatches: 45, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
479 4 0.01
480 23 0.06
481 270 0.73
482 75 0.20
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (481 bp):
AAAGCCTTATTATTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTTAAATCAAACACTTTA
GCATTTTCAGTTAAAATCAATCATAATTGGATGTTTACCTTGAGAAACTTGAAGCAATAGCCATC
CATTAATAAAAAAGTCCATTTATAGTCACTCATTCCATCAAAAGCCATATTACTCCCTTTATATG
ATTTTATAATATATAAATGATTTTAAAATCAAAATATTTTTCATTTTGGATTACAACAGATAAGA
ATTGGATGTTTACATTGGCAAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTTCATTTATA
GTCACTCATGCCATCGAAAACCTTGTTACTCGCTTTAAATAGTTTAATAATCCTATAAATGATTT
TAAATCAAAATATTTTTCATTTTTAGTTCAAAATATCATAATTAAGTGTTTGCATCAGGAAACAT
GAAGCAAAATCCATCTATTGACAAGA
Found at i:1063388 original size:184 final size:185
Alignment explanation
Indices: 1063056--1063425 Score: 521
Period size: 184 Copynumber: 2.0 Consensus size: 185
1063046 GTTACTCCCT
* * * * *
1063056 TTAAATGTTTTTATAATTTAGGAATTATTTTAAATTGAACTTTTTTTGTATTTGTTTAAAATAGA
1 TTAAATATTTTTATAATTTAGGAATGATTTTAAATTGAACCTTTTTTATATTTGCTTAAAATAGA
* ** * *
1063121 TCATAATTGAATGTTTGCATCAAAAAACGTGAAGCAAAACTGATTTTCTCACAAGAATAGTCCAT
66 TCATAATTGAATGTTTGCATCAAAAAACGTAAAGCAAAACCCATTTTCTCACAAGAATAATCCAC
** *
1063186 TTCTTGTCACTTATGCCTTCGAAAGCCTTGTTACTTGCTTCAAATG-TTTTATAA
131 TTCGAGTCACTAATGCCTTCGAAAGCCTTGTTACTTGCTTCAAATGATTTTATAA
*
1063240 TTAAATATTTTTATAATTTATGAATGATTTTAAATTGAACCTTTTTTATATTTGCTTAAAATAGA
1 TTAAATATTTTTATAATTTAGGAATGATTTTAAATTGAACCTTTTTTATATTTGCTTAAAATAGA
** * * *
1063305 T-ACTAATTGAATGTTTGCATTGAGAAACGTAAAGCAAAACCCATTTGT-TGATAAGAATAATCC
66 TCA-TAATTGAATGTTTGCATCAAAAAACGTAAAGCAAAACCCATTT-TCTCACAAGAATAATCC
*
1063368 ACTTCGAGTCACTAATGCCTTCGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAA
129 ACTTCGAGTCACTAATGCCTTCGAAAGCCTTGTTACTTGCTTCAAATGATTTTATAA
1063425 T
1 T
1063426 CCTGTAAATG
Statistics
Matches: 163, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
183 1 0.01
184 152 0.93
185 10 0.06
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (185 bp):
TTAAATATTTTTATAATTTAGGAATGATTTTAAATTGAACCTTTTTTATATTTGCTTAAAATAGA
TCATAATTGAATGTTTGCATCAAAAAACGTAAAGCAAAACCCATTTTCTCACAAGAATAATCCAC
TTCGAGTCACTAATGCCTTCGAAAGCCTTGTTACTTGCTTCAAATGATTTTATAA
Found at i:1066347 original size:171 final size:168
Alignment explanation
Indices: 1065799--1066428 Score: 567
Period size: 171 Copynumber: 3.7 Consensus size: 168
1065789 NNNNNNNNNN
* * *
1065799 TTTATAATCTTATAAATAATTTCAAATCAAAATCTTTTTCATTTTTGGTTAAAATAGATCATATT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAGATCATAAT
* * * * * ** * *
1065864 TGGATGTTTGCATTAGGTAATGTGAAGCAAATGCCATCAATTGACACA-AAAAGTCCACTTACAG
66 TGGATGTTTACATTGGGAAATATGAAGC-AATGCCATCCATTGACA-AGAAAAGTTTATTTATAG
1065928 TCACTCATGCCTATGAAAGCCTTATTA-TTCGCTTTAAATGG
129 TCACTCATGCC-ATGAAAGCCTTATTACTT-GCTTTAAATGG
* ********** * *
1065969 TTTTAGAATCTTANNNNNNNNNNTAAATCAAACA-CTTTTGCATTTTTGGTTAAAATCA-ATTAT
1 -TTTATAATCTTATAAATGATTTTAAATCAAA-ATCTTTTTCATTTTTGGTTAAAAT-AGATCAT
* * *
1066032 AATTGGATGTTTACCTTGGGAAACT-TAAAGCAATAGCCATCCATTGATAAGAAAAGTTTATTTA
63 AATTGGATGTTTACATTGGGAAA-TATGAAGCAAT-GCCATCCATTGACAAGAAAAGTTTATTTA
* * ** * **
1066096 TAGTCACTCATTCTATTGAAAGCCTTATTACTCCCTTTATATTAA
126 TAGTCACTCATGCCA-TGAAAGCCTTATTACTTGCTTTA-AATGG
* * * * *
1066141 TTTATAGT-ATATAAATGATTTTAAAACTGAAATCTTTTTCATTTTTGATTAAAATAGATCATAA
1 TTTATAATCTTATAAATGATTTTAAATC-AAAATCTTTTTCATTTTTGGTTAAAATAGATCATAA
1066205 TTGGATGTTTACATTGGGAAATATGAAGCGAATGCCATCCATTGACAAGAAAAGTTTATTTATAG
65 TTGGATGTTTACATTGGGAAATATGAAGC-AATGCCATCCATTGACAAGAAAAGTTTATTTATAG
* * *
1066270 TCACTCATGCCATCAAAAACCTTATTACTTGCTTTAGATGG
129 TCACTCATGCCAT-GAAAGCCTTATTACTTGCTTTAAATGG
* *
1066311 TTTAATAATCCTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTT-CAA-AGTATCATA
1 TTT-ATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAG-ATCATA
* * * * * * *
1066374 A-TAGAGTGTTTTCATTGGAAAACATGAGGCAAAGTCCATCCGTTGACAAGAAAAG
64 ATTGGA-TGTTTACATTGGGAAATATGAAGCAATG-CCATCCATTGACAAGAAAAG
1066429 CCTTGTTATT
Statistics
Matches: 363, Mismatches: 77, Indels: 39
0.76 0.16 0.08
Matches are distributed among these distances:
169 8 0.02
170 68 0.19
171 261 0.72
172 26 0.07
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.37
Consensus pattern (168 bp):
TTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAGATCATAAT
TGGATGTTTACATTGGGAAATATGAAGCAATGCCATCCATTGACAAGAAAAGTTTATTTATAGTC
ACTCATGCCATGAAAGCCTTATTACTTGCTTTAAATGG
Found at i:1068800 original size:171 final size:169
Alignment explanation
Indices: 1068406--1068845 Score: 464
Period size: 170 Copynumber: 2.6 Consensus size: 169
1068396 TTTTTGTTCA
* * * *
1068406 AAAC-TATCACAATTGGATGTTTGCATTGTA-AAACATGAAGTAAAAGCTATCCATTGATAAG-A
1 AAACATATCATAATTGGATGTTTGCA-TGAAGAAACATGAAGT-AATGCAATCCATTGATAAGAA
* * * * * * *
1068468 AAGTCCATTTATAGTCACTCATTCTATCGGAAGCCTAGTTACTCGTTTTAAATGGTTTTATAATG
64 AAGTCCTTTTATAGTCACTCATCCTATCGAAAACCTAGTTACTCGCTTTAAAGGGTTTTATAATC
* * * * * *
1068533 TTATAAGTGATTTTAAATCGACATCTTTTTCATTTTTGCTT
129 TTATAAATAATTTAAAATCGAAAACTTTTTCAGTTTTGCTT
** *
1068574 AAACATATCATAATTGGATGTTTGCATGGGGAAACATGAAGCGAATGCAATCCATTGATAAGAAA
1 AAACATATCATAATTGGATGTTTGCATGAAGAAACATGAAG-TAATGCAATCCATTGATAAGAAA
* * *
1068639 AGTCCTTTTATAGTCACTCATACCT-TTGAAAACCTTGTTACTTGCTTTAAAGGGTTTTATAATC
65 AGTCCTTTTATAGTCACTCAT-CCTATCGAAAACCTAGTTACTCGCTTTAAAGGGTTTTATAATC
* * *
1068703 TTGTAAATAATTTAAAAT-GAAAAACTTTTTTAGTTTTGGTT
129 TTATAAATAATTTAAAATCG-AAAACTTTTTCAGTTTTGCTT
* *
1068744 AAA-ATCGATCATAATTGGATGTTTGCATCAAGAAACATGAAGTACATGCCATCCATTGATAAGA
1 AAACAT--ATCATAATTGGATGTTTGCATGAAGAAACATGAAGTA-ATGCAATCCATTGATAAGA
* *
1068808 AAAGT-CTATTTATAGTCACTTATGCC-ATCGAAAGCCTA
63 AAAGTCCT-TTTATAGTCACTCAT-CCTATCGAAAACCTA
1068846 ATGAATCACT
Statistics
Matches: 226, Mismatches: 35, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
168 6 0.03
169 50 0.22
170 89 0.39
171 81 0.36
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (169 bp):
AAACATATCATAATTGGATGTTTGCATGAAGAAACATGAAGTAATGCAATCCATTGATAAGAAAA
GTCCTTTTATAGTCACTCATCCTATCGAAAACCTAGTTACTCGCTTTAAAGGGTTTTATAATCTT
ATAAATAATTTAAAATCGAAAACTTTTTCAGTTTTGCTT
Found at i:1068870 original size:171 final size:169
Alignment explanation
Indices: 1068302--1068873 Score: 494
Period size: 171 Copynumber: 3.3 Consensus size: 169
1068292 GATGCCATCC
* * * * * * * * **
1068302 ATTTATAGTCACTTATGCCATCAAAAGCCTTGTTACTAGCTTTAAATGTTTTTCTAATCCTAGGA
1 ATTTATAGTCACTCATACCATCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAA
* * ** *
1068367 ATGATTTTAAATC-AAAATCTTTTTCTTTTTTTTTG-TTCAAA-ACTATCACAATTGGATGTTTG
66 ATAATTTAAAATCGAAAA-CTTTTTC---AGTTTTGCTT-AAACA-TATCATAATTGGATGTTTG
* * * *
1068429 CATTGTA-AAACATGAAGTAAAAGCTATCCATTGATAAG-AAAGTCC
125 CA-TGAAGAAACATGAAGT-AATGCAATCCATTGATAAGAAAAGTCT
* * * * *
1068474 ATTTATAGTCACTCATTCTATCGGAAGCCTAGTTACTCGTTTTAAATGGTTTTATAATGTTATAA
1 ATTTATAGTCACTCATACCATCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAA
* * * * * * **
1068539 GTGATTTTAAATCGACATCTTTTTCATTTTTGCTTAAACATATCATAATTGGATGTTTGCATGGG
66 ATAATTTAAAATCGAAAACTTTTTCAGTTTTGCTTAAACATATCATAATTGGATGTTTGCATGAA
*
1068604 GAAACATGAAGCGAATGCAATCCATTGATAAGAAAAGTCCT
131 GAAACATGAAG-TAATGCAATCCATTGATAAGAAAAGT-CT
* * * * * * *
1068645 -TTTATAGTCACTCATACCTTTGAAAACCTTGTTACTTGCTTTAAAGGGTTTTATAATCTTGTAA
1 ATTTATAGTCACTCATACCATCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAA
* *
1068709 ATAATTTAAAAT-GAAAAACTTTTTTAGTTTTGGTTAAA-ATCGATCATAATTGGATGTTTGCAT
66 ATAATTTAAAATCG-AAAACTTTTTCAGTTTTGCTTAAACAT--ATCATAATTGGATGTTTGCAT
* *
1068772 CAAGAAACATGAAGTACATGCCATCCATTGATAAGAAAAGTCT
128 GAAGAAACATGAAGTA-ATGCAATCCATTGATAAGAAAAGTCT
* * * * * * **
1068815 ATTTATAGTCACTTATGCCATCGAAAGCCTAATGAATCACTTTAAATTATTTTATAATC
1 ATTTATAGTCACTCATACCATCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC
1068874 NNNNNNNNNN
Statistics
Matches: 324, Mismatches: 64, Indels: 25
0.78 0.15 0.06
Matches are distributed among these distances:
168 2 0.01
169 59 0.18
170 91 0.28
171 100 0.31
172 70 0.22
173 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (169 bp):
ATTTATAGTCACTCATACCATCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAA
ATAATTTAAAATCGAAAACTTTTTCAGTTTTGCTTAAACATATCATAATTGGATGTTTGCATGAA
GAAACATGAAGTAATGCAATCCATTGATAAGAAAAGTCT
Found at i:1070430 original size:171 final size:170
Alignment explanation
Indices: 1069524--1070587 Score: 413
Period size: 171 Copynumber: 6.2 Consensus size: 170
1069514 GAAGTGGATA
** * * * * * **
1069524 CCATCCATTGACAAG-AAAGGTCTTTTTATTGTCAATCATGCTATCGAAAGCCTAATTACTTGCT
1 CCATCCATTGACAAGAAAAATTC-ATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACT
* * ** * ** * *
1069588 TTAAATGGTTTCGTAATCTTATAAATGATTTTGAAA-GGAAAT-TTTCT-ATGTTTAAGGTTAAA
65 TTAGATGATTTAATAATCATATAAATGA-TTTGAAATCAAAATATTTTTCAT-TTTTA-GTTAAA
* * * **
1069650 ATTGATCATAATTGGATATTTTCATTGTGAAACATGAAGC-GGAT
127 AAT-ATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
** *** * * * * *
1069694 CCCATTGATTGACAAGAAAAGCCCATTTATAGTCACTAATGCCTTTGAAAACCTTGTTACTCACT
1 -CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACT
* * * ** * *
1069759 TTAAATGGTTTTATAATGC-TATAAATGATTTGAAATTGAAATATTTGTCATTTTTAGTT-TAAA
65 TTAGATGATTTAATAAT-CATATAAATGATTTGAAATCAAAATATTTTTCATTTTTAGTTAAAAA
* * * ***
1069822 TCAATCATAATTGGATGTTTGCCTTGGGAAACATGAAG-TGCAT
129 T--ATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
* * * * * ** * *
1069865 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATACCATCAAAAACCCAATGACTCA-A
1 -CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACT
* * * ********** *
1069929 TTAAATTAGGTTT-ATAATCTTATNNNNNNNNNNAAATCAAAATCTTTTTCATTTTT-GCTTAAA
65 TTAGA-T-GATTTAATAATCATATAAATGATTTGAAATCAAAATATTTTTCATTTTTAG-TTAAA
* * ** * * * * ** *
1069992 AGAGATCATATTTGGATGCTTGCACTAGGTAATGTAAAGC-AAAT
127 A-ATATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
* * * * * * * * * *
1070036 ACCATCAATTGATATGAAAAGTCCACTTACAGTCACTCAAGCCTAT-GAAAGCCTTATTATTCGC
1 -CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCATGCC-ATCGAAAGCCTTATTACTCAC
** * * ********** * * *
1070100 TTTA-AACAGTTTTATAATCTTATANNNNNNNNNNAATCAAACA-CTTTTGCATTTTTGGTT-AA
64 TTTAGATGA-TTTAATAATCATATAAATGATTTGAAATCAAA-ATATTTTTCATTTTTAGTTAAA
* * * * * *
1070162 AATCAATCATAATTGGATGTTTACTTTGAGCAACTTGAAGCAAAAG
127 AAT--ATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
* * * ********* *
1070208 CTATCCATTGACAAGAAAAGTTCATTTACAGTCANNNNNNNNNNT-GAAAGCCTTATTACTCCCT
1 CCATCCATTGACAAGAAAAATTCATTTATAGTCA-CTCATGCCATCGAAAGCCTTATTACTCACT
* * * * * ** * *
1070272 TTATATGATTTTATAGT-ATATAAATTATTTTATAATTGAAATCTTTTTTATTTTTTA-TTAAAA
65 TTAGATGATTTAATAATCATATAAATGATTTGA-AATCAAAATATTTTTCA-TTTTTAGTTAAAA
** * *
1070335 TATATCATAATTGGATATTTAGTTTGTGAAACATGAAGC-GAAT
128 -ATATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
* * *
1070378 GCCATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTTACT
1 -CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACT
* * * *
1070443 TTAGATGGTTTAATAATCCTATAAATGATTTGAAATCAAAATATTTTTCATTTTTAGTTCAAACT
65 TTAGATGATTTAATAATCATATAAATGATTTGAAATCAAAATATTTTTCATTTTTAGTTAAAAAT
* * *
1070508 ATCATAATTGGGTGTTTCCATTGGGAAACATGAAGCAAAAT
130 ATCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
*
1070549 CCATCCATTGACAAGAAAAATTTATTTATAGTCACTCAT
1 CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCAT
1070588 TCCNNNNNNN
Statistics
Matches: 674, Mismatches: 184, Indels: 71
0.73 0.20 0.08
Matches are distributed among these distances:
169 1 0.00
170 105 0.16
171 510 0.76
172 53 0.08
173 5 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.36
Consensus pattern (170 bp):
CCATCCATTGACAAGAAAAATTCATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACTT
TAGATGATTTAATAATCATATAAATGATTTGAAATCAAAATATTTTTCATTTTTAGTTAAAAATA
TCATAATTGGATATTTACATTGGGAAACATGAAGCAAAAT
Found at i:1071663 original size:171 final size:169
Alignment explanation
Indices: 1071413--1071815 Score: 412
Period size: 170 Copynumber: 2.4 Consensus size: 169
1071403 TCTGAAAAGG
* *
1071413 TGAAGTGGATGCCATCCATTGGCAA-AAAAAA-TCCATTTATAGTCACTTATG-CTATCGAAAGC
1 TGAAGTCGATGCCATCCATT---AAGAAAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGC
*
1071475 ATTGTTACTCATTTTAAATAGTTTTATAATAC-TATAAATGATTTTAAATCA-AAATCTATT-TC
62 ATTATTACTCATTTTAAATAGTTTTATAAT-CTTATAAAT-ATTTTAAAT-AGAAATCT-TTCTC
* * ** * *
1071537 ATTTTTGGTTCAAACCTACCATAATTAGATGTTTACGAT-GGGAAACA
123 ATCTTTGGTTAAAACAAACCATAATTACATGTTTAC-ATAGAGAAACA
* *
1071584 TGAAGTCGATGACATCCATTAAGAAAAGAAGTCCATTTATAGTCACTCATGCCTTCAAAAGTC-T
1 TGAAGTCGATGCCATCCATTAAGAAAA-AAGTCCATTTATAGTCACTCATGCCTTCGAAAG-CAT
* * * *
1071648 TATTGCTCGTTTTAAATGGTTTTATAATCTTATAAATATTTTCAATAGAAATCTTTCTCATCTTT
64 TATTACTCATTTTAAATAGTTTTATAATCTTATAAATATTTTAAATAGAAATCTTTCTCATCTTT
* * * *
1071713 GGTTAAAACAAATCATATTTCCATGTTTGCATAGAGAAACA
129 GGTTAAAACAAACCATAATTACATGTTTACATAGAGAAACA
* * *
1071754 TGAAG-CTGATGCCATCTATTAACGAGAAAAGACCATTTATAGTC-CTTCATGCCTTCGAAAGC
1 TGAAGTC-GATGCCATCCATTAA-GAAAAAAGTCCATTTATAGTCAC-TCATGCCTTCGAAAGC
1071816 CTTGCTACTC
Statistics
Matches: 196, Mismatches: 24, Indels: 26
0.80 0.10 0.11
Matches are distributed among these distances:
168 2 0.01
169 12 0.06
170 100 0.51
171 79 0.40
172 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (169 bp):
TGAAGTCGATGCCATCCATTAAGAAAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATTA
TTACTCATTTTAAATAGTTTTATAATCTTATAAATATTTTAAATAGAAATCTTTCTCATCTTTGG
TTAAAACAAACCATAATTACATGTTTACATAGAGAAACA
Found at i:1072992 original size:341 final size:341
Alignment explanation
Indices: 1072384--1073013 Score: 781
Period size: 341 Copynumber: 1.8 Consensus size: 341
1072374 TCTTGATGTT
* * * * * *
1072384 AACATCCAATTATGATCAATTTTAACTATACATGAAAAACATTTTGATATGAAATCATTTACAAG
1 AACATCCAATTATGAT-AATTTTAACTAAAAATGAAAAACATTTCGATATAAAATCACTTACAAC
** * * * *
1072449 ATTATAAAATAATTTAAAGTGAGTCATTAGGCTTTCGATGGCATAAGTAACTATAAATAGACTTT
65 ATTATAAAATAATTTAAAACGAGTAACTAGGCTTTCAATGGAATAAGTAACTATAAATAGACTTT
* * *
1072514 TCTTATCAATTGATGGCATGTACTTCATGTTTCTTGATGTAAACATCCAATTATGATTGATTTTA
130 TCTTATCAATGGATGGCATGTACTTCATGTTTCTTGATGTAAACATCCAATTATGATAGATTTGA
* * * * *
1072579 ACAAAAAATAAAAAAGTTTTTTGATTTTAAATTATTTACAAGATTATAAAACCATTTAAAGCGAG
195 ACAAAAAAAAAAAAAGTATTTTGATTTAAAATCATTTACAAGATTATAAAACCATTTAAAACGAG
* *
1072644 TAACAAGGTTTTCAAAGGCATGAGTGACTATAAAAGAATTTTTCTTATTAATGGATTGCATTCAC
260 CAACAAGGCTTT-AAAGGCATGAGTGACTATAAAAGAATTTTTCTTATTAATGGATTGCATTCAC
1072709 TTCATGTTTCCCAACGCA
324 TTCATGTTTCCCAACGCA
* *
1072727 AACATCCAATTATGAT-ATGTTTAAGC-AAAAATGAAAAAGATTTCGATTTAAAATCACTTACAA
1 AACATCCAATTATGATAAT-TTTAA-CTAAAAATGAAAAACATTTCGATATAAAATCACTTACAA
* * * *
1072790 CATTATAAAATTATTTAAAACGAGTAACTAGGCTTTCAATGGAATGAGTGACTATAAATGGAC-T
64 CATTATAAAATAATTTAAAACGAGTAACTAGGCTTTCAATGGAATAAGTAACTATAAATAGACTT
* * * * *
1072854 TTCTTCTCAATGGATGG-ATTTTACTTCATG-TT-TTGCAATGTAAACATCCAATTGTGGTAGGT
129 TTCTTATCAATGGATGGCA-TGTACTTCATGTTTCTTG--ATGTAAACATCCAATTATGATAGAT
* * *
1072916 TTGAACAAAAAAAAGAAAAAG-ATTTTGATTTAAAATCA-TTCCTAGGATTATAAAAGCATTTAA
191 TTGAACAAAAAAAA-AAAAAGTATTTTGATTTAAAATCATTTAC-AAGATTATAAAACCATTTAA
* *
1072979 AACGAGCAACAAGGCTTTGATGGCATGAGTGACTA
254 AACGAGCAACAAGGCTTTAAAGGCATGAGTGACTA
1073014 CAAATGGATG
Statistics
Matches: 242, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
339 3 0.01
340 21 0.09
341 108 0.45
342 93 0.38
343 17 0.07
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (341 bp):
AACATCCAATTATGATAATTTTAACTAAAAATGAAAAACATTTCGATATAAAATCACTTACAACA
TTATAAAATAATTTAAAACGAGTAACTAGGCTTTCAATGGAATAAGTAACTATAAATAGACTTTT
CTTATCAATGGATGGCATGTACTTCATGTTTCTTGATGTAAACATCCAATTATGATAGATTTGAA
CAAAAAAAAAAAAAGTATTTTGATTTAAAATCATTTACAAGATTATAAAACCATTTAAAACGAGC
AACAAGGCTTTAAAGGCATGAGTGACTATAAAAGAATTTTTCTTATTAATGGATTGCATTCACTT
CATGTTTCCCAACGCA
Found at i:1073531 original size:170 final size:169
Alignment explanation
Indices: 1073047--1073660 Score: 537
Period size: 170 Copynumber: 3.6 Consensus size: 169
1073037 ATTTACTGAA
* * * * **
1073047 GAAAACATCCAATTATGAT-CGAATTTAACTAAAAAT-AAAAATGGTTTTGATTTAAAATTGTTT
1 GAAAACATCCAATTATGATATGATTTTAA-TAAAAATGAAGAA-GATTTTGATTT-AAATCATTT
* * * * * *
1073110 ATAAAATTATACAACCATTTAAAGCGTGTAATAAGGATTTCGAAGGCATGAGTGACTATAAATGG
63 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGG
* * *
1073175 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCAAGTTTTCCAAT
128 ACTTTTCTTGTCAATGGAT-GCTTTTACTTCATGTTTCCCAAT
* * * *
1073218 AAAAACATCCAATTATGATCT-ATTTTAACAAAAAAT-AATGAAGATTTTGATTTGATATCATTT
1 GAAAACATCCAATTATGATATGATTTTAA-TAAAAATGAA-GAAGATTTTGATTT-AAATCATTT
* *** * * * * *
1073281 ATAAGATTATAAAACTATTTTGCGCGAGTCACTATGC-TTTCAATGGCATG-GTGAC-ACTAAAA
63 ATAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAA-GGCATGAGTGACTA-TAAAT
* * ** *
1073343 GGACTTTTCATATCAATGGATGCCTTCCATTTCATGTTTCCCAAT
126 GGACTTTTCTTGTCAATGGATG-CTTTTACTTCATGTTTCCCAAT
* ** *
1073388 GTAAACATCCAATTATGAT-TGATTTTGTTGAAAAATGAAGAAGATTTTGATTTCTAATCATTTA
1 GAAAACATCCAATTATGATATGATTTTAAT-AAAAATGAAGAAGATTTTGATTT-AAATCATTTA
* * * * *
1073452 TAAGATTATACAACCACTTAAAGCGAGTAACAAGGCTTTTGAAAGCATGAGTGGCTATATATGGA
64 TAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGA
***
1073517 C-TTTCTTGTCAATGGATAGCTTTTACTTCATGTTTCTTGAT
129 CTTTTCTTGTCAATGGAT-GCTTTTACTTCATGTTTCCCAAT
* * * * * *
1073558 GCAAACATCTAATTATAATATG-TTTTAACTAAAAATGAAAAAGATTTTGCTGTAAAATCATTTA
1 GAAAACATCCAATTATGATATGATTTTAA-TAAAAATGAAGAAGATTTTGAT-TTAAATCATTTA
* * *
1073622 TAAGATTACAAAACCATTTAAATCGAGTAATAAGGCTTT
64 TAAGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTT
1073661 CGANNNNNNN
Statistics
Matches: 351, Mismatches: 77, Indels: 31
0.76 0.17 0.07
Matches are distributed among these distances:
169 3 0.01
170 242 0.69
171 103 0.29
172 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (169 bp):
GAAAACATCCAATTATGATATGATTTTAATAAAAATGAAGAAGATTTTGATTTAAATCATTTATA
AGATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACT
TTTCTTGTCAATGGATGCTTTTACTTCATGTTTCCCAAT
Found at i:1074428 original size:322 final size:321
Alignment explanation
Indices: 1073837--1074484 Score: 682
Period size: 322 Copynumber: 2.0 Consensus size: 321
1073827 TTTAGCCTTA
* * * *
1073837 TAAATGATTTTATATTAAAAGATTTTTCATTTTTGGTTAAAATTCATCATAATTGGATGTTTACT
1 TAAATGATTTGAAATTAAAAGATTTGTCATTTTTAGTTAAAATTCATCATAATTGGATGTTTACT
* ** * * * *
1073902 TCAAGAGATGTGAAGCGGATACCATCTATTGACAAGAAAAGTCCTTTTATTGTCAATCATACTAT
66 TCAAGAAACATGAAGCGCATACCATCTATTGACAAGAAAAGTCCATTTATAGTCAATCATACCAT
* ** * * *
1073967 CGAAAGTCTAATTACTTACTTTAAATAGTTTCATAATCTTATAAATGATTTTAAAAGGAAAATTT
131 CAAAAACCTAATGACTGAC-TTAAATAGTTTCATAATCTTATAAATGATTTTAAAAGCAAAATTT
* ** * *
1074032 CTCCGTTTATGGTTAAAATTGATCATAATTGGATATTTGCATTCGGAAACACGAAGCAGATCTCA
195 CTCCATTTATGGTTAAAAGAGATCATAATTGGATATTTGCATTAGGAAACACGAAGCAAATCTCA
** * *
1074097 TTGATTGACAAGAAAAGCCCATTTACAGTCA-TTAATGCCT-TCGAAAACCTTATTACTCACTT
260 TCAATTGACAAGAAAAGCCCACTTACAGTCACTCAA-GCCTAT-GAAAACCTTATTACTCACTT
* * * *
1074159 TAAATGATTTGAAATTGAAATATTTGTCATTTTTAGTTGAAA-TCAATCATAATTGGATGTTTGC
1 TAAATGATTTGAAATTAAAAGATTTGTCATTTTTAGTTAAAATTC-ATCATAATTGGATGTTT-A
* * * * *
1074223 CTT-AGGAAACATGAAGTGCATGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
64 CTTCAAGAAACATGAAGCGCATACCATCTATTGACAAGAAAAGTCCATTTATAGTCAATCATACC
* *
1074287 ATCAAAAACCTAATGACCTGA-TTAAATTAGGTTT-ATAATCTTATAAATGA-TTTCAAATCAAA
129 ATCAAAAACCTAATGA-CTGACTTAAA-TA-GTTTCATAATCTTATAAATGATTTTAAAAGCAAA
* * * * * * * * ***
1074349 ATCTTTTTCATTTTTGGTTAAAGGAGATCATATTTGGATGTTTGCTTTAGGTAATGTGAAGCAAA
191 AT-TTCTCCATTTATGGTTAAAAGAGATCATAATTGGATATTTGCATTAGGAAACACGAAGCAAA
* * * *
1074414 TAC-CATCAATTGACATGAAAAGGCCACTTACAGTCACTCAAGCCTATGAAAGCCTTATTATTCA
255 T-CTCATCAATTGACAAGAAAAGCCCACTTACAGTCACTCAAGCCTATGAAAACCTTATTACTCA
1074478 CTT
319 CTT
1074481 TAAA
1 TAAA
1074485 CAGTTTTATA
Statistics
Matches: 265, Mismatches: 52, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
321 18 0.07
322 232 0.88
323 15 0.06
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (321 bp):
TAAATGATTTGAAATTAAAAGATTTGTCATTTTTAGTTAAAATTCATCATAATTGGATGTTTACT
TCAAGAAACATGAAGCGCATACCATCTATTGACAAGAAAAGTCCATTTATAGTCAATCATACCAT
CAAAAACCTAATGACTGACTTAAATAGTTTCATAATCTTATAAATGATTTTAAAAGCAAAATTTC
TCCATTTATGGTTAAAAGAGATCATAATTGGATATTTGCATTAGGAAACACGAAGCAAATCTCAT
CAATTGACAAGAAAAGCCCACTTACAGTCACTCAAGCCTATGAAAACCTTATTACTCACTT
Found at i:1074495 original size:171 final size:168
Alignment explanation
Indices: 1074159--1075413 Score: 873
Period size: 171 Copynumber: 7.4 Consensus size: 168
1074149 TTACTCACTT
* ** * * * *
1074159 TAAATGATTTGAAATTGAAATATTTGTCATTTTTAGTTGAAATCA-ATCATAATTGGATGTTTGC
1 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTT-AAAT-AGATCATAATTGGATGTTTAC
* *** * * * *
1074223 CTTAGGAAACATGAAGTGCATGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCA
64 TTTAGGAAACATGAAGCAAATACCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCCA
* * * * *
1074288 TCAAAAACC---TAATGACCTGATTAAATTAGGTTTATAATCTTA
129 T-GAAAGCCTTGTTATTA-CT--TTAAA-TAGTTTTATAATCTTA
* * * *
1074330 TAAATGATTTCAAATCAAAATCTTTTTCATTTTTGGTTAAAGGAGATCATATTTGGATGTTTGCT
1 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAA-TAGATCATAATTGGATGTTTACT
* ** * * ** * *
1074395 TTAGGTAATGTGAAGCAAATACCATCAATTGACATGAAAAGGCCACTTACAGTCACTCAAGCCTA
65 TTAGGAAACATGAAGCAAATACCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCC-A
* *
1074460 TGAAAGCCTTATTATTCACTTTAAACAGTTTTATAATCTTA
129 TGAAAGCCTTGTTATT-ACTTTAAATAGTTTTATAATCTTA
* *
1074501 TAATTGATTTTAAATCAAACA-CTTTTGCATTTTTGGTTCAAATTA-ATCATAATTGGATGTTTA
1 TAAATGATTTTAAATCAAA-ATCTTTTTCATTTTTGGTT-AAA-TAGATCATAATTGGATGTTTA
* * * *
1074564 CTTTCA-GAAACTTGAAGCAAA-AGCCATCCTTTGATAAGAAAAGTTCATTTACAGTCACTCATT
63 CTTT-AGGAAACATGAAGCAAATA-CCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATG
* ** * *
1074627 CCATTGAAAGCCTTATTACTCCCTTTACAT-GATTTTATAAT-ATA
126 CCA-TGAAAGCCTTGTTA-TTACTTTAAATAG-TTTTATAATCTTA
* * ** * *
1074671 TAAATTACTTTATAATTGAAATCTTTTTTATTTTTGATTAAAATAGATCATAATTGGATGTTTAC
1 TAAATGATTTTA-AATCAAAATCTTTTTCATTTTTGGTT-AAATAGATCATAATTGGATGTTTAC
* * * * *
1074736 TTT-GTGAAACATGAAGCGAATGCCATCTATTGACAAGAAAAGTTCATTTATAGTCACTCATACC
64 TTTAG-GAAACATGAAGCAAATACCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCC
* * * *
1074800 ATCGAAAGCCTTGTCACTTACTTTAGATGGTTTAATAATCTTA
128 AT-GAAAGCCTTGTTA-TTACTTTAAATAGTTTTATAATCTTA
* *
1074843 TAAATGATTTTAAATC-AAATCTTTTTCATTTTTGGTTCAAACT--ATCATAATTGGGTGTTTTC
1 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTT-AAA-TAGATCATAATTGGATGTTTAC
* * * * *
1074905 ATTGGGAAACATGAAGCAAA-ATCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATTCC
64 TTTAGGAAACATGAAGCAAATA-CCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCC
* * * * * *
1074969 ATTGAAAGCTTTGTTACTTGCTTTATATGGTTTTATAGT-ATA
128 A-TGAAAGCCTTGTTA-TTACTTTAAATAGTTTTATAATCTTA
** * * *
1075011 TAAATGATTTTAAATTGAAATCTTTGTT--GTTTTGGATTTTAAACAGATGATAATTGGATGTTT
1 TAAATGATTTTAAATCAAAATCTTT-TTCATTTTTGG---TTAAATAGATCATAATTGGATGTTT
* * * * * * *
1075074 ACATTGGGAAACATGATGCGAATGCCATCTATT-ACCAAGAAAAGTTCACTTACAGTCACTCATG
62 ACTTTAGGAAACATGAAGCAAATACCATCCATTGA-CAAGAAAAGTTCATTTACAGTCACTCATG
* ** *
1075138 CCTTTGAAAGCCTTGGTGCTTACTTTAAATAGTTTTATAATCTTT
126 CC-ATGAAAGCCTT-GTTATTACTTTAAATAGTTTTATAATCTTA
* * ** * *
1075183 TAAATGATTTTAAATTAAAATCTTTTTCATTTTTAGTTAAAATCCATCATGATTGGATGTTTGC-
1 TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTT-AAATAGATCATAATTGGATGTTTACT
* * * ** * * * * * * **
1075247 ATCGATAAACATGAAGCGGATAGCATCTATTGACAA-AAAAGTCCATTTATAGTCATTAATGTAA
65 TTAG-GAAACATGAAGCAAATACCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCCA
* * * * * * * *
1075311 TCGAAAACCTAGTAACTTGCTTGAGA-GGATTTTATAATCGTA
129 T-GAAAGCCTTGTTA-TTACTTTAAATAG-TTTTATAATCTTA
* * * * *
1075353 TAAATGATTTTATATTAAAAT-TGTTTTCATTTTTAGTTAAAATAGATTATATTTGGATGTT
1 TAAATGATTTTAAATCAAAATCT-TTTTCATTTTTGGTT-AAATAGATCATAATTGGATGTT
1075414 AGCATTAGGA
Statistics
Matches: 875, Mismatches: 161, Indels: 97
0.77 0.14 0.09
Matches are distributed among these distances:
168 23 0.03
169 116 0.13
170 154 0.18
171 516 0.59
172 55 0.06
173 5 0.01
174 5 0.01
175 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (168 bp):
TAAATGATTTTAAATCAAAATCTTTTTCATTTTTGGTTAAATAGATCATAATTGGATGTTTACTT
TAGGAAACATGAAGCAAATACCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATGCCATG
AAAGCCTTGTTATTACTTTAAATAGTTTTATAATCTTA
Found at i:1075066 original size:340 final size:340
Alignment explanation
Indices: 1074159--1075301 Score: 1056
Period size: 342 Copynumber: 3.3 Consensus size: 340
1074149 TTACTCACTT
* * * * * * * * *
1074159 TAAATGATTTGAAATTGAAATATTTGTCATTTTTAGTTGAAATCAATCATAATTGGATGTTTGCC
1 TAAATGATTTTAAA-TCAAATCTTTTTCATTTTTGGTTCAAA-CTATCATAATTGGATGTTTACA
*** * * * * *
1074224 TT-AGGAAACATGAAGTGCATGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCA
