Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400082.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3300.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1995
ACGTcount: A:0.17, C:0.07, G:0.09, T:0.16

Warning! 1032 characters in sequence are not A, C, G, or T


Found at i:25 original size:18 final size:19

Alignment explanation


    Indices: 2--44  Score: 79
    Period size: 19  Copynumber: 2.3  Consensus size: 19

          1 A

                               
          2 AATATTTT-TAAATAAAAT
          1 AATATTTTATAAATAAAAT

                               
         20 AATATTTTATAAATAAAAT
          1 AATATTTTATAAATAAAAT

                  
         39 AATATT
          1 AATATT

         45 AAAATATTAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  18    8  0.33
  19   16  0.67

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (19 bp):   
AATATTTTATAAATAAAAT

Found at i:47 original size:15 final size:16

Alignment explanation


    Indices: 8--50  Score: 50
    Period size: 19  Copynumber: 2.5  Consensus size: 16

          1 AAATATT

                            
          8 TTTAAATAAAATAATA
          1 TTTAAATAAAATAATA

                               
         24 TTTTATAAATAAAATAATA
          1 --TT-TAAATAAAATAATA

              *     
         43 TTAAAATA
          1 TTTAAATA

         51 TTAAAATTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  16    5  0.22
  17    2  0.09
  18    2  0.09
  19   14  0.61

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (16 bp):   
TTTAAATAAAATAATA
Done.