Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400057.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3276.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2372
ACGTcount: A:0.25, C:0.09, G:0.08, T:0.27

Warning! 756 characters in sequence are not A, C, G, or T


Found at i:1067 original size:169 final size:169

Alignment explanation


    Indices: 783--1162  Score: 460
    Period size: 169  Copynumber: 2.2  Consensus size: 169

        773 NNNNNNNNNN

                                *              *                             
        783 TAATCTCATAATTGATTTTAGGTTGAATTTTTTTATATTTTTGGTTAAAACAAAATGTAATTAAA
          1 TAATCTCATAATTGATTTTAAGTTGAA-TTTTTTACA-TTTTGGTTAAAACAAAATGTAATTAAA

                             *           *                                   
        848 TGTTTATCTTGACAAACGTGAAGAAAAAGGCATTCATTGGCAACAAAAGTCCATTTATAGTCACC
         64 TGTTTATCTTGACAAACATGAAGAAAAAGACATTCATTGGCAACAAAAGTCCATTTATAGTCACC

                     *                               
        913 CATCCCTTCGAAAGCCTTACAACTCACTATAAATGGTTTTA
        129 CATCCCTTCAAAAGCCTTACAACTCACTATAAATGGTTTTA

                                        *                     * * *     *    
        954 TAATCTCATAATTGATTTTAAGTTGAATATTTTACATTTTGGTTAAAACAGATTTTAATTGAATG
          1 TAATCTCATAATTGATTTTAAGTTGAATTTTTTACATTTTGGTTAAAACAAAATGTAATTAAATG

               *       *                   *            *       *            
       1019 TTTGTCTCT-AGAAACATG-AGAAAAAAGACCTTCATT-GCTAAGAAAAGTCTATTTATAGTCAC
         66 TTTATCT-TGACAAACATGAAG-AAAAAGACATTCATTGGC-AACAAAAGTCCATTTATAGTCAC

            **  *               **   *** *     *      
       1081 TTATTCCTTCAAAAGCCTTATGACTTGTTTTAAATTGTTTTA
        128 CCATCCCTTCAAAAGCCTTACAACTCACTATAAATGGTTTTA

                                    *               
       1123 TAATCTCATAATTGATTTTAAGTTTAATTTTTTACATTTT
          1 TAATCTCATAATTGATTTTAAGTTGAATTTTTTACATTTT

       1163 TCATTAAANN


Statistics
Matches: 179,  Mismatches: 27, Indels: 8
        0.84            0.13        0.04

Matches are distributed among these distances:
 168    4  0.02
 169  141  0.79
 170    8  0.04
 171   26  0.15

ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41


Consensus pattern (169 bp):   
TAATCTCATAATTGATTTTAAGTTGAATTTTTTACATTTTGGTTAAAACAAAATGTAATTAAATG
TTTATCTTGACAAACATGAAGAAAAAGACATTCATTGGCAACAAAAGTCCATTTATAGTCACCCA
TCCCTTCAAAAGCCTTACAACTCACTATAAATGGTTTTA
Done.