64 TTGA-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATTCCA
** * * * *** * * * * **
1074288 TCAAAAACCTAATGAC-CTGATTAAATTAGGTTTATAATCTTATAAATGA-TTTCA-AATCAAAA
128 TTGAAAGCCTTATTACTCCCTTTACATGA-TTTTATAAT-ATATAAATGACTTT-ATAATTGAAA
** * * * * * ** *
1074350 TCTTT-TTCATTTTTGG-TTAAAGGAGATCATATTTGGATGTTTGCTTTAGGTAATGTGAAGCAA
190 TCTTTGTT-A-TTTTGGATTAAAACAGATCATAATTGGATGTTTACATTGGGAAACATGAAGCGA
* * * ** **
1074413 ATACCATCAATTGA-CATGAAAAGGCCACTTACAGTCACTCA-AGCCTAT-GAAAGCCTTATTA-
253 ATGCCATCTATT-ACCAAGAAAAGTTCACTTACAGTCACTCATA-CC-ATCGAAAGCCTTGGTAC
*
1074474 TTCACTTTAAACAGTTTTATAATCTTA
315 TT-ACTTTAAATAGTTTTATAATCTTA
* * * * *
1074501 TAATTGATTTTAAATCAAACACTTTTGCATTTTTGGTTCAAATTAATCATAATTGGATGTTTACT
1 TAAATGATTTTAAATCAAA-TCTTTTTCATTTTTGGTTCAAACT-ATCATAATTGGATGTTTACA
* * * *
1074566 TTCAGAAACTTGAAGCAAAAGCCATCCTTTGATAAGAAAAGTTCATTTACAGTCACTCATTCCAT
64 TTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATTCCAT
*
1074631 TGAAAGCCTTATTACTCCCTTTACATGATTTTATAATATATAAATTACTTTATAATTGAAATCTT
129 TGAAAGCCTTATTACTCCCTTTACATGATTTTATAATATATAAATGACTTTATAATTGAAATCTT
* * * * *
1074696 TTTTATTTTTGATTAAAATAGATCATAATTGGATGTTTACTTTGTGAAACATGAAGCGAATGCCA
194 TGTTATTTTGGATTAAAACAGATCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATGCCA
* *
1074761 TCTATTGA-CAAGAAAAGTTCATTTATAGTCACTCATACCATCGAAAGCCTT-GTCACTTACTTT
259 TCTATT-ACCAAGAAAAGTTCACTTACAGTCACTCATACCATCGAAAGCCTTGGT-ACTTACTTT
* * *
1074824 AGATGGTTTAATAATCTTA
322 AAATAGTTTTATAATCTTA
* *
1074843 TAAATGATTTTAAATCAAATCTTTTTCATTTTTGGTTCAAACTATCATAATTGGGTGTTTTCATT
1 TAAATGATTTTAAATCAAATCTTTTTCATTTTTGGTTCAAACTATCATAATTGGATGTTTACATT
* * * *
1074908 GGGAAACATGAAGCAAAATCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATTCCATTG
66 GAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATTCCATTG
* * ** * * * *
1074973 AAAGCTTTGTTACTTGCTTTATATGGTTTTATAGTATATAAATGATTTTA-AATTGAAATCTTTG
131 AAAGCCTTATTACTCCCTTTACATGATTTTATAATATATAAATGACTTTATAATTGAAATCTTTG
* * * *
1075037 TTGTTTTGGATTTTAAACAGATGATAATTGGATGTTTACATTGGGAAACATGATGCGAATGCCAT
196 TTATTTTGGA-TTAAAACAGATCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATGCCAT
* * * *
1075102 CTATTACCAAGAAAAGTTCACTTACAGTCACTCATGCCTTTGAAAGCCTTGGTGCTTACTTTAAA
260 CTATTACCAAGAAAAGTTCACTTACAGTCACTCATACCATCGAAAGCCTTGGTACTTACTTTAAA
*
1075167 TAGTTTTATAATCTTT
325 TAGTTTTATAATCTTA
* * * * * *
1075183 TAAATGATTTTAAATTAAAATCTTTTTCATTTTTAGTTAAAATCCATCATGATTGGATGTTTGCA
1 TAAATGATTTTAAA-TCAAATCTTTTTCATTTTTGGTTCAAA-CTATCATAATTGGATGTTTACA
* * * * * * *
1075248 TCGATAAACATGAAGCGGATAG-CATCTATTGACAA-AAAAGTCCATTTATAGTCA
64 TTGAGAAACATGAAGC-AAAAGCCATCCATTGACAAGAAAAGTTCATTTACAGTCA
1075302 TTAATGTAAT
Statistics
Matches: 662, Mismatches: 121, Indels: 37
0.81 0.15 0.05
Matches are distributed among these distances:
339 22 0.03
340 245 0.37
341 85 0.13
342 295 0.45
343 15 0.02
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (340 bp):
TAAATGATTTTAAATCAAATCTTTTTCATTTTTGGTTCAAACTATCATAATTGGATGTTTACATT
GAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTTCATTTACAGTCACTCATTCCATTG
AAAGCCTTATTACTCCCTTTACATGATTTTATAATATATAAATGACTTTATAATTGAAATCTTTG
TTATTTTGGATTAAAACAGATCATAATTGGATGTTTACATTGGGAAACATGAAGCGAATGCCATC
TATTACCAAGAAAAGTTCACTTACAGTCACTCATACCATCGAAAGCCTTGGTACTTACTTTAAAT
AGTTTTATAATCTTA
Found at i:1077163 original size:171 final size:170
Alignment explanation
Indices: 1075463--1079511 Score: 2361
Period size: 171 Copynumber: 23.8 Consensus size: 170
1075453 GATAAGTCCA
* ** * * * *
1075463 TTTATAATCTTATAAATGATTTTAATTTGAAATCTTTTTCATTTTTTGTTAAAATTACTCATAAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATCAATCATAAT
* ** ** * * ** *
1075528 TGGATGTTTGCATAT-GAAAAGGTGAAGTGGATGTCATCTATTGGCAAGAAAAATCCATTTATAG
65 TGGATGTTTGCAT-TGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * * * * * * *
1075592 TCACTTATGCTATTGAAAACATTGTTACTCATTTTAAATAGT
129 TCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * * * *
1075634 TTTATAATAC-TATAAATGATTTTAAATCAAATTC-TATTTCATTTTTGGTTCAAACCTACCGTA
1 TTTATAAT-CTTATAAATGATTTTAAATCAAAATCAT-TTTCATTTTTTGTT-AAATCAATCATA
* * * * * * * * * *
1075697 ATTAGATGTTTACGTTGGGAAACATGAATTC-GATGGCATGCATTAAGAAAAAAAGTTCATTTAT
63 ATTGGATGTTTGCATTGGGAAACATGAA-GCAGATGCCATCCATTGATAAGAAAAGTCCATTTAT
* * * * ** *
1075761 TGTCACTCATGCCTTCAAAAGTCTTATTACTCTTTTTAAATGAT
127 AGTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * ** * * * * *
1075805 TTTATAGTCCTATAAAT-ATTTTCAATGGAAATC-TTTCTCATCTTTGGTCAAAACAAATCATAT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTT-TCATTTTTTGTTAAATC-AATCATAA
** * * * * **
1075868 TTCAATGTTTGCATAGAGAAACATGAAGCTGATGCCATCCATTAACGAGAAAAG-CCTATTTATA
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCC-ATTTATA
* * * * * ** ** ** *
1075932 GTTACTCATACCTTCAAAAGTCTTGCTACTTGCCATCAATGGT
128 GTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * * * * *
1075975 TTTATAATCTTGTAAACGATTTTAAATCAAAAT-ATTTTTTATTTTTAGTTAAAATTAATTAGAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCA-TTTTCATTTTTTGTT-AAATCAATCATAA
* * * * ** * * * *
1076039 TTGGTTGTTTGCATTAGGAAGCATAAAAAAGATGCCCTCCATTGATAATAAAAATCTATTTATAG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* *
1076104 TCACTTATGCCATCAAAAGCC-TAGTTACTCACTTTAAATGGT
129 TCACTCATGCCATCGAAAGCCTTA-TTACTCACTTTAAATGGT
* * * *
1076146 TTTATAATCTTGTAAATGATTTTAAATCAAAAT-ATTTT--TTTTTGGTTCAAAGCTATCATAAT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATCAATCATAAT
** * * ** * * *
1076208 TTAATGTTTGCATCGAGCAATGA-GAAGCGGATGCCATCCATTGATAAGAAAAGTCCACTTATAA
65 TGGATGTTTGCATTG-GGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * *
1076272 TCACTAATGCCATCGAAAGCC-TAGTTACTCAGTTTAAATTGT
129 TCACTCATGCCATCGAAAGCCTTA-TTACTCACTTTAAATGGT
* * * * * * *
1076314 TTTATTATCTTATAAATAATTCTAAACCAAAATCAGTTTTC-TTTTACT-TCAAACCAAT-AGTA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCA-TTTTCATTTT-TTGTTAAATCAATCA-TA
* * * * * * * *
1076376 ATTTGATGTTTGCATTAGAAAACATCAAACAAATGGCATCCATTGATAAGAAAAGTCCAGTTATA
63 ATTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATA
* * * * **
1076441 GTCACTTATGCCTTCAAAAGCCTT-GTACTCGTTTTAAATGGT
128 GTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * ** * *
1076483 TTTATAATCTTA-ATAATGATTATAAGTCAAAAT-ATTTTTGTTTTTTGTTAAAACATATCATAT
1 TTTATAATCTTATA-AATGATTTTAAATCAAAATCATTTTCATTTTTTGTTAAATCA-ATCATAA
*** * *
1076546 TTGGATGTTTGCATCAAGAAACATGAAGCAGATGTCATCCATTGATAAGAAAAGTCTATTTATAG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * * * *
1076611 TCAGTCAT-CTATC-AAAACTCTTGTTACTCACTTTAAATAGT
129 TCACTCATGCCATCGAAAGC-CTTATTACTCACTTTAAATGGT
* * * ** * ** * *
1076652 TTTATAGT-TCATAAATGATATTAAATTGAAATCTTTTTGGTTCTTGGTTCAAA-CATATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATCA-ATCATAA
* * * * * * * *
1076715 TTGGATGTTTGCATTAGCAAATATGAAGC-GAAAGGCATCTATTGACAAGAAAAGTTCATTTATA
64 TTGGATGTTTGCATTGGGAAACATGAAGCAG-ATGCCATCCATTGATAAGAAAAGTCCATTTATA
* * * * * * * * *
1076779 GTCGCTCATGACATCAAAACCCTTGTCACTGACTTTATATAGT
128 GTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * *** * * * *
1076822 TTTGTAATAC--ATTAATGATTCTAAATTGTAATCTTTTTCATTTTTAGCTAAAAT-AGATCAAA
1 TTTATAAT-CTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTG-TTAAATCA-ATCATA
* * * * * * *
1076884 ATTGGATATTTGCATTTGGAAAATATGAAACAAAAGCCATCCATTGATAAAAAAAAGTCCATTTA
63 ATTGGATGTTTGCA-TTGGGAAACATGAAGCAGATGCCATCCATTGAT-AAGAAAAGTCCATTTA
* * * * *
1076949 CAAG-CACTCATGCCTTCAAAAGCCTTATCACTCAC-TTAAATAGT
126 -TAGTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
*
1076993 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTCTCATTTTTTGTTAAAGTCAATCATAAT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTTAAA-TCAATCATAAT
* * * * * *
1077058 TGTATGTTTACTTTGGGAAACATGAAGCAAGA-GCCATCGATTGATAAGAAAATTCTATTTATAG
65 TGGATGTTTGCATTGGGAAACATGAAGC-AGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* *
1077122 TCACTCATGCCATCGAAAGCCTTATTGCTCACTTTAAATAGT
129 TCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * ** * *
1077164 TTTATAATCCTATAAATGATTTTAAATCAAAATC-TCTTCTATTTTTGGGACAAAGCTATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTC-ATTTTT-TGTTAAATCAATCATAA
* * * * * * *
1077228 TTGGATGTTTCCATTGGGAAACATGAAGTAGAAGTCATCCATTGACAAGAAAAGTCTATTTATGG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* *
1077293 TCACT-AGTACCATCG-AAGACC-TAGTTA-TCTACTTTAAAAGGT
129 TCACTCA-TGCCATCGAAAG-CCTTA-TTACTC-ACTTTAAATGGT
** * ** * * *
1077335 TTTA-AATCTTATCGATGATTTTAAATC-AATTTTTTTTCATTTATGGTTCAAA-CTTATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATC-AATCATAA
* * * *** * **
1077397 TTGGACGTTTACAATGGGAAGTGTAAAGTGGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * * * * * **
1077462 TCACCCATGGCTTCGAAAGCATTGTTGCTTGCTTTAAATTGG-
129 TCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAA-TGGT
* * * * ** ** *
1077504 TTTATAATCCTATAAATGATTTGAAGTTGAAATATC-TTTT-GGTTTTACTTAAAACAGATCATA
1 TTTATAATCTTATAAATGATTTTAA-ATCAAA-ATCATTTTCATTTTTTGTTAAATCA-ATCATA
* * * ** * * * * *
1077567 TTTAGATGTTGGCATTAAGAAA-ATTGAAGCAAAT-CCTATCCATTAAGAAAAAAAGTCAATTTA
63 ATTGGATGTTTGCATTGGGAAACA-TGAAGCAGATGCC-ATCCATTGATAAGAAAAGTCCATTTA
* * * * *
1077630 AAG-CTACTTATGACATCGACA-CTCTTATTACTCATTTTAAATGGT
126 TAGTC-ACTCATGCCATCGAAAGC-CTTATTACTCACTTTAAATGGT
* ** ** * *
1077675 TTTATAAT-TTA-ATAATAATTTTAAATCAAAATTGTTTTTGTTTTATGTTAAAATAAATCATAA
1 TTTATAATCTTATA-AATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATCAATCATAA
* * * * * * *
1077738 TTGGATGTTTGCATTGGAAAACAT---G--TA-GCCATCCACTAAGAAGAAAAGTCCATTGAGAG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * * *
1077797 TAACTCATGCC-TCCAAAAGTCTTTTTATTACTCGCTTTAAATGGT
129 TCACTCATGCCAT-CGAAAG-C--CTTATTACTCACTTTAAATGGT
* * * * ** *
1077842 TATATAAGCTTATAAATGATTTTAAA-CTGAAATCATTTTCATTTTTAGAGAAAACAGAT-ATAA
1 TTTATAATCTTATAAATGATTTTAAATC-AAAATCATTTTCATTTTTTGTTAAATCA-ATCATAA
* ** * * * * *
1077905 TTTGATGTTTGTGTTGGAAAACATGAAGCTGAAGCCATCCATTTACAAGAAAAGTCCATTTATAG
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAG
* * * * * * * *
1077970 TCATTTATACC-TTGAAAAGCGTAATCACTCGCTTTAAATGGT
129 TCACTCATGCCATCG-AAAGCCTTATTACTCACTTTAAATGGT
* * ** * * * * *
1078012 TTTGTAACCTTATAAATGATTTTAAATTGAAAT-ATTTTTGATATTTGGTTAAAATTGATTGCAT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCA-TTTTCATTTTTTGTT-AAA-TCAAT-CAT
* * * * * *
1078076 --TTGGATATTTGCATCAT-GG-AACGTGAAGCAGATGCTATCCATTAAGAAGAAAAGTCTATTT
62 AATTGGATGTTTGCAT--TGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTT
* * * *
1078137 -TAGTCAATCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGT
125 ATAGTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * *** ***
1078182 TTTATAATCTCATGAAT-AGTTTTAAATTGGAATGC-TTTTCATTTTTTGTTAAAATTGGTCATA
1 TTTATAATCTTATAAATGA-TTTTAAATCAAAAT-CATTTTCATTTTTTGTT-AAATCAATCATA
* * * * ** * * * *
1078245 TTTGGATTTTTGCTTTGAGAAATGTGAAGCAGATACTATCCATTGACAA-AAAGAGTCCTTTTAT
63 ATTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAA-AGTCCATTTAT
* * * * *
1078309 AGTCACCCAAGCCATCGAAAGCC-TAGTTACTTACTTTAATTCGT
127 AGTCACTCATGCCATCGAAAGCCTTA-TTACTCACTTTAAATGGT
* * * *
1078353 TTTATAATCTTATATATGATTTTAAATTAAAATAATTTTTA-TTTTTGTTCAAA-CATATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTT-AAATCA-ATCATAA
* * * *
1078416 TTGGATGTTTGCATTGGGAAACATTAAGCGGATGACATCTC-TTGATAAGAAAAGGCCATTTATA
64 TTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATC-CATTGATAAGAAAAGTCCATTTATA
* ** * *
1078480 GACACTCATG-CATTCGAAAGCCTTGGTACAT-GCTTTAATTGGT
128 GTCACTCATGCCA-TCGAAAGCCTTATTAC-TCACTTTAAATGGT
* * * *
1078523 TTTATAATCTTATAAATGATTTTAAGTCAAAATCCATTTT-GTTTTTGGTAAAAAT-AGATCATA
1 TTTATAATCTTATAAATGATTTTAAATCAAAAT-CATTTTCATTTTTTGT-TAAATCA-ATCATA
* * * ** * * * *
1078586 TTTGGATGTTTACAATGGGAAATGTGAAGCAAATGCTATCCATTGACAAAAAAAGTCCATTTATA
63 ATTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATA
* * * * * *
1078651 GTCACTCTTGCCTTCGAAAACCTTGTTACTCACTTTAACTAGT
128 GTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * * ** * * * *
1078694 TTTATAATCTTATAAATAATTTTAAGTCAAAATCTTTTTTGTTTGTGGTTAAATTAGATCATATT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTTAAATCA-ATCATAAT
* ** * *
1078759 TGGATGTTTGCATTGAGAAATGTGAAGCAGATGTCATCCATTGAGAAGAAAAGTCCATTTATAGT
65 TGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAGT
* * * *
1078824 CATTTAT-CCATCGAAA-ACTTAGTTACTTACTTTAAATGGT
130 CACTCATGCCATCGAAAGCCTTA-TTACTCACTTTAAATGGT
* * ** * * * * *
1078864 TTTATAAT-TTATAAATAATATTT-TATTGAAAT-GTATTTAAGTTTTGGTTTAA-CATATCATA
1 TTTATAATCTTATAAATGAT-TTTAAATCAAAATCAT-TTTCATTTTTTGTTAAATCA-ATCATA
* * * * * * *
1078925 ATTGGATGTTTGCATTTGGAAACATAAAGCAAAAGCCATCTATTGAGAAGAAAAGTCCATTTATT
63 ATTGGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATA
** * * * * *
1078990 GTTGCTCATGCTATCAAAACCCTTATTACTCGCTTTACATGGT
128 GTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* *
1079033 TTTAT--CCTATATAAATGATTTTAAATCGAAAT-ATTTTTCA-TTTTTGATTAAA-CATATCAT
1 TTTATAATCT-TATAAATGATTTTAAATCAAAATCA-TTTTCATTTTTTG-TTAAATCA-ATCAT
* * * *
1079093 AATTGCAT-TATTGTATTTGGGAAA-ATGCAAAGTGCA-A-GCTATACATTGATAAGAAAAGTCC
62 AATTGGATGT-TTGCA-TTGGGAAACATG--AA--GCAGATGCCATCCATTGATAAGAAAAGTCC
* * * * ** *
1079154 ATTTACAGTCACTCATACCTTCGAAAGCCTTGTTACTTGCTTTAAATGGC
121 ATTTATAGTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * *
1079204 TTTATAATCCTATAAATGATTTTAAATCAAAAT-ATTTTTC-TTTTTTGGTTCAAACCTATCATA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCA-TTTTCATTTTTT-GTT-AAATCAATCATA
* * * * * *
1079267 ATTGGGTGTTTTCATTGGGAAACGTGAAACGAAAT-CCATCCATTGATAAGAAAAGTCTATTTAT
63 ATTGGATGTTTGCATTGGGAAACATGAAGC-AGATGCCATCCATTGATAAGAAAAGTCCATTTAT
* * *
1079331 AGTCACTCATTCCATCGAAAGCCTTATTACTCGCTTTATATGGT
127 AGTCACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
* * *
1079375 TTTATAATCTTGTAAATGATTTTAAATCAAAATCTTTTTCATTTTTAGTTATAA-CATATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTTA-AATCA-ATCATAA
* * * *
1079439 TTGGATGTTTACATTAGGAAACATGAAG-GGAATGCCATCCATT-A-ACAGAAAAAGTCCTTTTA
64 TTGGATGTTTGCATTGGGAAACATGAAGCAG-ATGCCATCCATTGATA-AG-AAAAGTCCATTTA
*
1079501 TAGCCACTCAT
126 TAGTCACTCAT
1079512 CCGTTCTATA
Statistics
Matches: 3003, Mismatches: 705, Indels: 340
0.74 0.17 0.08
Matches are distributed among these distances:
163 1 0.00
164 34 0.01
165 3 0.00
166 1 0.00
167 66 0.02
168 274 0.09
169 446 0.15
170 803 0.27
171 1143 0.38
172 160 0.05
173 70 0.02
174 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
TTTATAATCTTATAAATGATTTTAAATCAAAATCATTTTCATTTTTTGTTAAATCAATCATAATT
GGATGTTTGCATTGGGAAACATGAAGCAGATGCCATCCATTGATAAGAAAAGTCCATTTATAGTC
ACTCATGCCATCGAAAGCCTTATTACTCACTTTAAATGGT
Found at i:1078837 original size:511 final size:507
Alignment explanation
Indices: 1075463--1079511 Score: 2443
Period size: 511 Copynumber: 7.9 Consensus size: 507
1075453 GATAAGTCCA
* ** * * * * *
1075463 TTTATAATCTTATAAATGATTTTAATTTGAAATCTTTTTCATTTTTTGTTAAAATTA-CTCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTT-GTTTTTGGTTAAAA-TAGATCATAT
* * * * *** * ** * *
1075527 ATGGATGTTTGCATAT-GAAAAGGTGAAGTGGATG-TCATCTATTGGCAAGAAAAATCCATTTAT
64 TTGGATGTTTACA-ATGGGAAACGTGAAGCAAATGCT-ATCCATTGATAAGAAAAGTCTATTTAT
* * * * *
1075590 AGTCACTTATG-CTATTGAAAACATTGTTACTCATTTTAAATAGTTTTATAATAC-TATAAATGA
127 AGTCACTCATGCCT-TCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAAT-CTTATAAATGA
* * *** * * * * * *
1075653 TTTTAAATCAAATTCTATTTCATTTTTGGTTCAAACCTACCGTAATTAGATGTTTACGTTGGGAA
190 TTTTAAATCAAAATCT-TTT-TTTTTTGGTT-AAATAGATCATAATTGGATGTTTGCATTGAGAA
** * * * * * * * * * *
1075718 ACATGAATTC-GATGGCATGCATTAAGAAAAAAAGTTCATTTATTGTCACTCATGCCTTCAAAAG
252 ATGTGAA-GCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAG
* ** * * * * * ** * *
1075782 TCTTA-TTACTCTTTTTAAATGATTTTATAGTCCTATAAAT-ATTTTCAATGGAAATCTTTCTCA
316 -CCTAGTTACTCACTTTAATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAATATTT-TTA
* * * * ** * * * ** *
1075845 TCTTTGGTCAAAACAAATCATATTTCAATGTTTGCATAGAGAAACATGAAGCTGATGCCATCCAT
379 TTTTTGTTC-AAACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCATCCAT
* ** * * * * * ** *
1075910 TAACGAGAAAAG-CCTATTTATAGTTACTCATACCTTCAAAAGTCTTGCTAC-TTGCCATCAATG
443 TGATAAGAAAAGTCC-ATTTATAGTCACTCATGCCTTCAAAAGCCTT-ATACATCGCTTTAAATG
1075973 GT
506 GT
* * * * * * *
1075975 TTTATAATCTTGTAAACGATTTTAAATCAAAATATTTTTTATTTTTAGTTAAAATTA-ATTAGAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAATA-TTTTTGTTTTTGGTTAAAA-TAGATCATAT
* * * * * * ** ** * *
1076039 TTGGTTGTTTGCATTAGGAAGCAT-AAAAAAGATGCCCTCCATTGATAATAAAAATCTATTTATA
64 TTGGATGTTTACAATGGGAAACGTGAAGCAA-ATGCTATCCATTGATAAGAAAAGTCTATTTATA
* * * *
1076103 GTCACTTATGCCATC-AAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTGTAAATGATT
128 GTCACTCATGCCTTCGAAAA-CCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATT
* * ** * *
1076167 TTAAATCAAAAT-ATTTTTTTTTGGTTCAA-AGCTATCATAATTTAATGTTTGCATCGAGCAATG
192 TTAAATCAAAATCTTTTTTTTTTGGTTAAATAG--ATCATAATTGGATGTTTGCATTGAGAAATG
* * * * * *
1076230 AGAAGCGGATGCCATCCATTGATAAGAAAAGTCCACTTATAATCACTAATGCCATCGAAAGCCTA
255 TGAAGCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTA
* * * * ** * *
1076295 GTTACTCAGTTTAAATT-GTTTTATTATCTTATAAATAATTCTAAACCAAAATCAGTTTTCTTTT
320 GTTACTCACTTT-AATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAAT-ATTTTTATTTT
** * * * * *
1076359 ACTTCAAACCA-AT-AGTAATTTGATGTTTGCATTAGAAAACATCAAA-CAAATGGCATCCATTG
383 TGTTCAAA-CATATCA-TAATTGGATGTTTGCATTGGGAAACAT-AAAGCAAAAGCCATCCATTG
* * * *
1076421 ATAAGAAAAGTCCAGTTATAGTCACTTATGCCTTCAAAAGCCTTGTAC-TCGTTTTAAATGGT
445 ATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATACATCGCTTTAAATGGT
* * * * *
1076483 TTTATAATCTTA-ATAATGATTATAAGTCAAAATATTTTTGTTTTTTGTTAAAACATATCATATT
1 TTTATAATCTTATA-AATGATTTTAAATCAAAATATTTTTGTTTTTGGTTAAAATAGATCATATT
* ** * *
1076547 TGGATGTTTGC-ATCAAGAAACATGAAGCAGATG-TCATCCATTGATAAGAAAAGTCTATTTATA
65 TGGATGTTTACAAT-GGGAAACGTGAAGCAAATGCT-ATCCATTGATAAGAAAAGTCTATTTATA
* * * *
1076610 GTCAGTCAT--CTATC-AAAACTCTTGTTACTCACTTTAAATAGTTTTATAGT-TCATAAATGAT
128 GTCACTCATGCCT-TCGAAAAC-CTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* ** * * *
1076671 ATTAAATTGAAATCTTTTTGGTTCTTGGTTCAAACATATCATAATTGGATGTTTGCATT-AGCAA
191 TTTAAATCAAAATCTTTTT--TTTTTGGTT-AAATAGATCATAATTGGATGTTTGCATTGAG-AA
* * * * * * * * *
1076735 ATATGAAGC-GAAAGGCATCTATTGACAAGAAAAGTTCATTTATAGTCGCTCATGACATCAAAAC
252 ATGTGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAG
* * * * * * * ** *
1076799 CCTTGTCACTGACTTT-ATATAGTTTTGTAATAC--ATTAATGATTCTAAATTGTAATCTTTTTC
316 CCTAGTTACTCACTTTAAT-TGGTTTTATAAT-CTTATAAATGATTTTAAATTAAAATATTTTT-
* * * * * * * *
1076861 ATTTTTAGCTAAAATAGATCAAAATTGGATATTTGCATTTGGAAA-ATATGAAACAAAAGCCATC
378 ATTTTT-GTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATA--AAGCAAAAGCCATC
* * *
1076925 CATTGATAAAAAAAAGTCCATTTACAAG-CACTCATGCCTTCAAAAGCCTTAT-CACTCAC-TTA
440 CATTGAT-AAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCAAAAGCCTTATACA-TCGCTTTA
*
1076987 AATAGT
502 AATGGT
* ** * * *
1076993 TTTATAATCTTATAAATGATTTTAAATCAAAATCATTCTCATTTTTTGTTAAAGTCA-ATCATAA
1 TTTATAATCTTATAAATGATTTTAAATCAAAAT-ATTTTTGTTTTTGGTTAAAAT-AGATCATAT
* ** * * * *
1077057 TTGTATGTTTACTTTGGGAAACATGAAGCAAGA-GCCATCGATTGATAAGAAAATTCTATTTATA
64 TTGGATGTTTACAATGGGAAACGTGAAGCAA-ATGCTATCCATTGATAAGAAAAGTCTATTTATA
* * * * * *
1077121 GTCACTCATGCCATCGAAAGCCTTATTGCTCACTTTAAATAGTTTTATAATCCTATAAATGATTT
128 GTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTT
* * * *
1077186 TAAATCAAAATCTCTTCTATTTTTGG-GACAA-AGCTATCATAATTGGATGTTTCCATTGGGAAA
193 TAAATCAAAATCT-TT-TTTTTTTGGTTA-AATAG--ATCATAATTGGATGTTTGCATTGAGAAA
** * * * * * *
1077249 CATGAAGTAGAAGTCATCCATTGACAAGAAAAGTCTATTTATGGTCACT-AGTACCATCG-AAGA
253 TGTGAAGCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCATCGAAAG-
** ** * * *
1077312 CCTAGTTA-TCTACTTTAAAAGGTTTTA-AATCTTATCGATGATTTTAAA-TCAATTTTTTTTCA
316 CCTAGTTACTC-ACTTTAATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAATATTTTT-A
* * * * * *** *** *
1077374 TTTATGGTTCAAACTTATCATAATTGGACGTTTACAATGGGAAGTGTAAAGTGGATGCCATCCAT
379 TTT-TTGTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCATCCAT
* * * * * * *
1077439 TGATAAGAAAAGTCCATTTATAGTCACCCATGGCTTCGAAAGCATTGTTGC-TTGCTTTAAATTG
443 TGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT-ATACATCGCTTTAAA-TG
1077503 G-
506 GT
* * * ** * ** *
1077504 TTTATAATCCTATAAATGATTTGAAGTTGAAATATCTTTTGGTTTTACTTAAAACAGATCATATT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATAT-TTTTGTTTTTGGTTAAAATAGATCATATT
* ** * ** ** * * * * * *
1077569 TAGATGTTGGCATTAAGAAAATTGAAGCAAATCCTATCCATTAAGAAAAAAAGTCAATTTAAAG-
65 TGGATGTTTACAATGGGAAACGTGAAGCAAATGCTATCCATTGATAAGAAAAGTCTATTTATAGT
* * * * * * *
1077633 CTACTTATGACATCG-ACACTCTTATTACTCATTTTAAATGGTTTTATAAT-TTA-ATAATAATT
130 C-ACTCATGCCTTCGAAAAC-CTTGTTACTCACTTTAAATGGTTTTATAATCTTATA-AATGATT
* *
1077695 TTAAATCAAAAT-TGTTTTTGTTTTATGTTAAAATAAATCATAATTGGATGTTTGCATTG-G-AA
192 TTAAATCAAAATCT-TTTTT-TTTT-GGTT-AAATAGATCATAATTGGATGTTTGCATTGAGAAA
* * * * * * *
1077757 ----AA-CATG-TAGCCATCCACTAAGAAGAAAAGTCCATTGAGAGTAACTCATGCC-TCCAAAA
253 TGTGAAGCA-GAT-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCAT-CGAAA
* * * * * * *
1077815 GTCTTTTTA-TTACTCGCTTTAAATGGTTATATAAGCTTATAAATGATTTTAAACTGAAATCATT
315 G-C---CTAGTTACTCACTTTAATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAAT-ATT
* *** * * ** * * **
1077879 TTCATTTTTAGAGAAAACAGAT-ATAATTTGATGTTTGTGTTGGAAAACATGAAGCTGAAGCCAT
375 TTTATTTTT-GTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCAT
* * * * * * * *
1077943 CCATTTACAAGAAAAGTCCATTTATAGTCATTTATACCTTGAAAAGCGTAAT-CACTCGCTTTAA
439 CCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATACA-TCGCTTTAA
1078007 ATGGT
503 ATGGT
* * ** * * ***
1078012 TTTGTAACCTTATAAATGATTTTAAATTGAAATATTTTTGATATTTGGTTAAAATTGATTGCATT
1 TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTG-TTTTTGGTTAAAATAGATCATATT
* * * * *
1078077 TGGATATTTGCATCAT-GG-AACGTGAAGCAGATGCTATCCATTAAGAAGAAAAGTCTATTT-TA
65 TGGATGTTTACA--ATGGGAAACGTGAAGCAAATGCTATCCATTGATAAGAAAAGTCTATTTATA
* * * * *
1078139 GTCAATCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTCATGAAT-AGTT
128 GTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA-TT
*** * * * * *
1078203 TTAAATTGGAATGCTTTTCATTTTTT-GTTAAAATTGGTCATATTTGGATTTTTGCTTTGAGAAA
192 TTAAATCAAAAT-CTTTT--TTTTTTGGTT-AAATAGATCATAATTGGATGTTTGCATTGAGAAA
* * * * *
1078267 TGTGAAGCAGATACTATCCATTGACAA-AAAGAGTCCTTTTATAGTCACCCAAGCCATCGAAAGC
253 TGTGAAGCAGATGCCATCCATTGACAAGAAA-AGTCCATTTATAGTCACTCATGCCATCGAAAGC
* * *
1078331 CTAGTTACTTACTTTAATTCGTTTTATAATCTTATATATGATTTTAAATTAAAATAATTTTTATT
317 CTAGTTACTCACTTTAATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAAT-ATTTTTATT
* ** * *
1078396 TTTGTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATTAAGCGGATGACATCTC-TTG
381 TTTGTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCATC-CATTG
* * * * * *
1078460 ATAAGAAAAGGCCATTTATAGACACTCATGCATTCGAAAGCCTTGGTACAT-GCTTTAATTGGT
445 ATAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTT-ATACATCGCTTTAAATGGT
* *
1078523 TTTATAATCTTATAAATGATTTTAAGTCAAAATCCA-TTTTGTTTTTGGTAAAAATAGATCATAT
1 TTTATAATCTTATAAATGATTTTAAATCAAAAT--ATTTTTGTTTTTGGTTAAAATAGATCATAT
* * * *
1078587 TTGGATGTTTACAATGGGAAATGTGAAGCAAATGCTATCCATTGACAAAAAAAGTCCATTTATAG
64 TTGGATGTTTACAATGGGAAACGTGAAGCAAATGCTATCCATTGATAAGAAAAGTCTATTTATAG
* * * *
1078652 TCACTCTTGCCTTCGAAAACCTTGTTACTCACTTTAACTAGTTTTATAATCTTATAAATAATTTT
129 TCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTT
* *
1078717 AAGTCAAAATCTTTTTTGTTTGTGGTTAAATTAGATCATATTTGGATGTTTGCATTGAGAAATGT
194 AAATCAAAATCTTTTTT-TTT-TGGTTAAA-TAGATCATAATTGGATGTTTGCATTGAGAAATGT
* * * * * *
1078782 GAAGCAGATGTCATCCATTGAGAAGAAAAGTCCATTTATAGTCATTTAT-CCATCGAAAACTTAG
256 GAAGCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTAG
* * * * * * *
1078846 TTACTTACTTTAAATGGTTTTATAAT-TTATAAATAATATTT-TATTGAAATGTATTTAAGTTTT
321 TTACTCACTTTAATTGGTTTTATAATCTTATAAATGAT-TTTAAATTAAAATAT-TTTTA-TTTT
* * * * *
1078909 GGTT-TAACATATCATAATTGGATGTTTGCATTTGGAAACATAAAGCAAAAGCCATCTATTGAGA
383 TGTTCAAACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCATCCATTGATA
* ** * *
1078973 AGAAAAGTCCATTTATTGTTGCTCATG-CTATCAAAACCCTTATTAC-TCGCTTTACATGGT
448 AGAAAAGTCCATTTATAGTCACTCATGCCT-TCAAAAGCCTTA-TACATCGCTTTAAATGGT
* * * *
1079033 TTTAT--CCTATATAAATGATTTTAAATCGAAATATTTTTCATTTTTGATTAAACAT--ATCATA
1 TTTATAATCT-TATAAATGATTTTAAATCAAAATATTTTT-GTTTTTGGTTAAA-ATAGATCATA
* * * ** * * *
1079094 ATTGCATTATTGTA-TTTGGGAAA-ATGCAAAGTGC-AA-GCTATACATTGATAAGAAAAGTCCA
63 TTTGGA-TGTT-TACAATGGGAAACGTG--AA--GCAAATGCTATCCATTGATAAGAAAAGTCTA
* * * ** * *
1079155 TTTACAGTCACTCATACCTTCGAAAGCCTTGTTACTTGCTTTAAATGGCTTTATAATCCTATAAA
122 TTTATAGTCACTCATGCCTTCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAA
* *** * * *
