Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400108.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3326.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.20

Warning! 618 characters in sequence are not A, C, G, or T


Found at i:1332 original size:53 final size:53

Alignment explanation


    Indices: 1231--1333  Score: 136
    Period size: 53  Copynumber: 1.9  Consensus size: 53

       1221 AAAACAGATT

                              **                      **         
       1231 ATAATTGAATATCTACCTTGGAAATCGTGAAGAAAAAGATATTTATTGGCCAG
          1 ATAATTGAATATCTACCTAAGAAATCGTGAAGAAAAAGATATCCATTGGCCAG

                      *                         *              
       1284 ATAATTGAATGTCTACCTCAAGAAAT-GTGAAGAAATAGATATCCATTGGC
          1 ATAATTGAATATCTACCT-AAGAAATCGTGAAGAAAAAGATATCCATTGGC

       1334 A


Statistics
Matches: 43,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  53   38  0.88
  54    5  0.12

ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29


Consensus pattern (53 bp):   
ATAATTGAATATCTACCTAAGAAATCGTGAAGAAAAAGATATCCATTGGCCAG
Done.