Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400084.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3302.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4245
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.21

Warning! 1781 characters in sequence are not A, C, G, or T


Found at i:4006 original size:170 final size:172

Alignment explanation


    Indices: 3772--4131  Score: 422
    Period size: 170  Copynumber: 2.1  Consensus size: 172

       3762 NNNNNNNNAG

                                 *                *                          
       3772 TTTAAATAGTTTTATAATCTCTAAATTGATTTAAATTTGAATGTTTTGTACATTTTTAGTTAAAA
          1 TTTAAATAGTTTTATAATCTCAAAATTGATTTAAATTTAAATGTTTTGTACATTTTTAGTTAAAA

            *          *                      *                    *         
       3837 TAGAGTAGAATTGAATGTATACCATGAGAAACATGAAGAA-AAGT-ATTAAATGGTAAAAAAAAT
         66 CAGAGTAGAATCGAATGTATACCATGAGAAACATAAAGAAGAAGTCATTAAATGGCAAAAAAAAT

            *                * *                   *  
       3900 CTATTTATAGTCACCCATTGCTTCAAAAGCCTTATTAATTAC
        131 ATATTTATAGTCACCCACTCCTTCAAAAGCCTTATTAATCAC

                *             *                             * *        *     
       3942 TTTAGATAGTTTTATAATTTCAAAATTGATTTTAAATTTAAAT-TTTTTTGC-TTTTCTGGTTAA
          1 TTTAAATAGTTTTATAATCTCAAAATTGA-TTTAAATTTAAATGTTTTGTACATTTT-TAGTTAA

                * *  *               *                  *      * *      * *  
       4005 AACATATTATAATCGAATGTATACCCTGAGAAACATAAAGAAGAGGTCATTCATTGGCAAGAGAA
         64 AACAGAGTAGAATCGAATGTATACCATGAGAAACATAAAGAAGAAGTCATTAAATGGCAAAAAAA

            *                                      *    
       4070 GTATATTTATAGTCACCCACTCCTTCAAAAGCCTTATTACTCAC
        129 ATATATTTATAGTCACCCACTCCTTCAAAAGCCTTATTAATCAC

                   *    *     
       4114 TTTAAATGGTTTCATAAT
          1 TTTAAATAGTTTTATAAT

       4132 NNNNNNNNNN


Statistics
Matches: 157,  Mismatches: 29, Indels: 6
        0.82            0.15        0.03

Matches are distributed among these distances:
 169    4  0.03
 170   73  0.46
 171   15  0.10
 172   65  0.41

ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38


Consensus pattern (172 bp):   
TTTAAATAGTTTTATAATCTCAAAATTGATTTAAATTTAAATGTTTTGTACATTTTTAGTTAAAA
CAGAGTAGAATCGAATGTATACCATGAGAAACATAAAGAAGAAGTCATTAAATGGCAAAAAAAAT
ATATTTATAGTCACCCACTCCTTCAAAAGCCTTATTAATCAC
Done.