1079220 TGATTTTAAATCAAAATATTTTTCTTTTTTGGTTCAAACCTATCATAATTGGGTGTTTTCATTGG
187 TGATTTTAAATCAAAAT-CTTTT-TTTTTTGGTT-AAATAGATCATAATTGGATGTTTGCATTGA
* * * * * *
1079285 GAAACGTGAAACGAAAT-CCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATTCCATCGA
249 GAAATGTGAAGC-AGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGA
* * * *
1079349 AAGCCTTA-TTACTCGCTTT-ATATGGTTTTATAATCTTGTAAATGATTTTAAATCAAAATCTTT
313 AAGCC-TAGTTACTCACTTTAAT-TGGTTTTATAATCTTATAAATGATTTTAAATTAAAATATTT
* * * ** *
1079412 TTCATTTTTAGTT-ATAACATATCATAATTGGATGTTTACATTAGGAAACATGAAGGGAATGCCA
376 TT-ATTTTT-GTTCA-AACATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCA
* *
1079476 TCCATT-A-ACAGAAAAAGTCCTTTTATAGCCACTCAT
438 TCCATTGATA-AG-AAAAGTCCATTTATAGTCACTCAT
1079512 CCGTTCTATA
Statistics
Matches: 2730, Mismatches: 635, Indels: 343
0.74 0.17 0.09
Matches are distributed among these distances:
503 2 0.00
504 35 0.01
505 26 0.01
506 47 0.02
507 167 0.06
508 430 0.16
509 268 0.10
510 501 0.18
511 591 0.22
512 402 0.15
513 215 0.08
514 41 0.02
515 5 0.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (507 bp):
TTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTGTTTTTGGTTAAAATAGATCATATTT
GGATGTTTACAATGGGAAACGTGAAGCAAATGCTATCCATTGATAAGAAAAGTCTATTTATAGTC
ACTCATGCCTTCGAAAACCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAA
ATCAAAATCTTTTTTTTTTGGTTAAATAGATCATAATTGGATGTTTGCATTGAGAAATGTGAAGC
AGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATCGAAAGCCTAGTTACT
CACTTTAATTGGTTTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTATTTTTGTTCAAA
CATATCATAATTGGATGTTTGCATTGGGAAACATAAAGCAAAAGCCATCCATTGATAAGAAAAGT
CCATTTATAGTCACTCATGCCTTCAAAAGCCTTATACATCGCTTTAAATGGT
Found at i:1080726 original size:73 final size:73
Alignment explanation
Indices: 1080575--1080736 Score: 198
Period size: 73 Copynumber: 2.2 Consensus size: 73
1080565 NNNNNNNAAT
* * * *
1080575 CGGGTTCAGAGACAGAAGCAACTTAATCGACTAAGAAGTTTTGTTAGTCGACTAAGAGGCTACTA
1 CGGGTTCAGAGACAGAAACAACTTAATCGACTAAGAAGTTTTGATAGTCGACAAAAAGGCTACTA
*
1080640 TCAAAAAC
66 CCAAAAAC
* * * * * *
1080648 CGGGTTCAGAGATAGAAACGACTTAATCGACTAAGAAGTTTTGATAGTTGACAAAAAGGTTATTG
1 CGGGTTCAGAGACAGAAACAACTTAATCGACTAAGAAGTTTTGATAGTCGACAAAAAGGCTACTA
*
1080713 CCAGAAAC
66 CCAAAAAC
* *
1080721 TGGGTTTAGAGACAGA
1 CGGGTTCAGAGACAGA
1080737 GATGGCTTAG
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (73 bp):
CGGGTTCAGAGACAGAAACAACTTAATCGACTAAGAAGTTTTGATAGTCGACAAAAAGGCTACTA
CCAAAAAC
Found at i:1082382 original size:21 final size:20
Alignment explanation
Indices: 1082338--1082383 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
1082328 AAACTTAAAG
* *
1082338 AAGAAGAAGAAAAAGAAGAC
1 AAGAAGAAGAAAAAGAAAAA
*
1082358 AAGAGAGAAGTAAAAGAAAAA
1 AAGA-AGAAGAAAAAGAAAAA
1082379 AAGAA
1 AAGAA
1082384 AAGCATTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.72, C:0.02, G:0.24, T:0.02
Consensus pattern (20 bp):
AAGAAGAAGAAAAAGAAAAA
Found at i:1084138 original size:171 final size:170
Alignment explanation
Indices: 1083840--1085649 Score: 1255
Period size: 171 Copynumber: 10.6 Consensus size: 170
1083830 NNNTTAAAAT
* *
1083840 GAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGGA-TATTTCATGTCAATGGATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTT-GTGTCAATGGATGGCTT
* * * * * * ** * * **
1083904 TTGCTTCACA-TTTCTCAAGGCAAACATCCAATAATCAGCTATTTTAATGACAACTAAAAAAAAA
64 TTGCTTCACATTTTCT-AAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAA
* * * * *
1083968 TTCAACTTAAAATAATT-TGTAAGGTTATAAAATCGTTTAAGGT
128 TTCAACTTAAAATAATTATG-AAGATTATAAAACCATTTAAAGC
** * * * * * * *
1084011 GAGTAATAATACTTTTGAAGGGATGAGCGACTATGAAGGGACTCCTTGTGCCAATGGATGGCTTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTTGTGTCAATGGATGGCTTT
* *
1084076 TGTTTCACATTTTCTGAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAATT
65 TGCTTCACATTTTCTAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAATT
* *
1084141 CAA-TTCAAAATTAATTGTG-AGATTATAAAACTATTTAAAGC
130 CAACTT-AAAA-TAATTATGAAGATTATAAAACCATTTAAAGC
* * * * * *
1084182 AAGTAATAAGGCTTTCGAAGGCAGGAGTGACTATATATAGACTTTTCT-TGCTAATAGATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTGT-C-AATGGATGGCTT
* * * * *
1084246 TTGCTTCACGTTTCTCT-A-GTAGACATTCAATTATAATATGTTTTAACCAAGAATGTAAAAAAA
64 TTGCTTCACATTT-TCTAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAA
* *
1084309 TTTAACTTAAAATCAATTATG-AGAGTATAAAACCATTTAACA-C
128 TTCAACTTAAAAT-AATTATGAAGATTATAAAACCATTTAA-AGC
** * * * * * * *
1084352 GAGTAATAATACTTTTGAAGGTATGAGTGACTATAAATAGACTTTTCTTCTCAATGGGTAGCTTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-GTGTCAATGGATGGCTTT
* * * * * *
1084417 TGGTTCAC-GTTTCTCAGGGTAAAAATTAAATTATAAT-TTGTTTTAATC-AAAATAGTAAAAAA
65 TGCTTCACATTTTCT-AAGGTAAACATTCAATTATAATCTT-TTTTAACCAAAAAT-GTAAAAAA
* ** * *
1084479 ATTAAACTTTTAATCAATTATGAA-TTTATAAAACCATTTAAAGT
127 ATTCAACTTAAAAT-AATTATGAAGATTATAAAACCATTTAAAGC
* * * * * ** * *
1084523 GAATAATAGGGCTTCCGAAGGCATGATTGACTATAAATGGGCTTTTGTAGTCAACAGATGCCATT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGT-GTCAATGGATGGCTTT
* * * * * * *
1084588 CGCTTCAC-GTTTCTTAAGGAAAATATCCAATTATAATCTATATTAA-CAAAAAT-TGAAAAAAA
65 TGCTTCACATTTTC-TAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGT-AAAAAAA
* * *
1084650 TTCAACTTAGAAA-AATTTAT-AAGATTATAAAATCGTTTAAAGT
128 TTCAACTTA-AAATAA-TTATGAAGATTATAAAACCATTTAAAGC
* * * * *
1084693 AAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATAGATATTTTGTGCCAATGGATGGCTTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-CTTTTGTGTCAATGGATGGCTTT
* * * ** * * * * * *
1084758 TTCTTCACGTTTTATGGGGCAAATATTCAAATGTAAT-TTGTTTTAACCAAAAATCTAAACAAAT
65 TGCTTCACATTTTCTAAGGTAAACATTCAATTATAATCTT-TTTTAACCAAAAATGTAAAAAAAT
* * * *
1084822 TCAACTCAAAATTAATTATG-AGATCATAAAATCATTTCAAGC
129 TCAACTTAAAA-TAATTATGAAGATTATAAAACCATTTAAAGC
* * * * * *
1084864 GAGTAATAATGCTTTCGAAGGCGTAAGTGACTACAAATGGACTCTTCGTATCAATGGATGGCTTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTTGTGTCAATGGATGGCTTT
* * * * * * * * * *
1084929 CGCTTCACGTTTCCTATGGTAAACATTTAATTATAATATATTTT-GCCTAAAATGTAAAAACATT
65 TGCTTCACATTTTCTAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAATT
* * * *
1084993 GAACTTAAAATCAATTATG-ATATTATAAAACTATTTAAGGC
130 CAACTTAAAAT-AATTATGAAGATTATAAAACCATTTAAAGC
* * * * * * * *
1085034 TAGTAATAATGCTTTTGAAAGTATGAGTGACTACAAATGCACTTTTTGTGTCAAAGGATGGCTTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC-TTTTGTGTCAATGGATGGCTTT
* * * * * * * **
1085099 TGGTTTACGTGTCCTAAGGTAAACATTCAATTCTAATATGTTTTT-GTCAAAAA--TAAAAAGCA
65 TGCTTCACATTTTCTAAGGTAAACATTCAATTATAATCT-TTTTTAACCAAAAATGTAAAAA--A
*
1085161 ATTCAACTTAAAATCAATTATG-AGATTATAAAACCATTTAAACC
127 ATTCAACTTAAAAT-AATTATGAAGATTATAAAACCATTTAAAGC
* * * * *
1085205 AAGTAATAAGGCTTTCGAAGGCATAAGAGACTATAAAT-GAGCTTTTGTTATCAATGCATGGCTT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA-CTTTTG-TGTCAATGGATGGCTT
* * * * * * * *
1085269 TTGCTTCACA-TTTCTTAGGGCAGATATTCAATTATAATCTGTTTTGA-GAAAAAAGTAAAAAAA
64 TTGCTTCACATTTTC-TAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGT--AAAAA
* * *
1085332 AATTCAACTTAAAATTAATTATGAA-TTTATAAAACCCTTTAAAGG
126 AATTCAACTTAAAA-TAATTATGAAGATTATAAAACCATTTAAAGC
* * * * ** *
1085377 GAGTAATAGGGCTTTCGAAGGCATGATTAACTATAAATGGACTTTTCTTGTCAACAGATGGCATT
1 GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-GTGTCAATGGATGGCTTT
* * * * * * * ** * *
1085442 CGCATCACA-TTTCTCAAGGTAAACATCCAATTATCAGCTATGTTAATGAAAACT-AAAAAAAAT
65 TGCTTCACATTTTCT-AAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAAT
* * * *
1085505 TCAACTTAAAATAATTTAT-AAGGTTATAACATCGTTTAAAAG-
129 TCAACTTAAAATAA-TTATGAAGATTATAAAACCATTT-AAAGC
*** * * ** *
1085547 GAGTGCGAAGGCTTTC-AGAGGGATGAGTGATTATGAAA-GGACTCTTCATGTCAATGGACGGCT
1 GAGTAATAAGGCTTTCGA-AGGCATGAGTGACTAT-AAATGGACT-TTTGTGTCAATGGATGGCT
*
1085610 TTTGCTTCATATTTTCTAAGGTAAACATTCAATTATAATC
63 TTTGCTTCACATTTTCTAAGGTAAACATTCAATTATAATC
1085650 NNNNNNNNNN
Statistics
Matches: 1285, Mismatches: 290, Indels: 129
0.75 0.17 0.08
Matches are distributed among these distances:
168 3 0.00
169 22 0.02
170 504 0.39
171 597 0.46
172 143 0.11
173 11 0.01
174 5 0.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (170 bp):
GAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTGTCAATGGATGGCTTTT
GCTTCACATTTTCTAAGGTAAACATTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAATTC
AACTTAAAATAATTATGAAGATTATAAAACCATTTAAAGC
Found at i:1084477 original size:341 final size:339
Alignment explanation
Indices: 1083841--1085430 Score: 1217
Period size: 341 Copynumber: 4.7 Consensus size: 339
1083831 NNTTAAAATG
* * * *
1083841 AGTAATAAGGCTTTCGAAGGTATG-AGTGACTATAAATGGA-TATTTCATGTCAATGGATGGCTT
1 AGTAATAAGGCTTTCGAAGGCA-GAAGTGACTATAAATGGACT-TTTCTTCTCAATAGATGGCTT
* * * * * * * * ** * * * *
1083904 TTGCTTCACATTTCTCAAGGCAAACATCCAATAATCAGCTATTTTAATGACAACT-AAAAAAAAA
64 TCGCTTCACGTTTCT-TAGGTAGACATTCAATTATAATATATTTTAA-CAAAAATGTAAAAAAAA
* * * ** *
1083968 TTCAACTTAAAAT-AATT-TGTAAGGTTATAAAATCGTTTAAGGTGAGTAATAATACTTTTGAAG
127 TTCAACTTAAAATCAATTATG--AGATTATAAAACCATTTAA-ACGAGTAATAATGCTTTTGAAG
* * * ** * * * * * *
1084031 GGATGAGCGACTATGAAGGGACTCCTTGTGC-CAATGGATGGCTTTTGTTTCACATTTTCTGAGG
189 GTATGAGTGACTATAAATAGACT-TTTCTTCTCAATGGATGGCTTTTGGTTCACGTTTTCAG-GG
* * *
1084095 TAAACATTCAATTATAATCTT-TTTTAACCAAAAATGTAAAAAAATTCAA-TTCAAAATTAATTG
252 TAAACATTAAATTATAAT-TTGTTTTAACCAAAAATGTAAAAAAATTCAACTT-AAAATCAATTA
*
1084158 TGAGATTATAAAACTATTTAAAGCA
315 TGAGATTATAAAACCATTTAAAGCA
* * *
1084183 AGTAATAAGGCTTTCGAAGGCAGGAGTGACTATATATAGACTTTTCTTGCT-AATAGATGGCTTT
1 AGTAATAAGGCTTTCGAAGGCAGAAGTGACTATAAATGGACTTTTCTT-CTCAATAGATGGCTTT
* * *
1084247 TGCTTCACGTTTCTCTA-GTAGACATTCAATTATAATATGTTTTAACCAAGAATGT-AAAAAAAT
65 CGCTTCACGTTTCT-TAGGTAGACATTCAATTATAATATATTTTAA-CAAAAATGTAAAAAAAAT
* * *
1084310 TTAACTTAAAATCAATTATGAGAGTATAAAACCATTTAACACGAGTAATAATACTTTTGAAGGTA
128 TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA-ACGAGTAATAATGCTTTTGAAGGTA
* *
1084375 TGAGTGACTATAAATAGACTTTTCTTCTCAATGGGTAGCTTTTGGTTCACGTTTCTCAGGGTAAA
192 TGAGTGACTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGGTTCACGTTT-TCAGGGTAAA
* * * **
1084440 AATTAAATTATAATTTGTTTTAATC-AAAATAGTAAAAAAATTAAACTTTTAATCAATTATGA-A
256 CATTAAATTATAATTTGTTTTAACCAAAAAT-GTAAAAAAATTCAACTTAAAATCAATTATGAGA
*
1084503 TTTATAAAACCATTTAAAGTGA
320 -TTATAAAACCATTTAAAG-CA
* * * * * ** * * *
1084525 A-TAATAGGGCTTCCGAAGGCATG-ATTGACTATAAATGGGCTTTTGTAGTCAACAGATGCCATT
1 AGTAATAAGGCTTTCGAAGGCA-GAAGTGACTATAAATGGACTTTTCTTCTCAATAGATGGCTTT
* * * * * * *
1084588 CGCTTCACGTTTCTTAAGGAAAATATCCAATTATAATCTATATTAACAAAAAT-TGAAAAAAATT
65 CGCTTCACGTTTCTT-AGGTAGACATTCAATTATAATATATTTTAACAAAAATGTAAAAAAAATT
* * * * *
1084652 CAACTTAGAAA--AATTTATAAGATTATAAAATCGTTTAAA-GTAAGTAATAAGGCTTTCGAAGG
129 CAACTTA-AAATCAA-TTATGAGATTATAAAACCATTTAAACG--AGTAATAATGCTTTTGAAGG
* * * **
1084714 TATGAGTGACTATAAATAGATATTTTGTGC-CAATGGATGGCTTTTTCTTCACGTTTT-ATGGGG
190 TATGAGTGACTATAAATAGA-CTTTTCTTCTCAATGGATGGCTTTTGGTTCACGTTTTCA--GGG
* * * * * * *
1084777 CAAATATTCAAA-TGTAATTTGTTTTAACCAAAAATCTAAACAAATTCAACTCAAAATTAATTAT
252 TAAACATT-AAATTATAATTTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTAT
* * * *
1084841 GAGATCATAAAATCATTTCAAGCG
316 GAGATTATAAAACCATTTAAAGCA
* * * * * *
1084865 AGTAATAATGCTTTCGAAGGC-GTAAGTGACTACAAATGGACTCTTCGTATCAATGGATGGCTTT
1 AGTAATAAGGCTTTCGAAGGCAG-AAGTGACTATAAATGGACTTTTCTTCTCAATAGATGGCTTT
* * * ** * *
1084929 CGCTTCACGTTTCCTATGGTAAACATTTAATTATAATATATTTTGCCTAAAATGT-AAAAACATT
65 CGCTTCACGTTTCTTA-GGTAGACATTCAATTATAATATATTTTAACAAAAATGTAAAAAAAATT
* * * * * *
1084993 GAACTTAAAATCAATTATGATATTATAAAACTATTTAAGGCTAGTAATAATGCTTTTGAAAGTAT
129 CAACTTAAAATCAATTATGAGATTATAAAACCATTTAA-ACGAGTAATAATGCTTTTGAAGGTAT
* * * * * * *
1085058 GAGTGACTACAAAT-GCACTTTT-TGTGTCAAAGGATGGCTTTTGGTTTACGTGTCCTAAGGTAA
193 GAGTGACTATAAATAG-ACTTTTCT-TCTCAATGGATGGCTTTTGGTTCACGTTTTC-AGGGTAA
* * * ***
1085121 ACATTCAATTCTAATATGTTTTTGTCAAAAA--TAAAAAGCAATTCAACTTAAAATCAATTATGA
255 ACATTAAATTATAATTTGTTTTAACCAAAAATGTAAAAA--AATTCAACTTAAAATCAATTATGA
*
1085184 GATTATAAAACCATTTAAACCA
318 GATTATAAAACCATTTAAAGCA
* * * *
1085206 AGTAATAAGGCTTTCGAAGGCATAAGAGACTATAAAT-GAGCTTTTGTTATCAAT-GCATGGCTT
1 AGTAATAAGGCTTTCGAAGGCAGAAGTGACTATAAATGGA-CTTTTCTTCTCAATAG-ATGGCTT
* * * * * * * * *
1085269 TTGCTTCACATTTCTTAGGGCAGATATTCAATTATAATCTGTTTTGAGAAAAAAGTAAAAAAAAA
64 TCGCTTCACGTTTCTTA-GGTAGACATTCAATTATAATATATTTTAACAAAAATGT-AAAAAAAA
* * * ** *
1085334 TTCAACTTAAAATTAATTATGA-ATTTATAAAACCCTTTAAAGGGAGTAATAGGGCTTTCGAAGG
127 TTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAA-CGAGTAATAATGCTTTTGAAGG
* * * * *
1085398 CATGATTAACTATAAATGGACTTTTCTTGTCAA
190 TATGAGTGACTATAAATAGACTTTTCTTCTCAA
1085431 CAGATGGCAT
Statistics
Matches: 988, Mismatches: 206, Indels: 107
0.76 0.16 0.08
Matches are distributed among these distances:
339 9 0.01
340 34 0.03
341 735 0.74
342 122 0.12
343 86 0.09
344 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (339 bp):
AGTAATAAGGCTTTCGAAGGCAGAAGTGACTATAAATGGACTTTTCTTCTCAATAGATGGCTTTC
GCTTCACGTTTCTTAGGTAGACATTCAATTATAATATATTTTAACAAAAATGTAAAAAAAATTCA
ACTTAAAATCAATTATGAGATTATAAAACCATTTAAACGAGTAATAATGCTTTTGAAGGTATGAG
TGACTATAAATAGACTTTTCTTCTCAATGGATGGCTTTTGGTTCACGTTTTCAGGGTAAACATTA
AATTATAATTTGTTTTAACCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA
AACCATTTAAAGCA
Found at i:1085277 original size:682 final size:679
Alignment explanation
Indices: 1083841--1085419 Score: 1742
Period size: 682 Copynumber: 2.3 Consensus size: 679
1083831 NNTTAAAATG
* * * *
1083841 AGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGGATATTTCATGTCAATGGATGGCTTTT
1 AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGCT-TTT-GTATCAAT-GATGGCTTTT
* * * * * * *
1083906 GCTTCACATTTCTCAAGGCAAACATCCAATAATCAGCTATTTTAATGACAACTAAAAAAAAATTC
63 GCTTCACATTTCTTAAGGCAAATATCCAATTATAATCTATTTTAA--AAAAATAAAAAAAAATTC
* * * ** * *
1083971 AACTTAAAATAATTTGTAAGGTTATAAAATCGTTTAAGGTGAGTAATAATACTTTTGAAGGGATG
126 AACTTAAAATAATTTATAAGATTATAAAATCGTTTAAAGTGAGTAATAAGGCTTTCGAAGGCATG
* * ** * *
1084036 AGCGACTATGAAGGGACTCCTTGTGCCAATGGATGGCTTTTGTTTCACATTTTCTGAGGTAAACA
191 AGTGACTATAAATAGACTCCTTGTGCCAATGGATGGCTTTTGTTTCACATTTTATGAGGCAAACA
* * * * *
1084101 TTCAATTATAATCTTTTTTAACCAAAAATGTAAAAAAATTCAATTCAAAATTAATTGTGAGATTA
256 TTCAAATATAATCTTTTTTAACCAAAAATCTAAAAAAATTCAACTCAAAATTAATTATGAGATCA
* * * *
1084166 TAAAACTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCAGGAGTGACTATATATAGACTTTTCTT
321 TAAAACTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCAGAAGTGACTACAAATAGACTCTTCTT
* * *
1084231 GCTAATAGATGGCTTTTGCTTCACGTTTCTCTAGTAGACATTCAATTATAATATGTTTTAACCAA
386 GCTAATAGATGGCTTTCGCTTCACGTTTCTCTAGTAAACATTCAATTATAATATATTTTAACCAA
*
1084296 GAATGTAAAAAAATTTAACTTAAAATCAATTATGAGAGTATAAAACCATTTAACACGAGTAATAA
451 GAATGTAAAAAAATTGAACTTAAAATCAATTATGAGAGTATAAAACCATTTAACACGAGTAATAA
* * * *
1084361 TACTTTTGAAGGTATGAGTGACTATAAATAGACTTTTCTTCTCAATGGGTAGCTTTTGGTTCACG
516 TACTTTTGAAAGTATGAGTGACTACAAATAGACTTTTCTTCTCAAAGGATAGCTTTTGGTTCACG
* * * **
1084426 TTTCTCAGGGTAAAAATTAAATTATAATTTGTTTTAATCAAAATAGTAAAAAAATTAAACTTTTA
581 TTCCTCAAGGTAAAAATTAAATTATAATATGTTTTAATCAAAATAGTAAAAAAATTAAACTTAAA
**
1084491 ATCAATTATGAATTTATAAAACCATTTAAAGTGA
646 ATCAATTATGAATTTATAAAACCATTTAAAGCCA
* * * * * * *
1084525 A-TAATAGGGCTTCCGAAGGCATGATTGACTATAAATGGGCTTTTGTAGTCAACAGATGCCATTC
1 AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-GGCTTTTGTA-TCAA-TGATGGCTTTT
* * * **
1084589 GCTTCACGTTTCTTAAGGAAAATATCCAATTATAATCTATATTAACAAAAATTGAAAAAAATTCA
63 GCTTCACATTTCTTAAGGCAAATATCCAATTATAATCTATTTTAA-AAAAATAAAAAAAAATTCA
* *
1084654 ACTTAGAAA-AATTTATAAGATTATAAAATCGTTTAAAGTAAGTAATAAGGCTTTCGAAGGTATG
127 ACTTA-AAATAATTTATAAGATTATAAAATCGTTTAAAGTGAGTAATAAGGCTTTCGAAGGCATG
** * *
1084718 AGTGACTATAAATAGA-TATTTTGTGCCAATGGATGGCTTTT-TCTTCACGTTTTATGGGGCAAA
191 AGTGACTATAAATAGACT-CCTTGTGCCAATGGATGGCTTTTGT-TTCACATTTTATGAGGCAAA
* * *
1084781 TATTCAAATGTAAT-TTGTTTTAACCAAAAATCTAAACAAATTCAACTCAAAATTAATTATGAGA
254 CATTCAAATATAATCTT-TTTTAACCAAAAATCTAAAAAAATTCAACTCAAAATTAATTATGAGA
* * * *
1084845 TCATAAAA-TCATTTCAAGCGAGTAATAATGCTTTCGAAGGC-GTAAGTGACTACAAATGGACTC
318 TCATAAAACT-ATTTAAAGCAAGTAATAAGGCTTTCGAAGGCAG-AAGTGACTACAAATAGACTC
* *
1084908 TTCGTAT-C-AATGGATGGCTTTCGCTTCACGTTTC-CTATGGTAAACATTTAATTATAATATAT
381 TTC-T-TGCTAATAGATGGCTTTCGCTTCACGTTTCTCTA--GTAAACATTCAATTATAATATAT
* * * * * **
1084970 TTT-GCCTAA-AATGTAAAAACATTGAACTTAAAATCAATTATGATATTATAAAACTATTTAAGG
442 TTTAACC-AAGAATGTAAAAAAATTGAACTTAAAATCAATTATGAGAGTATAAAACCATTTAACA
* * * *
1085033 CTAGTAATAATGCTTTTGAAAGTATGAGTGACTACAAAT-GCACTTTT-TGTGTCAAAGGATGGC
506 CGAGTAATAATACTTTTGAAAGTATGAGTGACTACAAATAG-ACTTTTCT-TCTCAAAGGATAGC
* * * * **
1085096 TTTTGGTTTACGTGTCCT-AAGGTAAACATTCAATTCTAATATGTTTTTGTCAAAA-A-TAAAAA
569 TTTTGGTTCACGT-TCCTCAAGGTAAAAATTAAATTATAATATGTTTTAATCAAAATAGTAAAAA
*
1085158 GCAATTCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAA-CCA
633 --AATTAAACTTAAAATCAATTATGA-ATTTATAAAACCATTTAAAGCCA
* *
1085206 AGTAATAAGGCTTTCGAAGGCATAAGAGACTATAAATGAGCTTTTGTTATCAATGCATGGCTTTT
1 AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATG-GCTTTTG-TATCAATG-ATGGCTTTT
* * * *
1085271 GCTTCACATTTCTTAGGGCAGATATTCAATTATAATCTGTTTTGAGAAAAAAGTAAAAAAAAATT
63 GCTTCACATTTCTTAAGGCAAATATCCAATTATAATCTATTTT-A-AAAAAA-TAAAAAAAAATT
* * * * *
1085336 CAACTTAAAATTAA-TTATGAA-TTTATAAAACCCTTTAAAGGGAGTAATAGGGCTTTCGAAGGC
125 CAACTTAAAA-TAATTTAT-AAGATTATAAAATCGTTTAAAGTGAGTAATAAGGCTTTCGAAGGC
* * *
1085399 ATGATTAACTATAAATGGACT
188 ATGAGTGACTATAAATAGACT
1085420 TTTCTTGTCA
Statistics
Matches: 743, Mismatches: 121, Indels: 61
0.80 0.13 0.07
Matches are distributed among these distances:
680 6 0.01
681 16 0.02
682 511 0.69
683 127 0.17
684 78 0.10
685 5 0.01
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (679 bp):
AGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGCTTTTGTATCAATGATGGCTTTTGCT
TCACATTTCTTAAGGCAAATATCCAATTATAATCTATTTTAAAAAAATAAAAAAAAATTCAACTT
AAAATAATTTATAAGATTATAAAATCGTTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGA
CTATAAATAGACTCCTTGTGCCAATGGATGGCTTTTGTTTCACATTTTATGAGGCAAACATTCAA
ATATAATCTTTTTTAACCAAAAATCTAAAAAAATTCAACTCAAAATTAATTATGAGATCATAAAA
CTATTTAAAGCAAGTAATAAGGCTTTCGAAGGCAGAAGTGACTACAAATAGACTCTTCTTGCTAA
TAGATGGCTTTCGCTTCACGTTTCTCTAGTAAACATTCAATTATAATATATTTTAACCAAGAATG
TAAAAAAATTGAACTTAAAATCAATTATGAGAGTATAAAACCATTTAACACGAGTAATAATACTT
TTGAAAGTATGAGTGACTACAAATAGACTTTTCTTCTCAAAGGATAGCTTTTGGTTCACGTTCCT
CAAGGTAAAAATTAAATTATAATATGTTTTAATCAAAATAGTAAAAAAATTAAACTTAAAATCAA
TTATGAATTTATAAAACCATTTAAAGCCA
Found at i:1086340 original size:171 final size:170
Alignment explanation
Indices: 1085915--1086342 Score: 439
Period size: 172 Copynumber: 2.5 Consensus size: 170
1085905 TTAGCCAAGA
* * * * *
1085915 ATAAGTTTATAAAACCGTTTACAGCAAGTAACAAAGATTTCGAAGGCATGAGTGACTATAAATGG
1 ATAAGATTATAAAACCATTTA-AGCGAGTAATAAGGATTTCGAA-GCATGAGTGACTATAAATGG
* ** * *
1085980 ACTTTTCTTGACAATGGATGGCATCCACTTTATGTTTTTCAATGCAAACATCTAATTATGATAGG
64 ACTTTTCTTGACAATGGATGGCATCCACTTCATGTTTCCCAATGCAAACATCTAATTATAATAGA
** * *
1086045 TTTGAACCTAAGCCCAAAAACAAATTTGATTTAAAATTATTT
129 TTTGAACCTAAGAACAAAAACAAATTTAATGTAAAATTATTT
* * * * * * * *
1086087 ATAAAATTATAAAACTATTTAAAGCGAGTAACT-TGGCTTTTGATAGCATGAATTACTATAAATA
1 ATAAGATTATAAAACCATTT-AAGCGAGTAA-TAAGGATTTCGA-AGCATGAGTGACTATAAATG
* * * * *
1086151 GCCCTTTCTTGCCAATGGATGGCATCCAGTTCATGTTTCCCAATGCAAACATCTAATTATAATCG
63 GACTTTTCTTGACAATGGATGGCATCCACTTCATGTTTCCCAATGCAAACATCTAATTATAATAG
* ** *
1086216 ATTTTAACC-AAGAATGAAAA-ATATTTCAATGTAAAATTATTT
128 ATTTGAACCTAAGAACAAAAACAAATTT-AATGTAAAATTATTT
* * *
1086258 ATAAGCTTATTAAACCATTTAATGCGAGTAATAAGGATTTCGAAGCATTGAGTGAATATAAATGG
1 ATAAGATTATAAAACCATTTAA-GCGAGTAATAAGGATTTCGAAGCA-TGAGTGACTATAAATGG
* *
1086323 ACTTTTTTTGTCAATGGATG
64 ACTTTTCTTGACAATGGATG
1086343 ACTTTTGTAA
Statistics
Matches: 203, Mismatches: 46, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
170 12 0.06
171 80 0.39
172 109 0.54
173 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (170 bp):
ATAAGATTATAAAACCATTTAAGCGAGTAATAAGGATTTCGAAGCATGAGTGACTATAAATGGAC
TTTTCTTGACAATGGATGGCATCCACTTCATGTTTCCCAATGCAAACATCTAATTATAATAGATT
TGAACCTAAGAACAAAAACAAATTTAATGTAAAATTATTT
Found at i:1086614 original size:18 final size:18
Alignment explanation
Indices: 1086591--1086629 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
1086581 AGGTGAAAGG
1086591 AATTTTTTTCAATAAAAT
1 AATTTTTTTCAATAAAAT
*
1086609 AATTTTTTTTAATAAAAT
1 AATTTTTTTCAATAAAAT
1086627 AAT
1 AAT
1086630 ATTAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTTTTTTCAATAAAAT
Found at i:1088344 original size:170 final size:170
Alignment explanation
Indices: 1087836--1088738 Score: 442
Period size: 172 Copynumber: 5.3 Consensus size: 170
1087826 NNNNNNNNTA
* * * * * * * **
1087836 TTACTCACTTTAAATAGTTTTATAATATAAT-AATTGATTTCAA-TTTAATTTTTTACATTTTTG
1 TTACTCACTTTAAATGGTTTTATAATCTCATAAATT-ATTTTAAGTTGAATTTTTTATATTGTCA
* * * ** * ** * * * * *
1087899 GATAAAACATATTATAATTGAATGTTTTCCTCCA-AAAATATGATGTAAAAACCATTCATTGATA
65 GTTAAAACAGATGATAATTGAATG-TTTCCTTGAGGAAACGTGAAGTGAAAGCCATCCATTGA-C
* * * * * * *
1087963 AAAAAAAGTTCATTTATATTCACTCATGCGTTCGAAAG-CTTT
128 AAGAAAAGTCCCTTAATAGTCAATCATGCCTTCGAAAGTCTTT
* * * * * *
1088005 ATTACTCGCTTTAAATGGTTTTATAATCTCATAAATGATTTCAAGTTCAATATTTTTATATTTTT
1 -TTACTCACTTTAAATGGTTTTATAATCTCATAAATTATTTTAAGTTGAAT-TTTTTATATTGTC
* * *
1088070 AGTTAAAACAGATTATAATTGAATGTTTGCTTTAGGAAACGTGAAGTGAAAGCCATCCATTGACA
64 AGTTAAAACAGATGATAATTGAATGTTTCCTTGAGGAAACGTGAAGTGAAAGCCATCCATTGACA
* * *** * *
1088135 CGAAAAGTCTCTTAATAGTTGCTCATCCCTTCAAAAGTCTTT
129 AGAAAAGTCCCTTAATAGTCAATCATGCCTTCGAAAGTCTTT
* * *
1088177 TTACTCACTTTAAACGATTTTATAATCTTATAAATTATTTTAAGTTGAA-TTTTTATTAGTTGTC
1 TTACTCACTTTAAATGGTTTTATAATCTCATAAATTATTTTAAGTTGAATTTTTTA-TA-TTGTC
* * * * ** *
1088241 A-TTAAAATAGATGATAATTGGATGTTTTCCTTGA-GAAACTTGAAGTGAATGCCATCTGTTGAT
64 AGTTAAAACAGATGATAATTGAATG-TTTCCTTGAGGAAACGTGAAGTGAAAGCCATCCATTGAC
* *
1088304 AAGAAAAG-CCCATTCATAGTCAATCATGCCTTCGAAAGTCTTA
128 AAGAAAAGTCCC-TTAATAGTCAATCATGCCTTCGAAAGTCTTT
* * * * *
1088347 TTACTCACTTTAAATGGTTTAATAAAT-TGAT-AATTGATTTTAAGTTGAATTTTTTTTTCTTTT
1 TTACTCACTTTAAATGGTTTTAT-AATCTCATAAATT-ATTTTAAGTTGAA-TTTTTTAT-ATTG
** * * * * ** *
1088410 TTTGTCAAACCAGATTATAATCT-AATGTTTGCC--AAGGAAATATGAAG-CAACAGCCATCCAT
62 TCAGTTAAAACAGATGATAAT-TGAATGTTT-CCTTGAGGAAACGTGAAGTGAA-AGCCATCCAT
* * * * * * *
1088471 TGGTA-AAAAAAAGTTCACTT-ATAGTCAAAT-GTGCCTTTGAAAGCCCTA
124 T-G-ACAAGAAAAG-TCCCTTAATAGTC-AATCATGCCTTCGAAAGTCTTT
* * * * *
1088519 TTACTCGCTTTAAATGGTTTTATAAAT-TCATAACTGATTTTAAGTTGACTACTTTT-T-TTGTC
1 TTACTCACTTTAAATGGTTTTAT-AATCTCATAAATTATTTTAAGTTGAAT-TTTTTATATTGTC
* * * * * * ** * *
1088581 ----AATAGAGATTATAATTAAATATTTACCATGA-GAAACGTGAAGCAAAAGCCATCTATTGAT
64 AGTTAAAACAGATGATAATTGAATGTTT-CCTTGAGGAAACGTGAAGTGAAAGCCATCCATTGAC
* * * * * * *
1088641 AAGAAAAGTCCATTTATAATCACTTA-GCCTTCAAAAG-CATTA
128 AAGAAAAGTCCCTTAATAGTCAATCATGCCTTCGAAAGTC-TTT
* * *
1088683 TTACT-AGCTTTAAATGGTTTTATAATATCAT-AATTGATTTTAAATTTAATTTTTTA
1 TTACTCA-CTTTAAATGGTTTTATAATCTCATAAATT-ATTTTAAGTTGAATTTTTTA
1088739 CATTTTTGGA
Statistics
Matches: 572, Mismatches: 123, Indels: 82
0.74 0.16 0.11
Matches are distributed among these distances:
163 10 0.02
164 55 0.10
165 33 0.06
166 19 0.03
167 3 0.01
169 15 0.03
170 150 0.26
171 122 0.21
172 154 0.27
173 9 0.02
174 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (170 bp):
TTACTCACTTTAAATGGTTTTATAATCTCATAAATTATTTTAAGTTGAATTTTTTATATTGTCAG
TTAAAACAGATGATAATTGAATGTTTCCTTGAGGAAACGTGAAGTGAAAGCCATCCATTGACAAG
AAAAGTCCCTTAATAGTCAATCATGCCTTCGAAAGTCTTT
Found at i:1089302 original size:171 final size:169
Alignment explanation
Indices: 1088961--1090773 Score: 1457
Period size: 171 Copynumber: 10.6 Consensus size: 169
1088951 ACTTTAAACA
* * * **
1088961 ATTTTAAGTTGAATTTTTATTA-GTTTT-CATTAAAATAGATGATAATTTG-ATGTTTGCCTCAA
1 ATTTTAAGTTGAA-TTTT-TTACATTTTGC-TTAAAACAGATTATAA-TTGAATGTTTGCCTTGA
* * * *** * * *
1089023 GAAAGGTGAAGCGAATGCCATCCACCAAGAAGAAAAGTTCATTTATAGTCAATCATAG-CTTCGA
62 GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT-GCCTTCGA
* * * * *
1089087 AAGCCCTATTACTCACTTTAACTGATTTTATAAAT-TCGTAATTG
126 AAGCCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTG
* * * *
1089131 ATTTTAAGTCGACTTTTTTCACTATTTTGCTTAAAACAGAGTAAAATTGAATGTTTGCCTTGAGA
1 ATTTTAAGTTGAATTTTTT-AC-ATTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTGAGA
* * * * *
1089196 AATGTGAAGCAAAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCATTCATGCCTTCGAAAG
64 AACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
** *
1089261 TATTATTACTCGCTTTACATGGTTTTATAATCTCATAATTG
129 CCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
* * *
1089302 ATTTTAAGTTGAATTTTTTACATACATGGC-TAAAACAGATTATAATTTGAATGTTTGCCTAG-G
