Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400103.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3321.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1731
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.22

Warning! 795 characters in sequence are not A, C, G, or T


Found at i:1379 original size:170 final size:162

Alignment explanation


    Indices: 1030--1411  Score: 426
    Period size: 170  Copynumber: 2.3  Consensus size: 162

       1020 NNNACTCACC

                   *                  * *        *                           
       1030 TTAAATGATTTTATAATCTCATAATTAAGTTTAAGTTGAATTTTTTACATTTTTTGTTAAAATAG
          1 TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTACATTTTTTGTTAAAATAG

                         *  * ***               *          *               * 
       1095 ACAATAATTGAGTGGCTGCCTCGAGAGAAAAACTCATTTATTTGGAAGAAAAGTCTATTTATAGT
         66 ACAATAATTGAGTAGCAGAAACGAGAGAAAAACTCAGTTATTTGGAACAAAAGTCTATTTATAAT

                               * *          
       1160 CTTCCATTCCTTCAAAAGCTTTTTTACTTACT
        131 CTTCCATTCCTTCAAAAGCCTATTTACTTACT

             *   *                                 *                         
       1192 TCAAAAGGTTTTATAATCTCATAATTGATTTTAAGTTCACTTTTTTACATTTTTTGTTAAAATAG
          1 TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTACATTTTTTGTTAAAATAG

              *            *              *                                  
       1257 ACTATAATTGAATATTTACAGCGAGAAACGTGTAGAAAAACTCAGTTATTTGGAACAAAAGTCTA
         66 ACAATAATTG---A-GT--AGC-AGAAACGAG-AGAAAAACTCAGTTATTTGGAACAAAAGTCTA

               *             *                     *  
       1322 TTTGTAATC-TCTCATTTCTTCAAAAGTCCTATTT-CTTGCT
        123 TTTATAATCTTC-CATTCCTTCAAAAG-CCTATTTACTTACT

                                           *     *   *        
       1362 TTAAATGGTTTTATAATCTCATAATTGATTTCAAGTTGAATATTTTACAT
          1 TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTACAT

       1412 NNNNNNNNNN


Statistics
Matches: 181,  Mismatches: 29, Indels: 12
        0.82            0.13        0.05

Matches are distributed among these distances:
 162   67  0.37
 165    1  0.01
 166    1  0.01
 168    2  0.01
 169    6  0.03
 170   99  0.55
 171    5  0.03

ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42


Consensus pattern (162 bp):   
TTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTCAATTTTTTACATTTTTTGTTAAAATAG
ACAATAATTGAGTAGCAGAAACGAGAGAAAAACTCAGTTATTTGGAACAAAAGTCTATTTATAAT
CTTCCATTCCTTCAAAAGCCTATTTACTTACT
Done.