Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400072.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3290.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6478
ACGTcount: A:0.27, C:0.10, G:0.09, T:0.30

Warning! 1538 characters in sequence are not A, C, G, or T


Found at i:786 original size:13 final size:14

Alignment explanation


    Indices: 758--791  Score: 52
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        748 AAAATTGATT

                           
        758 TTAAATATTATTTTA
          1 TTAAA-ATTATTTTA

                          
        773 TTAAAATT-TTTTA
          1 TTAAAATTATTTTA

                  
        786 TTAAAA
          1 TTAAAA

        792 AAGATTATAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13   11  0.58
  14    3  0.16
  15    5  0.26

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (14 bp):   
TTAAAATTATTTTA

Found at i:3614 original size:168 final size:170

Alignment explanation


    Indices: 3279--3667  Score: 446
    Period size: 168  Copynumber: 2.3  Consensus size: 170

       3269 NNNNNNCTTT

                                      *      *  *                *  *        
       3279 AAAAGCCTTATTACTCACTTTAAATGGTTTTATTATGTCAAAATTGATTTTAATTTCAATTTTTA
          1 AAAAGCCTTATTACTCACTTTAAATGATTTTATAATCTCAAAATTGATTTTAAGTTAAATTTTTA

                              *  *                   *         *         *   
       3344 TTCTATTTTAGTTAAAATTGATTATAATTGAATGCCTGTCTTAGGAAACATGTAGAAAAAGCCAT
         66 -TCTATTTTAGTTAAAATAGACTATAATTGAATGCCTGTCTGAGGAAACATATAGAAAAAGACAT

                                     * *  *        * 
       3409 TAATCAGGAAGAAAAGTCTATTTATGGTCTTCCATTCCTTC
        130 TAATCAGGAAGAAAAGTCTATTTATAGCCTCCCATTCCTCC

                    *        *    *    *             *                       
       3450 AAAAGCCTCATTACTC-GTTATGAATGCTTTTATAATCTCATAATTGATTTTAAGTTAAATTTTT
          1 AAAAGCCTTATTACTCACTT-TAAATGATTTTATAATCTCAAAATTGATTTTAAGTTAAATTTTT

                      *                         *              *   *         
       3514 A-C-ATTTTTCGTT-AAATAGACTATAATTGAATGCTTGTCTCGA-GAAACGTATTGAAAAAGAC
         65 ATCTA-TTTTAGTTAAAATAGACTATAATTGAATGCCTGTCT-GAGGAAACATATAGAAAAAGAC

               *  **   *       *                       
       3575 ATTCATTTGGACGAAAAGTTTATTTATAGCCTCCCATTCCTCC
        128 ATTAATCAGGAAGAAAAGTCTATTTATAGCCTCCCATTCCTCC

                *                                             
       3618 AAAAACCTTATTACTCACTTTAAATGATTTTATAATCTCAAAATTGATTT
          1 AAAAGCCTTATTACTCACTTTAAATGATTTTATAATCTCAAAATTGATTT

       3668 NNNNNNNNNN


Statistics
Matches: 181,  Mismatches: 33, Indels: 11
        0.80            0.15        0.05

Matches are distributed among these distances:
 168  115  0.64
 169   11  0.06
 170    2  0.01
 171   53  0.29

ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40


Consensus pattern (170 bp):   
AAAAGCCTTATTACTCACTTTAAATGATTTTATAATCTCAAAATTGATTTTAAGTTAAATTTTTA
TCTATTTTAGTTAAAATAGACTATAATTGAATGCCTGTCTGAGGAAACATATAGAAAAAGACATT
AATCAGGAAGAAAAGTCTATTTATAGCCTCCCATTCCTCC
Done.