1 ATTTTAAGTTGAATTTTTTACAT--TTTGCTTAAAACAGATTATAA-TTGAATGTTTGCCTTGAG
* * * *
1089365 GAACGTGAAGCAAAAGCCATCCATT-AGCAAGAAAAGTCCATTTATAGTGAATCATGCCTTTGAA
63 AAACGTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* *
1089429 AG-CTCGATTACTCGCTTTATATGGTTTTATAAAT-TCATAATTG
127 AGCCT-TATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTG
* * ** * * *
1089472 ATTTTAAGTTAAATTTGTTTCCATTGTTTATCAAAACTGATTATACTTGAATGTTTGCCTTGAGA
1 ATTTTAAGTTGAATTT-TTTACATT-TTGCTTAAAACAGATTATAATTGAATGTTTGCCTTGAGA
* * * *
1089537 AACATGAAGCAAAAGCCATCCATTGGCAAGAAAAATCCATTTATATTCACTCATGCCTTCGAAAG
64 AACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
** * * * * *
1089602 CAGTACTACTCGTTTTAAATGATTTTATAATATCACAATTG
129 CCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
* * * *
1089643 ATTTTAAGCTT-AATTTTTTACATTTTTAG-ATAAAACATATTATATTTGAATGTTTGCCTTAAG
1 ATTTTAAG-TTGAATTTTTTACA-TTTT-GCTTAAAACAGATTATAATTGAATGTTTGCCTTGAG
* * * **
1089706 AAATGTGAAGCAAAAGCCATCCATTGACAAAAAAAGTCCATCTATAGTCACTCATG-CTTTTATA
63 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-A
*
1089770 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTA
127 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
* * * *
1089813 ATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACACATTATAATTGAATGTTTACC-TCAGG
1 ATTTTAAGTTGAA-TTTTTTACA-TTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTGA-G
** ** * * * *
1089877 AAATATGAAGTGAAAGCCATCCATTGACACA-AGAAGTTCC-TTCATAGTCACTCATCCCTTCAA
63 AAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAG-TCCATTTATAGTCACTCATGCCTTCGA
* * * * *
1089940 AAGCCTTATTACTCACCTTAAACGATTTTATAA-CATTATAAATT-
126 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATC-TCAT-AATTG
* ** * * * * * * * *
1089984 ATTTTAAGTTTAATTTTTTTTA-GTAGTCATAAAAGTAGCTGATATTTGGATGTTTGCCTTGAGA
1 ATTTTAAGTTGAATTTTTTACATTTTG-CTTAAAA-CAGATTATAATTGAATGTTTGCCTTGAGA
* * * * ** * * *
1090048 AATGTGATGCGAATGCCATCTGTTAACAAGAAAAGTCCATTTACAGTCAATCATGCCTTCGAAAG
64 AACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAG
* * *
1090113 CCCTATTACTCGCTTTAAATGGTTTTATAAAT-TCACAATTT
129 CCTTATTACTCGCTTTAAATGGTTTTAT-AATCTCATAATTG
* * * * * * * * *
1090154 ATTTTAAAG-TGAATTTTTTTCTTTTTTTCTCAACACAGATTACATTTGAATGTCTGTCC-TAAG
1 ATTTT-AAGTTGAATTTTTTAC-ATTTTGCTTAAAACAGATTATAATTGAATGTTTG-CCTTGAG
* * *
1090217 -AACGTGAAGCAAAAGCCATGCATTGACCAGAAAAG-CTC-TCTTATAGTCTCTTACA-G-CTTC
63 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTC-CAT-TTATAGTCAC-T-CATGCCTTC
* * *
1090277 GAAAGCCTTATTACTCGGTTTTAATGGTTTTATAATTTCATAATTG
124 GAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
* * * * *
1090323 ATTTTAAGTTGAATTATTTTTACATTTTTGGTAAAAATAGATTATAATTGAATGTTTACC-TAAG
1 ATTTTAAGTTGAA-T-TTTTTACA-TTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTGA-
* * * * * *
1090387 GAAACATGAAGCAAAAGCCATCCTTTGGCACGAAAAG-CGCATTTGTAGTCACTCATGCTTTCGA
62 GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGA
*** * *
1090451 AAATATTATTACTCGCTTTAAATAGTTTTATAATATCATAATTG
126 AAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
* * *
1090495 ATTTTAAGTTGAATGTTTTTACATTTTAGGC--AACAATAGATTATAATTGAATGTTTTCCAT-A
1 ATTTTAAGTTGAAT-TTTTTACATTTT--GCTTAA-AACAGATTATAATTGAATGTTTGCCTTGA
* * * * *
1090557 GGAAACATGAAGTAAAAGCAATCCATTGACACA-TAAAGTCCATTTGTAGTCACTCATGCCTTCG
62 -GAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * *
1090621 AAAGCATTATTACTCG-TTTGAAATGATTTTATGATCTCATAATTG
125 AAAGCCTTATTACTCGCTTT-AAATGGTTTTATAATCTCATAATTG
* * ** * * *
1090666 ATTTTAAGTTGAATTTTTTTAGATCTT-CAGTTAAAACAGATTGCATTTGCATGTTTGCCTTAAG
1 ATTTTAAGTTGAA-TTTTTTACATTTTGC--TTAAAACAGATTATAATTGAATGTTTGCCTTGAG
* * *
1090730 AAACATGAAGTATAAGCCATCCATTGACAAGAAATA-TCCATTTA
63 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAA-AGTCCATTTA
1090774 CTTTAAACGG
Statistics
Matches: 1328, Mismatches: 241, Indels: 147
0.77 0.14 0.09
Matches are distributed among these distances:
168 13 0.01
169 112 0.08
170 439 0.33
171 645 0.49
172 118 0.09
173 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (169 bp):
ATTTTAAGTTGAATTTTTTACATTTTGCTTAAAACAGATTATAATTGAATGTTTGCCTTGAGAAA
CGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC
TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTG
Found at i:1089593 original size:341 final size:337
Alignment explanation
Indices: 1088991--1090773 Score: 1520
Period size: 341 Copynumber: 5.2 Consensus size: 337
1088981 TAGTTTTCAT
* * * * * **
1088991 TAAAATAGATGATAATTTG-ATGTTTGCCTCAAGAAAGGTGAAGCGAATGCCATCCACCAAG-AA
1 TAAAATAGATTATAATTTGAATGTTTGCCT-AGGAAACGTGAAGCAAAAGCCATCCA-TTAGCAA
* * * * *
1089054 GAAAAGTTCATTTATAGTCAATCATAGCTTCGAAAGCCCTATTACTCACTTTAACTGATTTTATA
64 GAAAAGTCCATTTATAGTCAATCAT-GCTTTGAAAGCCCTATTACTCGCTTTAAATGGTTTTATA
* * * ** * * *
1089119 AATTCGTAATTGATTTTAAGTCGACTTTTTTCACTATTTTGCTTAAAACAGAGTAAAATTGAATG
128 AATTCATAATTGATTTTAAGTTGAATTTTTT-AC-ATTTTTATCAAAACAGATTATAATTGAATG
** * * * * *
1089184 TTTGCCTTGAGAAATGTGAAGCAAAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCATTCA
191 TTTGCC-TGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAATCCATTTATAGTCACTCA
* * *
1089249 TGCCTTCGAAAGTATTATTACTCGCTTTACATGGTTTTATAATCTCATAATTGATTTTAAGTTGA
255 TGCCTTCGAAAGCATTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGA
**
1089314 ATTTTTTACATACATGGC
320 ATTTTTTACATATTTGGC
* *
1089332 TAAAACAGATTATAATTTGAATGTTTGCCTAGGGAACGTGAAGCAAAAGCCATCCATTAGCAAGA
1 TAAAATAGATTATAATTTGAATGTTTGCCTAGGAAACGTGAAGCAAAAGCCATCCATTAGCAAGA
* * * *
1089397 AAAGTCCATTTATAGTGAATCATGCCTTTGAAAGCTCGATTACTCGCTTTATATGGTTTTATAAA
66 AAAGTCCATTTATAGTCAATCATG-CTTTGAAAGCCCTATTACTCGCTTTAAATGGTTTTATAAA
* * * *
1089462 TTCATAATTGATTTTAAGTTAAATTTGTTTCCATTGTTTATCAAAACTGATTATACTTGAATGTT
130 TTCATAATTGATTTTAAGTTGAATTT-TTTACATT-TTTATCAAAACAGATTATAATTGAATGTT
* *
1089527 TGCCTTGAGAAACATGAAGCAAAAGCCATCCATTGGCAAGAAAAATCCATTTATATTCACTCATG
193 TGCC-TGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAATCCATTTATAGTCACTCATG
* * * * *
1089592 CCTTCGAAAGCAGTACTACTCGTTTTAAATGATTTTATAATATCACAATTGATTTTAAGCTT-AA
257 CCTTCGAAAGCATTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAG-TTGAA
* * *
1089656 TTTTTTACATTTTTAGA
321 TTTTTTACATATTTGGC
* * * *
1089673 TAAAACATATTAT-ATTTGAATGTTTGCCTTAAGAAATGTGAAGCAAAAGCCATCCATT-GACAA
1 TAAAATAGATTATAATTTGAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTAG-CAA
* * * * *
1089736 AAAAAGTCCATCTATAGTCACTCATGCTTTTATAAGCCTTATTACTCGCTTTAAATGGTTTTAT-
64 GAAAAGTCCATTTATAGTCAATCATGCTTTGA-AAGCCCTATTACTCGCTTTAAATGGTTTTATA
* * * *
1089800 AATCTCATAATTAATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACACATTATAATTGAAT
128 AAT-TCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTT-ATCAAAACAGATTATAATTGAAT
* * * ** ** *
1089865 GTTTACCTCAGGAAATATGAAGTGAAAGCCATCCATTGACACA-AGAAGTTCC-TTCATAGTCAC
190 GTTTGCCTGA-GAAACATGAAGCAAAAGCCATCCATTGACA-AGA-AAAATCCATTTATAGTCAC
* * * * * * *
1089928 TCATCCCTTCAAAAGCCTTATTACTCACCTTAAACGATTTTATAA-CATTATAAATT-ATTTTAA
252 TCATGCCTTCGAAAGCATTATTACTCGCTTTAAATGATTTTATAATC-TCAT-AATTGATTTTAA
* * * * *
1089991 GTTTAATTTTTT--TTAGTAGTC
315 GTTGAATTTTTTACATATTTGGC
* * * * * * * * ** *
1090012 ATAAAAGTAGCTGAT-ATTTGGATGTTTGCCTTGAGAAATGTGATGCGAATGCCATCTGTTAACA
1 -TAAAA-TAGATTATAATTTGAATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTAGCA
* *
1090076 AGAAAAGTCCATTTACAGTCAATCATGCCTTCGAAAGCCCTATTACTCGCTTTAAATGGTTTTAT
63 AGAAAAGTCCATTTATAGTCAATCATG-CTTTGAAAGCCCTATTACTCGCTTTAAATGGTTTTAT
* * * * * * * *
1090141 AAATTCACAATTTATTTTAAAG-TGAATTTTTTTCTTTTTTTCTCAACACAGATTACATTTGAAT
127 AAATTCATAATTGATTTT-AAGTTGAATTTTTTAC-ATTTTTATCAAAACAGATTATAATTGAAT
* * * * * * *
1090205 GTCTGTCCTAAG-AACGTGAAGCAAAAGCCATGCATTGACCAG-AAAAGCTC-TCTTATAGTCTC
190 GTTTG-CCTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAATC-CAT-TTATAGTCAC
* * * * *
1090267 TTACA-G-CTTCGAAAGCCTTATTACTCGGTTTTAATGGTTTTATAATTTCATAATTGATTTTAA
252 -T-CATGCCTTCGAAAGCATTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAA
*
1090330 GTTGAATTATTTTTACATTTTTGG-
315 GTTGAA-T-TTTTTACATATTTGGC
* * * * *
1090354 TAAAAATAGATTATAA-TTGAATGTTTACCTAAGGAAACATGAAGCAAAAGCCATCCTTTGGCAC
1 T-AAAATAGATTATAATTTGAATGTTTGCCT-AGGAAACGTGAAGCAAAAGCCATCCATTAGCAA
* * **** *
1090418 GAAAAG-CGCATTTGTAGTCACTCATGCTTTCGAAAATATTATTACTCGCTTTAAATAGTTTTAT
64 GAAAAGTC-CATTTATAGTCAATCATGCTTT-GAAAGCCCTATTACTCGCTTTAAATGGTTTTAT
* *
1090482 -AATATCATAATTGATTTTAAGTTGAATGTTTTTACA-TTTTAGGCAACAATAGATTATAATTGA
127 AAAT-TCATAATTGATTTTAAGTTGAAT-TTTTTACATTTTTA-TCAA-AACAGATTATAATTGA
* * * * * *
1090545 ATGTTTTCCAT-AGGAAACATGAAGTAAAAGCAATCCATTGACACA-TAAAGTCCATTTGTAGTC
188 ATGTTTGCC-TGA-GAAACATGAAGCAAAAGCCATCCATTGACA-AGAAAAATCCATTTATAGTC
*
1090608 ACTCATGCCTTCGAAAGCATTATTACTCG-TTTGAAATGATTTTATGATCTCATAATTGATTTTA
250 ACTCATGCCTTCGAAAGCATTATTACTCGCTTT-AAATGATTTTATAATCTCATAATTGATTTTA
* * ** *
1090672 AGTTGAATTTTTTTAGATCTTCAGT
314 AGTTGAA-TTTTTTACATATTTGGC
* ** * * * * *
1090697 TAAAACAGATT-GCATTTGCATGTTTGCCTTAAGAAACATGAAGTATAAGCCATCCATT-GACAA
1 TAAAATAGATTATAATTTGAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTAG-CAA
1090760 GAAATA-TCCATTTA
64 GAAA-AGTCCATTTA
1090774 CTTTAAACGG
Statistics
Matches: 1152, Mismatches: 227, Indels: 125
0.77 0.15 0.08
Matches are distributed among these distances:
337 3 0.00
338 7 0.01
339 79 0.07
340 87 0.08
341 735 0.64
342 140 0.12
343 95 0.08
344 6 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (337 bp):
TAAAATAGATTATAATTTGAATGTTTGCCTAGGAAACGTGAAGCAAAAGCCATCCATTAGCAAGA
AAAGTCCATTTATAGTCAATCATGCTTTGAAAGCCCTATTACTCGCTTTAAATGGTTTTATAAAT
TCATAATTGATTTTAAGTTGAATTTTTTACATTTTTATCAAAACAGATTATAATTGAATGTTTGC
CTGAGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAATCCATTTATAGTCACTCATGCCTT
CGAAAGCATTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT
TACATATTTGGC
Found at i:1090651 original size:682 final size:676
Alignment explanation
Indices: 1089226--1091336 Score: 1686
Period size: 682 Copynumber: 3.1 Consensus size: 676
1089216 CATTGATAAG
* * * * *
1089226 AAAAGTCTATTTATAGTCATTCATGCCTTCGAAAGTATTATTACTCGCTTTACATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATTATTACTCG-TTTAAATGATTTTATAA
* *
1089291 TCTCATAATTGATTTTAAGTTGAATTTTTTACATACATGGCTAAAACAGATTATAATTTGAATGT
65 -CTCATAATTGATTTTAAGTTGAATTTTTT--TTACATGGCTAAAACAGATGATAATTTGAATGT
* * * *
1089356 TTGCCTAGGGAACGTGAAGCAAAAGCCATCCATTAGCAAGAAAAGTCCATTTATAGTGAATCATG
127 TTGCCTAGGAAACGTGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTACAGTCAATCATG
* * * *
1089421 CCTTTGAAAGCTCGATTACTCGCTTTATATGGTTTTATAAATTCATAATTGATTTTAAGTTAAAT
192 CCTTCGAAAGCCCGATTACTCGCTTTAAATGGTTTTATAAATTCACAATTGATTTTAAGTTAAAT
* * * *
1089486 TTGTTTCCATTGTTTATCAAAACTGATTATACTTGAATGTTTGCCTTGAGAAACATGAAGCAAAA
257 TTGTTTCCATTGTTTATCAAAACAGATTACACTTGAATGTCTGCCTTAAGAAACATGAAGCAAAA
* *
1089551 GCCATCCATTGGCAAGAAAAATCCATTTATATTCACTCATGCCTTCGAAAGCAGTACTACTCGTT
322 GCCATCCATTGACAAGAAAAATCCA-TTATAGTCACTCATGCCTTCGAAAGCAGTACTACTCGTT
1089616 TTAAATGATTTTATAATATCACAATTGATTTTAAGCTTAATTTTTTACATTTTTAGATAAAACAT
386 TTAAATGATTTTATAATATCACAATTGATTTTAAGCTTAATTTTTTACATTTTTAGATAAAACAT
* * **
1089681 ATTATATTTGAATGTTTGCCTTAAGAAATGTGAAGCAAAAGCCATCCATTGACAAAAAAAGTCCA
451 ATTATAATTGAATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCCATTGACAAAAAAAGTCCA
* * * * *
1089746 TCTATAGTCACTCATGCTTTTATAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAAT
516 TCTATAGTCACTCATGCTTTGATAAACATTATTACTCGCTTTAAATAGTTTTATAATATCATAAT
* * *
1089811 TAATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACACATTATAATTGAATGTTTACCTCAG
581 TAATTTTAAGTTGAATGTTTTTACATTTTAGGTCAAAACACATTATAATTGAATGTTTACCTCAG
* * *
1089876 GAAATATGAAGTGAAAGCCATCCATTGACAC
646 GAAACATGAAGTAAAAGCAATCCATTGACAC
* * * * ** *
1089907 AAGAAGTTCC-TTCATAGTCACTCATCCCTTCAAAAGCCTTATTACTCACCTTAAACGATTTTAT
1 AA-AAG-TCCATTTATAGTCACTCATGCCTTCGAAAGCATTATTACTC-GTTTAAATGATTTTAT
* * * * * * *
1089971 AACATTATAAATT-ATTTTAAGTTTAATTTTTTTTA-GTAGTCATAAAAGTAGCTGAT-ATTTGG
63 AAC-TCAT-AATTGATTTTAAGTTGAATTTTTTTTACAT-GGC-TAAAA-CAGATGATAATTTGA
* * * * * **
1090033 ATGTTTGCCTTGAGAAATGTGATGCGAATGCCATCTGTTAACAAGAAAAGTCCATTTACAGTCAA
123 ATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTACAGTCAA
* *
1090098 TCATGCCTTCGAAAGCCCTATTACTCGCTTTAAATGGTTTTATAAATTCACAATTTATTTTAAAG
187 TCATGCCTTCGAAAGCCCGATTACTCGCTTTAAATGGTTTTATAAATTCACAATTGATTTT-AAG
* * * * * * * *
1090163 -TGAATTT-TTTTCTTTTTTTCTCAACACAGATTACATTTGAATGTCTGTCC-TAAG-AACGTGA
251 TTAAATTTGTTTCCATTGTTTATCAAAACAGATTACACTTGAATGTCTG-CCTTAAGAAACATGA
* * * * **
1090224 AGCAAAAGCCATGCATTGACCAGAAAAGCTCTC-TTATAGTCTCTTACA-G-CTTCGAAAGCCTT
315 AGCAAAAGCCATCCATTGACAAGAAAA-ATC-CATTATAGTCAC-T-CATGCCTTCGAAAGCAGT
* * * *
1090286 ATTACTCGGTTTT-AATGGTTTTATAATTTCATAATTGATTTTAAG-TTGAATTATTTTTACATT
376 ACTACTC-GTTTTAAATGATTTTATAATATCACAATTGATTTTAAGCTT-AA-T-TTTTTACATT
* *
1090349 TTT-GGTAAAA-ATAGATTATAATTGAATGTTTACC-TAAGGAAACATGAAGCAAAAGCCATCCT
437 TTTAGATAAAACAT--ATTATAATTGAATGTTTACCTTAA-GAAACATGAAGCAAAAGCCATCCA
* ** * * *
1090411 TTGGCACGAAAAG-CGCATTTGTAGTCACTCATGCTTTCGA-AAATATTATTACTCGCTTTAAAT
499 TTGACAAAAAAAGTC-CATCTATAGTCACTCATGCTTT-GATAAACATTATTACTCGCTTTAAAT
* * *
1090474 AGTTTTATAATATCATAATTGATTTTAAGTTGAATGTTTTTACATTTTAGG-CAACAATAGATTA
562 AGTTTTATAATATCATAATTAATTTTAAGTTGAATGTTTTTACATTTTAGGTCAA-AACACATTA
*
1090538 TAATTGAATGTTTTCCAT-AGGAAACATGAAGTAAAAGCAATCCATTGACAC
626 TAATTGAATGTTTACC-TCAGGAAACATGAAGTAAAAGCAATCCATTGACAC
*
1090589 ATAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCATTATTACTCGTTTGAAATGATTTTATG
1 A-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATTATTACTCGTTT-AAATGATTTTAT-
* * * * * * *
1090654 ATCTCATAATTGATTTTAAGTTGAATTTTTTTAGATCTTCAGTTAAAACAGAT--TGCATTTGCA
63 AACTCATAATTGATTTTAAGTTGAATTTTTTT-TA-CAT-GGCTAAAACAGATGAT-AATTTGAA
* * * * *
1090717 TGTTTGCCTTAAGAAACATGAAGTATAAGCCATCCATTGACAAGAAATA-TCCA-TT----T--A
124 TGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTAACAAGAAA-AGTCCATTTACAGTCAA
* * *
1090774 -C-T---TT--AAA---CGGTT--T---TAT-AA---TCTTATAAA-T-----TT--TTTTAAGT
187 TCATGCCTTCGAAAGCCCGATTACTCGCTTTAAATGGTTTTATAAATTCACAATTGATTTTAAGT
* * * * * * * * * * * *
1090812 TGAATTTTTTTCAATT-TTTGTTAAAATAGATTATAATTGGATATCTTCCTT-AGAAACGTGAAG
252 TAAATTTGTTTCCATTGTTTATCAAAACAGATTACACTTGAATGTCTGCCTTAAGAAACATGAAG
* * * * * * * ** *
1090875 CGAATGGCAT-TAGTTGAC-TGAAAAAGTCTATTTATAGTCAATCATGCCTTCGAAAGCCCTATT
317 CAAAAGCCATCCA-TTGACAAGAAAAA-TCCA-TTATAGTCACTCATGCCTTCGAAAGCAGTACT
** * *
1090938 ACTCACTTTAAATAATTTTATAA-ATTCATAATTGATTTTAAG-TTGAATTTTTTTAC-TATTTT
379 ACTCGTTTTAAATGATTTTATAATA-TCACAATTGATTTTAAGCTT-AA-TTTTTTACAT-TTTT
* * * * * * * * * * *
1091000 GGCTAAAATAAATTATAATTGAATGTCTGCCTTGAGAAACGTGAACCAAAAGCCACCCATTGATA
440 AGATAAAACATATTATAATTGAATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCCATTGACA
* * * * *
1091065 AAAAAGGTCTAT-TCATAGTCACTCATACCTTCA-AAAGCATTATTACTCG-TGTTAAAT-GATT
505 AAAAAAGTCCATCT-ATAGTCACTCATGCTTTGATAAA-CATTATTACTCGCT-TTAAATAG-TT
* * * * * * *
1091126 TTATACTCTCATAATTGATTTTAAGATT-AATTTTTTTCCATTCTT-GGTTAAAACAGATTATAA
566 TTATAATATCATAATTAATTTTAAG-TTGAATGTTTTTACATT-TTAGGTCAAAACACATTATAA
* * * ** * * *
1091189 TTGAATATCTA-CT-AGGGAAACGTGAAGCGAAAGCCATCCATTGGCAAG
629 TTGAATGTTTACCTCA-GGAAACATGAAGTAAAAGCAATCCATTGAC-AC
** * * * *
1091237 AAAAGTTTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTGCTCGGTTTAAAAGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATTATTACTC-GTTTAAATGATTTTATAA
1091302 TCTCATAATTGATTTTAAGTTGAA-TTTTTTTACAT
65 -CTCATAATTGATTTTAAGTTGAATTTTTTTTACAT
1091337 TTTTAGTTGA
Statistics
Matches: 1167, Mismatches: 197, Indels: 169
0.76 0.13 0.11
Matches are distributed among these distances:
644 2 0.00
645 1 0.00
646 9 0.01
647 109 0.09
648 174 0.15
649 132 0.11
650 6 0.01
651 2 0.00
656 1 0.00
657 8 0.01
660 2 0.00
661 2 0.00
664 1 0.00
666 3 0.00
669 3 0.00
671 2 0.00
674 1 0.00
675 1 0.00
676 1 0.00
678 1 0.00
679 3 0.00
680 92 0.08
681 90 0.08
682 452 0.39
683 61 0.05
684 7 0.01
685 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (676 bp):
AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATTATTACTCGTTTAAATGATTTTATAAC
TCATAATTGATTTTAAGTTGAATTTTTTTTACATGGCTAAAACAGATGATAATTTGAATGTTTGC
CTAGGAAACGTGAAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTTACAGTCAATCATGCCTT
CGAAAGCCCGATTACTCGCTTTAAATGGTTTTATAAATTCACAATTGATTTTAAGTTAAATTTGT
TTCCATTGTTTATCAAAACAGATTACACTTGAATGTCTGCCTTAAGAAACATGAAGCAAAAGCCA
TCCATTGACAAGAAAAATCCATTATAGTCACTCATGCCTTCGAAAGCAGTACTACTCGTTTTAAA
TGATTTTATAATATCACAATTGATTTTAAGCTTAATTTTTTACATTTTTAGATAAAACATATTAT
AATTGAATGTTTACCTTAAGAAACATGAAGCAAAAGCCATCCATTGACAAAAAAAGTCCATCTAT
AGTCACTCATGCTTTGATAAACATTATTACTCGCTTTAAATAGTTTTATAATATCATAATTAATT
TTAAGTTGAATGTTTTTACATTTTAGGTCAAAACACATTATAATTGAATGTTTACCTCAGGAAAC
ATGAAGTAAAAGCAATCCATTGACAC
Found at i:1091308 original size:170 final size:167
Alignment explanation
Indices: 1090775--1095914 Score: 1395
Period size: 171 Copynumber: 30.1 Consensus size: 167
1090765 ATCCATTTAC
* * * * * *
1090775 TTTAAACGGTTTTATAATCTTATAAATT-TTTTTAAGTTGAATTTTTTTCAATTTTTGTTAAAAT
1 TTTAAAAGATTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAAT
* * * * *
1090839 AGATTATAATTGGATATCTTCCTTA-GAAACGTGAAGCGAATGGCAT-TAGTTGAC-TGAAAAAG
65 AGATTATAATTGAATATC-TCC-TAGGAAACGTGAAGCGAAAGCCATCCA-TTGACAAG-AAAAG
* * *
1090901 TCTATTTATAGTCAATCATGCCTTCGAAAGCCCTATTACTCAC
126 TCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* *
1090944 TTTAAATA-ATTTTATAAAT-TCATAATTGATTTTAAGTTGAATTTTTTTACTATTTTGGCTAAA
1 TTTAAA-AGATTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTT-CCATTTTGGTTAAA
* * * * * * *
1091007 ATAAATTATAATTGAATGTCTGCCTTGAGAAACGTGAACCAAAAGCCACCCATTGATAA-AAAAG
63 ATAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA-
* * * *
1091071 GTCTATTCATAGTCACTCATACCTTCAAAAGCATTATTACTCG
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* *
1091114 TGTTAAATGATTTTATACTCTCATAATTGATTTTAAGATT-AATTTTTTTCCATTCTTGGTTAAA
1 T-TTAAAAGATTTTATAATCTCATAATTGATTTTAAG-TTGAATTTTTTTCCATT-TTGGTTAAA
* * *
1091178 ACAGATTATAATTGAATATCTACTAGGGAAACGTGAAGCGAAAGCCATCCATTGGCAAGAAAAGT
63 ATAGATTATAATTGAATATCTCCTA-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* *
1091243 TTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTGCTCGG
127 CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * *
1091285 TTTAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAGTT-GAAT
1 TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTGGTTAAAAT
** * ** * * * * ** * ** * *
1091349 -TTTTTTACATT-TTTA-GT--TA-AAACACATTATAATTGAATG-TTTACC-TT---AGGAAAT
65 AGATTATA-ATTGAATATCTCCTAGGAA-AC-GT-GAAGCGAAAGCCAT-CCATTGACAAGAAAA
** * * * * * * * *
1091403 GTGAAGTGAAAGGC-GTCCATTGCC-ACGAGGAGTCCTT-TCATAGTCG
125 GTCTATTTATAGTCACT-CA-TGCCTTCGA-AAG-CCTTAT--TACTCG
* * * * * **
1091449 CTCATCCCTCCGAAAGCCTTATGACTCACCTTAAACAATATTATAACCTT-ATAAATTATTTTAA
1 -T--T---T---AAA-----A-GA-T-T--TT--ATAATCTCATAA--TTGAT--TTTAAGTT--
* * ** * * * * * * * * *
1091513 GTGGAATTTTTTT-TAGTTGTCATTAACATAGCTGATAATTGGATGTTTGCTTTGAGAAATGTGA
39 ---GAATTTTTTTCCA-TTTTGGTTAAAATAGATTATAATTGAATATCT-CCTAG-GAAACGTGA
* * * * * **********
1091577 TGC-AAATTCCATTCGTTGACAAGAAAAGTCTATTTATAGTCAATCATGCCTTCGNNNNNNNNNN
98 AGCGAAA-GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTAT
*
1091641 TACTCAC
162 TACTC-G
* * * * * * *
1091648 TTTAAAGGGTTTTATAAAT-TCATAATTGATTTTAAGTT-AA-ATTTTT---TTTT-CTCAACAC
1 TTTAAAAGATTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAAT
* * * * *
1091706 AGATTATAATTGAATGTCTATCCTCA-GAAACATGAAGCAAAAGCCATTCATTGATAAGAAAAG-
65 AGATTATAATTGAATATC--TCCT-AGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * *
1091769 CTCATTTATAGTCTCTTACGCCTTCGAAAGCCTTATTACTCG
127 CT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * ** * ** *
1091811 ATTTAAATGGTTTTATTATCTCATAATTGATTCTAAGTCAAATATTTTCTATATTTTTGG-CAAA
1 -TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAAT-TTTTTTCCA-TTTTGGTTAAA
* * * * * * * *
1091875 AGCAGATTATAATTGAATGTTTCCCTTAGGAAACGTGAAGCAAAAACCATCCTTTGGCACGAAAA
63 A-TAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA
* * * * * * *
1091940 G-CATATTTGTAGTCAGTCTTACTTTCGAACGCATTATTACTCG
125 GTC-TATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
********** * * * **
1091983 CTTTAAATAG-TTNNNNNNNNNNATAATTGATTTTAAGTTGAATGTTCTTACATTTTAGGCAAAA
1 -TTTAAA-AGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTT-GGTTAAA
* * * * * *
1092047 ATAGATTATAATTGAATGTTTACCACAAGAAACTTGAAGTGAAAGCCATCCATTGACAA-AAAGA
63 ATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA-A
* * * *
1092111 GTCCATTTGTAGTCACTCATGCCTTCGAAAGCATTATTACTCAC
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * * ** * *
1092155 TTGAAATGATTTTATGATCTCATAATTGATTTTAAGTTAAATTTTTTTAGATTTTTTGTTAAAAA
1 TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTGGTTAAAAT
* * * * * * * * *
1092220 AGATTACATTTGAATGTTTTCCTCAAGAAACATGAATCAAAAGCCATCCATTGACATGAAATA-T
65 AGATTATAATTGAAT-ATCTCCT-AGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA-AGT
* * * *
1092284 CCATTTATAGACACTCATACTTTCGAAAGCCTTATTACTTAC-
127 CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC-T-CG
* * ********** * *
1092326 TTTAAACAG-TTTTATAATCTTATAAATT-TTTTTNNNNNNNNNNTTTTTCAATTTTTGTTAAAA
1 TTTAAA-AGATTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAA
* * * * * * * * ** * * *
1092389 TAGATTCTAATTGGATATTTTCCTTAAGAAACATGAAGTGAATGGCATCTGTTGACTACAAAATT
64 TAGATTATAATTGAATA-TCTCC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * * * *
1092454 CTATTTATAATCAATCATACATTCGAAAGTCC-TATTACTCAC
127 CTATTTATAGTCACTCATGCCTTCGAAAG-CCTTATTACTC-G
* * * * *
1092496 TTTAAATGGTTTTATAAAT-TCATAATTGATTTAAAGTTGAACTTTTTTTACTATTTTGATTAAA
1 TTTAAAAGATTTTAT-AATCTCATAATTGATTTTAAGTTGAA-TTTTTTT-CCATTTTGGTTAAA
* * * * * * *
1092560 ACAAATTATAATTGAATGTCTGCCTTGAGAAACGTGAATCAAAAGCCATCTATTGACAAGAAAAG
63 ATAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG
* * * * *
1092625 TCTATTTATACTTACTTATACCTT-GAAAAGCATTATTACTC-
126 TCTATTTATAGTCACTCATGCCTTCG-AAAGCCTTATTACTCG
* * * *********
1092666 TAGTTAAATGCTTTTATACTCTCATAATTGATTTTAAGTTGAATTTNNNNNNNNNNTTGGTTAAA
1 T--TTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTT-TTTTCCATTTTGGTTAAA
* * * *
1092731 ACAGATTATAATTGAATATCTACTAGGGAAACGTGAAGCAAAAGTCATCCATTGGA-AAGAAAAG
63 ATAGATTATAATTGAATATCTCCTA-GGAAACGTGAAGCGAAAGCCATCCATT-GACAAGAAAAG
**********
1092795 TCTATTTATAGTCACNNNNNNNNNNGAAAGCCTTATTACTCG
126 TCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * * * *********
1092837 CTTTAAAA-AGTTTTATAATTTCATGATTGATTTTAAGTTGAATGTTTTTACANNNNNNNNNNAA
1 -TTTAAAAGA-TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTGGTTAAA
* * * * * * * * **
1092901 ACAGATTATAATTGAATGTTTACCTTAGAAAATGTGAAGCGAAAG-TAGTCCATTGGCACGAGGA
63 ATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCA-TCCATTGACAAGAAAA
* * * * *
1092965 GTCCT-TTCATAGTCGCTCATCCCTCCGAAAGCCTTATTACTCAC
125 GT-CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * * * ** *
1093009 TTTAAACGATATTATAACCTTATAAATT-ATTTT-AGATTGAATTTTTTT-TAGTTTTCATTAAC
1 TTTAAAAGATTTTATAATCTCAT-AATTGATTTTAAG-TTGAATTTTTTTCCA-TTTTGGTTAAA
* * * * * * * * * *
1093071 ATAGCTGATAATTGGATGTTTGCCTTGAGAAATGTGATGCGAATGCCATCCGTTGACAAGAAAAG
63 ATAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG
* * *********
1093136 TCCATTTATAGTCAATCATGCCTTCGAAAGCCCTNNNNNNNNN
126 TCTATTTATAGTCACTCATGCCTTCGAAAG-CCTTATTACTCG
* * * * * * ** *
1093179 NTTAAAGGGTTTTATAAAT-TCATAATTGATTTTCAGTTGATTTTTTTTTC-TTTTTTTCTCAAC
1 TTTAAAAGATTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTGGT-T-AAA
* * * * *
1093242 ACAGATTATAATTGAATGTCTGCCCTGAGG-AACATGAAGCAAAAGCCATGCATTGACAAGAAAA
63 ATAGATTATAATTGAATATCT--CCT-AGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA
* * * *
1093306 G-CTCATTTATAGTCTCTTATGCGTTCAAAAGCCTTATTACTCGG
125 GTCT-ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * ********** * ** **
1093350 TTTAAATGGTTTTANNNNNNNNNNATTAATTTTAAGTTGAATTGTTTTTATATTTTTGGCAAAAA
1 TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTCCA-TTTTGGTTAAAA
* * * ** * * * * * ** *
1093415 CAAATTAGAATCAAATGTTTGCCTTAGGAAACATAAAGCAAAAGCCATCTTTTGGCACA-AAAAG
64 TAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACA-AGAAAAG
* * **
1093479 TGC-ATTTGTAGTCACTCATGCTTTCGAAAGTATTATTACTCG
126 T-CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * ** ** *
1093521 CTTTAAATAG-TTTTATAATATCATAATTAATTTTAAGTTGAATGGTTTTATATTTTCGGTAAAA
1 -TTTAAA-AGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTT-GGTTAAA
* * * * * * * *
1093585 ATAGATTATAATTGAATGTTTACCATAGAAAACGTGAAGTGAAAGCTAACCATTGATACA-AAGA
63 ATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACA-AGAAAA
* * * * * *
1093649 GTCCATTTGTAGTCACTCATGTCTTCAAAAGCATTATTACTTG
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * ********** * ** *
