Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400105.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3323.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7432
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.25

Warning! 2228 characters in sequence are not A, C, G, or T


Found at i:434 original size:172 final size:170

Alignment explanation


    Indices: 42--514  Score: 403
    Period size: 172  Copynumber: 2.8  Consensus size: 170

         32 ACTAATAAGG

                                 *              *   *        * *    *     *  
         42 CTTTTGAAGGAATGGGTGACTTTAAATGG-ACTTTTATTACCAATGAATACCTCTTACTTCACGT
          1 CTTTTGAAGGAATGGGTGACTATAAATGGAACTTTTCTT-GCAATGAATGCTTCTTTCTTCATGT

             *   *               **********            *                     
        106 TTCTCGAGGTAAACATTCAATNNNNNNNNNNTTTAACCAAAAAAGTAAAAAAAA-TCAACTTAAA
         65 TCCTCAAGGTAAACATTCAATTATAATATGTTTTAA-CAAAAATG-AAAAAAAATTCAACTTAAA

                                 *         **     **   
        170 ATCAATTATGGGATTATAAAATTATTTAAAGTGAGTAATTAGC
        128 ATCAATTATGGGATTATAAAACTATTTAAAGAAAGTAAGAAGC

                         *       *        **********                   *     
        213 CTTTTGAAGGAATTGGTGACTCTAAATGGANNNNNNNNNNCAATGAATGCTTCTTTCTTTATGTT
          1 CTTTTGAAGGAATGGGTGACTATAAATGGAACTTTTCTTGCAATGAATGCTTCTTTCTTCATGTT

            *     *   *             *                                       *
        278 TCTCAATGTAGACATTCAATTATAGTATGTTTTAATCAAAAATGAAAAAAAAATTCAACTTAAAG
         66 CCTCAAGGTAAACATTCAATTATAATATGTTTTAA-CAAAAATG-AAAAAAAATTCAACTTAAAA

                     *                                
        343 TCAATTATGTGATTATAAAACTATTTAAAGAAAGTAAGAAGC
        129 TCAATTATGGGATTATAAAACTATTTAAAGAAAGTAAGAAGC

                               *                       *         *           
        385 CTTTTGAAGGAATGGGTGATTATAAATGG-ACTTTTCTTGCTAGTGAATGCTTGTTTCTTCATGT
          1 CTTTTGAAGGAATGGGTGACTATAAATGGAACTTTTCTTGC-AATGAATGCTTCTTTCTTCATGT

                *                      *                 *         *         
        449 TCCTTAAGGTAAACATTCAATTATAATCTGTTTTAACTAAAAATGTAAAAAAATTGAACTTAAAA
         65 TCCTCAAGGTAAACATTCAATTATAATATGTTTTAAC-AAAAATGAAAAAAAATTCAACTTAAAA

             
        514 T
        129 T

        515 NNNNNNNNNN


Statistics
Matches: 233,  Mismatches: 65, Indels: 8
        0.76            0.21        0.03

Matches are distributed among these distances:
 171  104  0.45
 172  129  0.55

ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34


Consensus pattern (170 bp):   
CTTTTGAAGGAATGGGTGACTATAAATGGAACTTTTCTTGCAATGAATGCTTCTTTCTTCATGTT
CCTCAAGGTAAACATTCAATTATAATATGTTTTAACAAAAATGAAAAAAAATTCAACTTAAAATC
AATTATGGGATTATAAAACTATTTAAAGAAAGTAAGAAGC
Done.