Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400106.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3324.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1070
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.30

Warning! 233 characters in sequence are not A, C, G, or T


Found at i:1035 original size:171 final size:170

Alignment explanation


    Indices: 572--1070  Score: 477
    Period size: 171  Copynumber: 2.9  Consensus size: 170

        562 NNNNNNGTTA

                      *       *        *               * *    *          *   
        572 AATTTTTTTACATTTTTTGTTAAAACAAACTATAATTAAATGCTTACCTCGCGAAACATGCCA-A
          1 AATTTTTTTAAATTTTTTATTAAAACACACTATAATTAAATGCCTGCCTCACGAAACATG-TAGA

                      *                                             *        
        636 AAAAGCTATTTATTGAGAAAAAACGTCCATATATAGTCACCCATTCCTTT-AAAAGGCTTATTAC
         65 AAAAGCTATTCATTGAGAAAAAA-GTCCATATATAGTCACCCATT-CTTTCAAAAGCCTTATTAC

                                *    *                 
        700 TCACTTTAAATGGTTTTATATTCTCGTAATTGATTTTAAGTTT
        128 TCACTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTT

                                                      *                      
        743 AATTTTTTTAAATTTTTTATTAAAACACACTATAATTAAATGTCTGCCTCACGAAACATGTAGAA
          1 AATTTTTTTAAATTTTTTATTAAAACACACTATAATTAAATGCCTGCCTCACGAAACATGTAGAA

               **                     *  **********      *                 * 
        808 AAAATTATTCATTGAGAACAAAAGTCTATNNNNNNNNNNCCATTCCTTCAAAAGCCTTATTACCC
         66 AAAGCTATTCATTGAGAA-AAAAGTCCATATATAGTCACCCATTCTTTCAAAAGCCTTATTACTC

                *                                     
        873 ACTTCAAATGGTTTTATAATCTCATAATT-ATTTTTAAGTTT
        130 ACTTTAAATGGTTTTATAATCTCATAATTGA-TTTTAAGTTT

                      *                 *   *                *   *    **    *
        914 AATTTTTTTATATTTTTCT-TTAAAACAGACTTTAATTATAA-GCCTGCTTCAGGAAAGGTGTAT
          1 AATTTTTTTAAATTTTT-TATTAAAACACACTATAATTA-AATGCCTGCCTCACGAAACATGTAG

                   *                 *     * *     *           *            *
        977 AAAAAGCCATTCATTGAGAATAAAAATCCATTTTTAGTCGCCCATTCTTTCGAAAGCCTTATTAT
         64 AAAAAGCTATTCATTGAGAA-AAAAGTCCATATATAGTCACCCATTCTTTCAAAAGCCTTATTAC

              **        *                
       1042 TCGGTTTAAATGATTTTATAATCTCATAA
        128 TCACTTTAAATGGTTTTATAATCTCATAA


Statistics
Matches: 261,  Mismatches: 61, Indels: 12
        0.78            0.18        0.04

Matches are distributed among these distances:
 170    5  0.02
 171  249  0.95
 172    7  0.03

ACGTcount: A:0.35, C:0.15, G:0.09, T:0.39


Consensus pattern (170 bp):   
AATTTTTTTAAATTTTTTATTAAAACACACTATAATTAAATGCCTGCCTCACGAAACATGTAGAA
AAAGCTATTCATTGAGAAAAAAGTCCATATATAGTCACCCATTCTTTCAAAAGCCTTATTACTCA
CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTT
Done.