1093692 CTTGAAATGATTTTNNNNNNNNNNAATTGATTTTAAGTT-AAATTTTTTAGATTTTTAGTTAAAA
1 -TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTGGTTAAAA
* * * * * * * * * *
1093756 CAAATTACATTTGAATATTTGCCTCATGAAATGTGAAACAAAAGCCATCCATTGACACGAAATA-
64 TAGATTATAATTGAATATCT-CCT-AGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAA-AG
*
1093820 TCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTTAC-
126 TCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC-T-CG
********** * * * * *
1093863 TTTAANNNNNNNNNNAATCTTATAAATT-TTTTTAAGTTAAATTTTTTTCAATTTTTGTTAAAAT
1 TTTAAAAGATTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAAT
* * * * * * * * * *
1093927 AGGTTATAATTGGATATTTTCCTTAAGG-AAGGTGAAGTGAATGGCATCTATTGACTACAAAAGT
65 AGATTATAATTGAATA-TCTCC-T-AGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * ** * * * *
1093991 TTATTTATAGTCAATCATATCTTCGATAGCCCTATTATTCAC
127 CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * ** **
1094033 TTTAAATAG-TTGTATAAAT-TCATAATTGATTTAAAGTTGAATTTTTTTGTTATTTTCATTAAA
1 TTTAAA-AGATTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTT-CCATTTTGGTTAAA
* * * * * *
1094096 ACAAATTATAATTGAAGT-T-TACCTTGAGAAACGTGAACCAAAAGCCACCCATTGACAAGAAAA
63 ATAGATTATAATTGAA-TATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA
* * * ***
1094159 GTCTATTTATAGTTACTCATACCTTCAAAAATATTATTACTTGCG
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTAC-T-CG
* * * ********** *
1094204 -TTAAGAGGTTTTATACTCTCATAATTGATTTTAAGTTGAANNNNNNNNNNTTCTTAGTTAAAAT
1 TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATT-TTGGTTAAAAT
* * * * ** **
1094268 AGATTATAATGGAATGTCTACTAGGGAAACATGAAGTAAAAGCCATCCATTGGTAAGAAAAGTCT
65 AGATTATAATTGAATATCTCCTA-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCT
* * * *
1094333 ATTTATAGTCACTCCTACTTTCGAAAGCCTTATTACTTG
129 ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
********** * *
1094372 CTTTAAATAG-TTNNNNNNNNNNATAATTGATTTTAAGTTTAATTGTTTTTACATTTGTGGTTAA
1 -TTTAAA-AGATTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTCCATTT-TGGTTAA
* * * * * * * * * * *
1094436 AACAAATTAGAATTGAATGTTTACCGCAAGAAATGTGAAGCGAAAGCTATCCATTGACATGAGAA
62 AATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA
* * * * *
1094501 GTAC-CTTCATAGTCGCTCATCCCTTCGAAAGCCTTATTACTCAC
125 GT-CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * **
1094545 TTTAAACGATTTTATAACCTTACA-AATT-ATTTTAAGTTGAAATTTTTTT--AGTTGTCATTAA
1 TTTAAAAGATTTTATAATC-T-CATAATTGATTTTAAGTTG-AATTTTTTTCCA-TTTTGGTTAA
* ** * * * * * * * * *
1094606 AGTACCTGATAATTGGATGTTTGCCTTGAGAAATGTGATGCGAATGCCATCCATTAACAAGAAAA
62 AATAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA
* * *
1094671 GTCCATTTATAGTCAATCATGCCTTTGAAAGCC-TATTACTCG
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * *
1094713 CTTTAAAGGGTTTTATATAT-TCATAATTGATTTTAAGTTGAA---TTTT---TTTT-CTTAAAA
1 -TTTAAAAGATTTTATA-ATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAA
* * * * *
1094770 TAGATTATAATTGAATGTCTGCCTTGAGAAATGTGAAGCAAAAGCCATGCATTGACAAGAAAAG-
64 TAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * * *
1094834 CTCATTTGTAGTCTCTTATGCCTTCGACAA-CCTTATTACTTGG
127 CT-ATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTAC-TCG
* * * **
1094877 TTTAAATA-ATTTTATTATCTCATGATTGATTTTAA-TTGAATTTTTTTTACATTTTTGGAAAAA
1 TTTAAA-AGATTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTCCA-TTTTGGTTAAA
* * * * * * * * **
1094940 ACAGATTAAAATCGAATGTTTGCCTTAGGAAACGTGAAGCAAAAGCCATCCTTTGGCACTAAAAG
63 ATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAG
* * **
1095005 TGTATTTATAGTCACTCATTG-TTTCGAAAGTATTATTACTCG
126 TCTATTTATAGTCACTCA-TGCCTTCGAAAGCCTTATTACTCG
********** * * * **
1095047 CTTTAAATAG-TTNNNNNNNNNNATAATTGATTTTAAGTTGAATGTTTTTACGTTTTAGGCAAAA
1 -TTTAAA-AGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTT-GGTTAAA
* * * * *
1095111 ATAGATTATAATTGAATGTTTACCAAAGGAAACGTGAAGCAAAATCCATCCATT-AGCAAGAAAA
63 ATAGATTATAATTGAATATCT-CC-TAGGAAACGTGAAGCGAAAGCCATCCATTGA-CAAGAAAA
* *
1095175 GTCTATTTATAGTCACTCTTGCCTTCGAAAGCCTTATTACTTG
125 GTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
********** * **
1095218 CTTTAAANNNNNNNNNNATCTCATAATTGATTTTAAGTTGCATTTTTTAACATTTTTGGTTAAAA
1 -TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCA-TTTTGGTTAAAA
* * * * * * * * * * *
1095283 CATATTACATTTAAATGTTTGCCTCAAGAAACATGAAGCAAAAGCCATCCATTGACATAG-AATG
64 TAGATTATAATTGAATATCT-CCT-AGGAAACGTGAAGCGAAAGCCATCCATTGACA-AGAAAAG
* * ** * * *
1095347 TCCATTTATAGTCACTTATGCCTTTAAAAGCTTTGTTACTCAC
126 TCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * * * * **
1095390 TTTGAACGATTTTTTAATCTTATAAATT-TTTTTAAGTTGAATTTTTTTCAATTTTCATTAAAAT
1 TTTAAAAGATTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAAT
* * * * * * * ** *
1095454 AGGTGATAATTGGATGTTTTCCTTAAGAGACGTGAAGCGAATGGAGCGAATGGCATCTGTTGACT
65 AGATTATAATTGAAT-ATCTCC-TAGGAAACGTGAAGCGAA---AGC------CATCCATTGACA
* *
1095519 AGAAAAGTCCATTTATAGTCA-TCATGCCTTCGAAAGCCTTATTACTCAC
119 AGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
* * * * * *
1095568 TTTAAATGGTTTTATAAAT-TCATAATAGATTTTAAGTTGAATTTTTTGGCTATTTTAGTTAAAA
1 TTTAAAAGATTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTT-TCCATTTTGGTTAAAA
* * * * * * * *
1095632 -AAATTATAATTGAATGTCTATCTTGACAAACGTGAAGCAAAAGCCACCCAGTGACAAGAAAAGT
64 TAGATTATAATTGAATATCT-CCTAG-GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * * *
1095696 CCATTTATAGTCACTCATACCTTCAAAAGCATTATTACTC-
127 CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
* * *
1095736 TCGTTAAATGATTTTATACTCTCATAATTGATTTTAAGTTGAA-TTTTTTACATTCTTGGTTAAA
1 T--TTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATT-TTGGTTAAA
* * * * * * * *
1095800 A-CG-----GATTGAATGTCTACTAGGGAAATGTGAAGCAAAAGCCATCTATTGTCAAGAAAAGT
63 ATAGATTATAATTGAATATCTCCTA-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGT
* * * *
1095859 CTATTTGTAGTTACTCATGCCTTGGAAAGCCTTATTACTCAC
127 CTATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-G
*
1095901 TTTAAATGATTTTA
1 TTTAAAAGATTTTA
1095915 AGTTGAATTT
Statistics
Matches: 3622, Mismatches: 1063, Indels: 578
0.69 0.20 0.11
Matches are distributed among these distances:
161 2 0.00
162 105 0.03
163 131 0.04
164 122 0.03
165 25 0.01
166 13 0.00
167 8 0.00
168 30 0.01
169 160 0.04
170 1095 0.30
171 1177 0.32
172 480 0.13
173 22 0.01
174 6 0.00
175 8 0.00
176 2 0.00
177 8 0.00
178 88 0.02
179 45 0.01
180 3 0.00
183 3 0.00
184 1 0.00
185 9 0.00
186 2 0.00
187 2 0.00
188 5 0.00
190 3 0.00
192 6 0.00
193 16 0.00
194 4 0.00
195 1 0.00
196 3 0.00
197 2 0.00
198 10 0.00
199 1 0.00
200 6 0.00
201 17 0.00
202 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.37
Consensus pattern (167 bp):
TTTAAAAGATTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTCCATTTTGGTTAAAATA
GATTATAATTGAATATCTCCTAGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTAT
TTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCG
Found at i:1091344 original size:22 final size:22
Alignment explanation
Indices: 1091313--1091366 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
1091303 CTCATAATTG
*
1091313 ATTTTAAGTTGAATTTTTTTAC
1 ATTTTTAGTTGAATTTTTTTAC
1091335 ATTTTTAGTTGAATTTTTTTAC
1 ATTTTTAGTTGAATTTTTTTAC
1091357 ATTTTTAGTT
1 ATTTTTAGTT
1091367 AAAACACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.24, C:0.04, G:0.09, T:0.63
Consensus pattern (22 bp):
ATTTTTAGTTGAATTTTTTTAC
Found at i:1097066 original size:170 final size:173
Alignment explanation
Indices: 1096804--1097220 Score: 414
Period size: 170 Copynumber: 2.4 Consensus size: 173
1096794 CTTAGAGAAT
* * * * * * * * *
1096804 GTGAAGC-AACAGCTATCCATTGATAGGAAAAGTCAATTTATAGTCACTCATGTCTTCAAAAGCA
1 GTGAAGCGAA-AGCCATACATTGACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCC
* * *
1096868 TTATTGCTCTCTTGAAATGGTTTTATAATCTTATA-ATTGATTTTAAG-TCAA-ATGCTTTTACA
65 TTATTACTCACTTGAAATGGTTTTATAATCTGATAGA-TGATTTTAAGTTCAATATGCTTTTACA
* *
1096930 TTTTTG-ATTAAAACATATTACAATTGAATGTTTTCCTCAAGAAAC
129 -TTTTGCATAAAAACATATTACAATTGAATGTTTGCCTCAAGAAAC
* * *
1096975 GT-AAGCGCAAGCCATACATTGACACGAAAAGTCCATTTGTAGTCACTTATACCTTCGAAAGCCT
1 GTGAAGCGAAAGCCATACATTGACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCCT
** * * * *
1097039 TATTACTCACTTTCAATTGTTTTATAATCTGATAGATGATTTTAAGTTGAATTTGTTTTTACATT
66 TATTACTCACTTGAAATGGTTTTATAATCTGATAGATGATTTTAAGTTCAATATGCTTTTACATT
* * **********
1097104 TTGCGTAAAAACATATTATAATTGAATGTTTGCNNNNNNNNNN
131 TTGCATAAAAACATATTACAATTGAATGTTTGCCTCAAGAAAC
* * * *
1097147 GTGAAGCGAAAGCCATCCATTGACACAAAAAGTCCATTTGTAGTCACTCATGCATTTGAAAGCCT
1 GTGAAGCGAAAGCCATACATTGACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCCT
1097212 TATTACTCA
66 TATTACTCA
1097221 TACCTTTGAA
Statistics
Matches: 198, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
170 86 0.43
171 12 0.06
172 36 0.18
173 64 0.32
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.35
Consensus pattern (173 bp):
GTGAAGCGAAAGCCATACATTGACACGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGCCT
TATTACTCACTTGAAATGGTTTTATAATCTGATAGATGATTTTAAGTTCAATATGCTTTTACATT
TTGCATAAAAACATATTACAATTGAATGTTTGCCTCAAGAAAC
Found at i:1097295 original size:86 final size:86
Alignment explanation
Indices: 1097147--1097305 Score: 223
Period size: 86 Copynumber: 1.8 Consensus size: 86
1097137 NNNNNNNNNN
* * **
1097147 GTGAAGCGAAAGCCATCCATTGACACAAAAAGTCCATTTGTAGTCACTCATGCATTTGAAAGCCT
1 GTGAAGCGAAAGCCATCCATTAACACAAAAAGTCCATTTGTAGTCAATCATGCATTCAAAAGCCT
1097212 TATTACTCATACCTTTGAAAT
66 TATTACTCATACCTTTGAAAT
* * *
1097233 GTGAAGTGAAAGCCATCCATTAACA-AGAAAAGTCCATTTTTGGTCAATCATGGC-TTCAAAAGC
1 GTGAAGCGAAAGCCATCCATTAACACA-AAAAGTCCATTTGTAGTCAATCAT-GCATTCAAAAGC
1097296 CTTATTACTC
64 CTTATTACTC
1097306 GCTNNNNNNN
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
85 1 0.02
86 61 0.95
87 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (86 bp):
GTGAAGCGAAAGCCATCCATTAACACAAAAAGTCCATTTGTAGTCAATCATGCATTCAAAAGCCT
TATTACTCATACCTTTGAAAT
Found at i:1097800 original size:171 final size:169
Alignment explanation
Indices: 1097241--1102557 Score: 2767
Period size: 171 Copynumber: 31.2 Consensus size: 169
1097231 ATGTGAAGTG
* * * * * *
1097241 AAAGCCATCCATTAACAAGAAAAGTCCATTTTTGGTCAATCATGGCTTCAAAAGCCTTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* ********** * * *
1097306 GCTNNNNNNNNNNTTATAAAT-TCATAATTGATTTTAAATTGAATTTTCTTACTATTTTGAGTAA
66 GATTTAAATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTAAT-TTTTG-GTAA
* * * *
1097370 AACAGATTGTAATTGAATGTTTG-CTCTAAGAAACGTG-AGACA
128 AATAGATTATAATTGAATGTTTGCCT-TAGGAAACATGAAG-CA
* * * * * * * *
1097412 AAAGCGAACCATAGATAAAAAAAAATCCATTTATAGTCACTCATGCCTTCGACAGCATTATTACT
1 AAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * *
1097477 C-ACTTTTAATAGTTTCATAAT-TACATAATTGATTTTAAGTT-TATTTTTTTATATTTTTAGTT
65 CGA-TTTAAATAGTTTTATAATCT-CATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTT-GGT
* * * *
1097539 AAAACAGATTCTAATTGATTATTTGCCTT-GAGAAACATGAAGCA
126 AAAATAGATTATAATTGAATGTTTGCCTTAG-GAAACATGAAGCA
* * ** * * * * *
1097583 AATGCTATGGATTTACAAGAAAAGTTCAGTTATAGTCACTCATGCCTTTGAAAGCTTTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * *
1097648 GATTTAAATAGTTTTATAATGTTAAAATTGATTTTAAGTTGAATTTTTTTAATATTTTGGTAAAC
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAAT-TTTTGGTAAA-
* * *
1097713 AAAGATTATAATTGAATGTTTGCCTTAGGAAATATGAAGCG
129 ATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * *
1097754 AAAGCCATCCATTG-CAACAAAAAGTCTATTTGTAGTCACTCATGCCTTCGAAAACCTTATTGCT
1 AAAGCCATCCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * ***
1097818 C-ACTTTAAATAGTTTTATAATCAT-ATAAATT-ATATTAAGTTGAATTTTGTTCAGTTTTCATT
65 CGA-TTTAAATAGTTTTATAATC-TCAT-AATTGATTTTAAGTTGAATTTT-TTTAATTTTTGGT
* * * * *
1097880 AACATAGATGATAATT-AGATGTTTTCCTTAAGAAACATTAA-C-
126 AAAATAGATTATAATTGA-ATGTTTGCCTTAGGAAACATGAAGCA
* * * * * * *
1097922 CAAGCCATCCATTGACAAGAAAAGTTCATTCACAGTCAATCATGGCTACGAAAGCCTTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * *
1097987 GCTTTAAATGGTTTTATAAAT-TCATAATTGATTGTAAGTTGAATTTTTTTACTTTTTTTGTCAA
66 GATTTAAATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGGT-AA
* * * * * *
1098051 AACAGATTATAAATGAATATCTGCCCCTA-GAAACATAAAGCA
128 AATAGATTATAATTGAATGTTTG-CCTTAGGAAACATGAAGCA
* * * * * * ** *
1098093 AAAGCTATCCATCGACAAGAAAAGTCTATTTATAGTCATTTATTCCTTCGAAAGTATTATTGCTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * *
1098158 -ACTTTAAA-AGGTTTTGTAATTTCATAATTGATTTTAAGTTGAATTTTTTTACACTCTTAGTTA
66 GA-TTTAAATA-GTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-A-TTTTTGGTA
* * * * * *
1098221 AAACAGATTATAATTGAATGCTT-ACTTGGGAAACGTGACGCA
127 AAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * *
1098263 AAAGCTATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATG-CTTGGGAAAGCCTTATTACT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-CGAAAGCCTTATTACT
* ********** * **
1098327 CGCTTTAANNNNNNNNNNAATCTCATAATTGATTTTAAGTAT-AATATTTTTACATTTTTTATTA
65 CGATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGT-TGAATTTTTTTA-A-TTTTTGGTA
* * * * * ** *
1098391 AAACAAATTATAATTGAATGTCTACCTCAAAAAACAT-AA-AA
127 AAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * *
1098432 AAAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCACTCATTCCTTCGAAAGCTTTATTATTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * * *
1098497 GCTTTAAGT-GATTTTATAATCTCATAATTGATTTTAAGCTAAATGTTTTTATATTTTTTGTCAA
66 GATTTAAATAG-TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGGT-AA
* * * * * * *
1098561 AACAGATTATACTTGATTGTTTGCATAAGGAATCAAGAAGCA
128 AATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * ** * * ** *********
1098603 AAA-CACATGCATTGATAAAAAAAAGTTTATTTATAGTCTCTAAT-AATTC-AANNNNNNNNNNA
1 AAAGC-CATCCATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTTATTA
* * * *
1098665 CTCGATTTAAATAGTTTTATAATATCATAAATGAATTTAAGTTTAA-TTTTTTACATTTTTGGAT
63 CTCGATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGG-T
* * * * *
1098729 AGAACATATTATAATTGAATGTTTGCCTTGGGAAATATGAAGCA
126 AAAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* *** * * * * * *
1098773 AAAGTCATTTGTTAACAAGAAAAGTCCATTTATAGCCACCCGTGCCTTCGAAAGTCTTATTAGTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
** * * * * * *
1098838 CCTTCAAATGGTTTTACAACCTCATAATTGACTTTAAGTTAAATTTTTTTTTACATTTTTGGTTA
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAA--TTTTTTTA-ATTTTTGG-TA
* * * * ** * * *
1098903 AAATAGATTATGATTGAATATTTACCTCAACAAACGTGAATCG
127 AAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* *** * *** ** *
1098946 AAAGCCATCGATTGATGCGAAAAGTCCCTTTATAGTGGGTCACCCCTTCGAAAGCCTTGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * * ***
1099011 -ACTTCTAAA-AATTTTATAAGCTCATAAATT-TTTTTAAGTTGAATTTCCTTTAATTCTCATTA
66 GA-TT-TAAATAGTTTTATAATCTCAT-AATTGATTTTAAGTTGAATTT-TTTTAATTTTTGGTA
* * * * * **
1099073 AAATAGATGATAATTGGATG-TTGACCTCAGGCAACTTGAAGTG
127 AAATAGATTATAATTGAATGTTTG-CCTTAGGAAACATGAAGCA
* * * * *
1099116 AAAGCCATCCATTGACAAGAAAAGTCCACTTATAGTCAATCATGCCTACGAAAGCCCTATTACTT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * *
1099181 GCTTTAAAT-GATTTTATAAAT-TCATAATTGATTATAGGTTGAATTTTTTTACCATTTTAGGTA
66 GATTTAAATAG-TTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTA--ATTTTTGGTA
* * * * * *
1099244 AAACAGATTATAATTGAATGTCTGTCC-TAAGAAGCATGTAGTA
127 AAATAGATTATAATTGAATGTTTG-CCTTAGGAAACATGAAGCA
* **
1099287 AAAGCCA-CCAATTGACAACAAAAGTCCATTTACTA-TCACTCATGCCTTCGAAAGTATTATTAC
1 AAAGCCATCC-ATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTTATTAC
* *********** *
1099350 TCGCTTTAAAT-GATTTTATAATCTTNNNNNNNNNNTTAAGTTGAATTTTTTTACATTTTTTGTT
64 TCGATTTAAATAG-TTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-A-TTTTTGGT
* * * *
1099414 AAAATAAATTAAAATTGAATGTCTGCCTCTA-GAAAC-T-ATAGAA
126 AAAATAGATTATAATTGAATGTTTGCCT-TAGGAAACATGA-AGCA
* * ** * *
1099457 AAAGCCATCCATTGGCAAGAAAAATCCATTTATAGTCACTCATGCCTTTAAAAGCCTTATTATTT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* ** * * * *
1099522 GCA-TAAAATAGTTTTGCAATCTCATAACTAATTTTAAGTTAAATTTTTTTATATTTTGGGTAAA
66 G-ATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGGT-AA
* * * * ** * **
1099586 AACAAATTATAATTAAATGTTTACCACAGAAAATGTGAAGCA
128 AATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * *
1099628 AAAGCCATCCATTGACACA-AAGAGTCCATTTATAGTCCCTCATACCTTTGAAAGCCTTATTACT
1 AAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* ********** * ** * *
1099692 CGCTTTNNNNNNNNNNATAATCTGATAATTGATTTTAAGTTGGGTTGTTTTAAATTTTTGATTAA
65 CGATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTAATTTTTG-GTAA
* * * * * *
1099757 AACATATTTTAATTAGAA-GTCTACCTTGGGAAACATGAAGCA
128 AATAGATTATAATT-GAATGTTTGCCTTAGGAAACATGAAGCA
* * ********
1099799 AAAGCCATCCATCGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCATNNNNNNNN
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
** * * * *
1099864 NNTTGAAATAGTTTTATAATCTCATAATTGATTTTAAG-TCAATTTTTGTTATATTTTCAGTTAA
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT-TTA-ATTTT-TGGTAA
* * * * * * * *
1099928 AACAGATTACAATTCAATGTTTGTCTCAAGAAACATAAAGCG
128 AATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * * *
1099970 TAAGCCATCCAATGGCATGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGTCTTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * ** * **
1100035 -ACTCTAAATGGTTTTATAATCTTGTAAATT-ATTTTAAGTTG-ATTTTTCTTTATTTTTCATTA
66 GA-TTTAAATAGTTTTATAATCTCAT-AATTGATTTTAAGTTGAATTTTT-TTAATTTTT-GGTA
* * ** * *
1100097 AAATAGATGATAATTGGATGTTTTTC-TCGAGAAACGTGAAGCA
127 AAATAGATTATAATTGAATGTTTGCCTTAG-GAAACATGAAGCA
* ** * * * *
1100140 AATGCCATCTGTTGACTAGAAAAATCTATTTATTA-TCAATCATGCCTTCGAAAGTCC-TATTAC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAG-CCTTATTAC
* * ********** *
1100203 TCGATTTACATAGTTTTATAAAT-TCATAATTAATTNNNNNNNNNNTTTTTTTACTATTTTGGTT
64 TCGATTTAAATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTAAT-TTTTGG-T
* * ** *
1100267 AAAACA-AGTTATAATTGAATGTTTGCCCTATGG-AATGTAAAGCA
126 AAAATAGA-TTATAATTGAATGTTTGCCTTA-GGAAACATGAAGCA
* * * * * *
1100311 AAAGCCACCCATTGACAAGAAAAGTCTATTTAAAGTCACTCATGCCTTTGAAAACATTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * *********
1100376 GCTTTACATGGTTTTACAATCTCATAATTGATTTTAAGTTGAATTTTTNNNNNNNNNNGGTTAAA
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTT-TTAATTTTTGG-TAAA
*
1100441 ATAGATTATAATTGAATGTTTGCC-TAGGAAACGTGAAGCA
129 ATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* ** * * * *
1100481 AAAGCTATCCATTGGTAAGAAGAGTCTATTTATAGTCACTCATG-CTGTCAAAAGCCTTACTACT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTATTACT
* * * *
1100545 CGGTTTAAATAGTTTTATAATCTCATAATT-ATTTTTAAGAT-AATTTTTTTACAATTTTAGTTA
65 CGATTTAAATAGTTTTATAATCTCATAATTGA-TTTTAAGTTGAATTTTTTT--AATTTTTGGTA
* ** * *
1100608 AAACAGATTATAATTGAATGTCTACCCTCA--AAACTATGAAGAA
127 AAATAGATTATAATTGAATGT-TTGCCTTAGGAAAC-ATGAAGCA
* * ** * * * * *
1100651 AAACCCATCAATTGGTAAGAAAAGTCCATTTATAGCCACTTATTCCTTTGAAAAGCCTTATTAGT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG-AAAGCCTTATTACT
* * **
1100716 C-ACTTTAAATACTTTTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTACATTTTTCATTA
65 CGA-TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTT-GGTA
* * * *
1100780 AAATAGATTATAGTTGACTGTTTACCTT-GAGAAACGTGAAGCA
127 AAATAGATTATAATTGAATGTTTGCCTTAG-GAAACATGAAGCA
* * * ** *
1100823 AAAGCCATGCATTGACTAGAGAAA-TTCATTTATAGTCTTTTATGCCTTCGAAAGCCTTATTACT
1 AAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
* * * * * * * * * *
1100887 TGGTTTAAATGGTTTTATATTCTAATATTTGATTTTAAATTAAATTTTTTTACATTTTTAGAAAA
65 CGATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGGTAAA
* * * * *
1100952 ATATATTATAATTGGATGTATGCCTTAAGAAACGTGAAGCA
129 ATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * *
1100993 AAAGCCATCCATTGACACGAAAAGTCTATTTATAG-CCCTTCATGCCCTCAAAAGCCTTATTTA-
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCATGCCTTCGAAAGCCTTA-TTAC
* * * *
1101056 TC-ACCTTAAAT-GATTTCATAATCTTACA-AATT-ATTTTAAGTTGAACCTTTTTTTAGTTTTC
64 TCGA-TTTAAATAG-TTTTATAATC-T-CATAATTGATTTTAAGTTGAA--TTTTTTTAATTTTT
** * *
1101117 ATTAAAATAGATTACAATT-AGATG-TTGACCTT-GAGAAACGTGAAGCA
123 GGTAAAATAGATTATAATTGA-ATGTTTG-CCTTAG-GAAACATGAAGCA
* * * * * *
1101164 AAAGCCATTCATTGACAAGAAAAGCCCATTTATAGTAAATCATGCCTTTGAAAGCCCTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * **
1101229 -ACTTTAAA-CGATTTTATAACCTTATAAATT-ATTTCGAA-TTGAATTTTTTT--TGGTTGCCA
66 GA-TTTAAATAG-TTTTATAATCTCAT-AATTGATTT-TAAGTTGAATTTTTTTAATTTTTG---
* * * * * * *
1101288 TTAAAATAGATAATAATTGGATGTTTGCCTCAAGAAACGTGAAGCG
124 GTAAAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * * * *
1101334 AATGCCATCCATTTACAAGAAAGGTCCATTTATAGTCACTCGTGCTTTCGAAAGCATTATTACAC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * * * **
1101399 -ACTTTAAATGGTTTTATAATCTCATATTTGATTTTAGGTTGATTTGTTTTTACATTTTTAGCAA
66 GA-TTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTA-ATTTTT-GGTA
* * * *
1101463 AAATAGACTATAATTGAATGTTTGCCTCAAGAAACTTGAAGCA
127 AAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
** * * * * **
1101506 AAAGCCATCTTTTGATAAAAAAAGTTCATTTATAGTCACTCATGCCTT-TAGAAGTATTATTACT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA-AAGCCTTATTACT
* * * * ********** *
1101570 TGCTTTAAATGGTTTTATAATATCATAANNNNNNNNNNGTTTAA--TTTTTACATTTTTGGTTAA
65 CGATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGG-TAA
* * * * * * * *
1101633 AACATATTATAGTTGAATGTTT-TCTTTGGAAACGTGTATCA
128 AATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * *
1101674 AAAGCCATCCATTGCCAAGAAAAGTCCATTTATAGTCAATCAGGCCTTTC-AAAG-CTCGATTGC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCT-TATTAC
* * * * * *
1101737 TCGCTTCAAATGGTTTTATAAAT-TCATAATTGATTTTAAGTTAAATTTTTTTATTTTTTTAGTC
64 TCGATTTAAATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATTTTTGGT-
* *** * *
1101801 AAAACAGATTATAATTGAATGTCCACCTT-GAGAAATATGAAGCC
126 AAAATAGATTATAATTGAATGTTTGCCTTAG-GAAACATGAAGCA
********** *
1101845 AAAGCCATCCATTGACAAGAAAAGTCCATNNNNNNNNNNTCATGCCTTCGAAAGCATTATTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* ** * * * *
1101910 GCTCGAAAT-G-GTT-TAATCTCATAATTGATTTTAAG-TCAATTTTTTTTACATTTTCGATTAA
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTA-ATTTTTG-GTAA
* * * ** * * **
1101971 AATAGATTACAATTCAATGTTTGCCTCAAAAAACCTAAAGTG
128 AATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * *
1102013 CAAGCCATCCATTGACACA-AAAAGTCCATTTGTAGTCACTCATTCCTTCGAAAGCCTTATTACT
1 AAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT
** ** * * ** * * * ***
1102077 C-ACGCTAAACGGCTTTACAATCTTGTAAATT-ATTTTTAGTTGATTTTTTTTTCAATTCTCATT
65 CGA-TTTAAATAGTTTTATAATCTCAT-AATTGATTTTAAGTTGA-ATTTTTTT-AATTTTTGGT
* * * * * **
1102140 AAAATAGATGATAATTGGATGTTTACCTTAAGAAATATGAAGTG
126 AAAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* ** * * * * * *
1102184 AATGCCATCTGTT-A-ATTGGAAAGTCCATTTGTTA-CCGA-TCATGCCTTCGGAAGCCCTATTA
1 AAAGCCATCCATTGACA-AGAAAAGTCCATTT-ATAGTC-ACTCATGCCTTCGAAAGCCTTATTA
* * * * * *
1102245 CTCGCTTTACATTA-TTTTATAAAT-TTATAATTGATTTCAAGTTAAATTTTTTTACTATTTTGG
63 CTCGATTTA-AATAGTTTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTAAT-TTTTGG
* * * * * ** * *
1102308 TTAAAATAGATTATAATTGAATATCTACCCTAAGAAATGTAAAACA
125 -TAAAATAGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
* * * * * ** ** *
1102354 AAAGCCACCCACTGATAAGAAAAGTCTATTTATAGTCAGTCATGCCTTTAAAAGTATTGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
* * *
1102419 GCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTATTTTACATTCTTTGTTAAA
66 GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTA-ATT-TTTGGTAAA
*
1102484 ATAGATTATAATTGAATGTTT---TTCAGAGAAACGTGAAGCA
129 ATAGATTATAATTGAATGTTTGCCTT-AG-GAAACATGAAGCA
* ** *
1102524 AGAGCCATCCATTGGTAAAAAAAGTCCATTTATA
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATA
1102558 ATCTCATAAT
Statistics
Matches: 3860, Mismatches: 1070, Indels: 433
0.72 0.20 0.08
Matches are distributed among these distances:
167 17 0.00
168 294 0.08
169 321 0.08
170 1251 0.32
171 1483 0.38
172 358 0.09
173 125 0.03
174 10 0.00
175 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.37
Consensus pattern (169 bp):
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTC
GATTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTAATTTTTGGTAAAAT
AGATTATAATTGAATGTTTGCCTTAGGAAACATGAAGCA
Found at i:1100783 original size:341 final size:338
Alignment explanation
Indices: 1097319--1102557 Score: 2553
Period size: 341 Copynumber: 15.4 Consensus size: 338
1097309 NNNNNNNNNN
* * * * * * *
1097319 TTATAAAT-TCATAATTGATTTTAAATTGAATTTTCTTACTATTTTGAGTAAAACAGATTGTAAT
1 TTAT-AATCTCATAATT-ATTTTAAGTTGAATTTTTTTAAT-TTTTCATTAAAATAGATTATAAT
* * * * * * *
1097383 TGAATGTTTGCTCTAAGAAACGTG-AGACAAAAGCGAACCATAGATAAAAAAAAATCCATTTATA
63 TGAATGTTTGC-CTAGGAAACGTGAAG-CAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATA
* * ** * *
1097447 GTCACTCATGCCTTCGACAGCATTATTACTCACTTTTAATAGTTTCATAAT-TACATAATTGATT
125 GTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCT-CATAATTGATT
** * * * * * *
1097511 TTAAG-TTTATTTTTTTA-TATTTTTAGTTAAAACAGATTCTAATTGATTATTTGCCTTGAGAAA
189 TTAAGATAAATTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAA
* * ** * * * * *
1097574 CATGAAGCAAATGCTATGGATTTACAAGAAAAGTTCAGTTATAGTCACTCATGCCTTTGAAAGCT
253 CATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
1097639 TTATTACTCGA-TTTAAATAGTT
318 TTATTACTC-ACTTTAAATA-TT
* * * ** *
1097661 TTATAATGTTAAAATTGATTTTAAGTTGAATTTTTTTAATATTTT-GGTAAACAAAGATTATAAT
1 TTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTAAT-TTTTCATTAAA-ATAGATTATAAT
** * * * *
1097725 TGAATGTTTGCCTTAGGAAATATGAAGCGAAAGCCATCCATTG-CAACAAAAAGTCTATTTGTAG
63 TGAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-GAAAAGTCCATTTATAG
* * ** *
1097789 TCACTCATGCCTTCGAAAACCTTATTGCTCACTTTAAATAGTTTTATAATCAT-ATAAATT-ATA
126 TCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATC-TCAT-AATTGATT
* * * * * * * * * *
1097852 TTAAGTTGAATTTTGTT-C-AGTTTTCA-TTAACATAGATGATAATT-AGATGTTTTCCTTAAGA
189 TTAAGATAAATTTTTTTACTA-TTTT-AGTTAAAACAGATTATAATTGA-ATGTCTGCCCTCAGA
* * * * * * * * * **
1097913 AACATTAA-C-CAAGCCATCCATTGACAAGAAAAGTTCATTCACAGTCAATCATGGCTACGAAAG
251 AACATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAG
* *
1097976 CCTTATTACTCGCTTTAAATGGTT
316 CCTTATTACTCACTTTAAAT-ATT
* * * *
1098000 TTATAAAT-TCATAATTGATTGTAAGTTGAATTTTTTTACTTTTT-TTGTCAAAACAGATTATAA
1 TTAT-AATCTCATAATT-ATTTTAAGTTGAATTTTTTTAATTTTTCAT-T-AAAATAGATTATAA
* * * * * * * *
1098063 ATGAATATCTGCCCCTA-GAAACATAAAGCAAAAGCTATCCATCGACAAGAAAAGTCTATTTATA
62 TTGAATGTTTG--CCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * ** * ** * *
1098127 GTCATTTATTCCTTCGAAAGTATTATTGCTCACTTTAAA-AGGTTTTGTAATTTCATAATTGATT
125 GTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATA-GTTTTATAATCTCATAATTGATT
* * * ** * **
1098191 TTAAGTTGAATTTTTTTAC-ACTCTTAGTTAAAACAGATTATAATTGAATG-CTTACTTGGGAAA
189 TTAAGATAAATTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAA
* * * * * * * *
1098254 CGTGACGCAAAAGCTATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATG-CTTGGGAAAGC
253 CATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTT-TGAAAGC
* *****
1098318 CTTATTACTCGCTTTAANNNNNN
317 CTTATTACTCACTTTAA-ATATT
**** * * * *
1098341 NNNNAATCTCATAATTGATTTTAAGTAT-AATATTTTTACATTTTTTATTAAAACAAATTATAAT
1 TTATAATCTCATAATT-ATTTTAAGT-TGAATTTTTTTA-ATTTTTCATTAAAATAGATTATAAT
* * ** * * *
1098405 TGAATGTCTACCTCAAAAAACAT-AA-AAAAAGCCATCCATTGACAAAAAAAGTCCATTTATAGT
63 TGAATGTTTGCCT-AGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * *
1098468 CACTCATTCCTTCGAAAGCTTTATTA-TTCGCTTTAAGT-GATTTTATAATCTCATAATTGATTT
127 CACTCATGCCTTCGAAAGCCTTATTACTT-GCTTTAAATAG-TTTTATAATCTCATAATTGATTT
* * * * * * * * * *
1098531 TAAGCTAAATGTTTTTA-TATTTTTTGTCAAAACAGATTATACTTGATTGTTTG-CATAAGGAAT
190 TAAGATAAATTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCA-GAAA
* * * ** * * * ** *
1098594 CAAGAAGCAAAA-CACATGC-ATTGATAAAAAAAAGTTTATTTATAGTCTCTAAT--AATTCAAN
253 CATGAAGCAAAAGC-CAT-CAATTGA-CAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAA-
*********
1098655 NNNNNNNNNACTCGA-TTTAAATAGTT
314 AGCCTTATTACTC-ACTTTAAATA-TT
* * * * * * * *
1098681 TTATAATATCATAAATGAATTTAAGTTTAA-TTTTTTACATTTTTGGA-TAGAACATATTATAAT
1 TTATAATCTCAT-AATTATTTTAAGTTGAATTTTTTTA-ATTTTT-CATTAAAATAGATTATAAT
* ** * *** * *
1098744 TGAATGTTTGCCTTGGGAAATATGAAGCAAAAGTCATTTGTTAACAAGAAAAGTCCATTTATAGC
63 TGAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * * ** * * * * *
1098809 CACCCGTGCCTTCGAAAGTCTTATTAGTCCCTTCAAATGGTTTTACAACCTCATAATTGACTTTA
127 CACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTTA
* * * * * ** *
1098874 AGTTAAATTTTTTTTTAC-ATTTTTGGTTAAAATAGATTATGATTGAATAT-TTACCTCAACAAA
192 AGATAAA--TTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTC-AGAAA
* * * * *** * **** ** *
1098937 CGTGAATCGAAAGCCATCGATTGATGCGAAAAGTCCCTTTATAGTGGGTCACCCCTTCGAAAGCC
253 CATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
* *
1099002 TTGTTACTCACTTCTAAAAATT
318 TTATTACTCACTT-TAAATATT
* * * * *
1099024 TTATAAGCTCATAAATTTTTTTAAGTTGAATTTCCTTTAA-TTCTCATTAAAATAGATGATAATT
1 TTATAATCTCAT-AATTATTTTAAGTTGAATTT-TTTTAATTTTTCATTAAAATAGATTATAATT
* * * ** *
1099088 GGATG-TTGACCTCAGGCAACTTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCACTTATAGT
64 GAATGTTTG-CCT-AGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* * * *
1099152 CAATCATGCCTACGAAAGCCCTATTACTTGCTTTAAAT-GATTTTATAAAT-TCATAATTGATTA
127 CACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAG-TTTTAT-AATCTCATAATTGATTT
* * * * * * * *
1099215 TAGGTTGAATTTTTTTACCATTTTAGGTAAAACAGATTATAATTGAATGTCTGTCCTAAGAAGCA
190 TAAGATAAATTTTTTTACTATTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAACA
* * * * * * **
1099280 TGTAGTAAAAGCCACCAATTGACAACAAAAGTCCATTTACTA-TCACTCATGCCTTCGAAAGTAT
255 TGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTA-TAGCCACTCATGCCTTTGAAAGCCT
*
1099344 TATTACTCGCTTTAAATGATT
319 TATTACTCACTTTAAAT-ATT
********** ** * *
1099365 TTATAATCTTNNNNNNNNNNTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAAATTAAAATT
1 TTATAATC-TCATAATTATTTTAAGTTGAATTTTTTTA-ATTTTTCATTAAAATAGATTATAATT
* * * *
1099430 GAATGTCTGCCTCTA-GAAAC-T-ATAGAAAAAGCCATCCATTGGCAAGAAAAATCCATTTATAG
64 GAATGTTTG-C-CTAGGAAACGTGA-AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
** * * * ** * *
1099492 TCACTCATGCCTTTAAAAGCCTTATTATTTGCATAAAATAGTTTTGCAATCTCATAACTAATTTT
126 TCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTT
* * * * * ** *
1099557 AAGTTAAATTTTTTTA-TATTTTGGGTAAAAACAAATTATAATTAAATGT-TTACCACAGAAA-A
191 AAGATAAATTTTTTTACTATTTT-AGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAACA
* * *
1099619 TGTGAAGCAAAAGCCATCCATTGACACA-AAGAGTCCATTTATAGTCC-CTCATACCTTTGAAAG
255 --TGAAGCAAAAGCCATCAATTGACA-AGAAAAGTCCATTTATAG-CCACTCATGCCTTTGAAAG
* *******
1099682 CCTTATTACTCGCTTTNNNNNNNN
316 CCTTATTACTCACTTT-AAATATT
** * ** * * * * *
1099706 NNATAATCTGATAATTGATTTTAAGTTGGGTTGTTTTAAATTTTTGATTAAAACATATTTTAATT
1 TTATAATCTCATAATT-ATTTTAAGTTGAATT-TTTTTAATTTTTCATTAAAATAGATTATAATT
* * * * *
1099771 AGAA-GTCTACCTTGGGAAACATGAAGCAAAAGCCATCCATCGACAAGAAAAGTCCATTTATAGT
64 -GAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
* ********** *
1099835 CACTCATGCCTTCGAAAGCATNNNNNNNNNNTTGAAATAGTTTTATAATCTCATAATTGATTTTA
127 CACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTTA
* * * * *
1099900 AG-TCAATTTTTGTTA-TATTTTCAGTTAAAACAGATTACAATTCAATGTTTG-TCTCAAGAAAC
192 AGATAAATTTTT-TTACTATTTT-AGTTAAAACAGATTATAATTGAATGTCTGCCCTC-AGAAAC
* ** * * * * * *
1099962 ATAAAGCGTAAGCCATCCAA-TGGCATGAAAAGTCCATTTGTAGTCACTCATGCCTTCGAAAGTC
254 ATGAAGCAAAAGCCAT-CAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
* *
1100026 TTATTACTCACTCTAAATGGTT
318 TTATTACTCACTTTAAAT-ATT
** * *
1100048 TTATAATCTTGTAAATTATTTTAAGTTG-ATTTTTCTTTATTTTTCATTAAAATAGATGATAATT
1 TTATAATCTCAT-AATTATTTTAAGTTGAATTTTT-TTAATTTTTCATTAAAATAGATTATAATT
* ** * * ** * * *
1100112 GGATGTTTTTCTCGAGAAACGTGAAGCAAATGCCATCTGTTGACTAGAAAAATCTATTTATTA-T
64 GAATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGT
* * * * * *
1100176 CAATCATGCCTTCGAAAGTCC-TATTACTCGATTTACATAGTTTTATAAAT-TCATAATTAATTN
127 CACTCATGCCTTCGAAAG-CCTTATTACTTGCTTTAAATAGTTTTAT-AATCTCATAATTGATTT
********* * * *
1100239 NNNNNNNNNTTTTTTTACTATTTTGGTTAAAACA-AGTTATAATTGAATGTTTGCCCT-ATGGAA
190 TAAGATAAATTTTTTTACTATTTTAGTTAAAACAGA-TTATAATTGAATGTCTGCCCTCA-GAAA
** * * * * * * * *
1100302 TGTAAAGCAAAAGCCACCCATTGACAAGAAAAGTCTATTTAAAGTCACTCATGCCTTTGAAAACA
253 CATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
* * *
1100367 TTATTACTCGCTTTACATGGTT
318 TTATTACTCACTTTAAAT-ATT
* ***********
1100389 TTACAATCTCATAATTGATTTTAAGTTGAATTTTTNNNNNNNNNNGGTTAAAATAGATTATAATT
1 TTATAATCTCATAATT-ATTTTAAGTTGAATTTTT-TTAATTTTTCATTAAAATAGATTATAATT
* ** * *
1100454 GAATGTTTGCCTAGGAAACGTGAAGCAAAAGCTATCCATTGGTAAGAAGAGTCTATTTATAGTCA
64 GAATGTTTGCCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA
* * * *
1100519 CTCATG-CTGTCAAAAGCCTTACTACTCGGTTTAAATAGTTTTATAATCTCATAATT-ATTTTTA
129 CTCATGCCT-TCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGA-TTTTA
* *
1100582 AGAT-AATTTTTTTACAATTTTAGTTAAAACAGATTATAATTGAATGTCTACCCTCA-AAACTAT
192 AGATAAATTTTTTTACTATTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAAC-AT
* * ** * *
1100645 GAAGAAAAACCCATCAATTGGTAAGAAAAGTCCATTTATAGCCACTTATTCCTTTGAAAAGCCTT
256 GAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTG-AAAGCCTT
*
1100710 ATTAGTCACTTTAAATACTT
320 ATTACTCACTTTAAATA-TT
*
1100730 TTATAATCTCATAATTCATTTTAAGTTGAATTTTTTTACATTTTTCATTAAAATAGATTATAGTT
1 TTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTA-ATTTTTCATTAAAATAGATTATAATT
* * * * * *
1100795 GACTGTTTACCTTGAGAAACGTGAAGCAAAAGCCATGCATTGACTAGAGAAA-TTCATTTATAGT
64 GAATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGT
** * * * * * *
1100859 CTTTTATGCCTTCGAAAGCCTTATTACTTGGTTTAAATGGTTTTATATTCTAATATTTGATTTTA
127 CACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTTA
* * * * * * * *
1100924 A-ATTAAATTTTTTTAC-ATTTTTAG-AAAAATATATTATAATTGGATGTATGCCTTAAGAAACG
192 AGA-TAAATTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAACA
* * * * **
1100986 TGAAGCAAAAGCCATCCATTGACACGAAAAGTCTATTTATAGCC-CTTCATGCCCTCAAAAGCCT
255 TGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCAC-TCATGCCTTTGAAAGCCT
*
1101050 TATTTA-TCACCTTAAATGATT
319 TA-TTACTCACTTTAAAT-ATT
* * *
1101071 TCATAATCTTACA-AATTATTTTAAGTTGAACCTTTTTTT-AGTTTTCATTAAAATAGATTACAA
1 TTATAATC-T-CATAATTATTTTAAGTTGAA--TTTTTTTAATTTTTCATTAAAATAGATTATAA
* * *
1101134 TT-AGATG-TTGACCTTGAGAAACGTGAAGCAAAAGCCATTCATTGACAAGAAAAGCCCATTTAT
62 TTGA-ATGTTTG-CCTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * * ** * * *
1101197 AGTAAATCATGCCTTTGAAAGCCCTATTACTCACTTTAAA-CGATTTTATAACCTTATAAATT-A
124 AGTCACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAG-TTTTATAATCTCAT-AATTGA
* * * * ** * * * *
1101260 TTTCGAA-TTGAATTTTTTT--TGGTTGCCA-TTAAAATAGATAATAATTGGATGTTTG-CCTCA
187 TTT-TAAGATAAATTTTTTTACT-ATT-TTAGTTAAAACAGATTATAATTGAATGTCTGCCCTC-
* * * * * * * *
1101320 AGAAACGTGAAGCGAATGCCATCCATTTACAAGAAAGGTCCATTTATAGTCACTCGTG-CTTTCG
248 AGAAACATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTT-G
* * *
1101384 AAAGCATTATTACACACTTTAAATGGTT
312 AAAGCCTTATTACTCACTTTAAAT-ATT
* * * *
1101412 TTATAATCTCATATTTGATTTTAGGTTGATTTGTTTTTACATTTTTAGCA--AAAATAGACTATA
1 TTATAATCTCATAATT-ATTTTAAGTTGAATT-TTTTTA-ATTTTT--CATTAAAATAGATTATA
* * ** * * *
1101475 ATTGAATGTTTGCCTCAAGAAACTTGAAGCAAAAGCCATCTTTTGATAAAAAAAGTTCATTTATA
61 ATTGAATGTTTGCCT-AGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
* ** * * ******
1101540 GTCACTCATGCCTT-TAGAAGTATTATTACTTGCTTTAAATGGTTTTATAATATCATAANNNNNN
125 GTCACTCATGCCTTCGA-AAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATT
**** * * * * * ** * **
1101604 NNNNGTTTAA--TTTTTAC-ATTTTTGGTTAAAACATATTATAGTTGAATGT-TTTCTTTGGAAA
189 TTAAGATAAATTTTTTTACTA-TTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAA
* * * * * * * * *
1101665 CGTGTATCAAAAGCCATCCATTGCCAAGAAAAGTCCATTTATAGTCAATCAGGCCTTTCAAAG-C
253 CATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
* * * * *
1101729 TCGATTGCTCGCTTCAAATGGTT
318 T-TATTACTCACTTTAAAT-ATT
* * * * *
1101752 TTATAAAT-TCATAATTGATTTTAAGTTAAATTTTTTTATTTTTTTAGTCAAAACAGATTATAAT
1 TTAT-AATCTCATAATT-ATTTTAAGTTGAATTTTTTTAATTTTTCA-TTAAAATAGATTATAAT
*** * ** * *******
1101816 TGAATGTCCACCTTGAGAAATATGAAGCCAAAGCCATCCATTGACAAGAAAAGTCCATNNNNNNN
63 TGAATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
*** * * ** *
1101881 NNNTCATGCCTTCGAAAGCATTATTACTCGCTCGAAAT-G-GTT-TAATCTCATAATTGATTTTA
127 CACTCATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTTA
* * * * * * *
1101943 AG-TCAATTTTTTTTAC-ATTTTCGATTAAAATAGATTACAATTCAATGTTTG-CCTCAAAAAAC
192 AGAT-AAATTTTTTTACTATTTTAG-TTAAAACAGATTATAATTGAATGTCTGCCCTC-AGAAAC
* * *** * * * * *
1102005 CTAAAGTGCAAGCCATCCATTGACACA-AAAAGTCCATTTGTAGTCACTCATTCCTTCGAAAGCC
254 ATGAAGCAAAAGCCATCAATTGACA-AGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCC
** ***
1102069 TTATTACTCACGCTAAACGGCT
318 TTATTACTCACTTTAAA-TATT
* ** * * * *
1102091 TTACAATCTTGTAAATTATTTTTAGTTGATTTTTTTTTCAA-TTCTCATTAAAATAGATGATAAT
1 TTATAATCTCAT-AATTATTTTAAGTTGA-ATTTTTTT-AATTTTTCATTAAAATAGATTATAAT
* * * ** ** * ** * * *
1102155 TGGATGTTTACCTTAAGAAATATGAAGTGAATGCCATCTGTT-A-ATTGGAAAGTCCATTTGTTA
63 TGAATGTTTGCC-TAGGAAACGTGAAGCAAAAGCCATCCATTGACA-AGAAAAGTCCATTT-ATA
* * * * * *
1102218 -CCGA-TCATGCCTTCGGAAGCCCTATTACTCGCTTTACATTA-TTTTATAAAT-TTATAATTGA
125 GTC-ACTCATGCCTTCGAAAGCCTTATTACTTGCTTTA-AATAGTTTTAT-AATCTCATAATTGA
* * * * * * *
1102279 TTTCAAGTTAAATTTTTTTACTATTTTGGTTAAAATAGATTATAATTGAATATCTACCCTAAGAA
187 TTTTAAGATAAATTTTTTTACTATTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAA
** * * * * * * * * * * *
1102344 ATGTAAAACAAAAGCCACCCACTGATAAGAAAAGTCTATTTATAGTCAGTCATGCCTTTAAAAGT
252 ACATGAAGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGC
* * *
1102409 ATTGTTACTCGCTTTAAATAGTT
317 CTTATTACTCACTTTAAATA-TT
* *
1102432 TTATAATCTCATAATTGATTTTAAGTTGAATTATTTTACATTCTTT-GTTAAAATAGATTATAAT
1 TTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTA-ATT-TTTCATTAAAATAGATTATAAT
** * ** *
1102496 TGAATGTTTTTC-AGAGAAACGTGAAGCAAGAGCCATCCATTGGTAAAAAAAGTCCATTTATA
63 TGAATGTTTGCCTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATA
1102558 ATCTCATAAT
Statistics
Matches: 3688, Mismatches: 985, Indels: 450
0.72 0.19 0.09
Matches are distributed among these distances:
335 1 0.00
336 13 0.00
337 8 0.00
338 88 0.02
339 619 0.17
340 414 0.11
341 1554 0.42
342 711 0.19
343 256 0.07
344 20 0.01
345 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.37
Consensus pattern (338 bp):
TTATAATCTCATAATTATTTTAAGTTGAATTTTTTTAATTTTTCATTAAAATAGATTATAATTGA
ATGTTTGCCTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
CATGCCTTCGAAAGCCTTATTACTTGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGAT
AAATTTTTTTACTATTTTAGTTAAAACAGATTATAATTGAATGTCTGCCCTCAGAAACATGAAGC
AAAAGCCATCAATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTTGAAAGCCTTATTACT
CACTTTAAATATT
Found at i:1102655 original size:121 final size:121
Alignment explanation
Indices: 1102431--1102678 Score: 331
Period size: 121 Copynumber: 2.0 Consensus size: 121
1102421 TTTAAATAGT
* * *
1102431 TTTATAATCTCATAATTGATTTTAAGTTGAATTATTTTACATTCTTTGTTAAAATAGATTATAAT
1 TTTATAATCTCATAATTAATTTCAAGTTGAATTATTTTACATTCTTTGTTAAAATAAATTATAAT
* * *
1102496 TGAATGTTTTTCAGAGAAACGTGAAGCAAGAGCCATCCATTGGTAAAAAAAGTCCA
66 TGAATGTTTTTCAGAAAAACGTGAAGAAAAAGCCATCCATTGGTAAAAAAAGTCCA
* * *
1102552 TTTATAATCTCATAATTAATTTCAGGTTGAGTTTTTTTACATT-TTTGGTTAAAA-AAATTATAA
1 TTTATAATCTCATAATTAATTTCAAGTTGAATTATTTTACATTCTTT-GTTAAAATAAATTATAA
* * * *
1102615 TTGAATGTTTTCCTCA-AAAAATGTGAAGAAAAAGCGATCCATTGGTAAAAGAAGTCTA
65 TTGAATGTTTT--TCAGAAAAACGTGAAGAAAAAGCCATCCATTGGTAAAAAAAGTCCA
1102673 TTTATA
1 TTTATA
1102679 GCTACTCATT
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
120 22 0.20
121 86 0.77
122 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (121 bp):
TTTATAATCTCATAATTAATTTCAAGTTGAATTATTTTACATTCTTTGTTAAAATAAATTATAAT
TGAATGTTTTTCAGAAAAACGTGAAGAAAAAGCCATCCATTGGTAAAAAAAGTCCA
Found at i:1103105 original size:170 final size:169
Alignment explanation
Indices: 1102552--1106696 Score: 2271
Period size: 171 Copynumber: 24.4 Consensus size: 169
1102542 AAAAAGTCCA
* * * * * * *
1102552 TTTATAATCTCATAATTAATTTCAGGTTGAGTTTTTTTACATTTTTGGTTAAAA-AAATTATAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGA-ATTTTTTACATTTTTTGTTAAAACAGATTATAAT
* * ** ** * * **
1102616 TGAATGTTTTCCTCAAAAAATGTGAAGAAAAAGCGATCCATTGGTAA-AAGAAG-TCTATTTATA
65 TGAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAA-AAGTTC-ATTTATA
* * * * * * **
1102679 G-CTACTCATTCCTTCAAAAAGCTTTATTAGTTGCTTTTAATTTT
127 GTC-ACTCATGCCTTC-GAAAGCCTTATTACTCGCTTTAAATAGT
* * * * ** * *
1102723 TTTATAATCTCATAGTTCATTTTAAGTTGAATTTTTTTATATTTTTCATTAAAATAGATTATAGT
1 TTTATAATTTCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAAT
* * * * **
1102788 TGATTGTTTACCCT-GAGAAACATGAAGCAAAAGCCATGCATTAACAAGAAAACCTCATTTATAG
65 TGAATGTTTACCTTAG-GAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAG
** * * * *
1102852 TCTTTTATACCTTCAAAAGCCTTATTACTC-CGTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTCGC-TTTAAATAGT
** ** **
1102894 TTTAT-ATTCTCATTTTTCTTTTTAAGTTGAATTTTTTTACATTTTTTGAAAAAACAGATTATAA
1 TTTATAATT-TCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAA
* * *
1102958 TTGAATGTTTACCTCAGGAAACGTGAAGCAAAACCATCCATTGACACA-AAAAGTTCATATATAG
64 TTGAATGTTTACCTTAGGAAACATGAAGCAAAACCATCCATTGACA-AGAAAAGTTCATTTATAG
* ** * *
1103022 CTC-CTCATGCCTTCGATAGTATTATTACTCGCTTTTAATAAT
128 -TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* *
1103064 TTTATAATTTCGTAATTGATTTTAAGTTAAATTTCTTTACATTTTTTGTTAAAACAGATTATAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGAATTT-TTTACATTTTTTGTTAAAACAGATTATAAT
* * * * * ** * * *
1103129 TGATTGTTTACCTT-GAGAAACGTAAAGCAAATGCTATGGATTTACAAGAAAAGTTTAGTTATAG
65 TGAATGTTTACCTTAG-GAAACATGAAGCAAA-ACCATCCATTGACAAGAAAAGTTCATTTATAG
* * * * *
1103193 TCACTCACGCTTTTGAAAGCTTTATTACTCGGTTTAAATAGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * * *
1103235 TTCATAATCTT-AAAATTGATTTTAAGTTGAATCTTTTTA-ATATTTTGGTAATGAA-ATATTAT
1 TTTATAAT-TTCATAATTGATTTTAAGTTGAAT-TTTTTACATTTTTTGTTAA--AACAGATTAT
* * * * * * * *
1103297 AATTGAATGTTTGCCTTAGGAAACGTGAAGTGAAAGCCATCCATTGCCATGAAAAGTCCATTTGT
62 AATTGAATGTTTACCTTAGGAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGTTCATTTAT
* * * * *
1103362 AGTCACTCATGCCTTTGAAAACTTTATTACTCACTTTAAACAGT
126 AGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * * * ** * *
1103406 TTTATGATCAT-ATAAATT-ATATTAAGTTGAATTTTTTTCAGTTTTCATTAAAATAGATGATAA
1 TTTATAAT-TTCAT-AATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAA
* * * * *
1103469 TT-AGATGTTTAACTTAAGAAACATGAA-CCAAGCCATCCATTGACAAGAAAAGTTCATTCATAG
64 TTGA-ATGTTTACCTTAGGAAACATGAAGCAAAACCATCCATTGACAAGAAAAGTTCATTTATAG
* * * * * *
1103532 TCAATCATGGCTTTGAAAGCCCTATTACTCGCTTTAGATGGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * *
1103574 TTTATAAATTT-ATAATTGATTATAAGTTGAATTTTTTTACTTTTTTTGTCAAAACAGATTATAA
1 TTTAT-AATTTCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAA
* * * ** * ** * * *
1103638 ATGAATGTCTGCC-CCGAGAAACATAAAGTGGAAGCAATCCATTGACAAGAAAAG-TCTATTTAC
64 TTGAATGTTTACCTTAG-GAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGTTC-ATTTAT
* * * *
1103701 AGTCACTCATTCTTTC-ACAAGCATTATTACTCGTTTTAAA-AGGT
126 AGTCACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATA-GT
* * * * * *
1103745 TTTGTAATTTTATAATTGATTTTGAA-TTGAATCTTTTTATATTCTTCGTTAAAGCAGATTATAA
1 TTTATAATTTCATAATTGATTTT-AAGTTGAAT-TTTTTACATTTTTTGTTAAAACAGATTATAA
* * * * *
1103809 TTGAATGTTTA-CTTGGGAAACGTGACA-CAAAAGCCATCCATTAAAAAGAAAAGTCCATTTATA
64 TTGAATGTTTACCTTAGGAAACATGA-AGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATA
* * ** *
1103872 CTCGCTCATGTTTTCGAAAGCCTTATTACTCGCTTTAAA-CGAT
127 GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAG-T
* * * *
1103915 TTTATAATCTCATAATCGATTTTAAGTAGAATATTTTTACA-TTTTTGGTAAAACAGATTATAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGAAT-TTTTTACATTTTTTGTTAAAACAGATTATAAT
* * * * * * ** *
1103979 TGAATGTCTACCTCAAGAAACATAAAGAAAAAGTCATCCATTGGTAAGAAAAGTGCATTTATAGT
65 TGAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAGT
* * ** * *
1104044 CAC-CTATTCCTTGGAAAGTTTTTTTACTCGCTTTAAGTAGT
129 CACTC-ATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * ** *
1104085 TTTATAATCTCATAATTGATTTTAAGCTGAATTTTTTTATATTTTTTGTCCAAACAGATTATACT
1 TTTATAATTTCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAAT
* * * ** * * * * *
1104150 TGATTGTTT-GCGTAACAAATCATGAAGCAAAAGCAATGCATTGATAAGAAACGTTTATTTATAG
65 TGAATGTTTACCTTAGGAAA-CATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAG
** * * *
1104214 TTTCTTATGCCTTCAAAAGCCTTTTTACTCTG-TTTAAATAGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTC-GCTTTAAATAGT
* * * * * * *
1104256 TTTATAATATCATAATTGATTTCAAGTTTAATTTTTTACATTTTTGGATAGAACATATTATAATT
1 TTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATT
* * * * ** *
1104321 GAATGTTTTCCTTGGGAAACATTAAGCAAAAGACATCTGTTGATAAGAAAAGTTCATTTATAGTC
66 GAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAGTC
* * * * * *
1104386 ACTCGTGCCTTTGAAAGCCTTATTAGTTGCTTCAAATGGT
130 ACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * * * *
1104426 TTTATAACTTCATAATTGACTTTAAGTTAAATTTTTTTTACATTTTTGGTTAAAATAGATTATGA
1 TTTATAATTTCATAATTGATTTTAAGTTGAA--TTTTTTACATTTTTTGTTAAAACAGATTATAA
* * * * * * * * *
1104491 TTGAATGTTTGCCTAAGGAAACGTGAAGCGACAGCCATCGC-TTGATATGAAAAGTCCCTTTATA
64 TTGAATGTTTACCTTAGGAAACATGAAGC-AAAACCATC-CATTGACAAGAAAAGTTCATTTATA
** ** * * * *
1104555 GTGGCTCACCCCTTCGAAAGCTTTGTTACTCACTTTCAAA-AAT
127 GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTT-AAATAGT
********* * ** * * * *
1104598 TTTATANNNNNNNNNNTT-ATTTTAAGTTGAATTTCTTTTA-A-TTCTCATTACAATAGGTGATA
1 TTTATA-ATTTCATAATTGATTTTAAGTTGAA-TT-TTTTACATTTTTTGTTAAAACAGATTATA
* * * * * * * * * *
1104660 ATTGGATGGTTGCCTCAAGAAACTTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCACTTATA
63 ATTGAATGTTTACCTTAGGAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGTTCATTTATA
* * * * * *
1104725 GTCAATCATACCTACAAAAG-CTCTATTACTTGCTTTAAATGGT
127 GTCACTCATGCCTTCGAAAGCCT-TATTACTCGCTTTAAATAGT
* * * *
1104768 TTTATAAATTT-ATAATTGATTATAAGTTGAATTTGTTTAC-TGTTTTAGGTAAAATAGATTATA
1 TTTAT-AATTTCATAATTGATTTTAAGTTGAATTT-TTTACAT-TTTTTGTTAAAACAGATTATA
* ** * * * * * **
1104831 ATTGAATGTCTGTCGTAAGAAGCAT-ACAACAAAAGCCACCCATTGACAACTAAAG-TCTATTTA
63 ATTGAATGTTTACCTTAGGAAACATGA-AGCAAAA-CCATCCATTGACAAGAAAAGTTC-ATTTA
* * * * *
1104894 TAGTCACTCACGCTTTCGAAAGCATTATTACTCGCTCTAAATGGT
125 TAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * * *
1104939 TTTATAATCTT-ATAATTGATTTTGAGTTAAATTCTTTTACATATTTAGTTAAAACAAATTATAA
1 TTTATAAT-TTCATAATTGATTTTAAGTTGAATT-TTTTACATTTTTTGTTAAAACAGATTATAA
* * * * * **
1105003 TTGAATGTCTACCTT-GAGACACGTGTAGGAAAAGCCATCCATTGGTAAG-AAA-TATCTATTTA
64 TTGAATGTTTACCTTAG-GAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGT-TC-ATTTA
* * * * * * *
1105065 TAGTTACTCATGCCTTCAAAAGCCTTATT-TTTGCATAAAATGGT
125 TAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* ** * * * * ** * * *
1105109 TTTGTAACCTCATAACTGATTTTAAGTTGAATGTTTT-CAGATTTTGGACAAAAAAAAATATAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTACA-TTTTTTGTTAAAACAGATTATAAT
* * * * * * *
1105173 TGAATGTTTACCATAGGAAACATGAAGCGAAAGCCATCCATTGATATGAAGAGTCCATTTTTAGT
65 TGAATGTTTACCTTAGGAAACATGAAGC-AAAACCATCCATTGACAAGAAAAGTTCATTTATAGT
* *********
1105238 CACTCATGCCTTTGAAAGCCTTATTACTCGCTNNNNNNNNN
129 CACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * * *
1105279 NTTATAATCTCATAATTGATTTTAAGTT-AGATTTTTTAAATTTTTGGTTAAAACATATTATAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGA-ATTTTTTACATTTTTTGTTAAAACAGATTATAAT
* * * * * *
1105343 TGAAAGTCTACCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTTATAGT
65 TGAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAGT
* * * * *
1105408 CACTCATGCCTTCAAAAGCATTATTACTCGCATGAAATGGT
129 CACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * ** * * *
1105449 TTTATAATCTCATAACTGATTTTAAG-TCAATTTTTTTTATTTTTAGTTAAAACATATTACAATT
1 TTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATT
* * ** * *
1105513 GAATGTTTGCCTTAGGAAACGTGAAGCAAAAGCCATCCCCTGACACGAAAAGTCCATTTATAGTC
66 GAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATAGTC
** * *
1105578 GTTCATGCCTTTGAAAGCCTTATT-CTTCACTTTAAAT-GAT
130 ACTCATGCCTTCGAAAGCCTTATTAC-TCGCTTTAAATAG-T
* * * * *
1105618 TTTATAATCTTAAAAATT-ATTTTAAGTTGAACTTTTTTTCAATTTTTATT--AA-A-A-TAT-A
1 TTTATAAT-TTCATAATTGATTTTAAGTTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAA
* * ** *
1105676 TTACAAT-TTTA----A-GAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGGCCACTTATA
64 TT-GAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTCATTTATA
* * * * * *
1105735 GTCAATCACGCCTTCGAAAGCCCTGTTACTCACTTTAAA-CGAT
127 GTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAG-T
* * * **** ** * *
1105778 TTTATAACCTT-ATAAATT-ATTTCAATTTGAATTTTTTTTGGTTGCTGTTAAAATAGATGATAA
1 TTTATAA-TTTCAT-AATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAA
* * * * ** * ** * * * * *
1105841 TTGGATGTTTGCCTCAAGAAATGTGAAGTGAATGCTATCCATTGACAGGAAAGGTCCATTTATAA
64 TTGAATGTTTACCTTAGGAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGTTCATTTATAG
* * * * * *
1105906 TCACTCTTACTTTCGAAAACCTTATTACTCACTTTAAATGGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * ** *
1105948 TTTATAATCTCAAAATTGATTTT-AGATTGAATTTTTTTACATTTTTAGAAAAAATAGATTATAA
1 TTTATAATTTCATAATTGATTTTAAG-TTGAA-TTTTTTACATTTTTTGTTAAAACAGATTATAA
* * * * * * *
1106012 TTGAATCTTT-GCTCCAAGAAACTTGAAGCAAAAGCCAT-CATTTAACAAAAAAAGTTCATTTAT
64 TTGAATGTTTACCT-TAGGAAACATGAAGCAAAA-CCATCCA-TTGACAAGAAAAGTTCATTTAT
* *** * * *
1106075 AGTCACTCATGCCTTCAAAAATATTATTAGTTGCTTTAAATTGT
126 AGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * * *
1106119 TTTATAATATCATAATTGATTTTAAGTTTAA-TTTTTACATTTTTAGTTAAAACATATTATAATT
1 TTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATT
** * * *
1106183 GAATGTTTTTC-TGGGAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAG-TCTATTTATAGT
66 GAATGTTTACCTTAGGAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGTTC-ATTTATAGT
* * * *
1106246 CACTCATGCCTTC-AGAAGCCATATTATTTG-TATAAA-ACGGT
129 CACTCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATA--GT
* * * * ** ** * * *
1106287 TTTGTAATCTCATAACTGATTTTAAGTTGATTCTTTTTATGTTTTGGGTAAAAACAAATTAGAAT
1 TTTATAATTTCATAATTGATTTTAAGTTGAAT-TTTTTACATTTTTTGTTAAAACAGATTATAAT
* ** * * * * * *
1106352 TGATTGCCTGCCTT-GAGAAATATGAAGCCAAAGCCATCCATTAATAAGAAAAGTCCATTTATAG
65 TGAATGTTTACCTTAG-GAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGTTCATTTATAG
* * ** * * *
1106416 TTACTCATGCGTTCGAAAGTATTATTACTCACTTGAAATGGT
128 TCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
* * ** *
1106458 TTTATAATCTCATAATTGATTTTAAG-TCAATTTTTTTTTTTACATTTTCAGTTAAAACATATTA
1 TTTATAATTTCATAATTGATTTTAAGTTGAA-----TTTTTTACATTTTTTGTTAAAACAGATTA
* * * * * * * * * * *
1106522 CAATTCAATGTTTGCCTCAAGAAACCTAAAGTTCAACA-CATCCATTGACATGAAAAATCCATTT
61 TAATTGAATGTTTACCTTAGGAAACATGAAG--CAAAACCATCCATTGACAAGAAAAGTTCATTT
* * * * **
1106586 GTAGTCATTCATACCTTCGAAAGCCTTATTACTCAG-TCTAAACGGT
124 ATAGTCACTCATGCCTTCGAAAGCCTTATTACTC-GCTTTAAATAGT
* * * ** * *
1106632 TTTATAGTCTTGCA-AATT-TTTTTAAGTTG-ATTTTTTTCATTTTTCATTAAAATAGATGATAA
1 TTTATAAT-TT-CATAATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAA
1106694 TTG
64 TTG
1106697 GTTGTTATAA
Statistics
Matches: 3037, Mismatches: 781, Indels: 314
0.73 0.19 0.08
Matches are distributed among these distances:
159 13 0.00
160 98 0.03
161 4 0.00
162 1 0.00
163 1 0.00
164 4 0.00
165 12 0.00
166 5 0.00
167 13 0.00
168 177 0.06
169 391 0.13
170 954 0.31
171 1014 0.33
172 213 0.07
173 12 0.00
174 113 0.04
175 10 0.00
176 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (169 bp):
TTTATAATTTCATAATTGATTTTAAGTTGAATTTTTTACATTTTTTGTTAAAACAGATTATAATT
GAATGTTTACCTTAGGAAACATGAAGCAAAACCATCCATTGACAAGAAAAGTTCATTTATAGTCA
CTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATAGT
Found at i:1103220 original size:341 final size:341
Alignment explanation
Indices: 1102552--1106675 Score: 2206
Period size: 341 Copynumber: 12.1 Consensus size: 341
1102542 AAAAAGTCCA
* * * * *
1102552 TTTATAATCTCATAATTAATTTCAGGTTGAGTTTTTTTACATTTTTGGTTAAAAA-A-ATTATAA
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGG-AAAAAACAGATTATAA
* ** ** * **
1102615 TTGAATGTTTTCCTCAAAAAATGTGAAGAAAAAGCGATCCATTGGTAA-AAGAAG-TCTATTTAT
65 TTGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAA-AAGTTC-ATTTAT
* * * * ** * * *
1102678 AG-CTACTCATTCCTTCAAAAAGCTTTATTAGTTGCTTTTAATTTTTTTATAATCTCATAGTTCA
128 AGTC-ACTCATGCCTTC-GAAAG-TTTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGA
* * * * *
1102742 TTTTAAGTTGAATTTTTTTATATTTTTCATTAAAATAGATTATAGTTGATTGTTTACCCTGAGAA
190 TTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAA
** ** * * **
1102807 ACATGAAGCAAAAGCCATGCATTAACAAGAAAACCTCATTTATAGTCTTTTATACCTTCAAAAGC
255 ACATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGC
1102872 CTTATTACTCCGTTTAAATGGT
320 CTTATTACTCCGTTTAAATGGT
* ** ** *
1102894 TTTATATTCTCATTTTTCTTTTTAAGTTGAATTTTTTTACATTTTTTGAAAAAACAGATTATAAT
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAAT
* * *
1102959 TGAATGTTTACCTCAGGAAACGTGAAGCAAAA-CCATCCATTGACACA-AAAAGTTCATATATAG
66 TGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACA-AGAAAAGTTCATTTATAG
* * *
1103022 CTC-CTCATGCCTTCGATAGTATTATTACTCGCTTTTAATAATTTTATAATTTCGTAATTGATTT
130 -TCACTCATGCCTTCGAAAGT-TTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATTT
* * * *
1103086 TAAGTTAAATTTCTTTACATTTTTTGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAAACG
193 TAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAAACA
* * * * * * * * * *
1103151 TAAAGCAAATGCTATGGATTTACAAGAAAAGTTTAGTTATAGTCACTCACGCTTTTGAAAGCTTT
258 TGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTT
* *
1103216 ATTACTCGGTTTAAATAGT
323 ATTACTCCGTTTAAATGGT
* * * * ** *
1103235 TTCATAATCTTAAAATTGATTTTAAGTTGAATCTTTTTA-ATATTTTGGTAATGAA-ATATTATA
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT-TTTTGG-AAAAAACAGATTATA
* * * ** * * * *
1103298 ATTGAATGTTTGCCTTAGGAAACGTGAAGTGAAAGCCATCCATTGCCATGAAAAGTCCATTTGTA
64 ATTGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATA
* * * * * * *
1103363 GTCACTCATGCCTTTGAAAACTTTATTACTCACTTTAAACAGTTTTATGATCAT-ATAAATT-AT
129 GTCACTCATGCCTTCG-AAAGTTTATTACTCGCTTTTAATAGTTTTATAAT-TTCAT-AATTGAT
* * * * * * *
1103426 ATTAAGTTGAATTTTTTT-CAGTTTTCATTAAAATAGATGATAATTAGA-TGTTTAACTTAAGAA
191 TTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATT-GATTGTTTACCTTGAGAA
* * * * * *
1103489 ACATGAA-C-CAAGCCATCCATTGACAAGAAAAGTTCATTCATAGTCAATCATGGCTTTGAAAGC
255 ACATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGC
* *
1103552 CCTATTACT-CGCTTTAGATGGT
320 CTTATTACTCCG-TTTAAATGGT
* * * * **
1103574 TTTATAAAT-TTATAATTGATTATAAGTTGAATTTTTTTACTTTTTTTGTCAAAACAGATTATAA
1 TTTAT-AATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAA
* * * * * *** * *
1103638 ATGAATGTCTGCC-CCGAGAAACATAAAGTGGAAGCAATCCATTGACAAGAAAAG-TCTATTTAC
65 TTGAATGTTTACCTCAG-GAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTC-ATTTAT
* * * * * *
1103701 AGTCACTCATTCTTTC-ACAAGCATTATTACTCG-TTTTAAAAGGTTTTGTAATTTTATAATTGA
128 AGTCACTCATGCCTTCGA-AAG-TTTATTACTCGCTTTTAATA-GTTTTATAATTTCATAATTGA
* * * * * *
1103764 TTTTGAA-TTGAATCTTTTTATATTCTTCGTTAAAGCAGATTATAATTGAATGTTTA-CTTGGGA
190 TTTT-AAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGA
* * * * * * *
1103827 AACGTGACA-CAAAAGCCATCCATTAAAAAGAAAAGTCCATTTATACTCGCTCATG-TTTTCGAA
254 AACATGA-AGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTT-GAA
* *
1103890 AGCCTTATTACT-CGCTTTAAACGAT
317 AGCCTTATTACTCCG-TTTAAATGGT
* * * *
1103915 TTTATAATCTCATAATCGATTTTAAGTAGAATATTTTTACATTTTTGG-TAAAACAGATTATAAT
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAAT
* * * * ** *
1103979 TGAATGTCTACCTCAAGAAACATAAAGAAAAAGTCATCCATTGGTAAGAAAAGTGCATTTATAGT
66 TGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGT
* * * *
1104044 CAC-CTATTCCTTGGAAAGTTTTTTTACTCGC-TTTAAGTAGTTTTATAATCTCATAATTGATTT
131 CACTC-ATGCCTTCGAAAG-TTTATTACTCGCTTTTAA-TAGTTTTATAATTTCATAATTGATTT
* * * ** * * * * *
1104107 TAAGCTGAATTTTTTTATATTTTTTGTCCAAACAGATTATACTTGATTGTTT-GCGTAACAAATC
193 TAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAAA-C
* * * * * ** * **
1104171 ATGAAGCAAAAGCAATGCATTGATAAGAAACGTTTATTTATAGTTTCTTATGCCTTCAAAAGCCT
257 ATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCT
* * *
1104236 TTTTACTCTGTTTAAATAGT
322 TATTACTCCGTTTAAATGGT
* * * * * *
1104256 TTTATAATATCATAATTGATTTCAAGTTTAA-TTTTTTACATTTTTGGATAGAACATATTATAAT
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAAT
* ** * * * ** *
1104320 TGAATGTTTTCCTTGGGAAACATTAAGCAAAAGACATCTGTTGATAAGAAAAGTTCATTTATAGT
66 TGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGT
* * * * * ** * * *
1104385 CACTCGTGCCTTTGAAAGCCTTATTAGTTGCTTCAAATGGTTTTATAACTTCATAATTGACTTTA
131 CACTCATGCCTTCGAAAG-TTTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATTTTA
* * * * * * * *
1104450 AGTTAAATTTTTTTTACATTTTTGGTTAAAATAGATTATGATTGAATGTTTGCC-TAAGGAAACG
195 AGTTGAA-TTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGA-GAAACA
* * * * * * * ** ** * *
1104514 TGAAGCGACAGCCATCGC-TTGATATGAAAAGTCCCTTTATAGTGGCTCACCCCTTCGAAAGCTT
258 TGAAGCAAAAGCCAT-GCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCT
* **
1104578 TGTTACTCAC-TTTCAAA-AAT
322 TATTACTC-CGTTT-AAATGGT
********* * * * * * * *
1104598 TTTATANNNNNNNNNNTT-ATTTTAAGTTGAATTTCTTTTA-A-TTCT-CATTACAATAGGTGAT
1 TTTATA-ATCTCATAATTGATTTTAAGTTGAATTT-TTTTACATTTTTGGA-AAAAACAGATTAT
* * * * * ** * *
1104659 AATTGGATGGTTGCCTCAAGAAACTTGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCACTTAT
63 AATTGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTAT
* * * * * * * *
1104724 AGTCAATCATACCTACAAAAGCTCTATTACTTGCTTTAAATGGTTTTATAAATTT-ATAATTGAT
128 AGTCACTCATGCCTTCGAAAG-TTTATTACTCGCTTTTAATAGTTTTAT-AATTTCATAATTGAT
* * * * * * * ** * *
1104788 TATAAGTTGAATTTGTTTAC-TGTTTTAGGTAAAATAGATTATAATTGAATGTCTGTCGTAAGAA
191 TTTAAGTTGAATTTTTTTACAT-TTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAA
* * ** * ** *
1104852 GCAT-ACAACAAAAGCCACCCATTGACAACTAAAG-TCTATTTATAGTCACTCACG-CTTTCGAA
255 ACATGA-AGCAAAAGCCATGCATTAACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTT-GAA
* *
1104914 AGCATTATTACT-CGCTCTAAATGGT
317 AGCCTTATTACTCCG-TTTAAATGGT
* * * * * * ** *
1104939 TTTATAATCTTATAATTGATTTTGAGTTAAATTCTTTTACATATTTAGTTAAAACAAATTATAAT
1 TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAAT
* * * * * * **
1105004 TGAATGTCTACCT-TGAGACACGTGTAGGAAAAGCCATCCATTGGTAAG-AAA-TATCTATTTAT
66 TGAATGTTTACCTCAG-GAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGT-TC-ATTTAT
* * * * * * ** * * ** *
1105066 AGTTACTCATGCCTTCAAAAGCCTTATT-TTTGCATAAAATGGTTTTGTAACCTCATAACTGATT
128 AGTCACTCATGCCTTCGAAAG-TTTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATT
* * * * ** * * * * *
1105130 TTAAGTTGAATGTTTTCAGA-TTTTGGACAAAAAAAAATATAATTGAATGTTTACCAT-AGGAAA
192 TTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGA-GAAA
* * * * * * * *
1105193 CATGAAGCGAAAGCCATCCATTGATATGAAGAGTCCATTTTTAGTCACTCATGCCTTTGAAAGCC
256 CATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCC
*********
1105258 TTATTACT-CGCTNNNNNNNNN
321 TTATTACTCCG-TTTAAATGGT
* * ** *
1105279 NTTATAATCTCATAATTGATTTTAAGTT-AGA-TTTTTTAAATTTTTGGTTAAAACATATTATAA
1 TTTATAATCTCATAATTGATTTTAAGTTGA-ATTTTTTTACATTTTTGGAAAAAACAGATTATAA
* * ** * * * *
1105342 TTGAAAGTCTACCTTGGGAAACATGAAGCAAAAGTCATCCATCGACAAGAAAAGTCCATTTATAG
65 TTGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATAG
* * * ** * * *
1105407 TCACTCATGCCTTCAAAAGCATTATTACTCGCATGAAATGGTTTTATAATCTCATAACTGATTTT
130 TCACTCATGCCTTCGAAAG-TTTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATTTT
* * * * * * * *
1105472 AAG-TCAATTTTTTT-TATTTTTAGTTAAAACATATTACAATTGAATGTTTGCCTT-AGGAAACG
194 AAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGA-GAAACA
* ** * * * **
1105534 TGAAGCAAAAGCCATCCCCTGACACGAAAAGTCCATTTATAGTCGTTCATGCCTTTGAAAGCCTT
258 TGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTT
*
1105599 ATT-CTTCAC-TTTAAATGAT
323 ATTAC-TC-CGTTTAAATGGT
* * **
1105618 TTTATAATCTTAAAAATT-ATTTTAAGTTGAACTTTTTTT-CAATTTTT---ATTAA-A-A-TAT
1 TTTATAATC-TCATAATTGATTTTAAGTTGAA-TTTTTTTAC-ATTTTTGGAAAAAACAGATTAT
* * * ** *
1105675 -ATTACAAT-TTTA----A-GAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGGCCACTTA
63 AATT-GAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTA
* * ** * * *
1105733 TAGTCAATCACGCCTTCGAAAGCCCTGTTACTCAC-TTTAA-ACGATTTTATAACCTT-ATAAAT
127 TAGTCACTCATGCCTTCGAAAG-TTTATTACTCGCTTTTAATA-G-TTTTATAA-TTTCAT-AAT
* * *** ** * * * **
1105795 T-ATTTCAATTTGAATTTTTTTTGGTTGCT-GTTAAAATAGATGATAATTGGA-TGTTTGCCTCA
187 TGATTTTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATT-GATTGTTTACCTTG
** ** * * * * * * * * **
1105857 AGAAATGTGAAGTGAATGCTATCCATTGACAGGAAAGGTCCATTTATAATCACTC-TTACTTTCG
251 AGAAACATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTT-G
*
1105921 AAAACCTTATTACTCAC-TTTAAATGGT
315 AAAGCCTTATTACTC-CGTTTAAATGGT
* * *
1105948 TTTATAATCTCAAAATTGATTTT-AGATTGAATTTTTTTACATTTTTAGAAAAAATAGATTATAA
1 TTTATAATCTCATAATTGATTTTAAG-TTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAA
* * * * * * *
1106012 TTGAATCTTT-GCTCCAAGAAACTTGAAGCAAAAGCCAT-CATTTAACAAAAAAAGTTCATTTAT
65 TTGAATGTTTACCT-CAGGAAACATGAAGAAAAAGCCATCCA-TTGACAAGAAAAGTTCATTTAT
* * * * * * *
1106075 AGTCACTCATGCCTTCAAAAATATTATTAGTTGCTTTAAATTGTTTTATAATATCATAATTGATT
128 AGTCACTCATGCCTTCGAAAGT-TTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATT
* * * * ** *
1106140 TTAAGTTTAA--TTTTTACATTTTTAGTTAAAACATATTATAATTGAATGTTTTTC-TGGGAAAC
192 TTAAGTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAAAC
* * ** *
1106202 GTGAAGCAAAAGCCATCCATTGGCAAGAAAAG-TCTATTTATAGTCACTCATGCC-TTCAGAAGC
257 ATGAAGCAAAAGCCATGCATTAACAAGAAAAGTTC-ATTTATAGTCACTCATGCCTTTGA-AAGC
* ** * *
1106265 CATATTA-TTTGTATAAAACGGT
320 CTTATTACTCCGT-TTAAATGGT
* * ** * * * *
1106287 TTTGTAATCTCATAACTGATTTTAAGTTG-ATTCTTTTTATGTTTTGGGTAAAAACAAATTAGAA
1 TTTATAATCTCATAATTGATTTTAAGTTGAATT-TTTTTACATTTTTGGAAAAAACAGATTATAA
* ** * * * ** * * *
1106351 TTGATTGCCTGCCT-TGAGAAATATGAAGCCAAAGCCATCCATTAATAAGAAAAGTCCATTTATA
65 TTGAATGTTTACCTCAG-GAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATA
* * * ** * *
1106415 GTTACTCATGCGTTCGAAAGTATTATTACTCACTTGAAATGGTTTTATAATCTCATAATTGATTT
129 GTCACTCATGCCTTCGAAAGT-TTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATTT
* * * * * * **
1106480 TAAG-TCAATTTTTTTTTTTACA-TTTTCAGTTAAAACATATTACAATTCAATGTTTGCCTCAAG
193 TAAGTTGAA----TTTTTTTACATTTTTC-GTTAAAACAGATTATAATTGATTGTTTACCTTGAG
* * * * * * * * * * * *
1106543 AAACCTAAAGTTCAACA--CATCCATTGACATGAAAAATCCATTTGTAGTCATTCATACCTTCGA
253 AAACATGAAG--CAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGA
* * *
1106606 AAGCCTTATTACTCAGTCTAAACGGT
316 AAGCCTTATTACTCCGTTTAAATGGT
* *
1106632 TTTATAGTCTTGCA-AATT-TTTTTAAGTTG-ATTTTTTT-CATTTTT
1 TTTATAATC-T-CATAATTGATTTTAAGTTGAATTTTTTTACATTTTT
1106676 CATTAAAATA
Statistics
Matches: 2912, Mismatches: 713, Indels: 313
0.74 0.18 0.08
Matches are distributed among these distances:
328 4 0.00
329 111 0.04
330 124 0.04
331 7 0.00
332 3 0.00
333 1 0.00
334 7 0.00
335 11 0.00
336 7 0.00
337 2 0.00
338 32 0.01
339 651 0.22
340 433 0.15
341 833 0.29
342 473 0.16
343 74 0.03
344 45 0.02
345 78 0.03
346 10 0.00
347 6 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (341 bp):
TTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTGGAAAAAACAGATTATAAT
TGAATGTTTACCTCAGGAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTTCATTTATAGT
CACTCATGCCTTCGAAAGTTTATTACTCGCTTTTAATAGTTTTATAATTTCATAATTGATTTTAA
GTTGAATTTTTTTACATTTTTCGTTAAAACAGATTATAATTGATTGTTTACCTTGAGAAACATGA
AGCAAAAGCCATGCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAAAGCCTTATT
ACTCCGTTTAAATGGT
Found at i:1105756 original size:160 final size:160
Alignment explanation
Indices: 1105528--1105816 Score: 391
Period size: 160 Copynumber: 1.8 Consensus size: 160
1105518 TTTGCCTTAG
* * * * * ** * *
1105528 GAAACGTGAAGCAAAAGCCATCCCCTGACACGAAAAGTCCATTTATAGTCGTTCATGCCTTTGAA
1 GAAACATGAAGCAAAAGCCATCCACTGACAAGAAAAGGCCACTTATAGTCAATCACGCCTTCGAA
* * * *
1105593 AGCCTTATT-CTTCACTTTAAATGATTTTATAATCTTAAAAATTATTTTAAGTTGAACTTTTTTT
66 AGCCCTATTAC-TCACTTTAAACGATTTTATAACCTTAAAAATTATTTCAAGTTGAACTTTTTTT
1105657 CAATTTTTATTAAAATATATTACAATTTTAA
130 CAATTTTTATTAAAATATATTACAATTTTAA
* *
1105688 GAAACATGAAGCAAAAGCCATCGATTGACAAGAAAAGGCCACTTATAGTCAATCACGCCTTCGAA
1 GAAACATGAAGCAAAAGCCATCCACTGACAAGAAAAGGCCACTTATAGTCAATCACGCCTTCGAA
* * * *
1105753 AGCCCTGTTACTCACTTTAAACGATTTTATAACCTTATAAATTATTTCAATTTGAATTTTTTTT
66 AGCCCTATTACTCACTTTAAACGATTTTATAACCTTAAAAATTATTTCAAGTTGAACTTTTTTT
1105817 GGTTGCTGTT
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
160 108 0.99
161 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.36
Consensus pattern (160 bp):
GAAACATGAAGCAAAAGCCATCCACTGACAAGAAAAGGCCACTTATAGTCAATCACGCCTTCGAA
AGCCCTATTACTCACTTTAAACGATTTTATAACCTTAAAAATTATTTCAAGTTGAACTTTTTTTC
AATTTTTATTAAAATATATTACAATTTTAA
Found at i:1106958 original size:170 final size:168
Alignment explanation
Indices: 1106703--1107728 Score: 728
Period size: 170 Copynumber: 6.0 Consensus size: 168
1106693 ATTGGTTGTT
* * * * *
1106703 ATAACTGATTTTAAGTTTAA--TTTTTACATTTTGATTAAAACATATTATAATTGAATGTTT-TC
1 ATAATTGATTTTAAGTTAAATTTTTTTA-ATTTTTATTAAAACAGATTACAATTGAATGTTTATC
* * *
1106765 TTGAGAAATGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCAATCATGCCTT
65 TTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAATCATGCCTT
* *
1106830 TCAAAGCTCGATTACTCACTTTAAATGGTTTTATAAATTC
130 TCAAAGC-CTATTACTCACTTTAAATGATTTTATAAATTC
** * * *
1106870 ATAATTGATTTTAAGTTAAATTTTTTTCTTTTTTTTTCAAAACAGATTATAATTGAATGTTTTTC
1 ATAATTGATTTTAAGTTAAATTTTTTTAATTTTTATT-AAAACAGATTACAATTGAATGTTTATC
* * * * *
1106935 GTGAGAAATGTGAAGGC-AAAGCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCT
65 TTGAGAAACGTGAA-GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAATCATGCCT
* * * *
1106999 TTGAAAGCACTATTACTCTCTTGAAATGGTTTTAT-AATCTC
129 TTCAAAGC-CTATTACTCACTTTAAATGATTTTATAAAT-TC
* *
1107040 ATAATTGATTTTAAGTCAAATATTTTTTATATTTTTAATTAAAACAGATTACAATTAAATGTTTA
1 ATAATTGATTTTAAGTTAAAT-TTTTTTA-ATTTTT-ATTAAAACAGATTACAATTGAATGTTTA
* * * * * **
1107105 AC-TCAGGAAACGTGAAGCAAAATCTA-CGCACTGACACA-AAAAGTCCATTTATAGTCGCTCAT
63 TCTTGA-GAAACGTGAAGCAAAAGCCATC-CATTGACA-AGAAAAGTCCATTTATAGTCAATCAT
*
1107167 GCC-TTCGAAAGCCTTATT-CTACACTTTAAATGATTTTATAATCTTAC
125 GCCTTTC-AAAGCC-TATTACT-CACTTTAAATGATTTTATAA-ATT-C
* *
1107214 A-AATT-AGTTTT-AGTTAAACGTTTTTTTAATTTTCATTAAAATAGATTACAATT-AGATGTTT
1 ATAATTGA-TTTTAAGTTAAA--TTTTTTTAATTTTTATTAAAACAGATTACAATTGA-ATGTTT
* * *
1107275 ACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGATAAGAAAAG-CCTACTTATAGTCAATCATG
62 ATCTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC-ATTTATAGTCAATCATG
* * *
1107339 CCTTTGAAAGCCCTATTACTCGCTTTAAATGATTTTATAACCTT-
126 CCTTTCAAAG-CCTATTACTCACTTTAAATGATTTTATAA-ATTC
* ** ** ** * * * * * *
1107383 ATAAATT-ATTTCAAGTTGATTTTTTTTTGGTTGCTATGAAAATAGATGATAATTGGATGTTTAC
1 AT-AATTGATTTTAAGTT-AAATTTTTTTAATTTTTATTAAAACAGATTACAATTGAATGTTTAT
* * * * * **
1107447 CTCGAGAAACGTGAAGCGAATGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACTTTTG-CT
64 CTTGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAATCATGCCT
**********
1107511 TTCGAAAGCCTTATTACTCACTTTNNNNNNNNNNAT-AATCTC
129 TTC-AAAGCC-TATTACTCACTTTAAATGATTTTATAAAT-TC
* * * ** ** * * *
1107553 ATAATTAATTTTAAATTGAACTTTTTTTTGTTTTTAGCAAAAATAGATTATAATTGAATGTTTAC
1 ATAATTGATTTTAAGTT-AAATTTTTTTAATTTTTA-TTAAAACAGATTACAATTGAATGTTTAT
** * ** * *
1107618 CTCAAGAAAGGTGAAGCAAAAGCCATCTTTTGACCAA-AAAAGTACATTTATAGTCACTCATG-C
64 CTTGAGAAACGTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCCATTTATAGTCAATCATGCC
* ** ** *
1107681 GTTCGAAAGAATTATTACTTGCTTTAAATGGTTTTAT-AATATC
128 TTTC-AAAG-CCTATTACTCACTTTAAATGATTTTATAAAT-TC
1107724 ATAAT
1 ATAAT
1107729 GAGTGCTACT
Statistics
Matches: 690, Mismatches: 125, Indels: 84
0.77 0.14 0.09
Matches are distributed among these distances:
167 18 0.03
168 7 0.01
169 44 0.06
170 241 0.35
171 233 0.34
172 123 0.18
173 20 0.03
174 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (168 bp):
ATAATTGATTTTAAGTTAAATTTTTTTAATTTTTATTAAAACAGATTACAATTGAATGTTTATCT
TGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAATCATGCCTTT
CAAAGCCTATTACTCACTTTAAATGATTTTATAAATTC
Found at i:1107257 original size:571 final size:571
Alignment explanation
Indices: 1106130--1107259 Score: 1399
Period size: 571 Copynumber: 2.0 Consensus size: 571
1106120 TTATAATATC
* *
1106130 ATAATTGATTTTAAGTTTAATTTTTACATTTTTAGTTAAAACATATTATAATTGAATGTTTTTCT
1 ATAACTGATTTTAAGTTTAATTTTTACATTTTGAGTTAAAACATATTATAATTGAATGTTTTTCT
* *
1106195 GGGAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCACTCATGCCTTCA
66 GAGAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCAATCATGCCTTCA
* *** * *
1106260 GAAGCCATATTATTTGTATAAAACGGTTTTGTAATCTCATAACTGATTTTAAGTTGATTCTTTTT
131 GAAGCCAGATTATCACTATAAAACGGTTTTATAATCTCATAACTGATTTTAAGTTAATTCTTTTT
* *
1106325 ATGTTTTGGGTAAAAACAAATTAGAATTGATTGCCTGCCTTGAGAAATATGAAGCCAAAGCCATC
196 ATGTTTTGGGTAAAAACAAATTAGAATTGAATGCCTGCCGTGAGAAATATGAAGCCAAAGCCATC
* * * * *
1106390 CATTAATAAGAAAAGTCCATTTATAGTTACTCATGCGTTCGAAAGTATTATTACTCACTTGAAAT
261 CATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCACTATTACTCACTTGAAAT
* * * *
1106455 GGTTTTATAATCTCATAATTGATTTTAAGTCAATTTTTTTTTTTACATTTTCAGTTAAAACATAT
326 GGTTTTATAATCTCATAATTGATTTTAAGTCAA-TATATTTTTTACATTTTCAATTAAAACAGAT
* ** * * *
1106520 TACAATTCAATGTTTGCCTCAAGAAACCTAAAGTTCAACACATCCATTGACATGAAAAATCCATT
390 TACAATTAAATGTTTAACTCAAGAAACCTAAAG-TCAAAACATCCACTGACATCAAAAATCCATT
* * * * * *
1106585 TGTAGTCATTCATACCTTCGAAAGCCTTATTACTCAGTCTAAACGGTTTTATAGTCTTGCAAATT
454 TATAGTCACTCATACCTTCGAAAGCCTTATTACTCACTCTAAACGATTTTATAATCTTACAAATT
* * *
1106650 TTTTTAAGTTGATTTTTTTCATTTTTCATTAAAATAGATGATAATTGGTTGTT
519 GTTTTAAGTTAATTTTTTTCAATTTTCATTAAAATAGATGATAATTGGTTGTT
1106703 ATAACTGATTTTAAGTTTAATTTTTACATTTTGA-TTAAAACATATTATAATTGAATG-TTTTCT
1 ATAACTGATTTTAAGTTTAATTTTTACATTTTGAGTTAAAACATATTATAATTGAATGTTTTTC-
*
1106766 TGAGAAATGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCAATCATGCCTTT
65 TGAGAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCAATCATGCC-TT
* * *
1106831 CA-AAGCTC-GATTACTCACT-TTAAATGGTTTTATAAAT-TCATAATTGATTTTAAGTTAAATT
129 CAGAAGC-CAGATTA-TCACTATAAAACGGTTTTAT-AATCTCATAACTGATTTTAAGTT-AATT
* *** * * * ** ** * *
1106892 -TTTTTCT-TTTTTTTTCAAAACAGATTATAATTGAATGTTTTTCGTGAGAAATGTGAAGGCAAA
190 CTTTTTATGTTTTGGGTAAAAACAAATTAGAATTGAATGCCTGCCGTGAGAAATATGAAGCCAAA
* * * * *
1106955 GCCATTCATTGACAAGAAAAGTCCATTTATAGTCACTTATGCCTTTGAAAGCACTATTACTCTCT
255 GCCATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCACTATTACTCACT
* *
1107020 TGAAATGGTTTTATAATCTCATAATTGATTTTAAGTCAA-ATATTTTTTATATTTTTAATTAAAA
320 TGAAATGGTTTTATAATCTCATAATTGATTTTAAGTCAATATATTTTTTACATTTTCAATTAAAA
* * *
1107084 CAGATTACAATTAAATGTTTAACTCAGGAAACGTGAAG-CAAAATC-TACGCACTGACA-CAAAA
385 CAGATTACAATTAAATGTTTAACTCAAGAAACCTAAAGTCAAAA-CAT-C-CACTGACATCAAAA
* * * *
1107146 AGTCCATTTATAGTCGCTCATGCCTTCGAAAGCCTTATT-CTACACTTTAAATGATTTTATAATC
447 A-TCCATTTATAGTCACTCATACCTTCGAAAGCCTTATTACT-CACTCTAAACGATTTTATAATC
1107210 TTACAAATTAGTTTT-AGTTAAACGTTTTTTT-AATTTTCATTAAAATAGAT
510 TTACAAATT-GTTTTAAGTT-AA--TTTTTTTCAATTTTCATTAAAATAGAT
1107260 TACAATTAGA
Statistics
Matches: 475, Mismatches: 67, Indels: 32
0.83 0.12 0.06
Matches are distributed among these distances:
567 5 0.01
568 9 0.02
569 120 0.25
570 5 0.01
571 159 0.33
572 132 0.28
573 45 0.09
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (571 bp):
ATAACTGATTTTAAGTTTAATTTTTACATTTTGAGTTAAAACATATTATAATTGAATGTTTTTCT
GAGAAACGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTATTTATAGTCAATCATGCCTTCA
GAAGCCAGATTATCACTATAAAACGGTTTTATAATCTCATAACTGATTTTAAGTTAATTCTTTTT
ATGTTTTGGGTAAAAACAAATTAGAATTGAATGCCTGCCGTGAGAAATATGAAGCCAAAGCCATC
CATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCACTATTACTCACTTGAAAT
GGTTTTATAATCTCATAATTGATTTTAAGTCAATATATTTTTTACATTTTCAATTAAAACAGATT
ACAATTAAATGTTTAACTCAAGAAACCTAAAGTCAAAACATCCACTGACATCAAAAATCCATTTA
TAGTCACTCATACCTTCGAAAGCCTTATTACTCACTCTAAACGATTTTATAATCTTACAAATTGT
TTTAAGTTAATTTTTTTCAATTTTCATTAAAATAGATGATAATTGGTTGTT
Found at i:1107728 original size:171 final size:170
Alignment explanation
Indices: 1106746--1107728 Score: 813
Period size: 171 Copynumber: 5.8 Consensus size: 170
1106736 ATTAAAACAT
* * * * *
1106746 ATTATAATTGAATGTTT-TCTTGAGAAATGTGAAGCAAAAGCCATCCATTGGCAAGAAAAGTCTA
1 ATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA
* *
1106810 TTTATAGTCAATCATGCCTTTC-AAAG-CTCGATTACTCACTTTAAATGGTTTTATAAAT-TCAT
66 TTTATAGTCACTCATGCC-TTCGAAAGCCT-TATTACTCACTTTAAATGGTTTTAT-AATCTCAT
* * ** *
1106872 AATTGATTTTAAGTT-AAATTTTTTTCTTTTTTTTTCAAAACAG
128 AATTAATTTTAAGTTGAAATTTTTTT-TATTTTTAGCAAAATAG
* * * *
1106915 ATTATAATTGAATGTTTTTCGT-GAGAAATGTGAAGGC-AAAGCCATTCATTGACAAGAAAAGTC
1 ATTATAATTGAATG-TTTACCTCGAGAAACGTGAA-GCAAAAGCCATCCATTGACAAGAAAAGTC
* * * *
1106978 CATTTATAGTCACTTATGCCTTTGAAAGCAC-TATTACTCTCTTGAAATGGTTTTATAATCTCAT
64 CATTTATAGTCACTCATGCCTTCGAAAGC-CTTATTACTCACTTTAAATGGTTTTATAATCTCAT
* * ** *
1107042 AATTGATTTTAAG-TCAAATATTTTTTATATTTTTAATTAAAACAG
128 AATTAATTTTAAGTTGAAAT-TTTTTT-TATTTTT-AGCAAAATAG
* * * * * *
1107087 ATTACAATTAAATGTTTAACTC-AGGAAACGTGAAGCAAAATCTA-CGCACTGACACA-AAAAGT
1 ATTATAATTGAATGTTTACCTCGA-GAAACGTGAAGCAAAAGCCATC-CATTGACA-AGAAAAGT
* *
1107149 CCATTTATAGTCGCTCATGCCTTCGAAAGCCTTATT-CTACACTTTAAATGATTTTATAATCTTA
63 CCATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACT-CACTTTAAATGGTTTTATAATC-T-
* * * **
1107213 CA-AATTAGTTTT-AGTT-AAACGTTTTTTTAATTTTCATTAAAATAG
125 CATAATTAATTTTAAGTTGAAA--TTTTTTTTATTTTTAGCAAAATAG
* * *
1107258 ATTACAATT-AGATGTTTACCTTGAGAAACGTGAAGCAAAAGCCATCCATTGATAAGAAAAG-CC
1 ATTATAATTGA-ATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCC
* * * * * * * *
1107321 TACTTATAGTCAATCATGCCTTTGAAAGCCCTATTACTCGCTTTAAATGATTTTATAACCTTATA
65 -ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCAT-
* * * **
1107386 AATT-ATTTCAAGTTG-ATTTTTTTTTGGTTGCTATG-AAAATAG
128 AATTAATTTTAAGTTGAAATTTTTTTT-ATTTTTA-GCAAAATAG
* * * * *
1107428 ATGATAATTGGATGTTTACCTCGAGAAACGTGAAGCGAATGCCATCCATTGACAAGAAAGGTCCA
1 ATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA
** * **********
1107493 TTTATAGTCACTTTTGCTTTCGAAAGCCTTATTACTCACTTTNNNNNNNNNNATAATCTCATAAT
66 TTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
* * *
1107558 TAATTTTAAATTGAACTTTTTTTTGTTTTTAGCAAAAATAG
131 TAATTTTAAGTTGAAATTTTTTTTATTTTTAGC-AAAATAG
* * ** *
1107599 ATTATAATTGAATGTTTACCTCAAGAAAGGTGAAGCAAAAGCCATCTTTTGACCAA-AAAAGTAC
1 ATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGA-CAAGAAAAGTCC
* ** ** *
1107663 ATTTATAGTCACTCATGCGTTCGAAAGAATTATTACTTGCTTTAAATGGTTTTATAATATCATAA
65 ATTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAA
1107728 T
130 T
1107729 GAGTGCTACT
Statistics
Matches: 653, Mismatches: 120, Indels: 80
0.77 0.14 0.09
Matches are distributed among these distances:
169 33 0.05
170 230 0.35
171 255 0.39
172 115 0.18
173 17 0.03
174 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.37
Consensus pattern (170 bp):
ATTATAATTGAATGTTTACCTCGAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA
TTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTCATAAT
TAATTTTAAGTTGAAATTTTTTTTATTTTTAGCAAAATAG
Found at i:1112526 original size:36 final size:35
Alignment explanation
Indices: 1112434--1112605 Score: 197
Period size: 36 Copynumber: 4.9 Consensus size: 35
1112424 TTTCAAGCAC
*
1112434 TTGATTAAAATTATTTAATTAAG---TTGTGCCTAA
1 TTGATT-AAATTATTTAATTAAGTTATTGGGCCTAA
* **
1112467 TTCATTAAATTATTTAATTAAGTTATTGAACCTAA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
*
1112502 TTGATTAAATTTATTTAATCAAGTTATTGGGCCTAA
1 TTGATTAAA-TTATTTAATTAAGTTATTGGGCCTAA
* * *
1112538 TTGATTAAAATTGTTTAATCAAGTTATTGGGCTTAA
1 TTGATT-AAATTATTTAATTAAGTTATTGGGCCTAA
* *
1112574 TTGATCAAATTGTTTAATTAAGTTAATTGGGC
1 TTGATTAAATTATTTAATTAAGTT-ATTGGGC
1112606 TTCTTAAGGA
Statistics
Matches: 122, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
32 16 0.13
33 5 0.04
35 33 0.27
36 65 0.53
37 3 0.02
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (35 bp):
TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
Found at i:1114104 original size:14 final size:14
Alignment explanation
Indices: 1114085--1114111 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1114075 ATAACTGAAT
1114085 TAATTAACTAAAAA
1 TAATTAACTAAAAA
1114099 TAATTAACTAAAA
1 TAATTAACTAAAA
1114112 TTTAAACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATTAACTAAAAA
Found at i:1121632 original size:15 final size:15
Alignment explanation
Indices: 1121612--1121642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1121602 CTTTATCCAT
*
1121612 GAGTTTATTTATAAA
1 GAGTTTATTTACAAA
1121627 GAGTTTATTTACAAA
1 GAGTTTATTTACAAA
1121642 G
1 G
1121643 TCCTCGGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (15 bp):
GAGTTTATTTACAAA
Found at i:1124133 original size:33 final size:33
Alignment explanation
Indices: 1124096--1124163 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
1124086 TTAAAAAAAA
* *
1124096 TTATAACACTCCTAAACTTAAAGCATACTTTCC
1 TTATAACACTCCCAAACTTAAAGCATACTCTCC
* *
1124129 TTATAGCACTCCCAAACTTAAAGTATACTCTCC
1 TTATAACACTCCCAAACTTAAAGCATACTCTCC
1124162 TT
1 TT
1124164 TGTACAACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (33 bp):
TTATAACACTCCCAAACTTAAAGCATACTCTCC
Found at i:1124845 original size:19 final size:20
Alignment explanation
Indices: 1124818--1124863 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
1124808 ATATTTTTTG
*
1124818 AACACAAATAAAACATGCAA
1 AACATAAATAAAACATGCAA
*
1124838 AA-ATAAATAAAACATGGAA
1 AACATAAATAAAACATGCAA
1124857 AACATAA
1 AACATAA
1124864 CTTAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (20 bp):
AACATAAATAAAACATGCAA
Found at i:1125624 original size:18 final size:18
Alignment explanation
Indices: 1125598--1125645 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
1125588 GTGATAGGTA
*
1125598 AAAAGAATATTCTTA-AAT
1 AAAATAATATT-TTAGAAT
1125616 AAAATAATATTTTATGAAT
1 AAAATAATATTTTA-GAAT
*
1125635 AAAATATTATT
1 AAAATAATATT
1125646 ATAATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 3 0.12
18 10 0.38
19 13 0.50
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (18 bp):
AAAATAATATTTTAGAAT
Found at i:1128878 original size:21 final size:22
Alignment explanation
Indices: 1128852--1128892 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1128842 TAAGTGAAAA
*
1128852 ACTTTT-TTTTTTTTTCTTTTG
1 ACTTTTATTTCTTTTTCTTTTG
1128873 ACTTTTATTTCTTTTTCTTT
1 ACTTTTATTTCTTTTTCTTT
1128893 CCACTTAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.07, C:0.12, G:0.02, T:0.78
Consensus pattern (22 bp):
ACTTTTATTTCTTTTTCTTTTG
Found at i:1128898 original size:22 final size:21
Alignment explanation
Indices: 1128852--1128898 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
1128842 TAAGTGAAAA
* **
1128852 ACTTTTTTTTTTTTTCTTTTG
1 ACTTTTTTTCTTTTTCTTTCC
1128873 ACTTTTATTTCTTTTTCTTTCC
1 ACTTTT-TTTCTTTTTCTTTCC
1128895 ACTT
1 ACTT
1128899 AGCAGCCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.09, C:0.17, G:0.02, T:0.72
Consensus pattern (21 bp):
ACTTTTTTTCTTTTTCTTTCC
Found at i:1150316 original size:30 final size:28
Alignment explanation
Indices: 1150220--1150354 Score: 128
Period size: 28 Copynumber: 4.7 Consensus size: 28
1150210 AAACTTTAAC
* * *
1150220 ATGTTTGTTTTAATTTAGACAAAAAAAC
1 ATGTTTGTCTTAATTTAGACAAGAAAAT
*
1150248 ATGTTTGGTCTTAATTTAGACAAGAGAAT
1 ATGTTT-GTCTTAATTTAGACAAGAAAAT
*
1150277 ATGTTTGTCTTAATTTAGGATAAGAAAAAT
1 ATGTTTGTCTTAATTTA-GACAAG-AAAAT
** * *
1150307 ACT-TTTGTCTTAATCCAGGCAAGAAAAC
1 A-TGTTTGTCTTAATTTAGACAAGAAAAT
* *
1150335 ATATTTGTCTCAATTTAGAC
1 ATGTTTGTCTTAATTTAGAC
1150355 GAGATAAAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
27 1 0.01
28 35 0.40
29 33 0.38
30 17 0.20
31 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (28 bp):
ATGTTTGTCTTAATTTAGACAAGAAAAT
Found at i:1150342 original size:28 final size:28
Alignment explanation
Indices: 1150217--1150352 Score: 112
Period size: 29 Copynumber: 4.8 Consensus size: 28
1150207 TGGAAACTTT
* * * *
1150217 AACATGTTTGTTTTAATTTAGACAAAAA
1 AACATATTTGTCTTAATTTAGGCAAGAA
* * *
1150245 AACATGTTTGGTCTTAATTTAGACAAGAG
1 AACATATTT-GTCTTAATTTAGGCAAGAA
* * *
1150274 AATATGTTTGTCTTAATTTAGGATAAGAA
1 AACATATTTGTCTTAATTTAGG-CAAGAA
**
1150303 AA-ATACTTTTGTCTTAATCCAGGCAAGAA
1 AACATA--TTTGTCTTAATTTAGGCAAGAA
*
1150332 AACATATTTGTCTCAATTTAG
1 AACATATTTGTCTTAATTTAG
1150353 ACGAGATAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
28 35 0.39
29 37 0.42
30 17 0.19
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (28 bp):
AACATATTTGTCTTAATTTAGGCAAGAA
Found at i:1160815 original size:18 final size:19
Alignment explanation
Indices: 1160792--1160829 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1160782 AGTGGCTTTA
1160792 ACATGTTT-GTCTTAATTT
1 ACATGTTTGGTCTTAATTT
1160810 ACATGTTTGGTCTTAATTT
1 ACATGTTTGGTCTTAATTT
1160829 A
1 A
1160830 GACAAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.53
Consensus pattern (19 bp):
ACATGTTTGGTCTTAATTT
Found at i:1160882 original size:30 final size:28
Alignment explanation
Indices: 1160812--1160884 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
1160802 CTTAATTTAC
*
1160812 ATGTTTGGTCTTAATTTAGACAAGAAAAT
1 ATGTTT-GTCTTAATTTAAACAAGAAAAT
*
1160841 ATGTTTATCTTAATTTAAAACAAGAAAAAT
1 ATGTTTGTCTTAATTT-AAACAAG-AAAAT
1160871 AAT-TTTGTCTTAAT
1 -ATGTTTGTCTTAAT
1160885 CTAGATAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 9 0.24
29 12 0.32
30 15 0.39
31 2 0.05
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (28 bp):
ATGTTTGTCTTAATTTAAACAAGAAAAT
Found at i:1160894 original size:29 final size:29
Alignment explanation
Indices: 1160812--1160897 Score: 95
Period size: 29 Copynumber: 2.9 Consensus size: 29
1160802 CTTAATTTAC
1160812 ATGTTTGGTCTTAATTTAGACAAG-AAAAT
1 ATGTTT-GTCTTAATTTAGACAAGAAAAAT
* *
1160841 ATGTTTATCTTAATTTAAAACAAGAAAAAT
1 ATGTTTGTCTTAATTT-AGACAAGAAAAAT
* *
1160871 AAT-TTTGTCTTAATCTAGATAAGAAAA
1 -ATGTTTGTCTTAATTTAGACAAGAAAA
1160898 CGTATTTGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 9 0.19
29 21 0.44
30 16 0.33
31 2 0.04
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (29 bp):
ATGTTTGTCTTAATTTAGACAAGAAAAAT
Found at i:1162180 original size:68 final size:68
Alignment explanation
Indices: 1162073--1162200 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
1162063 GATGAATGCC
* * * * * *
1162073 ATAAGATTATGTATATGATGTAAGTTCTATATACCATATG-AGATTATTAAGTATGCATGATGTA
1 ATAAGATTATGGATATGATGTAAATTCCATACACCATATGAAG-TGATTAAGTAAGCATGATGTA
1162137 TACT
65 TACT
* * *
1162141 ATAAGATTATGGATGTGATGTAAATTCCCTACACTATATGAAGTGATTAAGTAAGCATGA
1 ATAAGATTATGGATATGATGTAAATTCCATACACCATATGAAGTGATTAAGTAAGCATGA
1162201 CAAATGCCAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (68 bp):
ATAAGATTATGGATATGATGTAAATTCCATACACCATATGAAGTGATTAAGTAAGCATGATGTAT
ACT
Found at i:1162870 original size:20 final size:19
Alignment explanation
Indices: 1162802--1162871 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 19
1162792 TTTCTATGTG
*
1162802 AAATGTATTGATACATTTCA
1 AAATGTATCGATACA-TTCA
* * *
1162822 CCAATGTATCGATAAATGCTTA
1 -AAATGTATCGATACAT--TCA
1162844 AAA-GTATCGATACATTCA
1 AAATGTATCGATACATTCA
1162862 ATAATGTATC
1 A-AATGTATC
1162872 AATAGATATG
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
18 3 0.08
19 2 0.05
20 17 0.45
21 14 0.37
22 2 0.05
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
AAATGTATCGATACATTCA
Found at i:1163179 original size:15 final size:15
Alignment explanation
Indices: 1163159--1163188 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1163149 CTGATAGTAG
1163159 CCAATGTTGCAAATA
1 CCAATGTTGCAAATA
1163174 CCAATGTTGCAAATA
1 CCAATGTTGCAAATA
1163189 TAGCGCTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (15 bp):
CCAATGTTGCAAATA
Found at i:1173134 original size:21 final size:21
Alignment explanation
Indices: 1173110--1173228 Score: 62
Period size: 21 Copynumber: 5.3 Consensus size: 21
1173100 TAGGATATAA
1173110 ATTTAAATTTAATTTGTTTAT
1 ATTTAAATTTAATTTGTTTAT
** *
1173131 ATTTAAATAAAAATTATCTATCCATTAT
1 ATTTAAAT-TTAATT-TGT-T----TAT
*
1173159 ATTTAAATTTAATTTGTTTAA
1 ATTTAAATTTAATTTGTTTAT
* **
1173180 ATTTAAA--TAAGGGTTAATTAT
1 ATTTAAATTTAA--TTTGTTTAT
* *
1173201 ATTTAAATTTGATTTGTTTAA
1 ATTTAAATTTAATTTGTTTAT
1173222 ATTTAAA
1 ATTTAAA
1173229 AATAATATCC
Statistics
Matches: 71, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
19 3 0.04
21 41 0.58
22 4 0.06
23 4 0.06
24 1 0.01
25 1 0.01
26 2 0.03
27 4 0.06
28 11 0.15
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (21 bp):
ATTTAAATTTAATTTGTTTAT
Found at i:1180753 original size:31 final size:31
Alignment explanation
Indices: 1180711--1180773 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
1180701 TTTAAGTGGA
*
1180711 AGAAAATCATGGTTTAGCAAATAGCTATGGT
1 AGAAAACCATGGTTTAGCAAATAGCTATGGT
1180742 AGAAAACCATGGTTTAGCAAATAGCTATGGT
1 AGAAAACCATGGTTTAGCAAATAGCTATGGT
1180773 A
1 A
1180774 AATAAAGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (31 bp):
AGAAAACCATGGTTTAGCAAATAGCTATGGT
Found at i:1182592 original size:27 final size:25
Alignment explanation
Indices: 1182562--1182619 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
1182552 ACATGGTTGG
1182562 GGCCATGGTCTATGATATATGTGGCAA
1 GGCCATGG-CT-TGATATATGTGGCAA
* * * *
1182589 GGCCACGGGTTGTTATATGTGGCTA
1 GGCCATGGCTTGATATATGTGGCAA
1182614 GGCCAT
1 GGCCAT
1182620 AAGTGGTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 18 0.69
26 1 0.04
27 7 0.27
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (25 bp):
GGCCATGGCTTGATATATGTGGCAA
Found at i:1195407 original size:23 final size:23
Alignment explanation
Indices: 1195381--1195434 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
1195371 CTAGGCCGAA
*
1195381 CCTTGTCTTTTTTTCTT-CTTTCT
1 CCTT-TCTTTCTTTCTTCCTTTCT
1195404 CCTTTCTTTCTTTCTTCCTTTCT
1 CCTTTCTTTCTTTCTTCCTTTCT
*
1195427 CTTTTCTT
1 CCTTTCTT
1195435 CCATTCTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.69
Consensus pattern (23 bp):
CCTTTCTTTCTTTCTTCCTTTCT
Found at i:1195432 original size:15 final size:16
Alignment explanation
Indices: 1195392--1195453 Score: 67
Period size: 15 Copynumber: 4.0 Consensus size: 16
1195382 CTTGTCTTTT
1195392 TTTCT-TCTTTC-TCC
1 TTTCTCTCTTTCTTCC
*
1195406 TTTCTTTCTTTCTTCC
1 TTTCTCTCTTTCTTCC
1195422 TTTCTCT-TTTCTTCC
1 TTTCTCTCTTTCTTCC
* *
1195437 ATTCTCACTTTGCTTCC
1 TTTCTCTCTTT-CTTCC
1195454 AAGCCGATCC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
14 5 0.12
15 19 0.46
16 12 0.29
17 5 0.12
ACGTcount: A:0.03, C:0.34, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTCTCTCTTTCTTCC
Found at i:1195441 original size:23 final size:22
Alignment explanation
Indices: 1195393--1195441 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
1195383 TTGTCTTTTT
* *
1195393 TTCTTCTTTCTCCTTTCTTTCT
1 TTCTTCTTTCTCCTTTCTTCCA
*
1195415 TTCTTCCTTTCTCTTTTCTTCCA
1 TTCTT-CTTTCTCCTTTCTTCCA
1195438 TTCT
1 TTCT
1195442 CACTTTGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (22 bp):
TTCTTCTTTCTCCTTTCTTCCA
Found at i:1199765 original size:12 final size:12
Alignment explanation
Indices: 1199748--1199772 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1199738 TTTAATGATG
1199748 TGTTCTTTTTCT
1 TGTTCTTTTTCT
1199760 TGTTCTTTTTCT
1 TGTTCTTTTTCT
1199772 T
1 T
1199773 TCTCATTCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (12 bp):
TGTTCTTTTTCT
Found at i:1204136 original size:25 final size:25
Alignment explanation
Indices: 1204106--1204157 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1204096 TGTTAACATC
1204106 AATTACTTGACATGCATGGGAATCA
1 AATTACTTGACATGCATGGGAATCA
1204131 AATTACTTGACATGCATGGGAATCA
1 AATTACTTGACATGCATGGGAATCA
1204156 AA
1 AA
1204158 GCATACTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (25 bp):
AATTACTTGACATGCATGGGAATCA
Found at i:1205580 original size:12 final size:12
Alignment explanation
Indices: 1205565--1205601 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
1205555 TTGAGGAGAA
1205565 AGAGGCAGCAAG
1 AGAGGCAGCAAG
1205577 AGAGGCAGCAA-
1 AGAGGCAGCAAG
1205588 AGGAGGCAGCAAG
1 A-GAGGCAGCAAG
1205601 A
1 A
1205602 AACTATTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.41, T:0.00
Consensus pattern (12 bp):
AGAGGCAGCAAG
Found at i:1209335 original size:47 final size:47
Alignment explanation
Indices: 1209275--1209394 Score: 213
Period size: 47 Copynumber: 2.6 Consensus size: 47
1209265 TTTTGCATAC
*
1209275 AATTTTACTTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
1 AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
1209322 AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
1 AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
* *
1209369 AATTTTACCTAAAAAATCAGTAAAAT
1 AATTTTACCTAACAAATAAGTAAAAT
1209395 TATACAAAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (47 bp):
AATTTTACCTAACAAATAAGTAAAATAATTACATCATGCATTTTATA
Found at i:1209864 original size:40 final size:40
Alignment explanation
Indices: 1209820--1209896 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
1209810 CAAATAAAAC
* * *
1209820 TTGGCATAATGTACAAGACCGGATATCACTTTTGCGGCAT
1 TTGGCACAACGTACAAGACCAGATATCACTTTTGCGGCAT
*
1209860 TTGGCACAACGTACAAGACCATATATCACTTTTGCGG
1 TTGGCACAACGTACAAGACCAGATATCACTTTTGCGG
1209897 TAAATTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGGCACAACGTACAAGACCAGATATCACTTTTGCGGCAT
Found at i:1210792 original size:139 final size:140
Alignment explanation
Indices: 1210536--1210809 Score: 318
Period size: 139 Copynumber: 2.0 Consensus size: 140
1210526 AAATGGCAAT
* * * *
1210536 ATGGCTCAATTGAAAGGGATCAATTATGGATTATACACTGTACTCTTTTTTCCTTCTGATCGATT
1 ATGGCTCAATTGAAAGGGAGCAATTATGGACTATACACTATACTCTTTTTTCCTTCTAATCGATT
* * * * * *
1210601 TTTGTCCCATTGGGTCTTTCCAGCTTAAGGCTTTTAATGAGGCAGTGCAATGGACATTCAA-AGG
66 TTTGTCCAATTAGGTCTTTCCAACTTAAGGCTTTTAATAAGGCAATACAATGGACATTCAAGAGG
1210665 AAGTGGTAAC
131 AAGTGGTAAC
** * ** * * *
1210675 ATGGCTCAATTGAGGGGGAGCAATTATGGACTGTGGACTATACTTTTTTTTCCTTTTAATTGATT
1 ATGGCTCAATTGAAAGGGAGCAATTATGGACTATACACTATACTCTTTTTTCCTTCTAATCGATT
* ** *
1210740 TTTGTCCAATTAGGT-TTCTTCAACTTAAGTTTTTTAATAAGGCAATATAATGGACATTCAAGAG
66 TTTGTCCAATTAGGTCTT-TCCAACTTAAGGCTTTTAATAAGGCAATACAATGGACATTCAAGAG
*
1210804 GGAGTG
130 GAAGTG
1210810 TTATGAATAT
Statistics
Matches: 110, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
138 2 0.02
139 101 0.92
140 7 0.06
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (140 bp):
ATGGCTCAATTGAAAGGGAGCAATTATGGACTATACACTATACTCTTTTTTCCTTCTAATCGATT
TTTGTCCAATTAGGTCTTTCCAACTTAAGGCTTTTAATAAGGCAATACAATGGACATTCAAGAGG
AAGTGGTAAC
Found at i:1217570 original size:40 final size:40
Alignment explanation
Indices: 1217526--1217622 Score: 142
Period size: 40 Copynumber: 2.4 Consensus size: 40
1217516 TTAATCAAAT
*
1217526 TCACCACATTAGACATTCACTA-CTTAATACTTACTCTAAA
1 TCACCACATTAGACATTCA-TATCATAATACTTACTCTAAA
* * *
1217566 TCACCACCTTCGACATTCATATCATAATACTTAGTCTAAA
1 TCACCACATTAGACATTCATATCATAATACTTACTCTAAA
1217606 TCACCACATTAGACATT
1 TCACCACATTAGACATT
1217623 GAATCAAGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.32
Consensus pattern (40 bp):
TCACCACATTAGACATTCATATCATAATACTTACTCTAAA
Found at i:1227562 original size:11 final size:11
Alignment explanation
Indices: 1227527--1227577 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
1227517 AGCTTTACGT
1227527 TTTAATTATTTA
1 TTTAATT-TTTA
* *
1227539 TTTTAAATGTTA
1 -TTTAATTTTTA
1227551 TTTAATTTTTA
1 TTTAATTTTTA
*
1227562 TTTTATTTTTA
1 TTTAATTTTTA
1227573 TTTAA
1 TTTAA
1227578 AAATATAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
11 23 0.72
12 3 0.09
13 6 0.19
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (11 bp):
TTTAATTTTTA
Found at i:1227894 original size:21 final size:22
Alignment explanation
Indices: 1227852--1227894 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1227842 AACTTGAAAT
*
1227852 AAAATTATAAAAATTAATACAA
1 AAAATTATAAAAATGAATACAA
*
1227874 AAAATTATAAAAGTGAA-ACAA
1 AAAATTATAAAAATGAATACAA
1227895 GTATTCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (22 bp):
AAAATTATAAAAATGAATACAA
Found at i:1236613 original size:43 final size:43
Alignment explanation
Indices: 1236565--1236647 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
1236555 CATTAGACTT
* *
1236565 GAGAAGAACCAACACCTCATGGAGAAAGAATTGATTCTCACGC
1 GAGAAGAACCAACAACTCATAGAGAAAGAATTGATTCTCACGC
* * *
1236608 GAGAAGACCCAACAAGTCGTAGAGAAAGAATTGATTCTCA
1 GAGAAGAACCAACAACTCATAGAGAAAGAATTGATTCTCA
1236648 ATTGCAAGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (43 bp):
GAGAAGAACCAACAACTCATAGAGAAAGAATTGATTCTCACGC
Found at i:1238276 original size:51 final size:50
Alignment explanation
Indices: 1238217--1238323 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 50
1238207 GCAAATGATG
* * *
1238217 TATGTAATGTTTATGTATGTTTAATGAGTAAGACCCAATTGTTTTAAGATT
1 TATGTAATGTTTATGCATGTTTAATGAGCAAGACCCAATTG-CTTAAGATT
* * * *
1238268 TATGTAATGTTTTTGCATGTTTGATGGGCAAGACCCAATTGCTTAAGGTT
1 TATGTAATGTTTATGCATGTTTAATGAGCAAGACCCAATTGCTTAAGATT
1238318 TATGTA
1 TATGTA
1238324 TTCAAGTAGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 13 0.27
51 36 0.73
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (50 bp):
TATGTAATGTTTATGCATGTTTAATGAGCAAGACCCAATTGCTTAAGATT
Found at i:1242008 original size:14 final size:14
Alignment explanation
Indices: 1241983--1242037 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
1241973 ATAACAAAGT
1241983 AAAAGAGAAAAGAAG
1 AAAAGAG-AAAGAAG
*
1241998 AAAGGAGAAAGAAG
1 AAAAGAGAAAGAAG
*
1242012 AAAATAGAAAGAAG
1 AAAAGAGAAAGAAG
*
1242026 AAAAAAGAAAGA
1 AAAAGAGAAAGA
1242038 GTTGAGTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 30 0.83
15 6 0.17
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (14 bp):
AAAAGAGAAAGAAG
Found at i:1242008 original size:21 final size:21
Alignment explanation
Indices: 1241984--1242035 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
1241974 TAACAAAGTA
*
1241984 AAAG-AGAAAAGAAGAAAGGAG
1 AAAGAAGAAAA-AAGAAAGAAG
*
1242005 AAAGAAGAAAATAGAAAGAAG
1 AAAGAAGAAAAAAGAAAGAAG
*
1242026 AAAAAAGAAA
1 AAAGAAGAAA
1242036 GAGTTGAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (21 bp):
AAAGAAGAAAAAAGAAAGAAG
Found at i:1243126 original size:2 final size:2
Alignment explanation
Indices: 1243087--1243116 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1243077 ATTGCTTTGA
1243087 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1243117 AGCTATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1245366 original size:71 final size:70
Alignment explanation
Indices: 1245264--1245450 Score: 196
Period size: 71 Copynumber: 2.6 Consensus size: 70
1245254 NNNNNNTCAC
* ** * *
1245264 AAGATTGACTACAGAGGGTTTATAGTTGATCTTGGGCCAGAATGTCCAT-TTTTAACTCATTTTT
1 AAGATTGACTATAGAGGGACTATAGTCGATCTTGGACCAGAATGTCCATATTTT-AC-CATTTTT
1245328 CCTTCAT
64 CCTTCAT
* ** ** *
1245335 AAGATCGACTATAGAGGGACTATAGTCGATCTTGGACTGGAATGTTTATATTTTTCCATTTTTCC
1 AAGATTGACTATAGAGGGACTATAGTCGATCTTGGACCAGAATGTCCATATTTTACCATTTTTCC
1245400 TTCAT
66 TTCAT
** * *
1245405 AAGATTGACTATAGAGAAGGTTTATAGTCAATCTTGGACCAAAATG
1 AAGATTGACTATAGAG--GGACTATAGTCGATCTTGGACCAGAATG
1245451 CACAATTTCA
Statistics
Matches: 95, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
70 29 0.31
71 40 0.42
72 26 0.27
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (70 bp):
AAGATTGACTATAGAGGGACTATAGTCGATCTTGGACCAGAATGTCCATATTTTACCATTTTTCC
TTCAT
Found at i:1247584 original size:48 final size:48
Alignment explanation
Indices: 1247531--1247628 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
1247521 TATATCTACC
* *
1247531 TAACATTTTATGACCAATTGTTCATTTCTTTTCTATATTTATTTTATT
1 TAACATTTTATGACCAATTGTTCATTTCTTTTCTACATATATTTTATT
1247579 TAACATTTTATGACCAATTGTTCATTTCTTTTCTACATATATTTTATT
1 TAACATTTTATGACCAATTGTTCATTTCTTTTCTACATATATTTTATT
1247627 TA
1 TA
1247629 TTAAATATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (48 bp):
TAACATTTTATGACCAATTGTTCATTTCTTTTCTACATATATTTTATT
Found at i:1250749 original size:60 final size:59
Alignment explanation
Indices: 1250685--1250927 Score: 226
Period size: 60 Copynumber: 4.1 Consensus size: 59
1250675 ATTTTACTTA
* *
1250685 AAAAAATTGAAATTTTTAGACTTAATCTAGGCCTT-ACCTATCTCAAAACAGGTTCGATGT
1 AAAAAATTGAAATTTCTAAACTTAATCTAGG-CTTGACCTATCTCAAAACAGGTTCGAT-T
** * * *
1250745 AAAAAAATTTGAAA---CTCCACTTAATCTAGGCTTGACTTATCCCAAAACAGGTTTGATT
1 -AAAAAA-TTGAAATTTCTAAACTTAATCTAGGCTTGACCTATCTCAAAACAGGTTCGATT
* * * * * ** * *
1250803 -TAAACTTGAAATTCCTATACTTAATCTAGACTTGATTTATCTCAAAATAGATTCGACTT
1 AAAAAATTGAAATTTCTAAACTTAATCTAGGCTTGACCTATCTCAAAACAGGTTCGA-TT
* * *
1250862 AAAAAATTAAAATTTCTAAACTTAATCTAGGCTTGACCTATATCAAAACAAGTTCGATAT
1 AAAAAATTGAAATTTCTAAACTTAATCTAGGCTTGACCTATCTCAAAACAGGTTCGAT-T
1250922 AAAAAA
1 AAAAAA
1250928 AAATTTTGAA
Statistics
Matches: 146, Mismatches: 28, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
55 6 0.04
56 3 0.02
58 38 0.26
59 36 0.25
60 51 0.35
61 6 0.04
62 6 0.04
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.33
Consensus pattern (59 bp):
AAAAAATTGAAATTTCTAAACTTAATCTAGGCTTGACCTATCTCAAAACAGGTTCGATT
Found at i:1250837 original size:58 final size:59
Alignment explanation
Indices: 1250685--1251014 Score: 204
Period size: 58 Copynumber: 5.5 Consensus size: 59
1250675 ATTTTACTTA
* ** * *
1250685 AAAAAATTGAAATTTTTAGACTTAATCTAGGCCTT-ACCTATCTCAAAACAGGTTCGATGT
1 AAAAACTTGAAATTCCTATACTTAATCTAGG-CTTGACCTATCCCAAAACAGGTTCGAT-T
* * * *
1250745 AAAAAAATTTGAAACTCC---ACTTAATCTAGGCTTGACTTATCCCAAAACAGGTTTGATT
1 --AAAAACTTGAAATTCCTATACTTAATCTAGGCTTGACCTATCCCAAAACAGGTTCGATT
* * ** * * *
1250803 -TAAACTTGAAATTCCTATACTTAATCTAGACTTGATTTATCTCAAAATAGATTCGACTT
1 AAAAACTTGAAATTCCTATACTTAATCTAGGCTTGACCTATCCCAAAACAGGTTCGA-TT
* * * * ** *
1250862 AAAAAATTAAAATTTCTAAACTTAATCTAGGCTTGACCTATATCAAAACAAGTTCGATAT
1 AAAAACTTGAAATTCCTATACTTAATCTAGGCTTGACCTATCCCAAAACAGGTTCGAT-T
* * * * * * * *
1250922 AAAAAAAAATTTTGAAACTCTTATGCTTAATCTAGGTTTGACCTATCCCAAAATAGGTTTGGTT
1 ----AAAAA-CTTGAAATTCCTATACTTAATCTAGGCTTGACCTATCCCAAAACAGGTTCGATT
* * * *
1250986 -TAAACTTGAAATTGCTAGACTTATTCTAG
1 AAAAACTTGAAATTCCTATACTTAATCTAG
1251015 TCTCAACCTA
Statistics
Matches: 206, Mismatches: 50, Indels: 28
0.73 0.18 0.10
Matches are distributed among these distances:
55 12 0.06
58 54 0.26
59 38 0.18
60 45 0.22
62 12 0.06
64 6 0.03
65 39 0.19
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (59 bp):
AAAAACTTGAAATTCCTATACTTAATCTAGGCTTGACCTATCCCAAAACAGGTTCGATT
Done.